Query 029152
Match_columns 198
No_of_seqs 226 out of 2153
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4c_A Splicing factor, argini 99.9 1.4E-21 4.7E-26 136.5 14.8 82 59-141 10-96 (108)
2 3u1l_A PRE-mRNA-splicing facto 99.9 5.7E-23 2E-27 162.1 7.6 134 3-140 68-231 (240)
3 2cq1_A PTB-like protein L; RRM 99.9 2.4E-21 8.1E-26 133.9 14.6 84 58-141 9-94 (101)
4 2cq3_A RNA-binding protein 9; 99.9 3.7E-21 1.3E-25 133.0 15.1 87 56-142 7-97 (103)
5 2cpj_A Non-POU domain-containi 99.9 1.7E-21 5.9E-26 133.8 12.5 84 57-140 8-91 (99)
6 1x4d_A Matrin 3; structural ge 99.9 1E-21 3.4E-26 135.9 11.2 79 61-139 12-93 (102)
7 1sjq_A Polypyrimidine tract-bi 99.9 6.6E-22 2.3E-26 137.1 10.2 82 61-142 13-96 (105)
8 2dgu_A Heterogeneous nuclear r 99.9 4.5E-21 1.5E-25 132.7 14.1 81 60-142 7-87 (103)
9 2cqi_A Nucleolysin TIAR; RNA r 99.9 4.6E-21 1.6E-25 132.5 14.1 85 57-141 8-96 (103)
10 1wex_A Hypothetical protein (r 99.9 2.5E-21 8.4E-26 134.5 12.6 84 58-141 9-94 (104)
11 4fxv_A ELAV-like protein 1; RN 99.9 8.9E-22 3E-26 135.6 10.2 77 61-137 16-98 (99)
12 2d9p_A Polyadenylate-binding p 99.9 3.3E-21 1.1E-25 133.2 12.4 87 56-142 7-97 (103)
13 2cph_A RNA binding motif prote 99.9 4.1E-21 1.4E-25 133.5 13.0 86 56-141 7-100 (107)
14 2dgo_A Cytotoxic granule-assoc 99.9 1.2E-20 3.9E-25 133.0 14.8 86 56-141 7-98 (115)
15 1why_A Hypothetical protein ri 99.9 5.2E-21 1.8E-25 130.9 12.5 82 59-140 12-95 (97)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.9 6.2E-21 2.1E-25 131.5 12.0 84 59-142 7-96 (102)
17 3r27_A HnRNP L, heterogeneous 99.9 4.2E-21 1.4E-25 131.9 10.9 79 60-138 17-97 (100)
18 2do0_A HnRNP M, heterogeneous 99.9 3.1E-20 1.1E-24 130.5 15.3 82 59-140 10-96 (114)
19 2ytc_A PRE-mRNA-splicing facto 99.9 4.8E-21 1.6E-25 127.7 10.6 79 58-136 6-85 (85)
20 1x4a_A Splicing factor, argini 99.9 3E-20 1E-24 129.7 15.0 84 57-140 15-101 (109)
21 2cpd_A Apobec-1 stimulating pr 99.9 2.3E-20 7.9E-25 128.1 14.2 84 55-140 6-91 (99)
22 2dnh_A Bruno-like 5, RNA bindi 99.9 1.1E-20 3.7E-25 131.0 12.4 84 59-142 10-101 (105)
23 2dnq_A RNA-binding protein 4B; 99.9 9.7E-21 3.3E-25 127.8 11.9 79 61-141 5-83 (90)
24 2cpz_A CUG triplet repeat RNA- 99.9 1.5E-20 5E-25 132.5 13.3 84 58-141 19-108 (115)
25 1x5u_A Splicing factor 3B subu 99.9 1.2E-20 3.9E-25 130.9 12.5 85 57-141 8-98 (105)
26 1x4g_A Nucleolysin TIAR; struc 99.9 9.6E-21 3.3E-25 132.3 12.2 81 61-141 22-102 (109)
27 2cq0_A Eukaryotic translation 99.9 1.2E-20 4.3E-25 130.3 12.5 84 58-141 9-98 (103)
28 1x5p_A Negative elongation fac 99.8 3.7E-20 1.3E-24 126.7 14.5 82 58-141 9-90 (97)
29 2dgs_A DAZ-associated protein 99.8 1.8E-20 6.2E-25 128.6 13.0 82 59-141 5-92 (99)
30 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.4E-21 2.5E-25 141.1 11.9 83 59-141 34-122 (156)
31 2cqd_A RNA-binding region cont 99.8 3.7E-20 1.3E-24 130.7 14.8 83 56-139 9-97 (116)
32 1x4h_A RNA-binding protein 28; 99.8 2.1E-20 7.1E-25 130.8 13.4 85 57-141 8-104 (111)
33 2ad9_A Polypyrimidine tract-bi 99.8 8.7E-21 3E-25 134.5 11.1 83 60-142 27-111 (119)
34 1whw_A Hypothetical protein ri 99.8 2.1E-20 7.3E-25 128.1 12.8 81 61-141 5-91 (99)
35 2cpe_A RNA-binding protein EWS 99.8 2.2E-20 7.4E-25 131.2 12.8 85 57-141 8-106 (113)
36 1x5t_A Splicing factor 3B subu 99.8 1E-20 3.4E-25 129.0 10.7 80 62-141 3-89 (96)
37 1wi8_A EIF-4B, eukaryotic tran 99.8 2.6E-20 8.9E-25 129.0 12.9 82 58-141 9-97 (104)
38 1u6f_A Tcubp1, RNA-binding pro 99.8 2.3E-20 7.8E-25 135.8 13.2 84 58-141 36-125 (139)
39 2wbr_A GW182, gawky, LD47780P; 99.8 9.2E-21 3.1E-25 126.4 10.1 74 63-136 6-79 (89)
40 2dgt_A RNA-binding protein 30; 99.8 2.8E-20 9.7E-25 126.0 12.8 80 59-140 5-84 (92)
41 2do4_A Squamous cell carcinoma 99.8 2.9E-20 1E-24 127.8 13.0 84 57-140 10-98 (100)
42 2dnz_A Probable RNA-binding pr 99.8 2.6E-20 8.7E-25 126.7 12.4 79 62-140 3-87 (95)
43 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-20 4.9E-25 129.7 11.2 83 59-141 7-95 (102)
44 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-20 6.5E-25 128.0 11.5 79 62-140 7-92 (96)
45 2dnm_A SRP46 splicing factor; 99.8 1.5E-20 5.2E-25 129.9 10.9 84 58-141 7-96 (103)
46 4f25_A Polyadenylate-binding p 99.8 1.1E-20 3.8E-25 133.4 10.3 77 64-140 5-85 (115)
47 2la4_A Nuclear and cytoplasmic 99.8 8.6E-21 2.9E-25 130.7 9.6 77 62-138 25-101 (101)
48 2cpf_A RNA binding motif prote 99.8 1.9E-20 6.3E-25 128.2 11.0 80 62-141 3-91 (98)
49 1x4f_A Matrin 3; structural ge 99.8 2.3E-20 7.9E-25 131.0 11.4 80 61-140 22-104 (112)
50 3ex7_B RNA-binding protein 8A; 99.8 9.3E-21 3.2E-25 135.6 9.6 85 57-141 15-105 (126)
51 2fy1_A RNA-binding motif prote 99.8 3.6E-20 1.2E-24 131.0 12.3 81 61-141 4-89 (116)
52 2e5h_A Zinc finger CCHC-type a 99.8 5.6E-20 1.9E-24 124.8 12.8 79 58-136 10-94 (94)
53 2dng_A Eukaryotic translation 99.8 5.8E-20 2E-24 127.0 13.0 82 58-141 9-96 (103)
54 2cqh_A IGF-II mRNA-binding pro 99.8 1E-20 3.5E-25 128.4 8.9 79 62-141 6-86 (93)
55 2cpi_A CCR4-NOT transcription 99.8 4.4E-20 1.5E-24 129.5 11.9 81 59-139 10-102 (111)
56 3md1_A Nuclear and cytoplasmic 99.8 3.6E-20 1.2E-24 122.9 10.8 76 64-139 1-82 (83)
57 3s8s_A Histone-lysine N-methyl 99.8 3.3E-20 1.1E-24 130.1 11.1 78 62-139 4-87 (110)
58 1wf1_A RNA-binding protein RAL 99.8 7.5E-20 2.6E-24 127.9 12.7 79 60-140 23-102 (110)
59 2jvo_A Nucleolar protein 3; nu 99.8 4.1E-20 1.4E-24 129.1 11.0 82 57-140 24-105 (108)
60 2dgp_A Bruno-like 4, RNA bindi 99.8 4.3E-20 1.5E-24 128.2 10.9 84 58-141 7-99 (106)
61 2cqc_A Arginine/serine-rich sp 99.8 5.3E-20 1.8E-24 125.1 11.2 80 58-137 9-94 (95)
62 2dnp_A RNA-binding protein 14; 99.8 8E-20 2.7E-24 123.2 11.7 79 60-140 5-83 (90)
63 2err_A Ataxin-2-binding protei 99.8 3.9E-20 1.3E-24 129.4 10.3 83 56-138 21-107 (109)
64 2dhg_A TRNA selenocysteine ass 99.8 3.4E-20 1.2E-24 128.3 9.9 83 60-142 5-94 (104)
65 3bs9_A Nucleolysin TIA-1 isofo 99.8 4E-20 1.4E-24 123.7 9.9 77 62-138 4-86 (87)
66 2fc9_A NCL protein; structure 99.8 1.7E-19 5.7E-24 124.2 13.0 82 58-139 9-92 (101)
67 1oo0_B CG8781-PA, drosophila Y 99.8 5E-20 1.7E-24 128.7 10.5 84 57-140 19-108 (110)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.7E-20 1.9E-24 122.4 10.3 76 61-136 4-85 (85)
69 4a8x_A RNA-binding protein wit 99.8 7.3E-20 2.5E-24 122.6 10.8 77 63-139 3-86 (88)
70 2lxi_A RNA-binding protein 10; 99.8 1.4E-20 4.9E-25 127.5 7.4 77 64-140 1-85 (91)
71 2ywk_A Putative RNA-binding pr 99.8 4.2E-20 1.4E-24 125.7 9.4 80 58-137 10-94 (95)
72 2xnq_A Nuclear polyadenylated 99.8 1.2E-19 4E-24 124.3 11.6 81 56-138 14-95 (97)
73 2khc_A Testis-specific RNP-typ 99.8 1.1E-19 3.8E-24 128.5 11.6 79 58-136 34-118 (118)
74 1whx_A Hypothetical protein ri 99.8 2.1E-20 7E-25 131.3 7.8 77 62-138 8-84 (111)
75 2x1f_A MRNA 3'-END-processing 99.8 9.5E-20 3.3E-24 124.3 10.9 78 63-140 1-84 (96)
76 2hvz_A Splicing factor, argini 99.8 4.1E-20 1.4E-24 127.2 9.1 76 65-140 1-77 (101)
77 2kxn_B Transformer-2 protein h 99.8 5.6E-20 1.9E-24 132.4 10.1 82 58-139 40-127 (129)
78 2dgv_A HnRNP M, heterogeneous 99.8 5.4E-20 1.8E-24 124.4 9.3 80 61-140 5-88 (92)
79 1p27_B RNA-binding protein 8A; 99.8 5.2E-20 1.8E-24 127.8 9.3 83 57-139 16-104 (106)
80 2dh8_A DAZ-associated protein 99.8 7.4E-20 2.5E-24 126.8 10.0 83 58-141 10-98 (105)
81 2lkz_A RNA-binding protein 5; 99.8 5.5E-20 1.9E-24 125.6 8.8 78 60-137 5-94 (95)
82 2e5j_A Methenyltetrahydrofolat 99.8 2.3E-19 7.8E-24 122.7 12.0 81 58-139 13-95 (97)
83 2jvr_A Nucleolar protein 3; RN 99.8 6.1E-20 2.1E-24 128.8 9.1 77 62-138 26-105 (111)
84 3beg_B Splicing factor, argini 99.8 6.2E-20 2.1E-24 129.6 9.0 79 61-140 13-96 (115)
85 2cqg_A TDP-43, TAR DNA-binding 99.8 4.8E-19 1.7E-23 122.2 13.2 82 57-140 8-95 (103)
86 2kvi_A Nuclear polyadenylated 99.8 6.4E-20 2.2E-24 125.3 8.6 79 60-140 6-85 (96)
87 2fc8_A NCL protein; structure 99.8 4.3E-19 1.5E-23 122.2 12.6 83 58-140 9-94 (102)
88 2cqp_A RNA-binding protein 12; 99.8 8.4E-20 2.9E-24 124.9 8.9 79 60-138 11-95 (98)
89 2la6_A RNA-binding protein FUS 99.8 1.7E-19 5.9E-24 123.7 10.4 81 56-136 5-99 (99)
90 2cq2_A Hypothetical protein LO 99.8 1.6E-19 5.5E-24 126.9 10.4 80 62-141 23-109 (114)
91 1x4b_A Heterogeneous nuclear r 99.8 2E-19 6.7E-24 126.9 10.5 78 62-140 25-108 (116)
92 2jrs_A RNA-binding protein 39; 99.8 1.7E-19 6E-24 125.9 10.1 82 58-139 20-107 (108)
93 2div_A TRNA selenocysteine ass 99.8 2.1E-19 7.2E-24 123.2 9.7 79 61-139 6-95 (99)
94 1wg1_A KIAA1579 protein, homol 99.8 3.5E-19 1.2E-23 119.7 10.5 77 62-139 3-79 (88)
95 3ulh_A THO complex subunit 4; 99.8 3.4E-19 1.2E-23 123.8 10.7 78 59-136 24-106 (107)
96 3q2s_C Cleavage and polyadenyl 99.8 4.9E-20 1.7E-24 145.1 7.0 75 63-137 67-149 (229)
97 1nu4_A U1A RNA binding domain; 99.8 2.6E-19 8.8E-24 122.2 9.7 80 61-140 5-91 (97)
98 2lea_A Serine/arginine-rich sp 99.8 9E-20 3.1E-24 132.3 7.7 86 56-141 39-130 (135)
99 2cq4_A RNA binding motif prote 99.8 5.6E-20 1.9E-24 129.3 6.4 79 61-140 22-106 (114)
100 2dgw_A Probable RNA-binding pr 99.8 6.5E-19 2.2E-23 118.9 11.4 78 60-139 6-88 (91)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 7.2E-19 2.4E-23 127.6 12.3 79 57-135 56-140 (140)
102 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3E-19 1E-23 133.7 10.5 84 58-141 66-155 (165)
