Query 029152
Match_columns 198
No_of_seqs 226 out of 2153
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 4.3E-20 9.3E-25 136.3 16.3 83 58-140 28-116 (144)
2 KOG0153 Predicted RNA-binding 99.8 1.5E-19 3.3E-24 145.6 10.5 127 3-137 159-302 (377)
3 KOG0148 Apoptosis-promoting RN 99.8 5.7E-18 1.2E-22 132.7 13.3 82 59-140 159-240 (321)
4 TIGR01659 sex-lethal sex-letha 99.8 1.6E-17 3.5E-22 138.7 15.5 79 62-140 191-277 (346)
5 KOG0107 Alternative splicing f 99.7 8.2E-17 1.8E-21 118.9 10.3 78 63-140 9-87 (195)
6 KOG0105 Alternative splicing f 99.7 6.4E-17 1.4E-21 120.5 9.3 78 62-139 4-84 (241)
7 KOG0121 Nuclear cap-binding pr 99.7 4.1E-17 8.9E-22 114.7 6.7 77 61-137 33-115 (153)
8 KOG0117 Heterogeneous nuclear 99.7 1.2E-16 2.6E-21 132.7 10.5 84 56-141 251-334 (506)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2E-16 4.3E-21 132.6 12.1 77 63-139 268-350 (352)
10 TIGR01659 sex-lethal sex-letha 99.7 1.6E-16 3.6E-21 132.6 11.1 79 59-137 102-186 (346)
11 KOG0122 Translation initiation 99.7 1.2E-16 2.7E-21 123.6 9.2 79 60-138 185-269 (270)
12 KOG0125 Ataxin 2-binding prote 99.7 1.1E-16 2.4E-21 128.4 9.1 81 59-139 91-175 (376)
13 TIGR01648 hnRNP-R-Q heterogene 99.7 5.5E-16 1.2E-20 136.2 14.0 79 61-141 230-310 (578)
14 PF00076 RRM_1: RNA recognitio 99.7 2.5E-16 5.4E-21 101.5 7.9 65 67-131 1-70 (70)
15 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.2E-16 1.4E-20 129.6 10.5 77 63-139 2-84 (352)
16 PLN03120 nucleic acid binding 99.6 1.8E-15 3.8E-20 119.9 10.5 73 64-137 4-79 (260)
17 TIGR01628 PABP-1234 polyadenyl 99.6 6.1E-15 1.3E-19 131.0 14.7 79 61-139 282-365 (562)
18 KOG4207 Predicted splicing fac 99.6 3.5E-15 7.6E-20 113.1 9.2 81 58-138 7-93 (256)
19 KOG0149 Predicted RNA-binding 99.6 7.1E-15 1.5E-19 113.4 9.6 77 60-137 8-90 (247)
20 PF14259 RRM_6: RNA recognitio 99.6 1.3E-14 2.9E-19 93.8 8.8 65 67-131 1-70 (70)
21 KOG0144 RNA-binding protein CU 99.6 1.6E-15 3.5E-20 125.6 4.5 83 62-144 122-212 (510)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 2.3E-14 5E-19 125.1 11.3 76 63-138 1-78 (481)
23 PLN03213 repressor of silencin 99.6 1.5E-14 3.2E-19 121.9 9.5 76 62-137 8-87 (759)
24 KOG0113 U1 small nuclear ribon 99.6 4.2E-14 9.1E-19 112.4 11.2 84 61-144 98-187 (335)
25 TIGR01645 half-pint poly-U bin 99.6 3.4E-14 7.3E-19 125.4 11.8 78 63-140 203-286 (612)
26 PLN03121 nucleic acid binding 99.5 3.8E-14 8.3E-19 110.8 10.2 75 62-137 3-80 (243)
27 smart00362 RRM_2 RNA recogniti 99.5 5.7E-14 1.2E-18 89.8 9.3 68 66-133 1-72 (72)
28 TIGR01648 hnRNP-R-Q heterogene 99.5 3.3E-14 7.2E-19 125.1 10.7 81 56-136 50-136 (578)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.3E-14 1.4E-18 122.4 11.5 79 61-139 272-352 (481)
30 KOG0109 RNA-binding protein LA 99.5 2.1E-14 4.5E-19 113.8 6.9 73 65-139 3-75 (346)
31 TIGR01645 half-pint poly-U bin 99.5 5.6E-14 1.2E-18 124.0 10.0 75 62-136 105-185 (612)
32 PF13893 RRM_5: RNA recognitio 99.5 1.8E-13 4E-18 84.7 8.9 55 81-135 1-56 (56)
33 KOG0111 Cyclophilin-type pepti 99.5 1.9E-14 4.1E-19 110.1 5.2 82 61-142 7-94 (298)
34 TIGR01622 SF-CC1 splicing fact 99.5 1.4E-13 2.9E-18 119.4 10.4 75 63-137 185-265 (457)
35 KOG0114 Predicted RNA-binding 99.5 2.5E-13 5.4E-18 92.4 9.2 76 62-137 16-94 (124)
36 TIGR01628 PABP-1234 polyadenyl 99.5 1.5E-13 3.3E-18 122.1 10.4 72 66-137 2-79 (562)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.5 3.4E-13 7.3E-18 118.4 11.8 76 63-138 294-375 (509)
38 KOG0117 Heterogeneous nuclear 99.5 3.6E-13 7.9E-18 112.2 10.3 88 49-136 68-162 (506)
39 KOG0130 RNA-binding protein RB 99.5 1.6E-13 3.4E-18 97.6 6.7 83 56-138 64-152 (170)
40 TIGR01622 SF-CC1 splicing fact 99.5 6.8E-13 1.5E-17 115.1 11.5 78 60-138 85-168 (457)
41 cd00590 RRM RRM (RNA recogniti 99.4 1.2E-12 2.6E-17 84.0 9.5 69 66-134 1-74 (74)
42 KOG0145 RNA-binding protein EL 99.4 5.3E-13 1.2E-17 104.6 8.9 81 60-140 37-123 (360)
43 KOG0144 RNA-binding protein CU 99.4 4.5E-13 9.6E-18 111.3 8.0 82 60-141 30-120 (510)
44 KOG0148 Apoptosis-promoting RN 99.4 1.3E-12 2.7E-17 102.9 8.4 77 64-140 62-144 (321)
45 KOG0132 RNA polymerase II C-te 99.4 8.3E-13 1.8E-17 116.3 8.0 78 64-141 421-498 (894)
46 smart00360 RRM RNA recognition 99.4 2E-12 4.4E-17 82.1 7.8 65 69-133 1-71 (71)
47 COG0724 RNA-binding proteins ( 99.4 2.6E-12 5.7E-17 102.2 9.6 73 64-136 115-193 (306)
48 KOG0131 Splicing factor 3b, su 99.4 1.1E-12 2.5E-17 97.6 5.6 75 62-136 7-87 (203)
49 KOG0108 mRNA cleavage and poly 99.3 2.3E-12 5E-17 109.8 7.6 77 65-141 19-101 (435)
50 KOG0127 Nucleolar protein fibr 99.3 3.7E-12 7.9E-17 108.6 8.7 77 63-139 116-197 (678)
51 KOG0126 Predicted RNA-binding 99.3 2.1E-13 4.5E-18 101.5 0.4 77 60-136 31-113 (219)
52 TIGR01642 U2AF_lg U2 snRNP aux 99.3 8E-12 1.7E-16 109.7 10.3 77 59-136 170-258 (509)
53 KOG0415 Predicted peptidyl pro 99.3 4.7E-12 1E-16 103.1 7.0 85 56-140 231-321 (479)
54 KOG4212 RNA-binding protein hn 99.3 2.6E-11 5.6E-16 101.2 10.1 75 63-137 43-123 (608)
55 KOG0145 RNA-binding protein EL 99.3 3.1E-11 6.7E-16 94.7 9.9 79 60-138 274-358 (360)
56 KOG0109 RNA-binding protein LA 99.3 8.1E-12 1.8E-16 99.3 6.0 78 61-140 75-152 (346)
57 KOG0116 RasGAP SH3 binding pro 99.2 7.8E-11 1.7E-15 99.9 9.9 78 63-141 287-370 (419)
58 KOG0146 RNA-binding protein ET 99.2 1.7E-11 3.7E-16 96.5 5.3 82 59-140 280-367 (371)
59 KOG0124 Polypyrimidine tract-b 99.2 1.4E-11 3E-16 100.8 4.4 72 64-135 113-190 (544)
60 KOG4206 Spliceosomal protein s 99.2 9.3E-11 2E-15 90.3 8.0 78 63-140 8-92 (221)
61 KOG0146 RNA-binding protein ET 99.2 2.8E-11 6E-16 95.4 4.6 80 63-142 18-105 (371)
62 smart00361 RRM_1 RNA recogniti 99.2 1.7E-10 3.6E-15 74.7 7.5 56 78-133 2-70 (70)
63 KOG0127 Nucleolar protein fibr 99.1 1.1E-10 2.5E-15 99.7 7.2 77 64-140 5-87 (678)
64 KOG0147 Transcriptional coacti 99.1 9.8E-11 2.1E-15 100.0 6.2 73 66-138 280-358 (549)
65 KOG0123 Polyadenylate-binding 99.1 3.2E-10 7E-15 95.6 8.9 73 67-140 79-155 (369)
66 KOG0131 Splicing factor 3b, su 99.1 2.3E-10 5.1E-15 85.4 6.5 84 59-142 91-181 (203)
67 KOG0110 RNA-binding protein (R 99.1 4.3E-10 9.2E-15 98.7 8.4 72 65-136 516-596 (725)
68 KOG4661 Hsp27-ERE-TATA-binding 99.1 7.6E-10 1.7E-14 95.2 8.9 79 61-139 402-486 (940)
69 KOG4205 RNA-binding protein mu 99.0 2.9E-09 6.3E-14 87.4 10.5 79 63-142 96-180 (311)
70 KOG4205 RNA-binding protein mu 99.0 4.5E-10 9.9E-15 92.1 5.1 77 63-140 5-87 (311)
71 KOG0106 Alternative splicing f 99.0 5.6E-10 1.2E-14 86.6 5.3 72 65-138 2-73 (216)
72 KOG0110 RNA-binding protein (R 99.0 9E-10 2E-14 96.7 5.8 79 61-139 610-694 (725)
73 KOG4212 RNA-binding protein hn 99.0 2.5E-09 5.4E-14 89.5 8.0 78 58-135 530-608 (608)
74 KOG1457 RNA binding protein (c 99.0 1.2E-08 2.6E-13 78.7 10.9 82 60-141 30-121 (284)
75 KOG0151 Predicted splicing reg 98.9 5.3E-09 1.2E-13 91.9 8.8 80 58-137 168-256 (877)
76 KOG4208 Nucleolar RNA-binding 98.9 8.1E-09 1.8E-13 78.7 7.8 80 59-138 44-130 (214)
77 KOG0124 Polypyrimidine tract-b 98.8 7.1E-09 1.5E-13 85.1 6.6 77 63-139 209-291 (544)
78 KOG4660 Protein Mei2, essentia 98.8 4.7E-09 1E-13 90.1 4.7 74 58-131 69-143 (549)
79 KOG0123 Polyadenylate-binding 98.8 1.9E-08 4.2E-13 84.9 8.3 71 65-138 2-75 (369)
80 KOG0533 RRM motif-containing p 98.8 3.5E-08 7.6E-13 78.2 8.2 81 60-140 79-164 (243)
81 KOG4454 RNA binding protein (R 98.6 1.2E-08 2.5E-13 78.5 2.0 74 63-136 8-85 (267)
82 KOG4209 Splicing factor RNPS1, 98.6 1.4E-07 3.1E-12 74.7 8.2 80 58-138 95-180 (231)
83 KOG1456 Heterogeneous nuclear 98.6 1.3E-06 2.8E-11 72.2 13.7 79 62-140 118-201 (494)
84 KOG1190 Polypyrimidine tract-b 98.5 5.2E-07 1.1E-11 75.2 9.2 78 64-141 297-376 (492)
85 KOG1548 Transcription elongati 98.5 3.8E-07 8.3E-12 74.5 8.1 80 60-139 130-222 (382)
86 KOG4211 Splicing factor hnRNP- 98.3 2.2E-06 4.8E-11 73.0 8.3 74 62-137 8-85 (510)
87 PF08777 RRM_3: RNA binding mo 98.3 1.6E-06 3.4E-11 60.5 5.9 70 65-134 2-76 (105)
88 KOG0106 Alternative splicing f 98.3 7.5E-07 1.6E-11 69.3 4.6 74 60-135 95-168 (216)
89 PF04059 RRM_2: RNA recognitio 98.3 5.4E-06 1.2E-10 56.8 8.0 74 65-138 2-87 (97)
90 PF11608 Limkain-b1: Limkain b 98.3 3.6E-06 7.7E-11 55.5 6.6 69 65-137 3-76 (90)
91 KOG1457 RNA binding protein (c 98.3 7.6E-07 1.6E-11 68.9 4.0 64 63-126 209-274 (284)
92 KOG4206 Spliceosomal protein s 98.2 5.8E-06 1.3E-10 64.1 8.0 78 59-136 141-220 (221)
93 KOG0226 RNA-binding proteins [ 98.1 2.5E-06 5.4E-11 67.2 4.2 79 58-136 184-268 (290)
94 PF14605 Nup35_RRM_2: Nup53/35 98.1 5.9E-06 1.3E-10 50.3 5.0 52 65-117 2-53 (53)
95 KOG1456 Heterogeneous nuclear 98.1 2.8E-05 6.1E-10 64.5 9.1 81 59-139 282-364 (494)
96 KOG0120 Splicing factor U2AF, 98.1 4.7E-06 1E-10 72.2 4.7 82 59-140 284-371 (500)
97 KOG0105 Alternative splicing f 98.1 0.00016 3.4E-09 54.8 12.0 69 57-126 108-176 (241)
98 KOG4211 Splicing factor hnRNP- 98.0 2.3E-05 5E-10 66.9 7.9 73 62-135 101-179 (510)
99 KOG1995 Conserved Zn-finger pr 98.0 1.1E-05 2.3E-10 66.5 5.5 81 59-139 61-155 (351)
100 KOG1855 Predicted RNA-binding 98.0 1.1E-05 2.3E-10 67.9 4.8 65 59-123 226-309 (484)
101 COG5175 MOT2 Transcriptional r 97.9 3E-05 6.4E-10 63.6 6.6 73 64-136 114-201 (480)
102 PF05172 Nup35_RRM: Nup53/35/4 97.9 6.5E-05 1.4E-09 51.8 7.2 72 63-136 5-90 (100)
103 KOG0147 Transcriptional coacti 97.8 8.7E-06 1.9E-10 70.3 2.1 82 58-140 173-260 (549)
104 KOG4210 Nuclear localization s 97.7 3.8E-05 8.3E-10 62.8 4.6 76 64-140 184-266 (285)
105 KOG4849 mRNA cleavage factor I 97.7 0.00019 4E-09 59.2 7.3 68 65-132 81-156 (498)
106 KOG1190 Polypyrimidine tract-b 97.7 0.0002 4.2E-09 60.2 7.5 77 61-137 411-490 (492)
107 KOG0120 Splicing factor U2AF, 97.5 0.00041 8.9E-09 60.4 7.3 58 80-137 425-491 (500)
108 KOG0129 Predicted RNA-binding 97.5 0.00046 1E-08 59.5 7.5 58 61-119 256-325 (520)
109 KOG3152 TBP-binding protein, a 97.4 7.8E-05 1.7E-09 58.9 2.0 67 63-129 73-157 (278)
110 KOG1365 RNA-binding protein Fu 97.3 0.00099 2.1E-08 55.7 7.3 76 61-136 277-360 (508)
111 KOG2314 Translation initiation 97.3 0.0013 2.7E-08 57.5 8.1 73 62-134 56-140 (698)
112 KOG2416 Acinus (induces apopto 97.3 0.00029 6.3E-09 61.7 3.9 81 57-137 437-521 (718)
113 KOG0112 Large RNA-binding prot 97.2 0.00069 1.5E-08 61.9 6.2 81 60-140 451-533 (975)
114 KOG1548 Transcription elongati 97.2 0.0015 3.2E-08 53.9 7.5 80 58-137 259-351 (382)
115 KOG2193 IGF-II mRNA-binding pr 97.2 0.00029 6.2E-09 59.5 2.8 77 65-141 2-79 (584)
116 PF08952 DUF1866: Domain of un 97.2 0.0024 5.2E-08 46.8 7.2 55 80-137 52-106 (146)
117 PF10309 DUF2414: Protein of u 97.1 0.0032 7E-08 39.4 6.5 56 63-120 4-62 (62)
118 KOG4307 RNA binding protein RB 96.9 0.0026 5.7E-08 56.9 6.8 69 66-134 869-943 (944)
119 KOG0129 Predicted RNA-binding 96.8 0.0056 1.2E-07 53.0 7.9 62 58-119 364-432 (520)
120 KOG2202 U2 snRNP splicing fact 96.8 0.00062 1.3E-08 53.9 1.7 56 80-135 84-145 (260)
121 KOG1996 mRNA splicing factor [ 96.6 0.0063 1.4E-07 49.3 6.2 59 78-136 300-365 (378)
122 PF04847 Calcipressin: Calcipr 96.6 0.0091 2E-07 45.8 6.6 62 77-138 8-71 (184)
123 PF08675 RNA_bind: RNA binding 96.6 0.023 5E-07 37.6 7.5 56 63-121 8-63 (87)
124 KOG4676 Splicing factor, argin 96.6 0.0033 7.1E-08 52.8 4.3 70 65-135 8-86 (479)
125 KOG2135 Proteins containing th 96.2 0.0036 7.8E-08 53.7 2.9 79 58-137 366-445 (526)
126 KOG0112 Large RNA-binding prot 96.2 0.0014 3E-08 60.0 0.3 80 57-136 365-449 (975)
127 KOG4285 Mitotic phosphoprotein 96.1 0.046 9.9E-07 44.6 8.5 74 64-139 197-271 (350)
128 KOG4307 RNA binding protein RB 96.0 0.0066 1.4E-07 54.4 3.7 74 62-135 432-511 (944)
129 KOG2591 c-Mpl binding protein, 96.0 0.03 6.4E-07 49.2 7.4 71 62-133 173-247 (684)
130 KOG2253 U1 snRNP complex, subu 95.7 0.0082 1.8E-07 53.4 3.0 76 56-134 32-107 (668)
131 KOG2068 MOT2 transcription fac 95.7 0.0037 8.1E-08 51.4 0.7 74 64-137 77-162 (327)
132 PF15023 DUF4523: Protein of u 95.7 0.079 1.7E-06 38.7 7.3 78 58-137 80-161 (166)
133 KOG0128 RNA-binding protein SA 95.7 0.0055 1.2E-07 55.9 1.7 75 64-138 736-815 (881)
134 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.032 7E-07 42.5 5.4 76 62-137 5-97 (176)
135 PF03880 DbpA: DbpA RNA bindin 95.4 0.025 5.3E-07 36.7 3.6 67 66-135 2-74 (74)
136 KOG1365 RNA-binding protein Fu 94.9 0.22 4.8E-06 42.0 8.7 65 65-130 162-235 (508)
137 KOG4574 RNA-binding protein (c 94.8 0.018 3.9E-07 52.8 2.2 73 66-138 300-374 (1007)
138 PF07576 BRAP2: BRCA1-associat 94.7 0.44 9.6E-06 33.4 8.7 62 65-126 14-80 (110)
139 KOG0115 RNA-binding protein p5 94.3 0.051 1.1E-06 43.3 3.4 57 65-121 32-93 (275)
140 KOG0128 RNA-binding protein SA 94.2 0.002 4.3E-08 58.7 -5.2 63 64-126 667-735 (881)
141 PF11767 SET_assoc: Histone ly 91.6 1.6 3.5E-05 27.6 6.8 55 75-132 11-65 (66)
142 KOG2318 Uncharacterized conser 90.8 1.3 2.8E-05 39.5 7.6 75 61-135 171-305 (650)
143 KOG4019 Calcineurin-mediated s 89.1 0.36 7.7E-06 36.7 2.5 75 64-138 10-90 (193)
144 KOG4660 Protein Mei2, essentia 88.2 1.1 2.3E-05 39.7 5.2 41 100-140 431-475 (549)
145 KOG0804 Cytoplasmic Zn-finger 88.0 1.6 3.4E-05 37.8 6.0 63 64-126 74-141 (493)
146 KOG4210 Nuclear localization s 87.5 0.45 9.8E-06 39.1 2.4 75 62-136 86-166 (285)
147 KOG4410 5-formyltetrahydrofola 86.2 3.6 7.7E-05 33.7 6.8 48 64-111 330-378 (396)
148 PRK11634 ATP-dependent RNA hel 84.9 9.6 0.00021 35.0 9.8 69 65-136 487-561 (629)
149 PF10567 Nab6_mRNP_bdg: RNA-re 81.0 4.5 9.8E-05 33.2 5.4 79 58-136 9-106 (309)
150 KOG2193 IGF-II mRNA-binding pr 80.1 0.15 3.2E-06 43.6 -3.4 77 61-137 77-156 (584)
151 KOG1924 RhoA GTPase effector D 75.2 6.6 0.00014 36.6 5.3 8 110-117 490-497 (1102)
152 COG5638 Uncharacterized conser 70.6 26 0.00057 30.3 7.5 39 59-97 141-184 (622)
153 KOG4483 Uncharacterized conser 66.0 12 0.00027 32.1 4.6 55 63-118 390-445 (528)
154 PF00403 HMA: Heavy-metal-asso 64.0 29 0.00063 20.8 5.9 54 66-119 1-58 (62)
155 PF15513 DUF4651: Domain of un 61.4 18 0.00038 22.6 3.6 18 79-96 9-26 (62)
156 PRK14548 50S ribosomal protein 61.1 25 0.00054 23.3 4.6 53 67-119 23-80 (84)
157 KOG4676 Splicing factor, argin 61.0 1.1 2.3E-05 38.2 -2.4 61 65-126 152-214 (479)
158 PF02714 DUF221: Domain of unk 59.2 14 0.00029 30.6 3.9 36 103-140 1-36 (325)
159 TIGR03636 L23_arch archaeal ri 57.7 34 0.00074 22.3 4.7 54 66-119 15-73 (77)
160 PF07292 NID: Nmi/IFP 35 domai 56.2 7.9 0.00017 26.0 1.6 26 61-86 49-74 (88)
161 PF08544 GHMP_kinases_C: GHMP 54.5 53 0.0012 20.8 5.9 42 79-121 37-80 (85)
162 PF03439 Spt5-NGN: Early trans 51.3 38 0.00083 22.2 4.3 36 90-125 33-69 (84)
163 KOG2295 C2H2 Zn-finger protein 50.3 3.3 7.2E-05 36.8 -1.2 68 63-130 230-303 (648)
164 PF07530 PRE_C2HC: Associated 49.3 32 0.00069 21.8 3.5 57 79-138 2-65 (68)
165 COG2608 CopZ Copper chaperone 44.1 80 0.0017 19.8 5.3 45 65-109 4-48 (71)
166 KOG4365 Uncharacterized conser 40.0 3.8 8.3E-05 35.5 -2.3 72 65-137 4-81 (572)
167 COG5353 Uncharacterized protei 39.2 1.2E+02 0.0027 22.4 5.6 48 64-111 87-153 (161)
168 PTZ00191 60S ribosomal protein 38.5 86 0.0019 23.1 4.8 50 67-116 84-138 (145)
169 PF11411 DNA_ligase_IV: DNA li 38.5 21 0.00047 19.6 1.2 17 74-90 19-35 (36)
170 KOG1295 Nonsense-mediated deca 36.5 57 0.0012 27.9 4.0 62 64-125 7-77 (376)
171 COG1098 VacB Predicted RNA bin 36.4 80 0.0017 22.7 4.2 47 88-134 5-60 (129)
172 KOG4454 RNA binding protein (R 35.2 9.3 0.0002 30.2 -0.7 65 61-125 77-150 (267)
173 PF03468 XS: XS domain; Inter 33.9 90 0.002 21.9 4.2 41 77-118 30-75 (116)
174 smart00596 PRE_C2HC PRE_C2HC d 33.5 58 0.0013 20.7 2.8 55 79-136 2-63 (69)
175 KOG4008 rRNA processing protei 32.7 36 0.00078 27.2 2.1 36 60-95 36-71 (261)
176 COG0030 KsgA Dimethyladenosine 30.9 32 0.00069 27.9 1.6 33 64-96 95-127 (259)
177 COG0724 RNA-binding proteins ( 30.6 76 0.0017 24.2 3.8 42 58-99 219-260 (306)
178 PF09707 Cas_Cas2CT1978: CRISP 27.8 1.1E+02 0.0024 20.4 3.6 44 65-108 26-72 (86)
179 KOG2891 Surface glycoprotein [ 26.8 59 0.0013 26.7 2.5 34 65-98 150-195 (445)
180 PF11823 DUF3343: Protein of u 26.4 1E+02 0.0022 19.4 3.2 26 101-126 2-27 (73)
181 KOG0156 Cytochrome P450 CYP2 s 24.3 1.6E+02 0.0035 26.2 5.0 59 68-130 36-97 (489)
182 PRK08559 nusG transcription an 23.2 2.7E+02 0.0058 20.4 5.3 33 91-123 36-69 (153)
183 PF14893 PNMA: PNMA 22.9 59 0.0013 27.4 1.9 47 63-109 17-71 (331)
184 KOG3802 Transcription factor O 21.9 44 0.00096 28.7 1.0 20 5-24 244-270 (398)
185 PF08734 GYD: GYD domain; Int 21.5 2.5E+02 0.0055 18.5 5.4 43 78-120 22-67 (91)
186 cd04894 ACT_ACR-like_1 ACT dom 21.2 1.4E+02 0.003 18.8 2.8 31 79-109 15-46 (69)
187 PF15063 TC1: Thyroid cancer p 21.1 52 0.0011 21.3 1.0 29 63-91 24-52 (79)
188 cd04489 ExoVII_LU_OBF ExoVII_L 20.5 72 0.0016 19.9 1.6 22 89-111 6-27 (78)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=4.3e-20 Score=136.29 Aligned_cols=83 Identities=25% Similarity=0.549 Sum_probs=75.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.......++|||+||+++++|++|+++|++||.|.+++|+.+ ++||||+|.+.++|++|++.|++.+|+++.|+
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344556789999999999999999999999999999999753 79999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 029152 132 LSWGRNPAN 140 (198)
Q Consensus 132 v~~a~~~~~ 140 (198)
|+|++++..
T Consensus 108 V~~a~~~~~ 116 (144)
T PLN03134 108 VNPANDRPS 116 (144)
T ss_pred EEeCCcCCC
Confidence 999986544
No 2
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.81 E-value=1.5e-19 Score=145.64 Aligned_cols=127 Identities=37% Similarity=0.605 Sum_probs=106.6
Q ss_pred ccchhhhc--chhhhhhhhhhhhccCCCCcc--------------ccchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCe
Q 029152 3 KRRHCCER--KGEREERTLLYKLCFHRNSSY--------------CQFNIVFLLVLIGGYASNGAPGQGPQSEGDSSNTT 66 (198)
Q Consensus 3 ~~~~~c~~--~~~~~~~~~~~~~c~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (198)
++||||+| +++|+| ++.|+++|... ...+.+.+.+.......-+ .-.+..+...++
T Consensus 159 n~p~Icsf~v~geckR----G~ec~yrhEkp~d~~L~~qni~dryyg~ndPva~kil~ra~~~~----~lepPeD~~I~t 230 (377)
T KOG0153|consen 159 NRPHICSFFVKGECKR----GAECPYRHEKPPDDPLSLQNIKDRYYGLNDPVALKILNRAGSAG----TLEPPEDTSIKT 230 (377)
T ss_pred CCCccccceeeccccc----cccccccccCCCCcchhhcccccccccccChHHHHHHhhccccc----ccCCCcccceeE
Confidence 68999999 899999 99999999855 2344556656544433221 245667778899
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHh-CCceeCCeEeEEEeccC
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a~~ 137 (198)
|||++|...++|.+|+++|.+||+|+.|.+...++||||+|.++++|+.|.+++ +...|+|.+|+|.|+++
T Consensus 231 LyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 231 LYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred EEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999988755 66778999999999998
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.7e-18 Score=132.69 Aligned_cols=82 Identities=35% Similarity=0.689 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
....+.++||||||+..++|++|++.|+.||.|.+|+|.+++||+||.|++.|+|..||..+|+.+|+|..+++.|.+..