103 2a3j_A U1 small nuclear ribonu 99.8 3.2E-19 1.1E-23 128.0 9.9 80 61-140 26-112 (127)
104 2i2y_A Fusion protein consists 99.8 3.6E-19 1.2E-23 131.1 10.3 82 58-139 67-149 (150)
105 3ucg_A Polyadenylate-binding p 99.8 4.4E-19 1.5E-23 119.1 9.9 75 63-138 5-85 (89)
106 2m2b_A RNA-binding protein 10; 99.8 1.9E-19 6.6E-24 129.8 8.5 83 57-140 16-110 (131)
107 2dis_A Unnamed protein product 99.8 5.9E-19 2E-23 123.0 10.6 79 62-140 6-94 (109)
108 1wg5_A Heterogeneous nuclear r 99.8 1.1E-18 3.9E-23 120.8 11.8 80 58-138 9-94 (104)
109 2cpy_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 127.6 7.1 80 59-139 10-95 (114)
110 2kt5_A RNA and export factor-b 99.8 1.5E-18 5.2E-23 123.8 12.7 82 59-140 30-116 (124)
111 2cpx_A Hypothetical protein FL 99.8 6.6E-19 2.2E-23 123.9 10.6 82 60-141 21-108 (115)
112 1p1t_A Cleavage stimulation fa 99.8 7.5E-20 2.6E-24 126.4 5.6 82 60-141 4-91 (104)
113 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-19 6.6E-24 123.8 7.4 82 56-139 11-99 (100)
114 1s79_A Lupus LA protein; RRM, 99.8 3.6E-19 1.2E-23 123.3 8.7 77 60-137 7-88 (103)
115 3s7r_A Heterogeneous nuclear r 99.8 8.2E-19 2.8E-23 117.4 10.2 76 59-135 6-87 (87)
116 2rs2_A Musashi-1, RNA-binding 99.8 1E-18 3.5E-23 122.1 10.9 83 57-140 18-106 (109)
117 3pgw_S U1-70K; protein-RNA com 99.8 1.8E-18 6E-23 147.9 14.5 82 61-142 99-186 (437)
118 2e5i_A Heterogeneous nuclear r 99.8 2.1E-18 7.1E-23 123.1 12.5 77 64-140 25-104 (124)
119 2nlw_A Eukaryotic translation 99.8 6.4E-19 2.2E-23 122.3 9.4 80 59-138 10-100 (105)
120 3p5t_L Cleavage and polyadenyl 99.8 9E-20 3.1E-24 123.1 4.7 76 65-140 2-85 (90)
121 2ek1_A RNA-binding protein 12; 99.8 2.1E-19 7.1E-24 122.2 6.5 76 62-137 13-94 (95)
122 2e5g_A U6 snRNA-specific termi 99.8 2.2E-18 7.6E-23 117.1 11.6 78 62-140 6-84 (94)
123 1wez_A HnRNP H', FTP-3, hetero 99.8 1E-18 3.6E-23 120.7 10.0 79 59-139 10-93 (102)
124 1x5o_A RNA binding motif, sing 99.8 2.9E-18 1E-22 120.4 12.3 80 59-138 20-112 (114)
125 2kn4_A Immunoglobulin G-bindin 99.8 2.1E-18 7E-23 127.9 12.1 82 59-140 65-152 (158)
126 2jwn_A Embryonic polyadenylate 99.8 7.9E-19 2.7E-23 125.1 9.4 77 63-140 35-117 (124)
127 1x4e_A RNA binding motif, sing 99.8 2.3E-19 7.8E-24 119.6 5.9 75 62-136 3-83 (85)
128 2bz2_A Negative elongation fac 99.8 1.1E-18 3.8E-23 124.3 9.8 80 59-140 34-113 (121)
129 2e44_A Insulin-like growth fac 99.8 1.6E-18 5.5E-23 118.0 10.2 79 60-138 11-92 (96)
130 3ns6_A Eukaryotic translation 99.8 1.8E-19 6.3E-24 124.0 5.4 77 62-138 4-93 (100)
131 1sjr_A Polypyrimidine tract-bi 99.8 1.1E-18 3.9E-23 129.7 10.0 80 61-140 43-126 (164)
132 1wf0_A TDP-43, TAR DNA-binding 99.8 9.8E-19 3.3E-23 117.4 8.2 77 62-140 3-80 (88)
133 3n9u_C Cleavage and polyadenyl 99.8 1.4E-18 4.6E-23 129.1 9.8 76 63-138 54-137 (156)
134 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-18 6E-23 121.8 9.8 77 62-138 6-85 (115)
135 1fjc_A Nucleolin RBD2, protein 99.8 8.5E-19 2.9E-23 119.4 7.7 82 59-140 11-93 (96)
136 3zzy_A Polypyrimidine tract-bi 99.8 5.1E-18 1.7E-22 121.8 11.5 79 62-140 26-108 (130)
137 3d2w_A TAR DNA-binding protein 99.8 1.9E-18 6.6E-23 116.4 8.8 78 59-140 6-86 (89)
138 2lcw_A RNA-binding protein FUS 99.6 3.9E-20 1.3E-24 130.6 0.0 81 60-140 3-97 (116)
139 2db1_A Heterogeneous nuclear r 99.8 2.4E-18 8.3E-23 121.9 9.3 78 59-137 12-97 (118)
140 2hzc_A Splicing factor U2AF 65 99.8 2.3E-18 7.7E-23 115.1 8.6 72 62-134 4-86 (87)
141 2hgl_A HNRPF protein, heteroge 99.8 1.6E-18 5.4E-23 125.8 7.9 79 58-137 38-124 (136)
142 1fj7_A Nucleolin RBD1, protein 99.8 5.1E-18 1.7E-22 116.7 10.0 80 60-140 13-97 (101)
143 2mss_A Protein (musashi1); RNA 99.7 1.3E-18 4.4E-23 113.2 6.0 69 66-135 1-75 (75)
144 2hgn_A Heterogeneous nuclear r 99.7 6.6E-19 2.3E-23 128.3 4.8 79 59-139 41-124 (139)
145 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.2E-18 4.2E-23 113.7 5.7 70 65-135 1-76 (77)
146 2dnn_A RNA-binding protein 12; 99.7 8.6E-18 2.9E-22 117.5 10.0 75 61-137 13-92 (109)
147 2ki2_A SS-DNA binding protein 99.7 4.7E-19 1.6E-23 119.3 3.2 75 65-140 2-82 (90)
148 3tyt_A Heterogeneous nuclear r 99.7 1.2E-17 4.1E-22 129.2 11.6 77 63-139 3-81 (205)
149 2krb_A Eukaryotic translation 99.7 1.6E-18 5.5E-23 114.6 5.7 69 64-132 1-80 (81)
150 1wel_A RNA-binding protein 12; 99.7 2.9E-18 1E-22 122.4 6.7 78 60-138 21-104 (124)
151 2diu_A KIAA0430 protein; struc 99.7 1.5E-17 5.1E-22 111.9 9.4 73 64-140 8-86 (96)
152 3egn_A RNA-binding protein 40; 99.7 6.4E-18 2.2E-22 123.4 7.8 81 61-141 42-133 (143)
153 4f02_A Polyadenylate-binding p 99.7 2E-17 7E-22 128.4 10.6 79 61-139 12-96 (213)
154 2lmi_A GRSF-1, G-rich sequence 99.7 6.1E-18 2.1E-22 117.7 6.4 79 59-138 6-92 (107)
155 4f02_A Polyadenylate-binding p 99.7 4.4E-18 1.5E-22 132.1 6.2 78 63-140 102-183 (213)
156 2f3j_A RNA and export factor b 99.7 2.5E-17 8.6E-22 124.7 9.6 78 61-138 85-167 (177)
157 1iqt_A AUF1, heterogeneous nuc 99.7 4.9E-18 1.7E-22 110.3 4.3 69 66-135 1-75 (75)
158 3md3_A Nuclear and cytoplasmic 99.7 1.1E-16 3.6E-21 118.4 11.9 79 59-137 82-166 (166)
159 2xs2_A Deleted in azoospermia- 99.7 6.2E-18 2.1E-22 116.4 4.7 79 60-140 5-88 (102)
160 1fxl_A Paraneoplastic encephal 99.7 8.2E-17 2.8E-21 119.2 11.1 77 63-139 1-83 (167)
161 3pgw_A U1-A; protein-RNA compl 99.7 6E-16 2.1E-20 124.5 16.6 80 60-139 5-91 (282)
162 2hgm_A HNRPF protein, heteroge 99.7 3.7E-17 1.3E-21 117.0 7.7 77 59-137 37-120 (126)
163 3sde_A Paraspeckle component 1 99.7 1.4E-16 4.6E-21 127.4 11.9 80 58-137 16-95 (261)
164 2yh0_A Splicing factor U2AF 65 99.7 1.7E-16 5.9E-21 120.9 11.9 80 61-140 111-196 (198)
165 2dit_A HIV TAT specific factor 99.7 5E-16 1.7E-20 108.8 13.3 82 59-140 10-104 (112)
166 2qfj_A FBP-interacting repress 99.7 1.1E-16 3.9E-21 123.5 10.7 78 62-139 123-206 (216)
167 1l3k_A Heterogeneous nuclear r 99.7 1E-16 3.6E-21 121.9 10.0 80 61-141 101-186 (196)
168 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-16 4.7E-21 118.3 10.3 77 63-139 2-84 (168)
169 3pgw_A U1-A; protein-RNA compl 99.7 2.8E-16 9.6E-21 126.4 12.3 77 60-136 203-281 (282)
170 3md3_A Nuclear and cytoplasmic 99.7 3.3E-16 1.1E-20 115.8 10.8 75 65-139 1-80 (166)
171 2adc_A Polypyrimidine tract-bi 99.7 1.7E-16 5.9E-21 124.4 9.8 80 60-139 30-111 (229)
172 2dha_A FLJ20171 protein; RRM d 99.7 5E-17 1.7E-21 115.9 5.8 76 61-137 20-104 (123)
173 2g4b_A Splicing factor U2AF 65 99.7 2.5E-16 8.7E-21 117.4 9.9 75 62-136 92-172 (172)
174 2dnl_A Cytoplasmic polyadenyla 99.7 3E-16 1E-20 110.3 9.5 74 62-138 6-88 (114)
175 1l3k_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 119.2 9.6 81 58-139 7-93 (196)
176 2adc_A Polypyrimidine tract-bi 99.6 7.1E-16 2.4E-20 120.9 10.7 77 62-138 149-228 (229)
177 1qm9_A Polypyrimidine tract-bi 99.6 6.3E-16 2.1E-20 118.1 10.1 77 62-138 118-197 (198)
178 2g4b_A Splicing factor U2AF 65 99.6 7.4E-16 2.5E-20 114.8 9.9 75 63-138 3-88 (172)
179 1fje_B Nucleolin RBD12, protei 99.6 7.2E-16 2.4E-20 115.4 9.6 79 60-138 95-174 (175)
180 1qm9_A Polypyrimidine tract-bi 99.6 3.9E-16 1.3E-20 119.3 8.3 77 63-139 2-80 (198)
181 1b7f_A Protein (SXL-lethal pro 99.6 1.4E-15 4.6E-20 112.9 10.7 75 61-135 86-168 (168)
182 3nmr_A Cugbp ELAV-like family 99.6 6.9E-16 2.4E-20 115.1 9.0 76 61-136 92-175 (175)
183 2qfj_A FBP-interacting repress 99.6 1E-15 3.5E-20 118.1 9.8 78 62-139 26-109 (216)
184 2cjk_A Nuclear polyadenylated 99.6 4E-16 1.4E-20 115.8 7.0 75 63-138 86-166 (167)
185 2yh0_A Splicing factor U2AF 65 99.6 1.3E-15 4.5E-20 115.9 10.0 76 63-139 3-89 (198)
186 2voo_A Lupus LA protein; RNA-b 99.6 1.3E-15 4.5E-20 116.7 9.3 74 64-138 109-187 (193)
187 3nmr_A Cugbp ELAV-like family 99.6 1.2E-15 4.1E-20 113.8 8.6 77 63-139 2-89 (175)
188 2pe8_A Splicing factor 45; RRM 99.6 3.7E-15 1.3E-19 103.4 10.5 76 62-137 6-93 (105)
189 1fxl_A Paraneoplastic encephal 99.6 1.9E-15 6.6E-20 111.7 9.2 75 61-135 85-167 (167)
190 2j8a_A Histone-lysine N-methyl 99.6 1.2E-15 4.1E-20 108.3 6.9 73 65-137 3-95 (136)
191 3smz_A Protein raver-1, ribonu 99.6 3.7E-15 1.3E-19 119.9 10.4 81 60-140 180-266 (284)
192 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.6E-14 5.6E-19 99.1 12.1 76 64-141 10-93 (100)
193 3smz_A Protein raver-1, ribonu 99.6 7.7E-15 2.6E-19 118.1 11.8 74 63-137 21-94 (284)
194 3tht_A Alkylated DNA repair pr 99.6 5.4E-15 1.9E-19 122.3 9.7 76 61-136 15-97 (345)
195 1fje_B Nucleolin RBD12, protei 99.6 9.8E-15 3.4E-19 109.1 10.3 81 59-140 8-93 (175)
196 2cjk_A Nuclear polyadenylated 99.6 4.8E-15 1.7E-19 109.8 8.4 74 63-138 2-81 (167)
197 2ghp_A U4/U6 snRNA-associated 99.6 7.6E-15 2.6E-19 118.6 10.0 78 60-138 206-291 (292)
198 3tyt_A Heterogeneous nuclear r 99.6 4.5E-15 1.5E-19 114.7 7.4 74 62-135 121-204 (205)
199 2ghp_A U4/U6 snRNA-associated 99.5 3.5E-14 1.2E-18 114.7 9.8 78 63-140 116-199 (292)
200 3v4m_A Splicing factor U2AF 65 99.5 7.1E-14 2.4E-18 96.8 9.1 75 63-137 4-96 (105)
201 1jmt_A Splicing factor U2AF 35 99.5 8.7E-15 3E-19 101.3 3.5 67 69-135 20-103 (104)
202 3sde_A Paraspeckle component 1 99.5 8.3E-14 2.8E-18 111.2 8.7 77 63-139 95-180 (261)
203 3ue2_A Poly(U)-binding-splicin 99.5 3.7E-13 1.3E-17 95.1 9.1 75 63-137 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.4 1.5E-12 5.3E-17 91.3 10.6 75 63-137 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 4.9E-12 1.7E-16 89.3 10.1 78 58-135 12-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 2.8E-12 9.6E-17 85.4 8.2 74 62-138 5-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 6.1E-11 2.1E-15 79.4 6.5 72 62-136 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 2.3E-09 7.8E-14 83.2 7.1 60 77-136 142-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 3.9E-08 1.3E-12 67.2 9.4 73 63-135 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.3 1.3E-05 4.6E-10 54.1 10.8 74 62-138 6-84 (104)
211 1wey_A Calcipressin 1; structu 98.2 6.3E-06 2.2E-10 55.9 8.1 75 64-138 5-84 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.9 8.5E-05 2.9E-09 51.7 8.4 76 59-136 19-95 (119)
213 1uw4_A UPF3X; nonsense mediate 97.6 0.00051 1.7E-08 45.6 8.8 73 65-137 2-87 (91)
214 1whv_A Poly(A)-specific ribonu 97.6 0.00037 1.3E-08 46.5 7.6 55 63-120 15-69 (100)
215 3ctr_A Poly(A)-specific ribonu 97.3 0.00038 1.3E-08 46.6 4.7 55 64-121 6-60 (101)
216 3p3d_A Nucleoporin 53; structu 97.2 0.00048 1.6E-08 48.6 5.2 72 63-136 6-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 97.1 0.00032 1.1E-08 59.9 3.5 53 65-118 54-107 (464)
218 2l08_A Regulator of nonsense t 97.0 0.0026 9.1E-08 42.5 6.7 73 64-136 9-94 (97)
219 2i2y_A Fusion protein consists 95.5 0.0043 1.5E-07 44.5 1.5 38 100-138 13-51 (150)
220 2kn4_A Immunoglobulin G-bindin 94.5 0.021 7.1E-07 41.0 2.7 25 99-123 12-36 (158)
221 3d45_A Poly(A)-specific ribonu 93.3 0.34 1.1E-05 41.8 8.4 55 64-121 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 79.1 1.3 4.6E-05 27.4 2.6 68 66-136 2-75 (76)
223 3fry_A Probable copper-exporti 65.4 15 0.00053 21.7 5.1 55 64-119 6-60 (73)
224 3ts2_A Protein LIN-28 homolog 57.6 2.6 9E-05 30.0 0.4 28 79-108 2-29 (148)
225 4a4j_A Pacszia, cation-transpo 50.4 29 0.00098 19.8 4.4 54 66-119 5-61 (69)
226 2crl_A Copper chaperone for su 46.8 53 0.0018 20.8 7.4 54 65-119 21-75 (98)
227 3dxs_X Copper-transporting ATP 44.3 45 0.0015 19.3 5.7 54 66-119 5-62 (74)
228 3j21_T 50S ribosomal protein L 35.5 70 0.0024 20.3 4.6 53 67-119 25-82 (86)
229 2exu_A Transcription initiatio 34.5 72 0.0025 23.7 5.2 36 91-126 139-175 (200)
230 1yg0_A COP associated protein; 32.4 64 0.0022 17.6 6.5 54 66-119 4-60 (66)
231 3h7h_B Transcription elongatio 32.0 80 0.0027 20.8 4.6 35 90-124 40-75 (106)
232 1kvi_A Copper-transporting ATP 31.0 79 0.0027 18.2 6.5 57 64-120 9-69 (79)
233 3lpe_A Putative transcription 30.2 1.1E+02 0.0036 19.4 5.8 47 77-123 21-73 (92)
234 4eyt_A Telomerase associated p 30.1 1.1E+02 0.0038 19.7 8.0 57 62-120 10-66 (129)
235 2g9o_A Copper-transporting ATP 29.8 97 0.0033 18.8 5.1 55 66-120 6-64 (90)
236 2xmw_A PACS-N, cation-transpor 28.6 79 0.0027 17.4 6.5 54 66-119 6-62 (71)
237 1q8l_A Copper-transporting ATP 28.0 97 0.0033 18.3 7.7 57 64-120 10-70 (84)
238 1cpz_A Protein (COPZ); copper 26.5 85 0.0029 17.1 7.6 54 66-119 3-60 (68)
239 2ew9_A Copper-transporting ATP 26.1 1.4E+02 0.0049 19.6 5.5 56 65-120 82-141 (149)
240 1aw0_A Menkes copper-transport 25.6 93 0.0032 17.2 4.7 55 66-120 6-64 (72)
241 1osd_A MERP, hypothetical prot 24.7 97 0.0033 17.1 7.2 54 66-119 6-63 (72)
242 3fut_A Dimethyladenosine trans 24.6 56 0.0019 25.3 3.2 31 65-96 111-141 (271)
243 2l3m_A Copper-ION-binding prot 24.5 98 0.0033 17.1 6.1 54 66-119 8-65 (71)
244 1y3j_A Copper-transporting ATP 23.8 1.1E+02 0.0037 17.4 5.5 55 66-120 6-64 (77)
245 1p6t_A Potential copper-transp 22.8 1.7E+02 0.0058 19.3 7.0 56 65-120 76-135 (151)
246 2kt2_A Mercuric reductase; nme 22.2 1.1E+02 0.0037 16.8 6.4 53 66-118 3-58 (69)
247 2e5p_A Protein PHF1, PHD finge 21.7 90 0.0031 18.8 2.9 19 89-109 28-46 (68)
248 1vq8_S 50S ribosomal protein L 21.6 83 0.0028 19.9 3.0 49 67-115 24-77 (85)
249 2ofg_X Zinc-transporting ATPas 21.5 1.6E+02 0.0056 18.7 7.7 55 65-119 10-68 (111)
250 3uzu_A Ribosomal RNA small sub 21.2 31 0.001 26.9 1.1 33 65-97 115-147 (279)
251 3cjk_B Copper-transporting ATP 21.1 1.2E+02 0.0042 17.0 6.6 54 66-119 5-62 (75)
252 2kyz_A Heavy metal binding pro 20.3 95 0.0033 17.2 3.0 51 67-118 5-55 (67)
No 1
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.4e-21 Score=136.52 Aligned_cols=82 Identities=22% Similarity=0.380 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCC-----eEeEEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-----QSVRLS 133 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g-----~~l~v~ 133 (198)
......++|||+|||+++++++|+++|++||.|.+|+|+.+ +||||+|.+.++|++||+.||+..|+| +.|+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 33456889999999999999999999999999999999988 999999999999999999999999999 999999
Q ss_pred eccCCCCC
Q 029152 134 WGRNPANK 141 (198)
Q Consensus 134 ~a~~~~~~ 141 (198)
+++++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99986544
No 2
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.88 E-value=5.7e-23 Score=162.12 Aligned_cols=134 Identities=22% Similarity=0.313 Sum_probs=98.4
Q ss_pred ccchhhhc--chhhhhhhhhhhhccCCCCccccchhhhhh-h-----hcCCCCCCC-CCCCCCCCCCCCCCCeEEEcCCC
Q 029152 3 KRRHCCER--KGEREERTLLYKLCFHRNSSYCQFNIVFLL-V-----LIGGYASNG-APGQGPQSEGDSSNTTIFVGGLD 73 (198)
Q Consensus 3 ~~~~~c~~--~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~-----~~~~~~~~~-~~~~~~~~~~~~~~~~lfV~~l~ 73 (198)
.++++|+| +++|.+ +..|+++|..-...+..... . ..+...... ....+.....+...++|||+||+
T Consensus 68 ~~~~~C~ffakG~C~~----G~~C~y~H~lPt~~d~~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~ 143 (240)
T 3u1l_A 68 GQLFFCLFFAKGMCCL----GPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGID 143 (240)
T ss_dssp TCCSBCHHHHTTCCSC----GGGCSSBBSCCCHHHHHHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTT
T ss_pred CCCeEcCccccCCCCC----CCCCCccCCCCCccchhhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCC
Confidence 46899999 999999 99999998754433322111 0 001110000 00111122345678999999999
Q ss_pred CCC---------CHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCcee------------CCeEeEE
Q 029152 74 PNV---------TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI------------GKQSVRL 132 (198)
Q Consensus 74 ~~~---------~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~------------~g~~l~v 132 (198)
..+ +|++|+++|++||+|.+|+|+.+||||||+|.+.++|+.|++.|++..| .|+.|.|
T Consensus 144 ~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V 223 (240)
T 3u1l_A 144 GALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLV 223 (240)
T ss_dssp GGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEE
T ss_pred hhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEE
Confidence 998 7999999999999999999999999999999999999999999999999 8999999
Q ss_pred EeccCCCC
Q 029152 133 SWGRNPAN 140 (198)
Q Consensus 133 ~~a~~~~~ 140 (198)
+||+...+
T Consensus 224 ~wA~~~pn 231 (240)
T 3u1l_A 224 KWANEDPD 231 (240)
T ss_dssp EECC----
T ss_pred EEccCCCC
Confidence 99986544
No 3
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.4e-21 Score=133.86 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHh--CCceeCCeEeEEEec
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL--NGTVIGKQSVRLSWG 135 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~a 135 (198)
.....+.++|||+|||+.+++++|+++|++||.|.+|.|+++|+||||+|.+.++|++|++.| ++..|.|+.|.|+|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 344456789999999999999999999999999999999999999999999999999999976 577899999999999
Q ss_pred cCCCCC
Q 029152 136 RNPANK 141 (198)
Q Consensus 136 ~~~~~~ 141 (198)
+.+..+
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876544
No 4
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-21 Score=132.97 Aligned_cols=87 Identities=33% Similarity=0.513 Sum_probs=78.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.......+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455667899999999999999999999999999999999876 79999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 029152 132 LSWGRNPANKQ 142 (198)
Q Consensus 132 v~~a~~~~~~~ 142 (198)
|++++++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99998865443
No 5
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=133.80 Aligned_cols=84 Identities=29% Similarity=0.532 Sum_probs=77.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
......+.++|||+|||+.+++++|+++|++||.|.+|++.++++||||+|.+.++|++|++.|++..|+|+.|+|+|++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 34445667899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 6
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=135.86 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCC--ceeCCeEeEEEeccC
Q 029152 61 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRN 137 (198)
Q Consensus 61 ~~~~~~lfV~~l~~-~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~a~~ 137 (198)
..+.++|||+|||+ +++|++|+++|++||.|.+|.|+++++||||+|++.++|++|++.|++ ..|.|+.|.|+||+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 34678999999999 999999999999999999999999999999999999999999998875 469999999999986
Q ss_pred CC
Q 029152 138 PA 139 (198)
Q Consensus 138 ~~ 139 (198)
..