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 029152 139 AN 140 (198)
Q Consensus 139 ~~ 140 (198)
..
T Consensus 239 ~~ 240 (321)
T KOG0148|consen 239 DD 240 (321)
T ss_pred CC
Confidence 54
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=1.6e-17 Score=138.65 Aligned_cols=79 Identities=29% Similarity=0.529 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCC--eEeEEE
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLS 133 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 133 (198)
...++|||+|||+.++|++|+++|++||+|++++|+++ |+||||+|.+.++|++||+.||+..+.+ +.|+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 34678999999999999999999999999999999875 4899999999999999999999999865 689999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
|++....
T Consensus 271 ~a~~~~~ 277 (346)
T TIGR01659 271 LAEEHGK 277 (346)
T ss_pred ECCcccc
Confidence 9986544
No 5
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=8.2e-17 Score=118.88 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
..++||||||+..+++.+|+.+|..||.|..|-|... .|||||||+++.+|+.|+..|+|..|.|..|+|++++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 4789999999999999999999999999999988764 59999999999999999999999999999999999986544
No 6
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=6.4e-17 Score=120.54 Aligned_cols=78 Identities=22% Similarity=0.455 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
...++|||+|||.+|.|.+|+++|.+||.|.+|+|... -.||||+|++..+|+.||..-++..++|..|+|++++.-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 34789999999999999999999999999999998664 379999999999999999999999999999999999864
Q ss_pred C
Q 029152 139 A 139 (198)
Q Consensus 139 ~ 139 (198)
.
T Consensus 84 r 84 (241)
T KOG0105|consen 84 R 84 (241)
T ss_pred C
Confidence 3
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=4.1e-17 Score=114.71 Aligned_cols=77 Identities=29% Similarity=0.607 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCC------cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~k------g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
...+++|||+||+..++|+.|.++|+++|+|+.|-+..+| |||||+|.+.++|+.|++.+++..++.+.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3457899999999999999999999999999999886653 9999999999999999999999999999999999
Q ss_pred ccC
Q 029152 135 GRN 137 (198)
Q Consensus 135 a~~ 137 (198)
...
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 764
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.2e-16 Score=132.73 Aligned_cols=84 Identities=27% Similarity=0.521 Sum_probs=76.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
++.+.....+.|||+||+.++||+.|+++|++||.|++|+.++ .||||.|.++++|.+|++.+|+++|+|..|.|.+|
T Consensus 251 ~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 251 PDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred CChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--ceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 3444556678999999999999999999999999999998884 59999999999999999999999999999999999
Q ss_pred cCCCCC
Q 029152 136 RNPANK 141 (198)
Q Consensus 136 ~~~~~~ 141 (198)
+++..+
T Consensus 329 KP~~k~ 334 (506)
T KOG0117|consen 329 KPVDKK 334 (506)
T ss_pred CChhhh
Confidence 987654
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=2e-16 Score=132.63 Aligned_cols=77 Identities=35% Similarity=0.572 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
...+|||+|||+++++++|+++|++||.|.+++|+++ ||||||+|.+.++|.+|+..|||..|+|+.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 3457999999999999999999999999999999864 7999999999999999999999999999999999998
Q ss_pred CCC
Q 029152 137 NPA 139 (198)
Q Consensus 137 ~~~ 139 (198)
++.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 754
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=1.6e-16 Score=132.65 Aligned_cols=79 Identities=27% Similarity=0.511 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
......++|||+|||++++|++|+++|++||+|++|+|+++ ++||||+|.++++|++||+.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45557889999999999999999999999999999999764 599999999999999999999999999999999
Q ss_pred EeccC
Q 029152 133 SWGRN 137 (198)
Q Consensus 133 ~~a~~ 137 (198)
.|+++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 99865
No 11
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.2e-16 Score=123.57 Aligned_cols=79 Identities=28% Similarity=0.545 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
...+..+|-|.||+.+++|++|+++|.+||.|.++.|.++ ||||||+|.++++|.+||+.|||+-+++..|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3446789999999999999999999999999999999874 7999999999999999999999999999999999
Q ss_pred eccCC
Q 029152 134 WGRNP 138 (198)
Q Consensus 134 ~a~~~ 138 (198)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99985
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=1.1e-16 Score=128.40 Aligned_cols=81 Identities=26% Similarity=0.471 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
......++|+|.|||+...|-||+.+|++||+|.+|+|+. +|||+||+|++.++|++|-++|||..|.||+|+|..
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3344568999999999999999999999999999999998 489999999999999999999999999999999999
Q ss_pred ccCCC
Q 029152 135 GRNPA 139 (198)
Q Consensus 135 a~~~~ 139 (198)
|..+.
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 97643
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.69 E-value=5.5e-16 Score=136.20 Aligned_cols=79 Identities=25% Similarity=0.479 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccC--CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~--G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
....++|||+||+++++|++|+++|++| |+|++|+++ ++||||+|++.++|++|++.||+.+|+|+.|+|+|++++
T Consensus 230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 3446789999999999999999999999 999999886 579999999999999999999999999999999999886
Q ss_pred CCC
Q 029152 139 ANK 141 (198)
Q Consensus 139 ~~~ 141 (198)
...
T Consensus 308 ~~~ 310 (578)
T TIGR01648 308 DKK 310 (578)
T ss_pred Ccc
Confidence 543
No 14
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=2.5e-16 Score=101.48 Aligned_cols=65 Identities=48% Similarity=0.847 Sum_probs=61.9
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
|||+|||+++++++|+++|++||.|..+++..+ +++|||+|.+.++|++|++.|++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999998873 69999999999999999999999999999885
No 15
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=6.2e-16 Score=129.60 Aligned_cols=77 Identities=34% Similarity=0.597 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
+.++|||+|||..++|++|+++|++||+|.+|+|+++ +|||||+|.+.++|++||+.||+..|.|+.|+|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3678999999999999999999999999999999864 5899999999999999999999999999999999997
Q ss_pred CCC
Q 029152 137 NPA 139 (198)
Q Consensus 137 ~~~ 139 (198)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.8e-15 Score=119.93 Aligned_cols=73 Identities=29% Similarity=0.417 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
.++|||+||++.++|++|+++|+.||+|.+|+|+.+ ++||||+|.++++|+.||. |++..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 579999999999999999999999999999999875 5999999999999999996 999999999999999874
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=6.1e-15 Score=131.01 Aligned_cols=79 Identities=34% Similarity=0.639 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.....+|||+||++.+++++|+++|++||.|++++++.+ +|||||+|.+.++|++|++.||+..++|+.|.|.+|
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 335678999999999999999999999999999999764 699999999999999999999999999999999999
Q ss_pred cCCC
Q 029152 136 RNPA 139 (198)
Q Consensus 136 ~~~~ 139 (198)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8654
No 18
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=3.5e-15 Score=113.05 Aligned_cols=81 Identities=30% Similarity=0.568 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
+++.....+|-|-||...++.++|+.+|++||.|-+|.|..+ +|||||.|.+..+|+.|++.|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 444455678999999999999999999999999999999885 69999999999999999999999999999999
Q ss_pred EEeccCC
Q 029152 132 LSWGRNP 138 (198)
Q Consensus 132 v~~a~~~ 138 (198)
|.+|+-.
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9999743
No 19
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=7.1e-15 Score=113.36 Aligned_cols=77 Identities=35% Similarity=0.548 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
.+..-++||||+|+|++..++|+++|++||+|++..|+.| |||+||+|.|.++|++|++. ...+|+||+-.|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 4455789999999999999999999999999999988764 79999999999999999985 5578999999999
Q ss_pred eccC
Q 029152 134 WGRN 137 (198)
Q Consensus 134 ~a~~ 137 (198)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8753
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=1.3e-14 Score=93.80 Aligned_cols=65 Identities=37% Similarity=0.727 Sum_probs=59.7
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
|||+|||+++++++|+++|+.||.|..+++..+ +++|||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999886 59999999999999999999999999999875
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.6e-15 Score=125.62 Aligned_cols=83 Identities=30% Similarity=0.566 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCce-eCC--eEeEEE
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTV-IGK--QSVRLS 133 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~ 133 (198)
.++++||||-|+..++|.+++++|++||.|++|.|++ +||||||.|.+++.|..||+.||+.. +.| ..|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 3478999999999999999999999999999999988 48999999999999999999999875 454 489999
Q ss_pred eccCCCCCCCC
Q 029152 134 WGRNPANKQFR 144 (198)
Q Consensus 134 ~a~~~~~~~~~ 144 (198)
||++++.+..+
T Consensus 202 FADtqkdk~~~ 212 (510)
T KOG0144|consen 202 FADTQKDKDGK 212 (510)
T ss_pred ecccCCCchHH
Confidence 99988776543
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.56 E-value=2.3e-14 Score=125.11 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHh--CCceeCCeEeEEEeccCC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL--NGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~a~~~ 138 (198)
++++|||+|||+.++|++|+++|++||.|.+|.|+++|+||||+|.+.++|++|++.+ ++..|+|+.|.|.|+..+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 3678999999999999999999999999999999999999999999999999999864 788999999999998643
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=1.5e-14 Score=121.87 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC--CcEEEEEeCCH--HHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANR--ENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
....+||||||++.+++++|+.+|..||.|.+|.|++. ||||||+|.+. .++.+||..||+.+|.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34579999999999999999999999999999999974 79999999987 689999999999999999999999876
No 24
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=4.2e-14 Score=112.40 Aligned_cols=84 Identities=21% Similarity=0.462 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
..+-+||||+.|+.+++|.+|+..|++||.|+.|+|+.+ +|||||+|+++.+...|.+..++..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 356789999999999999999999999999999999874 79999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 029152 135 GRNPANKQFR 144 (198)
Q Consensus 135 a~~~~~~~~~ 144 (198)
-+.+..+.+.
T Consensus 178 ERgRTvkgW~ 187 (335)
T KOG0113|consen 178 ERGRTVKGWL 187 (335)
T ss_pred cccccccccc
Confidence 8877666543
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=3.4e-14 Score=125.37 Aligned_cols=78 Identities=26% Similarity=0.546 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..++|||+||++++++++|+++|+.||.|++++|.+ +||||||+|.+.++|.+||+.||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999976 37999999999999999999999999999999999998
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
++..
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 6543
No 26
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=3.8e-14 Score=110.79 Aligned_cols=75 Identities=28% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
....+|||+||++.++|++|+++|+.||+|.+|+|+++ ++||||+|.++++|+.|+. |+|..|.++.|.|.....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 34689999999999999999999999999999999986 4899999999999999995 999999999999987653
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=5.7e-14 Score=89.81 Aligned_cols=68 Identities=50% Similarity=0.894 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCC----cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~k----g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
+|||+|||..+++++|+++|.+||.|..+.+..++ ++|||+|.+.+.|++|++.+++..+.++.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998865 999999999999999999999999999998874
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=3.3e-14 Score=125.08 Aligned_cols=81 Identities=22% Similarity=0.384 Sum_probs=70.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeC-CeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIG-KQS 129 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~-g~~ 129 (198)
+........++|||+|||++++|++|+++|++||.|.+++|++ +|+||||+|.+.++|++||+.||+.+|. ++.
T Consensus 50 ~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~ 129 (578)
T TIGR01648 50 WSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL 129 (578)
T ss_pred ccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc
Confidence 3333344578999999999999999999999999999999975 4799999999999999999999999885 777
Q ss_pred eEEEecc
Q 029152 130 VRLSWGR 136 (198)
Q Consensus 130 l~v~~a~ 136 (198)
|.|.++.
T Consensus 130 l~V~~S~ 136 (578)
T TIGR01648 130 LGVCISV 136 (578)
T ss_pred ccccccc
Confidence 7777654
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.53 E-value=6.3e-14 Score=122.35 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 61 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 61 ~~~~~~lfV~~l~~-~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
....++|||+||++ .+++++|+++|++||.|.+|+|+++ ++||||+|.+.++|+.|+..||+..|.|+.|+|++++.+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 34678999999998 6999999999999999999999876 699999999999999999999999999999999998764
Q ss_pred C
Q 029152 139 A 139 (198)
Q Consensus 139 ~ 139 (198)
.
T Consensus 352 ~ 352 (481)
T TIGR01649 352 N 352 (481)
T ss_pred c
Confidence 3
No 30
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=113.84 Aligned_cols=73 Identities=27% Similarity=0.585 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 139 (198)
.+|||||||.++++.+|+.+|++||+|++++|+ |.|+||..++...|+.||++||+..|+|..|+|+-+++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 479999999999999999999999999999998 5699999999999999999999999999999999998873
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=5.6e-14 Score=123.97 Aligned_cols=75 Identities=24% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
...++|||+||++.+++++|+++|++||.|.+|+|+. ++|||||+|.+.++|++|++.||+..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999999975 4799999999999999999999999999999999875
Q ss_pred c
Q 029152 136 R 136 (198)
Q Consensus 136 ~ 136 (198)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 32
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.51 E-value=1.8e-13 Score=84.72 Aligned_cols=55 Identities=36% Similarity=0.667 Sum_probs=51.9
Q ss_pred HHHHhccCCceEEEEEeCCC-cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 81 LRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 81 l~~~F~~~G~i~~v~i~~~k-g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
|.++|++||+|.++.+..++ ++|||+|.+.++|+.|++.||+..+.|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999987 99999999999999999999999999999999986
No 33
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.9e-14 Score=110.10 Aligned_cols=82 Identities=29% Similarity=0.622 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
....++||||+|..+++|..|...|-.||.|++|+++.+ |+|+||+|...|+|.+||..||+.+|-|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 345689999999999999999999999999999999874 79999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 029152 135 GRNPANKQ 142 (198)
Q Consensus 135 a~~~~~~~ 142 (198)
|+|.+-+.
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99876543
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=1.4e-13 Score=119.40 Aligned_cols=75 Identities=33% Similarity=0.686 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..++|||+|||..+++++|+++|++||.|..|.|+. +++||||+|.+.++|.+|++.|++..|.|+.|+|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 368999999999999999999999999999999984 46999999999999999999999999999999999986
Q ss_pred C
Q 029152 137 N 137 (198)
Q Consensus 137 ~ 137 (198)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 4
No 35
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=2.5e-13 Score=92.35 Aligned_cols=76 Identities=21% Similarity=0.422 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
...+.|||.|||..+|.++..++|.+||.|..|+|... +|-|||.|++..+|.+|++.|.|..+.++.|.|-+-.+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34678999999999999999999999999999999764 79999999999999999999999999999999887544
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.49 E-value=1.5e-13 Score=122.09 Aligned_cols=72 Identities=35% Similarity=0.716 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
+|||+|||.+++|++|+++|++||.|.+|+|.++ +|||||+|.+.++|++|++.|++..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 6999999999999999999999999999999764 58999999999999999999999999999999999864
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.48 E-value=3.4e-13 Score=118.39 Aligned_cols=76 Identities=17% Similarity=0.430 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..++|||+|||..+++++|+++|+.||.|..+.|++ ++|||||+|.+.++|+.||+.|++..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999999876 37999999999999999999999999999999999997
Q ss_pred CC
Q 029152 137 NP 138 (198)
Q Consensus 137 ~~ 138 (198)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 54
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=3.6e-13 Score=112.19 Aligned_cols=88 Identities=25% Similarity=0.462 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCC
Q 029152 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNG 122 (198)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~ 122 (198)
-+++++.+........+-||||.||.++.|++|..+|++.|+|-+++|+.+ ||||||+|.+.+.|+.||+.||+
T Consensus 68 ~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn 147 (506)
T KOG0117|consen 68 YGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN 147 (506)
T ss_pred cCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC
Confidence 334444465566678899999999999999999999999999999999885 79999999999999999999999
Q ss_pred ceeC-CeEeEEEecc
Q 029152 123 TVIG-KQSVRLSWGR 136 (198)
Q Consensus 123 ~~~~-g~~l~v~~a~ 136 (198)
++|. |+.|.|+.+.
T Consensus 148 ~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 148 YEIRPGKLLGVCVSV 162 (506)
T ss_pred ccccCCCEeEEEEee
Confidence 9985 8888888653
No 39
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.6e-13 Score=97.58 Aligned_cols=83 Identities=29% Similarity=0.563 Sum_probs=75.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~ 129 (198)
+.+..+.....|||.++.+..+|++|.+.|..||+|+.|++..+ ||||+|+|++.+.|++|+..+|+..|-+..
T Consensus 64 pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 64 PGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 34566667889999999999999999999999999999999765 699999999999999999999999999999
Q ss_pred eEEEeccCC
Q 029152 130 VRLSWGRNP 138 (198)
Q Consensus 130 l~v~~a~~~ 138 (198)
|.|.|+--+
T Consensus 144 v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 VSVDWCFVK 152 (170)
T ss_pred eeEEEEEec
Confidence 999998643
No 40
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.45 E-value=6.8e-13 Score=115.05 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
...+.++|||+|||..+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++||. |++..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3455789999999999999999999999999999999864 6999999999999999997 89999999999999
Q ss_pred eccCC
Q 029152 134 WGRNP 138 (198)
Q Consensus 134 ~a~~~ 138 (198)
++...
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 87543
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=1.2e-12 Score=84.00 Aligned_cols=69 Identities=48% Similarity=0.877 Sum_probs=64.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
+|+|+|||..+++++|+++|..+|.|..+.+..+ +++|||+|.+.++|..|++.+++..++++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999998875 58999999999999999999999999999999875
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.3e-13 Score=104.55 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCC------cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~k------g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
.+...+.|.|.-||.++|+++|+.+|...|+|+++++++|| ||+||.|-++++|++|+..|||..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 44556789999999999999999999999999999999975 999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
+|++...
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998554
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.5e-13 Score=111.27 Aligned_cols=82 Identities=27% Similarity=0.607 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCce-eC--CeEe
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTV-IG--KQSV 130 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~-~~--g~~l 130 (198)
.+.+.-+|||+.||..++|.||+++|++||.|.+|.|++| +|||||.|.++++|.+|+..||... |- ...|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3456679999999999999999999999999999999996 5999999999999999999998765 43 5588
Q ss_pred EEEeccCCCCC
Q 029152 131 RLSWGRNPANK 141 (198)
Q Consensus 131 ~v~~a~~~~~~ 141 (198)
.|++|+...++
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 99998765443
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.3e-12 Score=102.89 Aligned_cols=77 Identities=36% Similarity=0.827 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
..-|||+-|...|+.++|++.|.+||+|.+.+|++| |||+||.|-.+++|+.||..|||.-|++|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 458999999999999999999999999999999884 89999999999999999999999999999999999976
Q ss_pred CCC
Q 029152 138 PAN 140 (198)
Q Consensus 138 ~~~ 140 (198)
+..
T Consensus 142 Kp~ 144 (321)
T KOG0148|consen 142 KPS 144 (321)
T ss_pred Ccc
Confidence 554
No 45
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.39 E-value=8.3e-13 Score=116.28 Aligned_cols=78 Identities=33% Similarity=0.741 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCCC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~ 141 (198)
++|||||+|+.+++|.+|..+|+.||+|.+|.++..++||||.+..+++|++|+.+|+.+.+.++.|+|.||..+.-+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999865544
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=2e-12 Score=82.12 Aligned_cols=65 Identities=43% Similarity=0.787 Sum_probs=60.0
Q ss_pred EcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 69 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 69 V~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
|+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|..|++.+++..++++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988775 4799999999999999999999999999998874
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=2.6e-12 Score=102.23 Aligned_cols=73 Identities=37% Similarity=0.695 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..+|||+|||..+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|..|++.+++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999999999999999999999999988765 5999999999999999999999999999999999965
No 48
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.36 E-value=1.1e-12 Score=97.64 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
....+|||+||+..++++.|.++|-+.|.|.+++++++ +|||||+|.++|+|+-|++.||...|-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34679999999999999999999999999999999885 599999999999999999999999999999999998
Q ss_pred c
Q 029152 136 R 136 (198)
Q Consensus 136 ~ 136 (198)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 49
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=2.3e-12 Score=109.75 Aligned_cols=77 Identities=31% Similarity=0.582 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
+.|||||+|++++|++|..+|+..|.|.+++++.| |||+|++|.+.++|+.|++.||+.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999875 699999999999999999999999999999999999876
Q ss_pred CCC
Q 029152 139 ANK 141 (198)
Q Consensus 139 ~~~ 141 (198)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 553
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=3.7e-12 Score=108.62 Aligned_cols=77 Identities=29% Similarity=0.549 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
...+|.|+|||+.+.+.+|+.+|+.||.|.+|.|++. .|||||.|....+|+.|++.+|+..|+|+.|-|.||-+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 3679999999999999999999999999999999874 49999999999999999999999999999999999976
Q ss_pred CC
Q 029152 138 PA 139 (198)
Q Consensus 138 ~~ 139 (198)
+.
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 43
No 51
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=2.1e-13 Score=101.55 Aligned_cols=77 Identities=29% Similarity=0.490 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
.-.++.-|||||||+..||.+|.-+|++||+|+.|.++++ +||||+.|++..+..-|+..|||..|.|+.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 3445678999999999999999999999999999999985 6999999999999999999999999999999998
Q ss_pred ecc
Q 029152 134 WGR 136 (198)
Q Consensus 134 ~a~ 136 (198)
-..
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 653
No 52
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.33 E-value=8e-12 Score=109.72 Aligned_cols=77 Identities=21% Similarity=0.411 Sum_probs=67.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccC------------CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQY------------GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~------------G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
......++|||+|||+.+++++|+++|.++ +.|..+.+..+++||||+|.+.++|..||. |++..|.
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 345567899999999999999999999874 457777888889999999999999999995 9999999
Q ss_pred CeEeEEEecc
Q 029152 127 KQSVRLSWGR 136 (198)
Q Consensus 127 g~~l~v~~a~ 136 (198)
|+.|+|....
T Consensus 249 g~~l~v~r~~ 258 (509)
T TIGR01642 249 NVFLKIRRPH 258 (509)
T ss_pred CceeEecCcc
Confidence 9999997543
No 53
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.7e-12 Score=103.05 Aligned_cols=85 Identities=27% Similarity=0.577 Sum_probs=77.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCC------cEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQS 129 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~k------g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 129 (198)
+..+..++...|||-.|++.++.++|+-+|+.||.|.++.|++++ .||||+|++.+++++|.-+|+...|++++
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 455667778899999999999999999999999999999999964 79999999999999999999999999999
Q ss_pred eEEEeccCCCC
Q 029152 130 VRLSWGRNPAN 140 (198)
Q Consensus 130 l~v~~a~~~~~ 140 (198)
|+|.|+.+-..
T Consensus 311 IHVDFSQSVsk 321 (479)
T KOG0415|consen 311 IHVDFSQSVSK 321 (479)
T ss_pred EEeehhhhhhh
Confidence 99999876544
No 54
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=2.6e-11 Score=101.15 Aligned_cols=75 Identities=23% Similarity=0.451 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhc-cCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~-~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..+.+||.|||++..+.+|+++|. +.|+|+.|++..+ |+||.|||+++|.+++|++.||.+++.|+.|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456699999999999999999995 6899999999874 7999999999999999999999999999999999765
Q ss_pred C
Q 029152 137 N 137 (198)
Q Consensus 137 ~ 137 (198)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=3.1e-11 Score=94.75 Aligned_cols=79 Identities=33% Similarity=0.555 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
.......|||-||.++++|..|-++|..||.|..|+|++| |||+||++.+-++|..||..|||+.++++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 3344789999999999999999999999999999999985 7999999999999999999999999999999999
Q ss_pred eccCC
Q 029152 134 WGRNP 138 (198)
Q Consensus 134 ~a~~~ 138 (198)
|...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 97654
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=8.1e-12 Score=99.27 Aligned_cols=78 Identities=27% Similarity=0.516 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
+...++|+|+||.+.++.++|+..|++||.|.+++|+ |+|+||.|+-.++|..|++.|++.+++|++|+|.++.++-.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 4567899999999999999999999999999999998 57999999999999999999999999999999999876543
No 57
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.22 E-value=7.8e-11 Score=99.94 Aligned_cols=78 Identities=29% Similarity=0.440 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----C--cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K--GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----k--g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
...+|||.|||.++++++|+++|.+||.|+...|... + .||||+|.+.++++.||.. +-..|++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 4456999999999999999999999999999877552 2 8999999999999999985 5778999999999987
Q ss_pred CCCCC
Q 029152 137 NPANK 141 (198)
Q Consensus 137 ~~~~~ 141 (198)
....+
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 65443
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.7e-11 Score=96.48 Aligned_cols=82 Identities=29% Similarity=0.469 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
...++.|.|||-.||.+..+.+|..+|-.||.|.+.++..| |.|+||.|+++.+|+.||..|||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34567899999999999999999999999999999888664 799999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029152 133 SWGRNPAN 140 (198)
Q Consensus 133 ~~a~~~~~ 140 (198)
.+.+++..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 99988754
No 59
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.4e-11 Score=100.76 Aligned_cols=72 Identities=25% Similarity=0.585 Sum_probs=67.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.++||||.|.+++.|+.|+..|..||.|++|.+.. .|+||||+|+-+|.|+-|++.||+..++|+.|+|..-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 68899999999999999999999999999998865 3899999999999999999999999999999999743
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.18 E-value=9.3e-11 Score=90.33 Aligned_cols=78 Identities=26% Similarity=0.521 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhccCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQ----PFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~----~F~~~G~i~~v~i~~---~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
+..||||.||++.+..++|++ +|++||.|.+|...+ -||-|||.|.+.+.|-.|++.|+|..+-|+.++|.+|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 345999999999999999988 999999999998765 4799999999999999999999999999999999999
Q ss_pred cCCCC
Q 029152 136 RNPAN 140 (198)
Q Consensus 136 ~~~~~ 140 (198)
+....
T Consensus 88 ~s~sd 92 (221)
T KOG4206|consen 88 KSDSD 92 (221)
T ss_pred cCccc
Confidence 87655
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=2.8e-11 Score=95.36 Aligned_cols=80 Identities=25% Similarity=0.572 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeC---CeEeEEEe
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIG---KQSVRLSW 134 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~ 134 (198)
++++||||-|...-.|+|++++|..||.|.++.+.+ +|||+||.|.+.-+|+.||..||+.... ...|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 678999999999999999999999999999999987 5899999999999999999999998652 56899999
Q ss_pred ccCCCCCC
Q 029152 135 GRNPANKQ 142 (198)
Q Consensus 135 a~~~~~~~ 142 (198)
++..+++.
T Consensus 98 ADTdkER~ 105 (371)
T KOG0146|consen 98 ADTDKERT 105 (371)
T ss_pred ccchHHHH
Confidence 98776654
No 62
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.7e-10 Score=74.74 Aligned_cols=56 Identities=30% Similarity=0.612 Sum_probs=49.2
Q ss_pred HHHHHHHhc----cCCceEEEE-EeC--------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 78 DEDLRQPFS----QYGEIASVK-IPV--------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 78 e~~l~~~F~----~~G~i~~v~-i~~--------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
+++|+++|+ +||.|.+|. |.. ++||+||+|.+.++|.+|++.||+..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 999999885 322 37999999999999999999999999999999863
No 63
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.1e-10 Score=99.66 Aligned_cols=77 Identities=27% Similarity=0.390 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
..||||++||+.++.++|.++|+.+|.|..+.++. .|||+||+|.-.++++.|+..++...++|+.|+|+.|+.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999998876 379999999999999999999999999999999999976
Q ss_pred CCC
Q 029152 138 PAN 140 (198)
Q Consensus 138 ~~~ 140 (198)
+..