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 7
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.6e-22 Score=137.14 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEeEEEeccCC
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~a~~~ 138 (198)
..+.++|||+|||++++|++|+++|++||.|++|+|+++||||||+|++.++|++|++.|+ +..|+|+.|+|+||+++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 3457899999999999999999999999999999999999999999999999999999886 47899999999999876
Q ss_pred CCCC
Q 029152 139 ANKQ 142 (198)
Q Consensus 139 ~~~~ 142 (198)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5443
No 8
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=4.5e-21 Score=132.69 Aligned_cols=81 Identities=30% Similarity=0.573 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 139 (198)
...+.++|||+|||+++++++|+++|++||.|.+|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|+|++++.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 34457899999999999999999999999999999987 6799999999999999999999999999999999998766
Q ss_pred CCC
Q 029152 140 NKQ 142 (198)
Q Consensus 140 ~~~ 142 (198)
.+.
T Consensus 85 ~~~ 87 (103)
T 2dgu_A 85 QKR 87 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 9
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.6e-21 Score=132.52 Aligned_cols=85 Identities=32% Similarity=0.501 Sum_probs=77.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
........++|||+|||+.+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3445567899999999999999999999999999999999884 699999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029152 133 SWGRNPANK 141 (198)
Q Consensus 133 ~~a~~~~~~ 141 (198)
+|++++..+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999986543
No 10
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.5e-21 Score=134.49 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=75.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCC--ceeCCeEeEEEec
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWG 135 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~a 135 (198)
.....+.++|||+|||++++|++|+++|++||.|.+|.|+++|+||||+|.+.++|++|++.|++ ..|+|+.|.|+|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34455678999999999999999999999999999999999999999999999999999998865 4599999999999
Q ss_pred cCCCCC
Q 029152 136 RNPANK 141 (198)
Q Consensus 136 ~~~~~~ 141 (198)
+.+..+
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 876543
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=8.9e-22 Score=135.56 Aligned_cols=77 Identities=32% Similarity=0.557 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.||+..|+|+.|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999864 58999999999999999999999999999999999
Q ss_pred ccC
Q 029152 135 GRN 137 (198)
Q Consensus 135 a~~ 137 (198)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 12
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=133.24 Aligned_cols=87 Identities=29% Similarity=0.541 Sum_probs=78.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.......+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 33445557889999999999999999999999999999999854 79999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 029152 132 LSWGRNPANKQ 142 (198)
Q Consensus 132 v~~a~~~~~~~ 142 (198)
|+|++++..+.
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99999865543
No 13
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=133.49 Aligned_cols=86 Identities=24% Similarity=0.531 Sum_probs=78.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-------CcEEEEEeCCHHHHHHHHHHh-CCceeCC
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKL-NGTVIGK 127 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~a~~a~~~l-~~~~~~g 127 (198)
.........++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.| |+..|+|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34455667899999999999999999999999999999999876 799999999999999999999 9999999
Q ss_pred eEeEEEeccCCCCC
Q 029152 128 QSVRLSWGRNPANK 141 (198)
Q Consensus 128 ~~l~v~~a~~~~~~ 141 (198)
+.|+|+|++++...
T Consensus 87 ~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 87 RRLVLEWADSEVTV 100 (107)
T ss_dssp CBCEEEECCCCCCC
T ss_pred CEEEEEeCCCCCCC
Confidence 99999999976543
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.2e-20 Score=133.01 Aligned_cols=86 Identities=31% Similarity=0.672 Sum_probs=77.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~ 129 (198)
.......+.++|||+|||+.+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|++..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34455567889999999999999999999999999999999875 589999999999999999999999999999
Q ss_pred eEEEeccCCCCC
Q 029152 130 VRLSWGRNPANK 141 (198)
Q Consensus 130 l~v~~a~~~~~~ 141 (198)
|+|+|++++...
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999876544
No 15
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.2e-21 Score=130.88 Aligned_cols=82 Identities=23% Similarity=0.531 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeC--CeEeEEEecc
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWGR 136 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~a~ 136 (198)
....+.++|||+|||+++++++|+++|++||.|.+|++..+++||||+|.+.++|++|++.||+..|+ ++.|+|+|++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.2e-21 Score=131.54 Aligned_cols=84 Identities=26% Similarity=0.542 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
....+.++|||+|||+.+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999764 799999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 029152 133 SWGRNPANKQ 142 (198)
Q Consensus 133 ~~a~~~~~~~ 142 (198)
+|++++..+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9999865543
No 17
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=131.91 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCce--eCCeEeEEEeccC
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV--IGKQSVRLSWGRN 137 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~a~~ 137 (198)
...++++|||+|||+.+++++|+++|++||.|.+|.++++||||||+|++.++|.+|++.|++.. |.|+.|.|.+++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34567899999999999999999999999999999999999999999999999999999998764 8899999999987
Q ss_pred C
Q 029152 138 P 138 (198)
Q Consensus 138 ~ 138 (198)
+
T Consensus 97 k 97 (100)
T 3r27_A 97 Q 97 (100)
T ss_dssp S
T ss_pred c
Confidence 5
No 18
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.1e-20 Score=130.51 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
......++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34456789999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
+++....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9986543
No 19
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=127.75 Aligned_cols=79 Identities=39% Similarity=0.736 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHh-CCceeCCeEeEEEecc
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 136 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a~ 136 (198)
+..+.+.++|||+|||.++++++|+++|++||.|.+|+++++++||||+|.+.++|++|++.| ++..++|+.|+|+||+
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 344566789999999999999999999999999999999999999999999999999999999 9999999999999985
No 20
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3e-20 Score=129.75 Aligned_cols=84 Identities=23% Similarity=0.474 Sum_probs=76.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
......+.++|||+|||+++++++|+++|++||.|.+|+|..+ ++||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3455567789999999999999999999999999999999774 6899999999999999999999999999999999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
|+++...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987543
No 21
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-20 Score=128.11 Aligned_cols=84 Identities=26% Similarity=0.447 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccC--CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 55 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 55 ~~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~--G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
........+.++|||+|||+.+++++|+++|++| |.|.+|++. ++||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3445556678999999999999999999999999 999999875 789999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029152 133 SWGRNPAN 140 (198)
Q Consensus 133 ~~a~~~~~ 140 (198)
+|++++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987643
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.1e-20 Score=131.00 Aligned_cols=84 Identities=26% Similarity=0.531 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCC---eEe
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGK---QSV 130 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g---~~l 130 (198)
......++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..+.+ +.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34456899999999999999999999999999999999876 7999999999999999999999999988 999
Q ss_pred EEEeccCCCCCC
Q 029152 131 RLSWGRNPANKQ 142 (198)
Q Consensus 131 ~v~~a~~~~~~~ 142 (198)
+|+|++++..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999876543
No 23
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.7e-21 Score=127.78 Aligned_cols=79 Identities=25% Similarity=0.509 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
..+.++|||+|||+++++++|+++|++||.|.+|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|+|++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4467899999999999999999999999999999998 79999999999999999999999999999999999987654
Q ss_pred C
Q 029152 141 K 141 (198)
Q Consensus 141 ~ 141 (198)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1.5e-20 Score=132.53 Aligned_cols=84 Identities=26% Similarity=0.486 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 444556789999999999999999999999999999999875 48999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 029152 132 LSWGRNPANK 141 (198)
Q Consensus 132 v~~a~~~~~~ 141 (198)
|+|++++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999876543
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=130.86 Aligned_cols=85 Identities=25% Similarity=0.465 Sum_probs=76.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
........++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445567889999999999999999999999999999999774 5899999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 029152 131 RLSWGRNPANK 141 (198)
Q Consensus 131 ~v~~a~~~~~~ 141 (198)
+|++++++...
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876543
No 26
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.6e-21 Score=132.30 Aligned_cols=81 Identities=33% Similarity=0.675 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
....++|||+|||..+++++|+++|++||.|.+|+|+.+++||||+|.+.++|++|++.|++..|+|+.|+|+|++++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 029152 141 K 141 (198)
Q Consensus 141 ~ 141 (198)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 27
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=130.31 Aligned_cols=84 Identities=25% Similarity=0.494 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 344556799999999999999999999999999999999865 58999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 029152 132 LSWGRNPANK 141 (198)
Q Consensus 132 v~~a~~~~~~ 141 (198)
|+|++++...
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999876544
No 28
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-20 Score=126.69 Aligned_cols=82 Identities=26% Similarity=0.484 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
.....+.++|||+|| ++++++|+++|++||.|.+|.|..+++||||+|.+.++|++|++.|++..|+|+.|+|+|+++
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 344456789999996 899999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 029152 138 PANK 141 (198)
Q Consensus 138 ~~~~ 141 (198)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 29
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=128.59 Aligned_cols=82 Identities=24% Similarity=0.498 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
....+.++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++ |++..|+|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999864 6999999999999999999 9999999999999
Q ss_pred EeccCCCCC
Q 029152 133 SWGRNPANK 141 (198)
Q Consensus 133 ~~a~~~~~~ 141 (198)
++++++..+
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999976544
No 30
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=7.4e-21 Score=141.07 Aligned_cols=83 Identities=27% Similarity=0.471 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
....+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++||+.||+..|+++.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999764 589999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029152 133 SWGRNPANK 141 (198)
Q Consensus 133 ~~a~~~~~~ 141 (198)
+|+++....