T Consensus 85 R~r 87 (678)
T KOG0127|consen 85 RAR 87 (678)
T ss_pred ccc
Confidence 543
No 64
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.12 E-value=9.8e-11 Score=100.05 Aligned_cols=73 Identities=34% Similarity=0.638 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
+|||+||..+++|++|+.+|+.||.|..|.++++ |||+||+|.+.++|.+|++.||+.+|-|+.|+|.....+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3999999999999999999999999999998874 799999999999999999999999999999999876543
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.2e-10 Score=95.59 Aligned_cols=73 Identities=32% Similarity=0.611 Sum_probs=68.1
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
|||.||++.++..+|.++|+.||+|++|++..+ +|| ||+|+++++|++|++.+||..+.++.|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999999999999999999999999999999874 799 9999999999999999999999999999988765444
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.10 E-value=2.3e-10 Score=85.40 Aligned_cols=84 Identities=30% Similarity=0.532 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEE-EEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v-~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....+.+|||+||.++++|..|.+.|+.||.+... ++++ .++|+||.|++.+.+.+|++.+|+..+..++|.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 334445899999999999999999999999987653 4444 368999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 029152 132 LSWGRNPANKQ 142 (198)
Q Consensus 132 v~~a~~~~~~~ 142 (198)
|+++..+..++
T Consensus 171 v~ya~k~~~kg 181 (203)
T KOG0131|consen 171 VSYAFKKDTKG 181 (203)
T ss_pred EEEEEecCCCc
Confidence 99998765443
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=4.3e-10 Score=98.67 Aligned_cols=72 Identities=39% Similarity=0.594 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
++|||.||++.++.++|+.+|.+.|.|.++.|.+. .|||||+|.+.++|+.|++.|+|+.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999988763 399999999999999999999999999999999999
Q ss_pred c
Q 029152 136 R 136 (198)
Q Consensus 136 ~ 136 (198)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=7.6e-10 Score=95.19 Aligned_cols=79 Identities=22% Similarity=0.462 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
....+.|||.+|+..+...+|+.+|++||+|+-.+|+.+ +.|+||++.+.++|.++|+.||.++|+|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 344679999999999999999999999999999888764 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 029152 135 GRNPA 139 (198)
Q Consensus 135 a~~~~ 139 (198)
+++..
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 88643
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=2.9e-09 Score=87.37 Aligned_cols=79 Identities=29% Similarity=0.502 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
...+|||++||..+++++|+++|.+||.|..+.++.+ ++|+||+|.+++++++++. .+-+.|.++.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 4669999999999999999999999999999888764 6999999999999999987 58889999999999998
Q ss_pred CCCCCC
Q 029152 137 NPANKQ 142 (198)
Q Consensus 137 ~~~~~~ 142 (198)
++....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 866544
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.00 E-value=4.5e-10 Score=92.07 Aligned_cols=77 Identities=30% Similarity=0.522 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
+.++|||++|+|+++++.|+++|.+||+|.++.++++ ++|+||+|++.+.+.+++. ..-+.|+++.|.++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6889999999999999999999999999999999884 6999999999999888876 45678999999999887
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 6554
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=5.6e-10 Score=86.59 Aligned_cols=72 Identities=25% Similarity=0.588 Sum_probs=67.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
.++||++||+.+.+.+|+++|..||.|.++.+. .+|+||+|.+..+|+.|+..||+.+|.+..+.|+|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999998874 589999999999999999999999999999999999864
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=9e-10 Score=96.66 Aligned_cols=79 Identities=27% Similarity=0.554 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
....++|+|.|||+..+-.+++.+|..||.|++|+|++. +|||||+|-++.+|.+|++.|..+.+-|++|.++|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 334679999999999999999999999999999999874 79999999999999999999999999999999999
Q ss_pred ccCCC
Q 029152 135 GRNPA 139 (198)
Q Consensus 135 a~~~~ 139 (198)
|+...
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 98643
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.96 E-value=2.5e-09 Score=89.48 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=68.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.......++|||.|||.++|++.|++-|..||.|+.++|+.. +..+.|.|.++++|+.|+..|++..|+|+.|+|.+.
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 344556788999999999999999999999999999988542 445599999999999999999999999999999863
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.95 E-value=1.2e-08 Score=78.73 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=66.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-C------CcEEEEEeCCHHHHHHHHHHhCCceeC---CeE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-G------KGCGFVQFANRENAEEALHKLNGTVIG---KQS 129 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-~------kg~afV~f~~~~~a~~a~~~l~~~~~~---g~~ 129 (198)
.....+||||.+||.++-..+|..+|..|-.-+...|.. + +-+|||+|.+...|++|+..|||..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 344578999999999999999999999884333333321 2 379999999999999999999999997 789
Q ss_pred eEEEeccCCCCC
Q 029152 130 VRLSWGRNPANK 141 (198)
Q Consensus 130 l~v~~a~~~~~~ 141 (198)
|+|++|+.....
T Consensus 110 LhiElAKSNtK~ 121 (284)
T KOG1457|consen 110 LHIELAKSNTKR 121 (284)
T ss_pred eEeeehhcCccc
Confidence 999999865543
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.91 E-value=5.3e-09 Score=91.92 Aligned_cols=80 Identities=40% Similarity=0.824 Sum_probs=73.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC---------CCcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQ 128 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~---------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~ 128 (198)
.+.++..+.|||+||++.++|+.|...|..||.|..|+|+. .+.|+||.|-++.+|++|++.|++..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 34467788999999999999999999999999999999976 258999999999999999999999999999
Q ss_pred EeEEEeccC
Q 029152 129 SVRLSWGRN 137 (198)
Q Consensus 129 ~l~v~~a~~ 137 (198)
.+++-|++.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999999975
No 76
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.88 E-value=8.1e-09 Score=78.66 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccC-CceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~-G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
+......-++|..+|.-+.+.+|..+|.+| |.|+.+++.+ +||||||+|++++.|+-|-+.||++.+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 334455678999999999999999999998 7888888865 479999999999999999999999999999999
Q ss_pred EEeccCC
Q 029152 132 LSWGRNP 138 (198)
Q Consensus 132 v~~a~~~ 138 (198)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987664
No 77
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=7.1e-09 Score=85.09 Aligned_cols=77 Identities=26% Similarity=0.544 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
.-.+|||..+.++.+|+||+..|+.||+|+.|.+.+ .|||+||+|.+..+...||..||-..++|..|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 347999999999999999999999999999999976 37999999999999999999999999999999998775
Q ss_pred CCC
Q 029152 137 NPA 139 (198)
Q Consensus 137 ~~~ 139 (198)
.+.
T Consensus 289 TPP 291 (544)
T KOG0124|consen 289 TPP 291 (544)
T ss_pred CCC
Confidence 443
No 78
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=4.7e-09 Score=90.08 Aligned_cols=74 Identities=32% Similarity=0.488 Sum_probs=67.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
...+....+|+|-|||..+++++|+++|+.||+|+.|+..+ .++.+||+|-|..+|+.|++.|++.++.|++|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33455678999999999999999999999999999987755 469999999999999999999999999999988
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.9e-08 Score=84.87 Aligned_cols=71 Identities=30% Similarity=0.589 Sum_probs=65.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
..|||| +++||..|.++|+.+|+|.+|++.++ -|||||.|.++++|++|++.+|-..+.|+.|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 89999999999999999999998775 599999999999999999999999999999999998643
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.77 E-value=3.5e-08 Score=78.18 Aligned_cols=81 Identities=27% Similarity=0.504 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.+....+|+|.||+..+++++|+++|..||.++.+-|..+ .|.|-|.|...++|+.|++.+++..++|+.|++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3444578999999999999999999999999888888764 49999999999999999999999999999999998
Q ss_pred ccCCCC
Q 029152 135 GRNPAN 140 (198)
Q Consensus 135 a~~~~~ 140 (198)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 765443
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=1.2e-08 Score=78.52 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCC----cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~k----g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..++|||+|+...++|+.|.++|-+-|.|.+|.|...+ .||||+|.++.++.-|++.+||..+.+..|+|.+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 46789999999999999999999999999999997642 599999999999999999999999999988888754
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=1.4e-07 Score=74.68 Aligned_cols=80 Identities=28% Similarity=0.476 Sum_probs=72.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
...+.+...+||+|+...++-++++.+|+.||.|..+.|..+ |+|+||+|.+.+.++.++. |++..|.++.++
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 356677889999999999998889999999999988877663 6899999999999999999 999999999999
Q ss_pred EEeccCC
Q 029152 132 LSWGRNP 138 (198)
Q Consensus 132 v~~a~~~ 138 (198)
|.+.+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9998765
No 83
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.63 E-value=1.3e-06 Score=72.16 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCC--CCCCHHHHHHHhccCCceEEEEEeCCCcE-EEEEeCCHHHHHHHHHHhCCcee--CCeEeEEEecc
Q 029152 62 SSNTTIFVGGLD--PNVTDEDLRQPFSQYGEIASVKIPVGKGC-GFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGR 136 (198)
Q Consensus 62 ~~~~~lfV~~l~--~~~~e~~l~~~F~~~G~i~~v~i~~~kg~-afV~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~a~ 136 (198)
...+.|.+.=|. +.||.+.|..+....|+|.+|.|.+..+. |.|||++.+.|++|.+.|||..| +-..|+|++|+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 344555555444 46999999999999999999999887665 99999999999999999999987 35589999999
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
+.+-
T Consensus 198 P~rl 201 (494)
T KOG1456|consen 198 PTRL 201 (494)
T ss_pred ccee
Confidence 8543
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.54 E-value=5.2e-07 Score=75.19 Aligned_cols=78 Identities=24% Similarity=0.433 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeCCC-cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCCC
Q 029152 64 NTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141 (198)
Q Consensus 64 ~~~lfV~~l~~~-~~e~~l~~~F~~~G~i~~v~i~~~k-g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~ 141 (198)
...|.|.||.+. +|.+.|..+|+-||.|.+|+|..+| .-|.|.|.|...|+-|++.|+|+.|.|++|+|.+++-+.-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 578899999876 9999999999999999999998864 67999999999999999999999999999999999865543
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.54 E-value=3.8e-07 Score=74.48 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=68.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~--------v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
.....+.|||.|||..+|.+++.++|++||-|.+ |+|-++ ||=|.|+|-..++++-|+..|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3455678999999999999999999999997743 344332 688999999999999999999999999
Q ss_pred CeEeEEEeccCCC
Q 029152 127 KQSVRLSWGRNPA 139 (198)
Q Consensus 127 g~~l~v~~a~~~~ 139 (198)
|+.|+|+.|+-+.
T Consensus 210 g~~~rVerAkfq~ 222 (382)
T KOG1548|consen 210 GKKLRVERAKFQM 222 (382)
T ss_pred CcEEEEehhhhhh
Confidence 9999999987543
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.34 E-value=2.2e-06 Score=73.00 Aligned_cols=74 Identities=24% Similarity=0.425 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
.+..-|-+.+|||++|+++|.++|+.++ |..+.+.+. .|-|||+|.+++++++|++ .+...+..+-|+|-.+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3455677889999999999999999984 677777653 5999999999999999998 588889999999987743
No 87
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.32 E-value=1.6e-06 Score=60.50 Aligned_cols=70 Identities=34% Similarity=0.548 Sum_probs=45.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCc-----eeCCeEeEEEe
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT-----VIGKQSVRLSW 134 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~-----~~~g~~l~v~~ 134 (198)
+.|.|.++...++.++|++.|++||.|..|.+.+.-.-|+|.|.+.+.|+.|++.+... .|.+..++++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46888899999999999999999999999999887789999999999999999877433 45565555553
No 88
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=7.5e-07 Score=69.29 Aligned_cols=74 Identities=26% Similarity=0.455 Sum_probs=65.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
...+.+.++|.+++..+.+.+|.++|.++|.+....+ .++++||+|...++|..|++.|++..+.++.|++...
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 3556788999999999999999999999999955444 5789999999999999999999999999999999544
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=5.4e-06 Score=56.76 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC--CceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeC----CeEeEE
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIG----KQSVRL 132 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~--G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~----g~~l~v 132 (198)
+||-|+|||-..+.++|.+++... |...-+-++. +.|||||.|.+.+.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988653 5555555544 3699999999999999999999999885 667889
Q ss_pred EeccCC
Q 029152 133 SWGRNP 138 (198)
Q Consensus 133 ~~a~~~ 138 (198)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 998754
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.29 E-value=3.6e-06 Score=55.51 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=48.5
Q ss_pred CeEEEcCCCCCCCHH----HHHHHhccCC-ceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 65 TTIFVGGLDPNVTDE----DLRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~----~l~~~F~~~G-~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
+.|+|.|||.+.+.. -|++++..+| +|.+| ..+.|+|.|.+.+.|++|.+.|++-.+-|.+|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 468999999998865 4566777775 77766 368999999999999999999999999999999999853
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.29 E-value=7.6e-07 Score=68.89 Aligned_cols=64 Identities=30% Similarity=0.579 Sum_probs=54.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
-..+|||.||..+++|++|+.+|+.|-....++|... -..||++|++.+.|..|+..|.|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 3469999999999999999999999976666666443 368999999999999999999887663
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.25 E-value=5.8e-06 Score=64.06 Aligned_cols=78 Identities=21% Similarity=0.407 Sum_probs=69.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeC-CeEeEEEecc
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGR 136 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~ 136 (198)
....+...||+.|||.+++.+.|..+|.+|...++|+++.. ++.|||+|.+...|..|...+.+..|. ...+.|.+++
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 34566789999999999999999999999999999998874 689999999999999999999998887 7788888875
No 93
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.15 E-value=2.5e-06 Score=67.19 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=66.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.+.+.+..+||-|-|.-+++.+.|-+.|.+|-.....++++ ++||+||.|.+..++..|+..|++..++.+.|+
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 34455678999999999999999999999986554455544 579999999999999999999999999999988
Q ss_pred EEecc
Q 029152 132 LSWGR 136 (198)
Q Consensus 132 v~~a~ 136 (198)
++...
T Consensus 264 lRkS~ 268 (290)
T KOG0226|consen 264 LRKSE 268 (290)
T ss_pred hhhhh
Confidence 76554
No 94
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.15 E-value=5.9e-06 Score=50.30 Aligned_cols=52 Identities=29% Similarity=0.640 Sum_probs=44.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHH
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~ 117 (198)
+.|-|.+.+.+..+ ++..+|..||+|.++.+.....+.+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 45778888887654 55668999999999999877899999999999999985
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.07 E-value=2.8e-05 Score=64.46 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeCCC-cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 59 EGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~-~~e~~l~~~F~~~G~i~~v~i~~~k-g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
....+.+.+-|-+|... ++-+.|..+|..||.|.+|+.++.| +-|.|++.|....++|+..||+..+-|.+|.|++++
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 34456788999999876 7889999999999999999999875 899999999999999999999999999999999987
Q ss_pred CCC
Q 029152 137 NPA 139 (198)
Q Consensus 137 ~~~ 139 (198)
...
T Consensus 362 Q~~ 364 (494)
T KOG1456|consen 362 QNF 364 (494)
T ss_pred ccc
Confidence 543
No 96
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=4.7e-06 Score=72.21 Aligned_cols=82 Identities=22% Similarity=0.471 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
.......++||++||..++++.++++...||.++...++. +++|||.+|.+......|+..|||..++++.|.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 3444567899999999999999999999999998887765 4899999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029152 133 SWGRNPAN 140 (198)
Q Consensus 133 ~~a~~~~~ 140 (198)
..|.....
T Consensus 364 q~A~~g~~ 371 (500)
T KOG0120|consen 364 QRAIVGAS 371 (500)
T ss_pred ehhhccch
Confidence 99876443
No 97
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=0.00016 Score=54.77 Aligned_cols=69 Identities=22% Similarity=0.413 Sum_probs=61.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
.++...+..+|.|.+||++-++++|+++..+-|.|+...+.++ +.+.|+|...|+.+-|+.+|+...+.
T Consensus 108 gppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 108 GPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred CCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 3555667789999999999999999999999999999999877 79999999999999999999887664
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.02 E-value=2.3e-05 Score=66.92 Aligned_cols=73 Identities=26% Similarity=0.431 Sum_probs=58.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEE-EEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~-v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.....|-+++||+.|++++|.++|+-.-.|.. |.++. ..+-|||.|++.+.|++|+.. |...|+.+-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35678899999999999999999997644333 33333 248899999999999999985 777889998888765
No 99
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.01 E-value=1.1e-05 Score=66.45 Aligned_cols=81 Identities=27% Similarity=0.332 Sum_probs=69.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEE--------EeC------CCcEEEEEeCCHHHHHHHHHHhCCce
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK--------IPV------GKGCGFVQFANRENAEEALHKLNGTV 124 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~--------i~~------~kg~afV~f~~~~~a~~a~~~l~~~~ 124 (198)
.......+|||-+|+..+++++|.++|.++|.|..-+ |-+ .|+-|.|+|.|...|+.|++.+++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 3456677999999999999999999999999875422 212 37999999999999999999999999
Q ss_pred eCCeEeEEEeccCCC
Q 029152 125 IGKQSVRLSWGRNPA 139 (198)
Q Consensus 125 ~~g~~l~v~~a~~~~ 139 (198)
+.+..|+|.+|..+.
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999997655
No 100
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.96 E-value=1.1e-05 Score=67.87 Aligned_cols=65 Identities=29% Similarity=0.406 Sum_probs=56.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-------------------CcEEEEEeCCHHHHHHHHHH
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------------------KGCGFVQFANRENAEEALHK 119 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-------------------kg~afV~f~~~~~a~~a~~~ 119 (198)
..+...++|.+-|||.+-.-+.|.++|+.+|.|+.|+|... +-||+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999999777999999999999999999652 57899999999999999997
Q ss_pred hCCc
Q 029152 120 LNGT 123 (198)
Q Consensus 120 l~~~ 123 (198)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7543
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.92 E-value=3e-05 Score=63.55 Aligned_cols=73 Identities=22% Similarity=0.588 Sum_probs=60.4
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHhccCCceEEEEEeCC-------Cc--EEEEEeCCHHHHHHHHHHhCCceeCCe
Q 029152 64 NTTIFVGGLDPNVTDED----L--RQPFSQYGEIASVKIPVG-------KG--CGFVQFANRENAEEALHKLNGTVIGKQ 128 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~----l--~~~F~~~G~i~~v~i~~~-------kg--~afV~f~~~~~a~~a~~~l~~~~~~g~ 128 (198)
..-+||-+|++.+..++ | .++|.+||+|..|.|.+. .+ -.||+|.+.|+|.++|...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999998865544 3 578999999999988662 12 249999999999999999999999999
Q ss_pred EeEEEecc
Q 029152 129 SVRLSWGR 136 (198)
Q Consensus 129 ~l~v~~a~ 136 (198)
.|+..+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998754
No 102
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.91 E-value=6.5e-05 Score=51.76 Aligned_cols=72 Identities=28% Similarity=0.377 Sum_probs=54.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEE-------------EeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-------------IPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ- 128 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~-------------i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~- 128 (198)
..+.|.|-+.|+. ....|.++|++||.|.+.. +.....+--|+|+++.+|.+||. -||..++|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4566889999998 4567888999999998875 44567899999999999999998 599999876
Q ss_pred EeEEEecc
Q 029152 129 SVRLSWGR 136 (198)
Q Consensus 129 ~l~v~~a~ 136 (198)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45577764
No 103
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.83 E-value=8.7e-06 Score=70.25 Aligned_cols=82 Identities=24% Similarity=0.352 Sum_probs=71.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
...+.+.+++|+--|...+++.+|.++|+.+|+|.+|.++.+ +|.+||+|.|.+++..||. |.|..+.|..|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeE
Confidence 445556789999999999999999999999999999999874 6999999999999999996 999999999999
Q ss_pred EEeccCCCC
Q 029152 132 LSWGRNPAN 140 (198)
Q Consensus 132 v~~a~~~~~ 140 (198)
|.......+
T Consensus 252 vq~sEaekn 260 (549)
T KOG0147|consen 252 VQLSEAEKN 260 (549)
T ss_pred ecccHHHHH
Confidence 988654443
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.74 E-value=3.8e-05 Score=62.81 Aligned_cols=76 Identities=36% Similarity=0.595 Sum_probs=66.3
Q ss_pred CCeEE-EcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 64 NTTIF-VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 64 ~~~lf-V~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..++| |++|+..+++++|+.+|..+|.|..+++... ++|++|+|.+...+..++.. ....+.++.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44555 9999999999999999999999999998763 69999999999999999886 7888999999999888
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
+...
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 6543
No 105
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.66 E-value=0.00019 Score=59.23 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=55.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G--~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
..+|||||-|.+|+++|.+.+...| .+.++++.. +||||+|...+..+.++.++.|...+|+|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4789999999999999988887665 444444433 5899999999999999999999999998875444
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.66 E-value=0.0002 Score=60.18 Aligned_cols=77 Identities=23% Similarity=0.428 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEE-EE-eCCCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EeEEEeccC
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KI-PVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGRN 137 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v-~i-~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~a~~ 137 (198)
-++..+|...|+|.+++|++|+.+|.+-|...+. +. .+++.++.+.+.+.|+|..|+-.++.+.++.. .|+|.|++.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 3556799999999999999999999988765444 33 44788999999999999999999999999755 899999875
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.00041 Score=60.40 Aligned_cols=58 Identities=31% Similarity=0.570 Sum_probs=49.7
Q ss_pred HHHHHhccCCceEEEEEeCC---------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 80 DLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 80 ~l~~~F~~~G~i~~v~i~~~---------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
+++.-+++||.|..|++.++ -|..||+|.+.+++++|.+.|+|..+.++.|...+-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34445678999999999875 38899999999999999999999999999998887643
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00046 Score=59.49 Aligned_cols=58 Identities=28% Similarity=0.550 Sum_probs=47.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC---------CCc---EEEEEeCCHHHHHHHHHH
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKG---CGFVQFANRENAEEALHK 119 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~---------~kg---~afV~f~~~~~a~~a~~~ 119 (198)
..-.++||||+||+.++|+.|...|..||.+. |++.. .+| |+|+.|+++.++...+..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 34468999999999999999999999999853 44442 256 999999999888877654
No 109
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.41 E-value=7.8e-05 Score=58.92 Aligned_cols=67 Identities=28% Similarity=0.493 Sum_probs=58.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----------------C--cEEEEEeCCHHHHHHHHHHhCCce
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----------------K--GCGFVQFANRENAEEALHKLNGTV 124 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----------------k--g~afV~f~~~~~a~~a~~~l~~~~ 124 (198)
..-.||+++||+.++...|+++|+.||+|-+|.+-+. . .-+.|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988651 1 226799999999999999999999
Q ss_pred eCCeE
Q 029152 125 IGKQS 129 (198)
Q Consensus 125 ~~g~~ 129 (198)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98874
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.30 E-value=0.00099 Score=55.68 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCC-ceEE--EEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIAS--VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G-~i~~--v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
......|.+++||++.+.++|.++|..|. .|.. |++..+ .|-|||+|.+.|.|..|..+-+.+....+.|+|
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 33456789999999999999999999985 3433 555442 589999999999999999888877777888888
Q ss_pred Eecc
Q 029152 133 SWGR 136 (198)
Q Consensus 133 ~~a~ 136 (198)
-.+.
T Consensus 357 fp~S 360 (508)
T KOG1365|consen 357 FPCS 360 (508)
T ss_pred eecc
Confidence 7654
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0013 Score=57.55 Aligned_cols=73 Identities=25% Similarity=0.418 Sum_probs=58.8
Q ss_pred CCCCeEEEcCCCCCCC------HHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeC-CeE
Q 029152 62 SSNTTIFVGGLDPNVT------DEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG-KQS 129 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~------e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~-g~~ 129 (198)
.-...|+|.|+|.--. ...|..+|+++|+|....++.+ +||.|++|.+..+|+.|++.|||+.|+ .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4457889999986432 2345678999999999888753 799999999999999999999999987 556
Q ss_pred eEEEe
Q 029152 130 VRLSW 134 (198)
Q Consensus 130 l~v~~ 134 (198)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66664
No 112
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.26 E-value=0.00029 Score=61.69 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=67.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcc-CCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCcee---CCeEeEE
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI---GKQSVRL 132 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~-~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~---~g~~l~v 132 (198)
.+.....+..|+|.||-.-.|.-.|+.++.+ .|.|.+.-|-+-|..|||.|.+.++|.+.+..||+..| +.+.|.+
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 3445666789999999999999999999985 66777764434478999999999999999999999987 6889999
Q ss_pred EeccC
Q 029152 133 SWGRN 137 (198)
Q Consensus 133 ~~a~~ 137 (198)
.|+..
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 99864
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.24 E-value=0.00069 Score=61.93 Aligned_cols=81 Identities=22% Similarity=0.475 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeC--CeEeEEEeccC
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWGRN 137 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~a~~ 137 (198)
.....+.+||++|..++....|...|..||.|..|.+-....|++|.|++.+.++.|++.|-+..|+ .+.|.|.+|.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 5556789999999999999999999999999999999877789999999999999999999999997 56799999986
Q ss_pred CCC
Q 029152 138 PAN 140 (198)
Q Consensus 138 ~~~ 140 (198)
...
T Consensus 531 ~~~ 533 (975)
T KOG0112|consen 531 PGA 533 (975)
T ss_pred CCC
Confidence 543
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.23 E-value=0.0015 Score=53.92 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=63.2
Q ss_pred CCCCCCCCeEEEcCCCC----CCC-------HHHHHHHhccCCceEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCce
Q 029152 58 SEGDSSNTTIFVGGLDP----NVT-------DEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTV 124 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~----~~~-------e~~l~~~F~~~G~i~~v~i~--~~kg~afV~f~~~~~a~~a~~~l~~~~ 124 (198)
.......++|.+.|+=. ..+ +++|.+-..+||.|.+|.|. ...|.+-|.|.+.+.|..||+.|+|..
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 34455678888888732 223 24555667889999999887 457999999999999999999999999
Q ss_pred eCCeEeEEEeccC
Q 029152 125 IGKQSVRLSWGRN 137 (198)
Q Consensus 125 ~~g~~l~v~~a~~ 137 (198)
++|+.|..++-..
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999998876543
No 115
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.16 E-value=0.00029 Score=59.49 Aligned_cols=77 Identities=22% Similarity=0.378 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCc-eeCCeEeEEEeccCCCCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT-VIGKQSVRLSWGRNPANK 141 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~-~~~g~~l~v~~a~~~~~~ 141 (198)
.++|++||.+..+.++|+.+|...-.-..-.++...+|+||.+.+...|.+|++.+++. ++.|+++.|+..-++..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 46999999999999999999975411111223334699999999999999999999886 588999999988765443
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.15 E-value=0.0024 Score=46.76 Aligned_cols=55 Identities=27% Similarity=0.473 Sum_probs=45.6
Q ss_pred HHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 80 DLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 80 ~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
+|.+.|..||++.-|++.- +.-.|+|.+-++|-+|+. +++..+.|+.|+|++..+
T Consensus 52 ~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 6677888999998888774 578999999999999998 899999999999998654
No 117
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.12 E-value=0.0032 Score=39.36 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=45.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC---CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHh
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQY---GEIASVKIPVGKGCGFVQFANRENAEEALHKL 120 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~---G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l 120 (198)
...+|+|.|+. +++.++|+.+|..| ....+|+++.+ .-|-|.|.+.+.|.+||..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 34679999984 57788999999988 24567888877 46788899999999999764
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.94 E-value=0.0026 Score=56.89 Aligned_cols=69 Identities=28% Similarity=0.348 Sum_probs=58.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCce-EEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i-~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.|-+.|+|++++-+||.++|..|-.+ -+|.+-+ ..|-|.|.|++.++|.+|...|++..|..+.|.+.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 67889999999999999999999544 2333332 248999999999999999999999999999988764
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0056 Score=53.02 Aligned_cols=62 Identities=31% Similarity=0.477 Sum_probs=53.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhc-cCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHH
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 119 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~-~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~ 119 (198)
...-.+.+|||||+||.-++.++|-.+|+ -||.|+.+-|-.| +|-|=|+|.+-.+-.+||+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 33445678999999999999999999998 6999999887664 69999999999999999873
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.80 E-value=0.00062 Score=53.95 Aligned_cols=56 Identities=27% Similarity=0.440 Sum_probs=46.7
Q ss_pred HHHHHhc-cCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 80 DLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 80 ~l~~~F~-~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
+|...|+ +||+|+++.|-.+ +|=++|.|...++|++|++.||+-.+.|++|..++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3344444 8999999877553 578999999999999999999999999999988874
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.62 E-value=0.0063 Score=49.30 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=48.9
Q ss_pred HHHHHHHhccCCceEEEEEeCC------C-cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 78 DEDLRQPFSQYGEIASVKIPVG------K-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 78 e~~l~~~F~~~G~i~~v~i~~~------k-g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
|+++++-.++||.|..|.|... . ---||+|+..++|.+|+-.|||..++|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3567778889999998876542 2 457999999999999999999999999998877753
No 122
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.56 E-value=0.0091 Score=45.78 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=49.3
Q ss_pred CHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEeEEEeccCC
Q 029152 77 TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 77 ~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~a~~~ 138 (198)
..+.|+++|..++.+..+...++-+-..|.|.+.+.|.+|...|+ +..+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999999999888899999999999999999999 89999999999999543
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.56 E-value=0.023 Score=37.58 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=42.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 121 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~ 121 (198)
..+.++|. +|.++-..||.++|+.||.|. |.++.+ .-|||...+++.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-CcEEEEeecHHHHHHHHHHhc
Confidence 35566666 999999999999999999874 555544 689999999999999988775
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.55 E-value=0.0033 Score=52.75 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=57.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
..|-|.||.++++.++++.+|.-.|+|.++.|..+ ...|||-|.|...+..|-. |..+.+-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 37899999999999999999999999999998762 4789999999999888866 6666655555555443
No 125
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.23 E-value=0.0036 Score=53.67 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=64.0
Q ss_pred CCCCCCCCeEEEcCCCCCC-CHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 58 SEGDSSNTTIFVGGLDPNV-TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~-~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
.....+.+.|-+.-.+... +.++|..+|.+||+|..|.+-.+---|.|+|.+..+|-.|.. .++..|+++.|+|.|-.