T Consensus 114 ~~a~~~~~~ 122 (156)
T 1h2v_Z 114 DWDAGFKEG 122 (156)
T ss_dssp EEESCCCTT
T ss_pred EECCCCCCc
Confidence 999875543
No 31
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-20 Score=130.67 Aligned_cols=83 Identities=34% Similarity=0.510 Sum_probs=75.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~ 129 (198)
.....+.+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++||+.+++ .|+|+.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 34555667899999999999999999999999999999999874 58999999999999999999998 899999
Q ss_pred eEEEeccCCC
Q 029152 130 VRLSWGRNPA 139 (198)
Q Consensus 130 l~v~~a~~~~ 139 (198)
|+|+|++...
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999998653
No 32
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=130.77 Aligned_cols=85 Identities=21% Similarity=0.451 Sum_probs=76.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhC------Cce
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLN------GTV 124 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~------~~~ 124 (198)
.+......++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|+ +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3445566889999999999999999999999999999999853 7999999999999999999999 999
Q ss_pred eCCeEeEEEeccCCCCC
Q 029152 125 IGKQSVRLSWGRNPANK 141 (198)
Q Consensus 125 ~~g~~l~v~~a~~~~~~ 141 (198)
|+|+.|+|+|++++...
T Consensus 88 ~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSSCEEEEECCCCCCCC
T ss_pred EcCEEEEEEECCCCccC
Confidence 99999999999876544
No 33
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=134.51 Aligned_cols=83 Identities=16% Similarity=0.281 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEeEEEeccC
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRN 137 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~a~~ 137 (198)
...+.++|||+|||++++|++|+++|++||.|.+|+|+++|+||||+|++.++|++|++.|+ +..|.|+.|+|+||++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 34457899999999999999999999999999999999999999999999999999999887 4689999999999987
Q ss_pred CCCCC
Q 029152 138 PANKQ 142 (198)
Q Consensus 138 ~~~~~ 142 (198)
+..+.
T Consensus 107 k~~~~ 111 (119)
T 2ad9_A 107 KELKT 111 (119)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 65543
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=128.15 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
..+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999875 49999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 029152 135 GRNPANK 141 (198)
Q Consensus 135 a~~~~~~ 141 (198)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9986543
No 35
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-20 Score=131.19 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=76.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceE--------EEEEeCC------CcEEEEEeCCHHHHHHHHHHhCC
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--------SVKIPVG------KGCGFVQFANRENAEEALHKLNG 122 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~--------~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~ 122 (198)
......+.++|||+|||+++++++|+++|++||.|. .|+|+.+ ++||||+|.+.++|++|++.||+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 345566789999999999999999999999999998 6888765 68999999999999999999999
Q ss_pred ceeCCeEeEEEeccCCCCC
Q 029152 123 TVIGKQSVRLSWGRNPANK 141 (198)
Q Consensus 123 ~~~~g~~l~v~~a~~~~~~ 141 (198)
..|+|+.|+|++++++...
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 9999999999999876543
No 36
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=129.01 Aligned_cols=80 Identities=30% Similarity=0.584 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEE-EEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v-~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.+.++|||+|||+++++++|+++|++||.|.++ +|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 88875 69999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 029152 135 GRNPANK 141 (198)
Q Consensus 135 a~~~~~~ 141 (198)
++++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876544
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=128.96 Aligned_cols=82 Identities=28% Similarity=0.509 Sum_probs=73.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
.....+.++|||+|||+++++++|+++|++|| |.+|+|+.+ ++||||+|.+.++|++|| .|++..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34445678999999999999999999999999 999999754 689999999999999999 899999999999
Q ss_pred EEEeccCCCCC
Q 029152 131 RLSWGRNPANK 141 (198)
Q Consensus 131 ~v~~a~~~~~~ 141 (198)
+|++++++..+
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999886543
No 38
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=135.76 Aligned_cols=84 Identities=29% Similarity=0.473 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.......++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345566789999999999999999999999999999999764 68999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 029152 132 LSWGRNPANK 141 (198)
Q Consensus 132 v~~a~~~~~~ 141 (198)
|+++++...+
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999976544
No 39
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=9.2e-21 Score=126.36 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
.+..|||+||++.+||++|+++|.+||+|.++++..+||||||+|.++++|++|++.||+..+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999994
No 40
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=125.97 Aligned_cols=80 Identities=25% Similarity=0.484 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
......++|||+|||+++++++|+++|++||.|.+|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|++++++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 345567899999999999999999999999999999997 569999999999999999999999999999999999876
Q ss_pred CC
Q 029152 139 AN 140 (198)
Q Consensus 139 ~~ 140 (198)
..
T Consensus 83 ~~ 84 (92)
T 2dgt_A 83 LR 84 (92)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=127.75 Aligned_cols=84 Identities=19% Similarity=0.419 Sum_probs=76.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
......+.++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445566789999999999999999999999999999999875 49999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 029152 132 LSWGRNPAN 140 (198)
Q Consensus 132 v~~a~~~~~ 140 (198)
|+|++++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987654
No 42
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=126.75 Aligned_cols=79 Identities=30% Similarity=0.564 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.||+..|+|+.|+|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred cCCCC
Q 029152 136 RNPAN 140 (198)
Q Consensus 136 ~~~~~ 140 (198)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=129.70 Aligned_cols=83 Identities=30% Similarity=0.597 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
....+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999874 689999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029152 133 SWGRNPANK 141 (198)
Q Consensus 133 ~~a~~~~~~ 141 (198)
++++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 44
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=127.97 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 62 SSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~----~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.+.++|||+|||+++++++|+ ++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999 99999999999999876 79999999999999999999999999999999999
Q ss_pred ccCCCC
Q 029152 135 GRNPAN 140 (198)
Q Consensus 135 a~~~~~ 140 (198)
|++...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987644
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=129.87 Aligned_cols=84 Identities=25% Similarity=0.463 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
+....+.++|||+|||+++++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344556789999999999999999999999999999999764 68999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 029152 132 LSWGRNPANK 141 (198)
Q Consensus 132 v~~a~~~~~~ 141 (198)
|+++++....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999875443
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.1e-20 Score=133.42 Aligned_cols=77 Identities=32% Similarity=0.593 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 139 (198)
.++|||+|||+++++++|+++|++||.|.+|+|+.+ ||||||+|.+.++|++||+.|++..|+|+.|+|++++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 568999999999999999999999999999999874 6899999999999999999999999999999999998754
Q ss_pred C
Q 029152 140 N 140 (198)
Q Consensus 140 ~ 140 (198)
.
T Consensus 85 ~ 85 (115)
T 4f25_A 85 E 85 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 47
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.6e-21 Score=130.67 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
...++|||+|||.++++++|+++|++||.|.++++.++++||||+|.+.++|++|++.||+..|+|+.|+|+|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999863
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=128.23 Aligned_cols=80 Identities=28% Similarity=0.508 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC---------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~---------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
.+.++|||+|||+++++++|+++|++||.|.+|+|+. .++||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999874 3589999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029152 133 SWGRNPANK 141 (198)
Q Consensus 133 ~~a~~~~~~ 141 (198)
++++++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 49
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=130.95 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEeEEEeccC
Q 029152 61 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRN 137 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~-~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~a~~ 137 (198)
..+.++|||+|||++ +++++|+++|++||.|.+|.|+++|+||||+|.+.++|++|++.|+ +..|.|+.|+|+||+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 556789999999998 9999999999999999999999999999999999999999999885 4669999999999986
Q ss_pred CCC
Q 029152 138 PAN 140 (198)
Q Consensus 138 ~~~ 140 (198)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 544
No 50
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=9.3e-21 Score=135.59 Aligned_cols=85 Identities=25% Similarity=0.500 Sum_probs=77.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
.+....+.++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.||+..|+|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3455566889999999999999999999999999999999865 7999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 029152 131 RLSWGRNPANK 141 (198)
Q Consensus 131 ~v~~a~~~~~~ 141 (198)
+|+|++++...
T Consensus 95 ~v~~a~~~~~~ 105 (126)
T 3ex7_B 95 SVDWCFVRGPP 105 (126)
T ss_dssp EEEESEESSSC
T ss_pred EEEEecCCCCC
Confidence 99999876544
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=131.00 Aligned_cols=81 Identities=22% Similarity=0.511 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
..+.++|||+|||.++++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|+|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999999999885 499999999999999999999999999999999999
Q ss_pred cCCCCC
Q 029152 136 RNPANK 141 (198)
Q Consensus 136 ~~~~~~ 141 (198)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 52
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.6e-20 Score=124.79 Aligned_cols=79 Identities=25% Similarity=0.442 Sum_probs=72.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....+.++|||+|||..+++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 344556789999999999999999999999999999999774 68999999999999999999999999999999
Q ss_pred EEecc
Q 029152 132 LSWGR 136 (198)
Q Consensus 132 v~~a~ 136 (198)
|+||+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 53
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=5.8e-20 Score=126.98 Aligned_cols=82 Identities=26% Similarity=0.437 Sum_probs=73.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....+.++|||+|||+++++++|+++|++|| |.+|+|+.+ ++||||+|.+.++|++|+ .||+..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34455678999999999999999999999997 999999865 589999999999999999 8999999999999
Q ss_pred EEeccCCCCC
Q 029152 132 LSWGRNPANK 141 (198)
Q Consensus 132 v~~a~~~~~~ 141 (198)
|++++++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 54
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=128.36 Aligned_cols=79 Identities=24% Similarity=0.455 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCC-ceeCCeEeEEEeccCCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANRENAEEALHKLNG-TVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~-i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~a~~~~ 139 (198)
...++|||+|||+++++++|+++|++||. |..+.+ .+++||||+|.+.++|++|++.||+ ..|+|+.|+|+|++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 45789999999999999999999999999 555544 5689999999999999999999999 99999999999998765
Q ss_pred CC
Q 029152 140 NK 141 (198)
Q Consensus 140 ~~ 141 (198)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 55
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=129.49 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH---HHhccCCceEEEEEeCCC---------cEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLR---QPFSQYGEIASVKIPVGK---------GCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~---~~F~~~G~i~~v~i~~~k---------g~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
......++|||+|||+++++++|+ ++|++||.|.+|.|++++ |||||+|.+.++|++|++.||+..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 444567899999999999999999 999999999999998643 79999999999999999999999999
Q ss_pred CeEeEEEeccCCC
Q 029152 127 KQSVRLSWGRNPA 139 (198)
Q Consensus 127 g~~l~v~~a~~~~ 139 (198)
|+.|+|+||+++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998764
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3.6e-20 Score=122.87 Aligned_cols=76 Identities=29% Similarity=0.621 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
+.+|||+|||.++++++|+++|++||.|.++.++.+ ++||||+|.+.++|++|++.||+..++|+.|+|+|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999865 69999999999999999999999999999999999987
Q ss_pred CC
Q 029152 138 PA 139 (198)
Q Consensus 138 ~~ 139 (198)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 57
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=130.09 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.+.++|||+||+++++|++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999763 689999999999999999999999999999999999
Q ss_pred cCCC
Q 029152 136 RNPA 139 (198)
Q Consensus 136 ~~~~ 139 (198)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7543
No 58
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.83 E-value=7.5e-20 Score=127.95 Aligned_cols=79 Identities=32% Similarity=0.588 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 60 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~-~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
.....++|||+|||+. +++++|+++|++||.|.+|+| .++||||+|.+.++|++|++.|++..|+|+.|+|+|++++
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3445689999999999 999999999999999999999 6899999999999999999999999999999999999865
Q ss_pred CC
Q 029152 139 AN 140 (198)
Q Consensus 139 ~~ 140 (198)
..