T Consensus 366 g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 366 GHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3444555666666666664 568999999999999999997766789999999999966655 68999999999999987
Q ss_pred C
Q 029152 137 N 137 (198)
Q Consensus 137 ~ 137 (198)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 6
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.19 E-value=0.0014 Score=60.04 Aligned_cols=80 Identities=25% Similarity=0.505 Sum_probs=66.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
..++...+.+||++||...+++.+|+..|..+|.|.+|.|-.. ..|+||.|.+.+.+-.|+..+.+..|..-.++
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3455566789999999999999999999999999999988653 37999999999999999988888887655666
Q ss_pred EEecc
Q 029152 132 LSWGR 136 (198)
Q Consensus 132 v~~a~ 136 (198)
+.+..
T Consensus 445 ~glG~ 449 (975)
T KOG0112|consen 445 IGLGQ 449 (975)
T ss_pred ccccc
Confidence 66653
No 127
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=0.046 Score=44.60 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=57.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeE-eEEEeccCCC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS-VRLSWGRNPA 139 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~-l~v~~a~~~~ 139 (198)
+.=|-|-++++.-. ..|..+|++||+|++......-.|-.|.|.++-+|++||. .++.+|++.. |-|+....+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 44455667777633 5677899999999888777666899999999999999998 4999998764 4566655443
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.03 E-value=0.0066 Score=54.45 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEE-EEEeC---C--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV---G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~-v~i~~---~--kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.....|||..||..+++.++.++|..--.|++ |.|.+ + ++.|||+|..++++.+|+..-+.+.++.+.|+|.-.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 34578999999999999999999998766666 66644 2 589999999988888888777788888999988753
No 129
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.01 E-value=0.03 Score=49.18 Aligned_cols=71 Identities=10% Similarity=0.182 Sum_probs=55.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc--CCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEeEEE
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQ--YGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLS 133 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~--~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~ 133 (198)
...+.|.++.||..+.+++++.+|.. +-++.+|+...+.+ =||+|++..+|+.|.+.|. -.+|.|+.|..+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 34567788999999999999999964 77888888766543 3999999999999998773 346778766443
No 130
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.74 E-value=0.0082 Score=53.45 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=65.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
+......+..++||+|+...+..+-++.+...+|-|..++... |+|.+|.+......|+..++...+++..|.+..
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4455566678999999999999999999999999998876653 999999999999999999998899888776655
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.68 E-value=0.0037 Score=51.42 Aligned_cols=74 Identities=20% Similarity=0.431 Sum_probs=58.2
Q ss_pred CCeEEEcCCCCCCC-HHHHH--HHhccCCceEEEEEeCCC---------cEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 64 NTTIFVGGLDPNVT-DEDLR--QPFSQYGEIASVKIPVGK---------GCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 64 ~~~lfV~~l~~~~~-e~~l~--~~F~~~G~i~~v~i~~~k---------g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
..-+||-+|+.... |..|+ +.|.+||.|..|.+.++. .-++|+|...++|..||...++..++++.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 45678889988754 44443 579999999999886632 2379999999999999999999999998877
Q ss_pred EEeccC
Q 029152 132 LSWGRN 137 (198)
Q Consensus 132 v~~a~~ 137 (198)
..+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 776544
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.66 E-value=0.079 Score=38.72 Aligned_cols=78 Identities=27% Similarity=0.397 Sum_probs=58.7
Q ss_pred CCCCCCCCeEEEcCCCCCCC-HHHHH---HHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 58 SEGDSSNTTIFVGGLDPNVT-DEDLR---QPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~-e~~l~---~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
...+.+-.+|.|+=|..++. .+||+ ..++.||+|.+|.+. .+.-|.|.|.|..+|=+|+..++. ..-|..+.+.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 34466678898987766643 34444 456789999998775 467899999999999999988765 5667788888
Q ss_pred eccC
Q 029152 134 WGRN 137 (198)
Q Consensus 134 ~a~~ 137 (198)
|-..
T Consensus 158 Wqqr 161 (166)
T PF15023_consen 158 WQQR 161 (166)
T ss_pred cccc
Confidence 8654
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.65 E-value=0.0055 Score=55.94 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
...|||.|+|+..|.++|+.++.++|.++++.++. .+|.++|.|.++.++.+++...+...+..+.+.|..+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 46899999999999999999999999999987765 3699999999999999999888888787777777776553
No 134
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.57 E-value=0.032 Score=42.48 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=50.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-CCce---EEEE--EeC------CCcEEEEEeCCHHHHHHHHHHhCCceeC---
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEI---ASVK--IPV------GKGCGFVQFANRENAEEALHKLNGTVIG--- 126 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~-~G~i---~~v~--i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~--- 126 (198)
....+|.|++||+++||+++.+.++. ++.. ..+. ... .-.-|+|.|.+.+++..-...++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999987776 5554 3333 111 1267999999999999999999998763
Q ss_pred C--eEeEEEeccC
Q 029152 127 K--QSVRLSWGRN 137 (198)
Q Consensus 127 g--~~l~v~~a~~ 137 (198)
| ..-.|++|--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 2456777754
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.38 E-value=0.025 Score=36.69 Aligned_cols=67 Identities=27% Similarity=0.442 Sum_probs=40.0
Q ss_pred eEEEc-CCCCCCCHHHHHHHhccCC-----ceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 66 TIFVG-GLDPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 66 ~lfV~-~l~~~~~e~~l~~~F~~~G-----~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
++||. +--..++..+|..++..-+ .|-.|+|. ..|+||+-.. +.|+.+++.|++..+.|+.|+|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45553 2234578888988887653 45666665 4699999975 5889999999999999999999875
No 136
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.92 E-value=0.22 Score=42.05 Aligned_cols=65 Identities=29% Similarity=0.363 Sum_probs=46.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC----CceEEEE-EeC----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQY----GEIASVK-IPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~----G~i~~v~-i~~----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
-.|..++||+++++.++.++|..- |..+.|- +.+ ..|-|||.|..+++|+.||.+ |...|+.+.|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 356778999999999999999631 2333333 332 248999999999999999975 4444444443
No 137
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.78 E-value=0.018 Score=52.78 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=62.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeC--CeEeEEEeccCC
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWGRNP 138 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~a~~~ 138 (198)
+.++.|..-..+...|..+|++||.|.+....++-..|.|+|.+.+.|..|++.|+|.++. |-..+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555667788899999999999999999998899999999999999999999999864 778999999864
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.73 E-value=0.44 Score=33.39 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=46.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC-CceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~-G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
..+.+...|..++.++|..+.+.+ ..|..++|+++ +--+.+.|.+.+.|..-...+||..++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 334444555556667776666665 46788899885 456999999999999999999999876
No 139
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.26 E-value=0.051 Score=43.32 Aligned_cols=57 Identities=26% Similarity=0.446 Sum_probs=49.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLN 121 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~ 121 (198)
..|+|.||+.-++.+.|+..|+.||.|....++.+ .+-++|+|...-.|.+|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999987665543 3778999999999999998763
No 140
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.15 E-value=0.002 Score=58.70 Aligned_cols=63 Identities=33% Similarity=0.515 Sum_probs=51.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEe--C----CCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--V----GKGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~--~----~kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
..++||.||+..+.+.+|...|..+|.+..+++. . -||.|+++|...+++.+|+.......++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4688999999999999999999999877766553 1 2699999999999999999865554443
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.60 E-value=1.6 Score=27.59 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=43.0
Q ss_pred CCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 75 NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 75 ~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
.++-++|+..+.+|+- .+| ..++.-=||.|.+..+|+++....++..+...+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999963 333 335545589999999999999999998887777654
No 142
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=1.3 Score=39.50 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccC----CceEEEEEeCC------------------------------------
Q 029152 61 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPVG------------------------------------ 99 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~-~~e~~l~~~F~~~----G~i~~v~i~~~------------------------------------ 99 (198)
...+++|-|-|+.|. +...+|..+|+.| |.|.+|.|-.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 8889999999887 69999998431
Q ss_pred ----------------C-cEEEEEeCCHHHHHHHHHHhCCceeCCe--EeEEEec
Q 029152 100 ----------------K-GCGFVQFANRENAEEALHKLNGTVIGKQ--SVRLSWG 135 (198)
Q Consensus 100 ----------------k-g~afV~f~~~~~a~~a~~~l~~~~~~g~--~l~v~~a 135 (198)
+ -||.|+|.+.+.|....+.-+|.++... .|.++|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 5799999999999999999999999744 5555553
No 143
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=89.06 E-value=0.36 Score=36.68 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=58.7
Q ss_pred CCeEEEcCCCCCCC-----HHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EeEEEeccC
Q 029152 64 NTTIFVGGLDPNVT-----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGRN 137 (198)
Q Consensus 64 ~~~lfV~~l~~~~~-----e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~a~~ 137 (198)
.+++.+.++...+- ....+.+|.+|-+....+++++.++.-|.|.+++.|..|...++...+.|+ .++.-++.+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 34567777776532 234566777777777777888888899999999999999999999999988 888888875
Q ss_pred C
Q 029152 138 P 138 (198)
Q Consensus 138 ~ 138 (198)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 4
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.18 E-value=1.1 Score=39.65 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=33.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCceeC----CeEeEEEeccCCCC
Q 029152 100 KGCGFVQFANRENAEEALHKLNGTVIG----KQSVRLSWGRNPAN 140 (198)
Q Consensus 100 kg~afV~f~~~~~a~~a~~~l~~~~~~----g~~l~v~~a~~~~~ 140 (198)
.|||||.|.+.+++..+.+..||+.+. .+...+.||+-+..
T Consensus 431 vGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 431 VGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred cceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 499999999999999999999998763 55667888875543
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.01 E-value=1.6 Score=37.79 Aligned_cols=63 Identities=16% Similarity=0.325 Sum_probs=55.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccC-CceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~-G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
.+.|+|-.+|-.++-.||-.|...+ -.|.+++|+++ +-...|.|.+.++|..-.+.+||..++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7889999999999999999988875 57889999885 455899999999999999999999875
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.48 E-value=0.45 Score=39.08 Aligned_cols=75 Identities=23% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
...+++|++++.+.+.+.++..++...|.+....+.. +++++.+.|...+.+..++.......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3578999999999999998889999998766655533 4799999999999999999854444566666555544
Q ss_pred c
Q 029152 136 R 136 (198)
Q Consensus 136 ~ 136 (198)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 4
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.22 E-value=3.6 Score=33.67 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=39.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCce-EEEEEeCCCcEEEEEeCCHH
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPVGKGCGFVQFANRE 111 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i-~~v~i~~~kg~afV~f~~~~ 111 (198)
.+-|+++||+.++.-.+|+..+.+-+.+ .++.+.-.++-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 3459999999999999999999887754 56666666789999998753
No 148
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.88 E-value=9.6 Score=34.96 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=50.6
Q ss_pred CeEEEc-CCCCCCCHHHHHHHhccCCceE-----EEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 65 TTIFVG-GLDPNVTDEDLRQPFSQYGEIA-----SVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 65 ~~lfV~-~l~~~~~e~~l~~~F~~~G~i~-----~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
.++||. +-...++..+|..++..-+.|. .|+|. ..|.||+.. .+.|...++.|+...+.|+.|.|+.++
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 446553 3344578888888887655443 34443 469999997 467888999999999999999999875
No 149
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.98 E-value=4.5 Score=33.17 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=60.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCC-------------cEEEEEeCCHHHHHHH----HHHh
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-------------GCGFVQFANRENAEEA----LHKL 120 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~k-------------g~afV~f~~~~~a~~a----~~~l 120 (198)
.++.-.++.|.+.|+..+++--.+...|.+||.|++|.++.+. ....+.|-+++.+..- ++.|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 4455567889999999999988899999999999999998754 6788999998876553 3334
Q ss_pred CC--ceeCCeEeEEEecc
Q 029152 121 NG--TVIGKQSVRLSWGR 136 (198)
Q Consensus 121 ~~--~~~~g~~l~v~~a~ 136 (198)
.. ..+....|.+.|..
T Consensus 89 sEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHhcCCcceeEEEEE
Confidence 32 24667778877765
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.08 E-value=0.15 Score=43.63 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-C--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-~--kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
....+++-|.|+|+...++.|..++..||.+..+.... + ....-|+|...+.++.||.+|++..+....++|.+--.
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 34567799999999999999999999999998886543 2 24455788999999999999999999999988887543
No 151
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=75.17 E-value=6.6 Score=36.63 Aligned_cols=8 Identities=38% Similarity=0.642 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 029152 110 RENAEEAL 117 (198)
Q Consensus 110 ~~~a~~a~ 117 (198)
.+.+++-+
T Consensus 490 ~qe~qael 497 (1102)
T KOG1924|consen 490 RQEAQAEL 497 (1102)
T ss_pred HHHHHHHH
Confidence 33333333
No 152
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=70.59 E-value=26 Score=30.30 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhccC----CceEEEEEe
Q 029152 59 EGDSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIP 97 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~-~~e~~l~~~F~~~----G~i~~v~i~ 97 (198)
.....+.+|-|-|+.|. +...+|..+|+.| |.|..|.|.