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 59
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=4.1e-20 Score=129.13 Aligned_cols=82 Identities=30% Similarity=0.600 Sum_probs=73.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
........++|||+|||+++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.||+..++|+.|+|+|++
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34556678999999999999999999999999999999998 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7643
No 60
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=4.3e-20 Score=128.19 Aligned_cols=84 Identities=21% Similarity=0.459 Sum_probs=75.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCcee---CCe
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVI---GKQ 128 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~---~g~ 128 (198)
.....+.++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..+ .++
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 344566789999999999999999999999999999999874 68999999999999999999999987 899
Q ss_pred EeEEEeccCCCCC
Q 029152 129 SVRLSWGRNPANK 141 (198)
Q Consensus 129 ~l~v~~a~~~~~~ 141 (198)
.|+|++++++..+
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999876543
No 61
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.3e-20 Score=125.07 Aligned_cols=80 Identities=35% Similarity=0.502 Sum_probs=73.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....+.++|||+|||..+++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 444556789999999999999999999999999999999753 58999999999999999999999999999999
Q ss_pred EEeccC
Q 029152 132 LSWGRN 137 (198)
Q Consensus 132 v~~a~~ 137 (198)
|+|+++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999975
No 62
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8e-20 Score=123.24 Aligned_cols=79 Identities=22% Similarity=0.440 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 139 (198)
.....++|||+|||+++++++|+++|++||.|.+|+++ ++||||+|.+.++|++|++.||+..++|+.|+|++++++.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 34567899999999999999999999999999999998 5699999999999999999999999999999999998764
Q ss_pred C
Q 029152 140 N 140 (198)
Q Consensus 140 ~ 140 (198)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=129.38 Aligned_cols=83 Identities=34% Similarity=0.531 Sum_probs=76.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.........++|||+|||.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34555667899999999999999999999999999999999875 79999999999999999999999999999999
Q ss_pred EEeccCC
Q 029152 132 LSWGRNP 138 (198)
Q Consensus 132 v~~a~~~ 138 (198)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 64
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=128.26 Aligned_cols=83 Identities=33% Similarity=0.542 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcc-CCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCce-eCCeEeEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IGKQSVRL 132 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~-~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~-~~g~~l~v 132 (198)
...+.++|||+|||+++++++|+++|++ ||.|.+|+|+.+ ++||||+|.+.++|++|++.|++.. |+|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3456789999999999999999999999 999999999875 7999999999999999999999999 99999999
Q ss_pred EeccCCCCCC
Q 029152 133 SWGRNPANKQ 142 (198)
Q Consensus 133 ~~a~~~~~~~ 142 (198)
++++++..+.
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998765443
No 65
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=123.67 Aligned_cols=77 Identities=31% Similarity=0.690 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.+.++|||+|||.++++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.||+..++|+.|+|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred cCC
Q 029152 136 RNP 138 (198)
Q Consensus 136 ~~~ 138 (198)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 66
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=124.18 Aligned_cols=82 Identities=27% Similarity=0.349 Sum_probs=70.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~--~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.....+.++|||+|||+++++++|+++|++||.|.-+... ..++||||+|.+.++|++|++.||+..|+|+.|+|+|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3455668999999999999999999999999987322110 13799999999999999999999999999999999999
Q ss_pred cCCC
Q 029152 136 RNPA 139 (198)
Q Consensus 136 ~~~~ 139 (198)
+++.
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=5e-20 Score=128.75 Aligned_cols=84 Identities=21% Similarity=0.470 Sum_probs=76.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
.+....+.++|||+|||..+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|++..|+|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3445566789999999999999999999999999999999764 5999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 029152 131 RLSWGRNPAN 140 (198)
Q Consensus 131 ~v~~a~~~~~ 140 (198)
+|+|++++..
T Consensus 99 ~V~~a~~~~~ 108 (110)
T 1oo0_B 99 QVDWCFVKGP 108 (110)
T ss_dssp EEEESEESSC
T ss_pred EEEEcccCCC
Confidence 9999987543
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=5.7e-20 Score=122.43 Aligned_cols=76 Identities=28% Similarity=0.626 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
..+.++|||+|||+++++++|+++|++||.|.+++++.+ ++||||+|.+.++|++|++.||+..++|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999998653 79999999999999999999999999999999999
Q ss_pred cc
Q 029152 135 GR 136 (198)
Q Consensus 135 a~ 136 (198)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=122.59 Aligned_cols=77 Identities=34% Similarity=0.588 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
..++|||+|||.++++++|+++|++||.|.+++++. .++||||+|.+.++|++|++.||+..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999865 4789999999999999999999999999999999999
Q ss_pred cCCC
Q 029152 136 RNPA 139 (198)
Q Consensus 136 ~~~~ 139 (198)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 70
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=127.48 Aligned_cols=77 Identities=18% Similarity=0.334 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHh-CCceeCCeEeEEEec
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWG 135 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G-~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a 135 (198)
+++|||+|||+++||++|+++|++|| .|.+|+|+++ ||||||+|.+.++|++|++.+ ++..++|+.|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999763 699999999999999999977 466799999999999
Q ss_pred cCCCC
Q 029152 136 RNPAN 140 (198)
Q Consensus 136 ~~~~~ 140 (198)
+++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=125.68 Aligned_cols=80 Identities=30% Similarity=0.432 Sum_probs=72.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
+......++|||+|||+.+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344456789999999999999999999999999999999875 689999999999999999999999999999999
Q ss_pred EeccC
Q 029152 133 SWGRN 137 (198)
Q Consensus 133 ~~a~~ 137 (198)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99874
No 72
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=1.2e-19 Score=124.35 Aligned_cols=81 Identities=27% Similarity=0.453 Sum_probs=72.1
Q ss_pred CCCCCCCCCCeEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 56 PQSEGDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~-~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.......+.++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3445556789999999998 99999999999999999999984 89999999999999999999999999999999999
Q ss_pred ccCC
Q 029152 135 GRNP 138 (198)
Q Consensus 135 a~~~ 138 (198)
++++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9865
No 73
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.1e-19 Score=128.53 Aligned_cols=79 Identities=27% Similarity=0.503 Sum_probs=72.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344556789999999999999999999999999999999864 68999999999999999999999999999999
Q ss_pred EEecc
Q 029152 132 LSWGR 136 (198)
Q Consensus 132 v~~a~ 136 (198)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99985
No 74
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-20 Score=131.27 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+++++||||+|.+.++|++|++.||+..|+|+.|.|+|++..
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999764
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=9.5e-20 Score=124.31 Aligned_cols=78 Identities=22% Similarity=0.470 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
++++|||+|||..+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|++..++|+.|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3689999999999999999999999999999999865 6999999999999999999999999999999999998
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 76
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=127.23 Aligned_cols=76 Identities=30% Similarity=0.547 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
++|||+|||+++++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.|++..++|+.|+|++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 58999999999999999999999999999999986 99999999999999999999999999999999999987653
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=5.6e-20 Score=132.42 Aligned_cols=82 Identities=33% Similarity=0.506 Sum_probs=75.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++||+.|++..|+|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 444556789999999999999999999999999999999864 68999999999999999999999999999999
Q ss_pred EEeccCCC
Q 029152 132 LSWGRNPA 139 (198)
Q Consensus 132 v~~a~~~~ 139 (198)
|+|++++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998754
No 78
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=5.4e-20 Score=124.40 Aligned_cols=80 Identities=30% Similarity=0.493 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
....++|||+|||.++++++|+++|++||.|.+|+|++ +++||||+|.+.++|++|++.|++..|+|+.|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34578999999999999999999999999999999986 36999999999999999999999999999999999998
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 79
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=127.76 Aligned_cols=83 Identities=25% Similarity=0.518 Sum_probs=75.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
.+....+.++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.||+..|+|+.|
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3444556789999999999999999999999999999999764 6999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 029152 131 RLSWGRNPA 139 (198)
Q Consensus 131 ~v~~a~~~~ 139 (198)
+|+|++++.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998753
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=126.80 Aligned_cols=83 Identities=29% Similarity=0.445 Sum_probs=75.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.......++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++||+. ++..|+|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 345566899999999999999999999999999999999875 48999999999999999998 99999999999
Q ss_pred EEeccCCCCC
Q 029152 132 LSWGRNPANK 141 (198)
Q Consensus 132 v~~a~~~~~~ 141 (198)
|++++++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 81
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=125.60 Aligned_cols=78 Identities=17% Similarity=0.389 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCc--eEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVG------KGCGFVQFANRENAEEALHKLNGT----VIGK 127 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~--i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~----~~~g 127 (198)
....-.+|||+|||+++|+++|+++|++||. |.+|+++++ ||||||+|.+.++|++|++.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445678999999999999999999999995 678888764 699999999999999999999986 5899
Q ss_pred eEeEEEeccC
Q 029152 128 QSVRLSWGRN 137 (198)
Q Consensus 128 ~~l~v~~a~~ 137 (198)
+.|.|+||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999985
No 82
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=122.70 Aligned_cols=81 Identities=20% Similarity=0.480 Sum_probs=72.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~--~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.......++|||+|||+++++++|+++|++||.|. +.++ .+++||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34455678999999999999999999999999985 4544 46899999999999999999999999999999999999
Q ss_pred cCCC
Q 029152 136 RNPA 139 (198)
Q Consensus 136 ~~~~ 139 (198)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 83
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=6.1e-20 Score=128.83 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G-~i~~v~i~~--~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
...++|||+|||+++++++|+++|++|| +|..+.|.. ++|||||+|.+.++|++||+.||+..|+|+.|+|++++.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3468999999999999999999999999 999999863 5899999999999999999999999999999999999754
No 84
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=6.2e-20 Score=129.57 Aligned_cols=79 Identities=23% Similarity=0.409 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeE-----eEEEec
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS-----VRLSWG 135 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~-----l~v~~a 135 (198)
....++|||+|||+++++++|+++|++||+|.+|.|+.+ +||||+|.+.++|++||+.||+..|+|+. |+|+.+
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 345789999999999999999999999999999999888 99999999999999999999999999988 777777
Q ss_pred cCCCC
Q 029152 136 RNPAN 140 (198)
Q Consensus 136 ~~~~~ 140 (198)
.+...
T Consensus 92 ~~~~~ 96 (115)
T 3beg_B 92 GPRSP 96 (115)
T ss_dssp C----
T ss_pred CCCCC
Confidence 66443
No 85
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-19 Score=122.25 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=72.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
......+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++ +++.|+|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 3445556789999999999999999999999999999999775 5899999999999999998 4789999999
Q ss_pred EEEeccCCCC
Q 029152 131 RLSWGRNPAN 140 (198)
Q Consensus 131 ~v~~a~~~~~ 140 (198)
+|+|++++..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999987654
No 86
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.4e-20 Score=125.28 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 60 GDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~-~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
...+.++|||+|||+ .+++++|+++|++||.|.+|+|. ++||||+|.+.++|++|++.|++..+.|+.|+|++++++
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 345688999999998 99999999999999999999996 799999999999999999999999999999999999875
Q ss_pred CC
Q 029152 139 AN 140 (198)
Q Consensus 139 ~~ 140 (198)
..
T Consensus 84 ~~ 85 (96)
T 2kvi_A 84 AR 85 (96)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 87
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-19 Score=122.22 Aligned_cols=83 Identities=28% Similarity=0.471 Sum_probs=69.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.....+.++|||+|||+++++++|+++|+.|+.|.-+.... +++||||+|.+.++|++||+.||+..|+|+.|+|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34556678999999999999999999999886443332211 258999999999999999999999999999999999
Q ss_pred ccCCCC
Q 029152 135 GRNPAN 140 (198)
Q Consensus 135 a~~~~~ 140 (198)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 997654
No 88
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.4e-20 Score=124.94 Aligned_cols=79 Identities=28% Similarity=0.384 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
.....++|||+|||+++++++|+++|++||.|.++.++. .++||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 445578999999999999999999999999998766554 26999999999999999999999999999999999
Q ss_pred eccCC
Q 029152 134 WGRNP 138 (198)
Q Consensus 134 ~a~~~ 138 (198)
+++.+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 99864
No 89
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=123.72 Aligned_cols=81 Identities=30% Similarity=0.461 Sum_probs=73.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeCC------CcEEEEEeCCHHHHHHHHHHhC
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLN 121 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~--------v~i~~~------kg~afV~f~~~~~a~~a~~~l~ 121 (198)
.........++|||+|||.++++++|+++|++||.|.+ ++++.+ +|||||+|.+.++|++|++.||
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34455566899999999999999999999999999999 888764 5899999999999999999999
Q ss_pred CceeCCeEeEEEecc
Q 029152 122 GTVIGKQSVRLSWGR 136 (198)
Q Consensus 122 ~~~~~g~~l~v~~a~ 136 (198)
+..++|+.|+|++|+
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999985
No 90
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=126.86 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=73.4
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCcee-----CCeEeEEEe
Q 029152 62 SSNTTIFV--GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI-----GKQSVRLSW 134 (198)
Q Consensus 62 ~~~~~lfV--~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~-----~g~~l~v~~ 134 (198)
.+.++||| +||++++++++|+++|++||.|.+|.|+.+|+||||+|.+.++|++|++.||+.+| .++.|.|.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 34678999 77999999999999999999999999999999999999999999999999999998 689999999
Q ss_pred ccCCCCC
Q 029152 135 GRNPANK 141 (198)
Q Consensus 135 a~~~~~~ 141 (198)
++.....
T Consensus 103 a~~~p~~ 109 (114)
T 2cq2_A 103 VEKVQWS 109 (114)
T ss_dssp ESCCCCS
T ss_pred cccCccc
Confidence 9865443
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=126.89 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++||+. ++..|+|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34589999999999999999999999999999999875 58999999999999999997 999999999999999
Q ss_pred cCCCC
Q 029152 136 RNPAN 140 (198)
Q Consensus 136 ~~~~~ 140 (198)
+++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 92
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=125.89 Aligned_cols=82 Identities=29% Similarity=0.587 Sum_probs=75.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
+......++|||+|||..+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 444556789999999999999999999999999999999864 58999999999999999999999999999999
Q ss_pred EEeccCCC
Q 029152 132 LSWGRNPA 139 (198)
Q Consensus 132 v~~a~~~~ 139 (198)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 93
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=123.16 Aligned_cols=79 Identities=29% Similarity=0.555 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceE-EEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeE----
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA-SVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS---- 129 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~-~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~---- 129 (198)
....++|||+|||+++++++|+++|++||.|. +|+|+++ ++||||+|.+.++|++|++.||+..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999875 389999999999999999999999999999
Q ss_pred eEEEeccCCC
Q 029152 130 VRLSWGRNPA 139 (198)
Q Consensus 130 l~v~~a~~~~ 139 (198)
|+|+||++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998653
No 94
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.80 E-value=3.5e-19 Score=119.66 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 139 (198)
...++|||+|||+++++++|+++|++| .|.++++.+++|||||+|.+.++|++|++.||+..++|+.|+|+|+....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 346889999999999999999999999 99999998889999999999999999999999999999999999997643
No 95
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=3.4e-19 Score=123.77 Aligned_cols=78 Identities=21% Similarity=0.427 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
....+.++|||+|||+.+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456889999999999999999999999999999999854 6999999999999999999999999999999999
Q ss_pred ecc
Q 029152 134 WGR 136 (198)
Q Consensus 134 ~a~ 136 (198)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 96
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=4.9e-20 Score=145.08 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G--~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
..++|||+||++++++++|+++|++|| .|++|+|+.+ ||||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999875 58999999999999999999999999999999999
Q ss_pred ccC
Q 029152 135 GRN 137 (198)
Q Consensus 135 a~~ 137 (198)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 97
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=2.6e-19 Score=122.20 Aligned_cols=80 Identities=23% Similarity=0.514 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~----~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
..+.++|||+|||.++++++|+ ++|++||.|.+|.+.. +++||||+|.+.++|++|++.||+..++|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999 9999999999999873 57999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
|++++..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9987654
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=9e-20 Score=132.34 Aligned_cols=86 Identities=26% Similarity=0.500 Sum_probs=77.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~ 129 (198)
..+......++|||+|||+++++++|+++|++||.|..|+|+.+ ++||||+|.+.++|++|++.|++..|+|+.
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34455566789999999999999999999999999999999764 689999999999999999999999999999
Q ss_pred eEEEeccCCCCC
Q 029152 130 VRLSWGRNPANK 141 (198)
Q Consensus 130 l~v~~a~~~~~~ 141 (198)
|+|+|+++....
T Consensus 119 l~V~~a~~~~~~ 130 (135)
T 2lea_A 119 LRVQMARYGRPP 130 (135)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876443
No 99
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-20 Score=129.35 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
+...++|||+|||+++++++|+++|++||.|.+|+|+. .++||||+|.+.++|++|| .||+..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 34458999999999999999999999999999999975 3689999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 029152 135 GRNPAN 140 (198)
Q Consensus 135 a~~~~~ 140 (198)
++++..
T Consensus 101 a~~~~~ 106 (114)
T 2cq4_A 101 SQAEKN 106 (114)
T ss_dssp HHHHHH
T ss_pred cCCCcc
Confidence 986543
No 100
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.5e-19 Score=118.90 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.....++|||+|||+++++++|+++|++| .|.+|+|+.+ +|||||+|.+.++|++|++ ||+..|+|+.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 9999999874 6899999999999999999 999999999999999
Q ss_pred ccCCC
Q 029152 135 GRNPA 139 (198)
Q Consensus 135 a~~~~ 139 (198)
++++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=7.2e-19 Score=127.63 Aligned_cols=79 Identities=27% Similarity=0.592 Sum_probs=72.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
......+.++|||+|||..+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445567899999999999999999999999999999999764 7999999999999999999999999999999
Q ss_pred EEEec
Q 029152 131 RLSWG 135 (198)
Q Consensus 131 ~v~~a 135 (198)
+|+||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 102
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=3e-19 Score=133.71 Aligned_cols=84 Identities=23% Similarity=0.486 Sum_probs=75.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
+....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 444566789999999999999999999999999999999875 69999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 029152 132 LSWGRNPANK 141 (198)
Q Consensus 132 v~~a~~~~~~ 141 (198)
|.|+.++..+
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999876544
No 103
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=128.05 Aligned_cols=80 Identities=18% Similarity=0.435 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~----~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +||||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4457899999999999999876 6999999999998864 57999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
||+.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987654
No 104
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=3.6e-19 Score=131.10 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=76.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
.......++|||+|||+++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.||+..|+|+.|+|+|++
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 444556789999999999999999999999999999999987 8999999999999999999999999999999999998
Q ss_pred CCC
Q 029152 137 NPA 139 (198)
Q Consensus 137 ~~~ 139 (198)
++.
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 105
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=4.4e-19 Score=119.06 Aligned_cols=75 Identities=24% Similarity=0.498 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
+.++|||+|||+++++++|+++|++||.|.+++++.+ ++||||+|.+.++|++|+ .||+..++|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999764 689999999999999999 899999999999999998
Q ss_pred CC
Q 029152 137 NP 138 (198)
Q Consensus 137 ~~ 138 (198)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 106
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=129.77 Aligned_cols=83 Identities=19% Similarity=0.441 Sum_probs=74.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEE--EEEeCC------CcEEEEEeCCHHHHHHHHHHhCCc----e
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--VKIPVG------KGCGFVQFANRENAEEALHKLNGT----V 124 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~--v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~----~ 124 (198)
.+......++|||+|||++++|++|+++|++||.|.. |+|+++ ||||||+|.+. +|++|++.||+. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3444566789999999999999999999999999976 888764 59999999999 999999999999 9
Q ss_pred eCCeEeEEEeccCCCC
Q 029152 125 IGKQSVRLSWGRNPAN 140 (198)
Q Consensus 125 ~~g~~l~v~~a~~~~~ 140 (198)
|+|+.|+|+++++...
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999987543
No 107
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=122.99 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEe-------CCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEeE
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIP-------VGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVR 131 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~-i~~v~i~-------~~kg~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~ 131 (198)
.+.++|||+|||+++++++|+++|++||. |.+|.++ .+++||||+|.+.++|++|++.|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 458999999999999999999996 5899999999
Q ss_pred EEeccCCCC
Q 029152 132 LSWGRNPAN 140 (198)
Q Consensus 132 v~~a~~~~~ 140 (198)
|+|++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=120.84 Aligned_cols=80 Identities=29% Similarity=0.417 Sum_probs=71.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEE-EEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~-v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.......++|||+|||+++++++|+++|++||.|.+ |+|+. ++|||||+|.+.++|++||+. ++..|+++.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 344456789999999999999999999999999987 87765 379999999999999999997 99999999999
Q ss_pred EEeccCC
Q 029152 132 LSWGRNP 138 (198)
Q Consensus 132 v~~a~~~ 138 (198)
|.++.++
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9998754
No 109
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-19 Score=127.63 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCce-EEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i-~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
....+.++|||+|||+++++++|+++|++||.| ..|+|+. .+|||||+|.+.++|++||+. |+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 344567899999999999999999999999999 8888876 479999999999999999986 999999999999
Q ss_pred EeccCCC
Q 029152 133 SWGRNPA 139 (198)
Q Consensus 133 ~~a~~~~ 139 (198)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997643
No 110
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=1.5e-18 Score=123.78 Aligned_cols=82 Identities=21% Similarity=0.430 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
......++|||+|||..+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556789999999999999999999999999999999874 6999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
+|.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987543
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.6e-19 Score=123.88 Aligned_cols=82 Identities=27% Similarity=0.497 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCce----EEEEEeC--CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i----~~v~i~~--~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
...+.++|||+|||+++++++|+++|++||.| ..+++.. +++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467899999999999999999999999998 5666554 47999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029152 134 WGRNPANK 141 (198)
Q Consensus 134 ~a~~~~~~ 141 (198)
|++++..+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99986544
No 112
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.5e-20 Score=126.44 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
.+.+.++|||+|||..+++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.||+..++|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3445689999999999999999999999999999999864 6999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029152 134 WGRNPANK 141 (198)
Q Consensus 134 ~a~~~~~~ 141 (198)
|++++..+
T Consensus 84 ~a~~~~~~ 91 (104)
T 1p1t_A 84 NAASEKNK 91 (104)
T ss_dssp ETTCTTHH
T ss_pred eCCCccch
Confidence 99876543
No 113
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=123.84 Aligned_cols=82 Identities=27% Similarity=0.484 Sum_probs=68.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-------CcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 029152 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQ 128 (198)
Q Consensus 56 ~~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~a~~a~~~l~~~~~~g~ 128 (198)
.........++|||+|||.++++++|+++|++|| |.+|+|+.+ +|||||+|.+.++|++|+ .|++..|+|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3445556789999999999999999999999999 999999764 589999999999999999 8999999999
Q ss_pred EeEEEeccCCC
Q 029152 129 SVRLSWGRNPA 139 (198)
Q Consensus 129 ~l~v~~a~~~~ 139 (198)
.|+|++++++.
T Consensus 89 ~l~V~~a~~~~ 99 (100)
T 2j76_E 89 RIRVDVADQAQ 99 (100)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEeccCCC
Confidence 99999998753
No 114
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=123.32 Aligned_cols=77 Identities=18% Similarity=0.369 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.+...++|||+|||+++|+++|+++|++||.|.+|.|+. ++|||||+|.+.++|++|+. +++..++|+.|.|.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 445578999999999999999999999999999999987 47999999999999999999 899999999999999
Q ss_pred ccC
Q 029152 135 GRN 137 (198)
Q Consensus 135 a~~ 137 (198)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 115
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=8.2e-19 Score=117.37 Aligned_cols=76 Identities=22% Similarity=0.511 Sum_probs=69.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
....+.++|||+|||+++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++ +++..|+|+.|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 44567889999999999999999999999999999999764 5899999999999999996 5888999999999
Q ss_pred Eec
Q 029152 133 SWG 135 (198)
Q Consensus 133 ~~a 135 (198)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 116
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=1e-18 Score=122.15 Aligned_cols=83 Identities=25% Similarity=0.427 Sum_probs=69.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 57 ~~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
..+...+.++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.+ +..|+|+.|
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 3445566789999999999999999999999999999999874 689999999999999999976 599999999
Q ss_pred EEEeccCCCC
Q 029152 131 RLSWGRNPAN 140 (198)
Q Consensus 131 ~v~~a~~~~~ 140 (198)
+|+++.++..
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999987643
No 117
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=1.8e-18 Score=147.93 Aligned_cols=82 Identities=22% Similarity=0.442 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
....++|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|.+.++|++||..||+..|+|+.|.|+|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999864 79999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 029152 135 GRNPANKQ 142 (198)
Q Consensus 135 a~~~~~~~ 142 (198)
+++.....