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 33455678999999997 7888999999876 688888873
No 153
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.04 E-value=12 Score=32.10 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeCCCcEEEEEeCCHHHHHHHHH
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANRENAEEALH 118 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~-i~~v~i~~~kg~afV~f~~~~~a~~a~~ 118 (198)
-.+.|-|.++|...-.+||...|+.|+. -.+|+++-+ -.+|-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-ceeEEeecchHHHHHHhh
Confidence 4578999999999888889999999963 456666644 689999999999999986
No 154
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=64.02 E-value=29 Score=20.78 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=41.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCH----HHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANR----ENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~----~~a~~a~~~ 119 (198)
++.|.|+.=.-....|++.+.+.-.|.++.+....+-+-|+|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 466777766666788999999988899999988888999999854 445555553
No 155
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.39 E-value=18 Score=22.57 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=15.1
Q ss_pred HHHHHHhccCCceEEEEE
Q 029152 79 EDLRQPFSQYGEIASVKI 96 (198)
Q Consensus 79 ~~l~~~F~~~G~i~~v~i 96 (198)
.+|+++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999876655
No 156
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=61.08 E-value=25 Score=23.31 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-ceEEEEEeC---CCcEEEEEeCCHHHHHHHHHH
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALHK 119 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~-~G-~i~~v~i~~---~kg~afV~f~~~~~a~~a~~~ 119 (198)
-|+--++...+..+|++.+++ |+ .|.+|.... +.--|||++...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 444456778899999999987 66 677776543 234599999988888877554
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=60.99 E-value=1.1 Score=38.17 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
++++|.+|...+...++-+.|..+|+|...++.. ..-+|.|+|...-+...|+. +++.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6799999999999999999999999998877643 34677899988777777776 4555554
No 158
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=59.25 E-value=14 Score=30.60 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 103 afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
|||+|++..+|+.|++.+.... ...++++.|-++.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655443 34557777765544
No 159
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=57.66 E-value=34 Score=22.26 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=39.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc-CC-ceEEEEEeC---CCcEEEEEeCCHHHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~-~G-~i~~v~i~~---~kg~afV~f~~~~~a~~a~~~ 119 (198)
.-|+-.++...+..+|++.++. |+ .|.+|.... +.--|||++..-+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 3556667888999999999887 66 677775543 224599999988887776543
No 160
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=56.17 E-value=7.9 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=21.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhc
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFS 86 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~ 86 (198)
..+.++|.|.|||..++|++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34578899999999999999997654
No 161
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=54.49 E-value=53 Score=20.79 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=32.7
Q ss_pred HHHHHHhccCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhC
Q 029152 79 EDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLN 121 (198)
Q Consensus 79 ~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~a~~a~~~l~ 121 (198)
.++.+.+.++| +.-..+.-. -++.|+-+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45667777888 666677766 7899999989999998887663
No 162
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=51.26 E-value=38 Score=22.18 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=25.1
Q ss_pred ceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCcee
Q 029152 90 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVI 125 (198)
Q Consensus 90 ~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~ 125 (198)
.|.++....+ +||-|||=.+..++..|++.+.+...
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 4566655543 89999999999999999988766543
No 163
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=50.25 E-value=3.3 Score=36.81 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=52.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
..++||+.|+.++++-.+|+.+...+--+.++.+... ..+..|+|..--....|+..||++.+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 4578999999999999999999998866666655332 3667888987777777888888877765543
No 164
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=49.29 E-value=32 Score=21.76 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=38.2
Q ss_pred HHHHHHhccCC-ceEEEEEeCCC------cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 79 EDLRQPFSQYG-EIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 79 ~~l~~~F~~~G-~i~~v~i~~~k------g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
++|++.|...| +|..|.-+.++ ..-||+.+...+ ..+.++-..|.+..|+|+..+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCC
Confidence 46777887777 77777665542 567787775444 22335566788999999877643
No 165
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=44.12 E-value=80 Score=19.83 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=36.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 109 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~ 109 (198)
.++.|.++.=.--...+++.+.....|.++++-..++-++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 356666665555567888999888889999998888899999998
No 166
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.03 E-value=3.8 Score=35.47 Aligned_cols=72 Identities=7% Similarity=-0.058 Sum_probs=56.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
.+.|+..++..++++++.-+|.-||.|..+.+.+ .+-.+||+-.. ..+..+|..+....+.+..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3456778888999999999999999998887754 14567887764 566778777777778888888887754
No 167
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.23 E-value=1.2e+02 Score=22.41 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=36.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcc---CCceEEEEEeC------------C---Cc-EEEEEeCCHH
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQ---YGEIASVKIPV------------G---KG-CGFVQFANRE 111 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~---~G~i~~v~i~~------------~---kg-~afV~f~~~~ 111 (198)
..+|++..++..++|++-++..++ -+++++|.+.+ + +. |-+|.|++-.
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 378999999999999999998875 46778887755 1 33 7778887643
No 168
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=38.55 E-value=86 Score=23.10 Aligned_cols=50 Identities=12% Similarity=0.315 Sum_probs=33.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-ceEEEEEeC-CCc--EEEEEeCCHHHHHHH
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV-GKG--CGFVQFANRENAEEA 116 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~-~G-~i~~v~i~~-~kg--~afV~f~~~~~a~~a 116 (198)
-|+--++...+..+|++.+++ |+ .|..|..+. ..+ -|||.+....+|...
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 445456778888899988886 65 667765433 333 599999766665443
No 169
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=38.46 E-value=21 Score=19.62 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhccCCc
Q 029152 74 PNVTDEDLRQPFSQYGE 90 (198)
Q Consensus 74 ~~~~e~~l~~~F~~~G~ 90 (198)
..+++++|++.|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999987643
No 170
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.46 E-value=57 Score=27.86 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=45.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeC-C-------CcEEEEEeCCHHHHHHHHHHhCCcee
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPV-G-------KGCGFVQFANRENAEEALHKLNGTVI 125 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~-i~~v~i~~-~-------kg~afV~f~~~~~a~~a~~~l~~~~~ 125 (198)
..+|.|.+||+..++.+|.+-...+-. +......+ + .+.++|.|...++...-.+..+|+++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 457889999999999988877766532 22222221 1 37899999999998887787888875
No 171
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=36.44 E-value=80 Score=22.65 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=28.9
Q ss_pred CCceEEEEEeCCCcE-EEEEeCC--------HHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 88 YGEIASVKIPVGKGC-GFVQFAN--------RENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 88 ~G~i~~v~i~~~kg~-afV~f~~--------~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.|.+..-+|..-..| |||+++. -+-|..-++.+|.+.--|..+.|+.
T Consensus 5 vG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKV 60 (129)
T COG1098 5 VGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKV 60 (129)
T ss_pred ccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEE
Confidence 466666666543445 7888887 3556666666666554555555543
No 172
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=35.18 E-value=9.3 Score=30.19 Aligned_cols=65 Identities=35% Similarity=0.505 Sum_probs=50.7
Q ss_pred CCCCCeEEEcC----CCCCCCHHHHHHHhccCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCcee
Q 029152 61 DSSNTTIFVGG----LDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVI 125 (198)
Q Consensus 61 ~~~~~~lfV~~----l~~~~~e~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~ 125 (198)
.....+++-|+ |...++++.+.+.|+.-|.+..+++.. ++.+.|+++......-.++....+..+
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 33456677787 788899999999999999998888765 368999999888877778776555443
No 173
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=33.95 E-value=90 Score=21.94 Aligned_cols=41 Identities=22% Similarity=0.457 Sum_probs=22.9
Q ss_pred CHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCC-HHHHHHHHH
Q 029152 77 TDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFAN-RENAEEALH 118 (198)
Q Consensus 77 ~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~-~~~a~~a~~ 118 (198)
+.++|++.|+.|..++ ++...+ .+++.|+|.. -..-..|++
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999997764 333332 4899999984 444455554
No 174
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=33.50 E-value=58 Score=20.75 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHhccCC-ceEEEEEeCCC------cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 79 EDLRQPFSQYG-EIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 79 ~~l~~~F~~~G-~i~~v~i~~~k------g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
++|++.|.+.| +++.+.-+..+ ..-||+.....+... .|+-..|.+.++.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888888888 78888776642 455677664322222 355567788898888654
No 175
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.66 E-value=36 Score=27.19 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=29.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK 95 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~ 95 (198)
......+||+-|+|..++++.|.++.++.|-+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 334466899999999999999999999988655443
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=30.90 E-value=32 Score=27.93 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=24.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEE
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 96 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i 96 (198)
.....|+|||++++..-|..++...-.+....+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 345679999999999999999886544433333
No 177
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=30.58 E-value=76 Score=24.25 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=34.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG 99 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~ 99 (198)
.........+++.+++..++..++...|..+|.+....+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 344455678999999999999999999999999977777553
No 178
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.83 E-value=1.1e+02 Score=20.35 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=28.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC--CceEEEEE-eCCCcEEEEEeC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKI-PVGKGCGFVQFA 108 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~--G~i~~v~i-~~~kg~afV~f~ 108 (198)
.-|||++++..+.|.-.+.+.+.. |.+.-+.- ....||.|-+.-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 349999999999887777776654 33322211 123588888773
No 179
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.79 E-value=59 Score=26.74 Aligned_cols=34 Identities=35% Similarity=0.741 Sum_probs=26.4
Q ss_pred CeEEEcCCCCC------------CCHHHHHHHhccCCceEEEEEeC
Q 029152 65 TTIFVGGLDPN------------VTDEDLRQPFSQYGEIASVKIPV 98 (198)
Q Consensus 65 ~~lfV~~l~~~------------~~e~~l~~~F~~~G~i~~v~i~~ 98 (198)
.+|++.+||-. -+|+.|+..|..||+|..|.|+.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 46777776642 36789999999999999998854
No 180
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.43 E-value=1e+02 Score=19.36 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 101 GCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 101 g~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
.+.+|+|.+...|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46789999999999988877655443
No 181
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.34 E-value=1.6e+02 Score=26.21 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=43.3
Q ss_pred EEcCCCCCCC---HHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 68 FVGGLDPNVT---DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 68 fV~~l~~~~~---e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
+||||..-.. ...+.++=.+||.|-.+++.. .-.|...+.+.|+.++.. ++..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 5777765433 345566666899999988842 347888899999999984 7778877764
No 182
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=23.19 E-value=2.7e+02 Score=20.38 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=25.9
Q ss_pred eEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCc
Q 029152 91 IASVKIPVG-KGCGFVQFANRENAEEALHKLNGT 123 (198)
Q Consensus 91 i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~ 123 (198)
|.++.++.. .||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 666666543 699999999888889999877654
No 183
>PF14893 PNMA: PNMA
Probab=22.90 E-value=59 Score=27.41 Aligned_cols=47 Identities=11% Similarity=0.339 Sum_probs=31.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcc-CCceEEEEEeC-------CCcEEEEEeCC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV-------GKGCGFVQFAN 109 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~-~G~i~~v~i~~-------~kg~afV~f~~ 109 (198)
..+.|.|.+||.++++++|++.+.. .-.+-..+|.. ...-++|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 3567999999999999999988754 32222233321 12568888874
No 184
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=21.91 E-value=44 Score=28.72 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.2
Q ss_pred chhhhc-------chhhhhhhhhhhhc
Q 029152 5 RHCCER-------KGEREERTLLYKLC 24 (198)
Q Consensus 5 ~~~c~~-------~~~~~~~~~~~~~c 24 (198)
..||+| |++|+.+.++-+|-
T Consensus 244 TTIcRFEALqLSFKNMCKLKPLL~KWL 270 (398)
T KOG3802|consen 244 TTICRFEALQLSFKNMCKLKPLLEKWL 270 (398)
T ss_pred hhhhHhHhhccCHHHHhhhHHHHHHHH
Confidence 579988 89999988887664
No 185
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.53 E-value=2.5e+02 Score=18.55 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=31.0
Q ss_pred HHHHHHHhccCC-ceEEEEEeCCC--cEEEEEeCCHHHHHHHHHHh
Q 029152 78 DEDLRQPFSQYG-EIASVKIPVGK--GCGFVQFANRENAEEALHKL 120 (198)
Q Consensus 78 e~~l~~~F~~~G-~i~~v~i~~~k--g~afV~f~~~~~a~~a~~~l 120 (198)
.+.+++++++.| +++++.+.... -...+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 456777888775 88888777643 45788999988888765433
No 186
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.22 E-value=1.4e+02 Score=18.78 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHHHhccCC-ceEEEEEeCCCcEEEEEeCC
Q 029152 79 EDLRQPFSQYG-EIASVKIPVGKGCGFVQFAN 109 (198)
Q Consensus 79 ~~l~~~F~~~G-~i~~v~i~~~kg~afV~f~~ 109 (198)
.+|-++.-.|| .|.+-.+..+-.+|||.|.-
T Consensus 15 cdlcr~il~fGl~i~rgd~sTDGkWCyiv~wV 46 (69)
T cd04894 15 CDLCRIILEFGLNITRGDDSTDGRWCYIVFWV 46 (69)
T ss_pred cHHHHHHHHhceEEEecccccCCcEEEEEEEE
Confidence 45666666688 56777777777899999863
No 187
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.10 E-value=52 Score=21.35 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCce
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEI 91 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i 91 (198)
..++--+.||=.+++...|+.+|.+-|..
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34556678888999999999999999864
No 188
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=20.54 E-value=72 Score=19.91 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=14.5
Q ss_pred CceEEEEEeCCCcEEEEEeCCHH
Q 029152 89 GEIASVKIPVGKGCGFVQFANRE 111 (198)
Q Consensus 89 G~i~~v~i~~~kg~afV~f~~~~ 111 (198)
|.|.+++. ..+|++|++..|..
T Consensus 6 g~v~~i~~-tk~g~~~~~L~D~~ 27 (78)
T cd04489 6 GEISNLKR-PSSGHLYFTLKDED 27 (78)
T ss_pred EEEecCEE-CCCcEEEEEEEeCC
Confidence 55666666 45578887776654
Done!