T Consensus 179 a~~~~~~~ 186 (437)
T 3pgw_S 179 ERGRTVKG 186 (437)
T ss_pred eCCCCCCC
Confidence 98765543
No 118
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=123.13 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcE-EEEEeCCHHHHHHHHHHhCCceeCC--eEeEEEeccCCCC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC-GFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPAN 140 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a~~~~~ 140 (198)
...|||+||++.+++++|+++|++||.|++|.|....|| |||+|.+.++|++|++.|||..|.| +.|+|++|+++..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 345789999999999999999999999999998766697 9999999999999999999999987 6999999998654
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=122.30 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCC------CHHHHHHHhccCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 029152 59 EGDSSNTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ 128 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~------~e~~l~~~F~~~G~i~~v~i~~----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~ 128 (198)
......++|||+|||+.+ ++++|+++|++||.|.+|.|++ ++|||||+|.+.++|++|++.||+..|+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 344457899999999999 7899999999999999999984 479999999999999999999999999998
Q ss_pred -EeEEEeccCC
Q 029152 129 -SVRLSWGRNP 138 (198)
Q Consensus 129 -~l~v~~a~~~ 138 (198)
.|+|+++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999999754
No 120
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=9e-20 Score=123.09 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=65.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G--~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
.+|||+|||+++++++|+++|++|| .|.+++++.+ +|||||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999998764 5899999999999999999999999999999999998
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 121
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=2.1e-19 Score=122.19 Aligned_cols=76 Identities=26% Similarity=0.303 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
...++|||+|||+++++++|+++|++||.|.++.++. .++||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3468999999999999999999999999998776654 3699999999999999999999999999999999998
Q ss_pred cC
Q 029152 136 RN 137 (198)
Q Consensus 136 ~~ 137 (198)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 122
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=117.07 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCc-EEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg-~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
...++|||+|||+++++++|+++|++||.|.+|.+.+..+ ||||+|.+.++|++|++ |++..|+|+.|+|+++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3467999999999999999999999999999983332222 99999999999999999 999999999999999876543
No 123
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=120.74 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
......++|||+|||++++|++|+++|++||.| +|+|+.+ +|||||+|.+.++|++||+ +|+..|+++.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 344567899999999999999999999999954 8988764 6899999999999999995 79999999999999
Q ss_pred eccCCC
Q 029152 134 WGRNPA 139 (198)
Q Consensus 134 ~a~~~~ 139 (198)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987643
No 124
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=120.41 Aligned_cols=80 Identities=18% Similarity=0.455 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCcee--------
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVI-------- 125 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~-------- 125 (198)
..+.+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44556789999999999999999999999999999999875 68999999999999999999999999
Q ss_pred CCeEeEEEeccCC
Q 029152 126 GKQSVRLSWGRNP 138 (198)
Q Consensus 126 ~g~~l~v~~a~~~ 138 (198)
.++.|.|+|++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5778999999864
No 125
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=2.1e-18 Score=127.91 Aligned_cols=82 Identities=27% Similarity=0.523 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
......++|||+|||+++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999874 689999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029152 133 SWGRNPAN 140 (198)
Q Consensus 133 ~~a~~~~~ 140 (198)
+|++++..
T Consensus 145 ~~a~~~~~ 152 (158)
T 2kn4_A 145 QMARYGRP 152 (158)
T ss_dssp EEECCSSC
T ss_pred EECCCCCC
Confidence 99987543
No 126
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=7.9e-19 Score=125.13 Aligned_cols=77 Identities=26% Similarity=0.508 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
+.++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|+ .||+..|+|+.|+|+|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999764 699999999999999999 799999999999999998
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=119.59 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.+.++|||+|||+++++++|+++|++||.|.+++|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999875 689999999999999999999999999999988776
Q ss_pred c
Q 029152 136 R 136 (198)
Q Consensus 136 ~ 136 (198)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.78 E-value=1.1e-18 Score=124.27 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
......++|||+|| ++++++|+++|++||.|.+|.|..+++||||+|.+.++|++|++.|++..|+|+.|+|+|++++
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 33456789999996 6999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 029152 139 AN 140 (198)
Q Consensus 139 ~~ 140 (198)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 129
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=118.04 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEE-EeCCC--cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-IPVGK--GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~-i~~~k--g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
.....++|||+|||+++++++|+++|++||.|.+++ |+.++ +.|||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 344578999999999999999999999999999994 77653 559999999999999999999999999999999998
Q ss_pred CC
Q 029152 137 NP 138 (198)
Q Consensus 137 ~~ 138 (198)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.8e-19 Score=124.02 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCC-e
Q 029152 62 SSNTTIFVGGLDP------NVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK-Q 128 (198)
Q Consensus 62 ~~~~~lfV~~l~~------~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g-~ 128 (198)
...++|||+|||. ++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.||+..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999999753 6999999999999999999999999999 9
Q ss_pred EeEEEeccCC
Q 029152 129 SVRLSWGRNP 138 (198)
Q Consensus 129 ~l~v~~a~~~ 138 (198)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999753
No 131
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=1.1e-18 Score=129.71 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhCCceeCC--eEeEEEecc
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGR 136 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a~ 136 (198)
.....+|||+||++.+++++|+++|++||+|++|.|..+ ++||||+|.+.++|++|++.|||..|.+ +.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 344578999999999999999999999999999998643 5799999999999999999999999965 999999999
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7643
No 132
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-19 Score=117.37 Aligned_cols=77 Identities=32% Similarity=0.511 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 140 (198)
...++|||+|||+++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++++.. ...+.++.|+|.+++++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 34789999999999999999999999999999999875 89999999999999865432 3456899999999987654
No 133
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=129.11 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G--~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
..++|||+|||+++++++|+++|++|| .|.+|+|+.+ +|||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999864 58999999999999999999999999999999999
Q ss_pred ccCC
Q 029152 135 GRNP 138 (198)
Q Consensus 135 a~~~ 138 (198)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.7e-18 Score=121.76 Aligned_cols=77 Identities=18% Similarity=0.407 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
...++|||+|||+.+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.||+..++|+.|+|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 35689999999999999999999999999999999764 689999999999999999999999999999999999864
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=8.5e-19 Score=119.43 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEE-eCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
....+.++|||+|||..+++++|+++|++||.|..+.. ..++|||||+|.+.++|++|++.|++..|+|+.|+|+++++
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34456789999999999999999999999999877711 12479999999999999999999999999999999999987
Q ss_pred CCC
Q 029152 138 PAN 140 (198)
Q Consensus 138 ~~~ 140 (198)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 136
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=5.1e-18 Score=121.78 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-CCcE-EEEEeCCHHHHHHHHHHhCCceeCC--eEeEEEeccC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGC-GFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRN 137 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-~kg~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a~~ 137 (198)
...-+|||+||++.+++++|+++|++||.|.+|.|.. .++| |||+|.+.++|++|++.|||..|.+ +.|+|+|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 4456788999999999999999999999999998865 4688 9999999999999999999999987 8999999997
Q ss_pred CCC
Q 029152 138 PAN 140 (198)
Q Consensus 138 ~~~ 140 (198)
..-
T Consensus 106 ~~l 108 (130)
T 3zzy_A 106 TSL 108 (130)
T ss_dssp SSC
T ss_pred Cce
Confidence 644
No 137
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=1.9e-18 Score=116.44 Aligned_cols=78 Identities=35% Similarity=0.506 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCce--eCCeEeEEEec
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV--IGKQSVRLSWG 135 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~a 135 (198)
....+.++|||+|||++++|++|+++|++||.|.+|+|+++ ||||||+|.+.++|++ +++.. +.++.|.|.+|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 34556889999999999999999999999999999999874 8999999999999984 44444 56999999999
Q ss_pred cCCCC
Q 029152 136 RNPAN 140 (198)
Q Consensus 136 ~~~~~ 140 (198)
+++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87643
No 138
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-20 Score=130.61 Aligned_cols=81 Identities=31% Similarity=0.483 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeCC------CcEEEEEeCCHHHHHHHHHHhCCcee
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNGTVI 125 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~--------v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~ 125 (198)
+..+.++|||+|||..+++++|+++|++||.|.. |+|+.+ ++||||+|.+.++|++|++.||+..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999998 777764 68999999999999999999999999
Q ss_pred CCeEeEEEeccCCCC
Q 029152 126 GKQSVRLSWGRNPAN 140 (198)
Q Consensus 126 ~g~~l~v~~a~~~~~ 140 (198)
+|+.|+|++++++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987643
No 139
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=2.4e-18 Score=121.89 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=71.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~---i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
....+.++|||+|||+++++++|+++|++||. |..|+|+.+ +|||||+|.+.++|++||+ +|+..|+|+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 33456789999999999999999999999998 889998764 6899999999999999999 99999999999
Q ss_pred EEEeccC
Q 029152 131 RLSWGRN 137 (198)
Q Consensus 131 ~v~~a~~ 137 (198)
+|.++..
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999864
No 140
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=2.3e-18 Score=115.07 Aligned_cols=72 Identities=22% Similarity=0.476 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~----G-------~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
.+.++|||+|||+++++++|+++|++| | .|.++++.++++||||+|.+.++|++|+ .||+..++|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 457899999999999999999999999 8 9999999999999999999999999999 899999999999
Q ss_pred EEEe
Q 029152 131 RLSW 134 (198)
Q Consensus 131 ~v~~ 134 (198)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9973
No 141
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.6e-18 Score=125.84 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~---i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~ 129 (198)
.....+.++|||+|||+++|+++|+++|++||. |.+|+|+.+ +|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 344556789999999999999999999999999 888988764 6899999999999999999 9999999999
Q ss_pred eEEEeccC
Q 029152 130 VRLSWGRN 137 (198)
Q Consensus 130 l~v~~a~~ 137 (198)
|+|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999864
No 142
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-18 Score=116.67 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEE-----EEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-----VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~-----v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.....++|||+|||+++++++|+++|++||.|.. .....++|||||+|.+.++|++|++ ||+..|+|+.|+|++
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3445789999999999999999999999997755 2223458999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 029152 135 GRNPAN 140 (198)
Q Consensus 135 a~~~~~ 140 (198)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987643
No 143
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.3e-18 Score=113.20 Aligned_cols=69 Identities=30% Similarity=0.527 Sum_probs=65.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
+|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|.+.++|++|++ +++..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999998764 5899999999999999998 9999999999999986
No 144
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=6.6e-19 Score=128.28 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=69.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
......++|||+|||++++|++|+++|++|| |.+|+|+.+ +|||||+|.+.++|++|| .+|+..|+++.|+|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 4455678999999999999999999999999 779999864 799999999999999999 689999999999999
Q ss_pred eccCCC
Q 029152 134 WGRNPA 139 (198)
Q Consensus 134 ~a~~~~ 139 (198)
++.+..
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 987654
No 145
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=113.73 Aligned_cols=70 Identities=26% Similarity=0.526 Sum_probs=66.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999874 5899999999999999999999 9999999999987
No 146
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=117.49 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
..+..+|||+|||+++++++|+++|+.| .|.+|+|+.+ +|||||+|.+.++|++|| .+|+..|+|+.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3446799999999999999999999999 8999999863 799999999999999999 59999999999999988
Q ss_pred cC
Q 029152 136 RN 137 (198)
Q Consensus 136 ~~ 137 (198)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 147
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=4.7e-19 Score=119.32 Aligned_cols=75 Identities=31% Similarity=0.520 Sum_probs=67.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
++|||+|||.++++++|+++|++||.|.+++++.+ +|||||+|.+.+ |++|++.||+..++|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999864 689999999999 99999999999999999999999875
Q ss_pred CC
Q 029152 139 AN 140 (198)
Q Consensus 139 ~~ 140 (198)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 148
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=1.2e-17 Score=129.24 Aligned_cols=77 Identities=23% Similarity=0.416 Sum_probs=72.4
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 029152 63 SNTTIFVGGLD-PNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 63 ~~~~lfV~~l~-~~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 139 (198)
+.++|||+||+ +.+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++||+.||+..+.|+.|+|.+++.+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 47899999999 89999999999999999999999885 6999999999999999999999999999999999997543
No 149
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=114.56 Aligned_cols=69 Identities=25% Similarity=0.422 Sum_probs=64.0
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhccCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EeEE
Q 029152 64 NTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRL 132 (198)
Q Consensus 64 ~~~lfV~~l~~~~------~e~~l~~~F~~~G~i~~v~i~~----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v 132 (198)
+++|||+|||..+ ++++|+++|++||.|.+|.|++ ++|||||+|.+.++|++|++.||+..++|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 7799999999999999999874 479999999999999999999999999999 8876
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=122.36 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
.....++|||+|||+++++++|+++|++||.|.++.++. .+|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345668999999999999999999999999987743332 36999999999999999999 99999999999999
Q ss_pred eccCC
Q 029152 134 WGRNP 138 (198)
Q Consensus 134 ~a~~~ 138 (198)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99753
No 151
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=111.93 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=65.8
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHHhccC-CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 64 NTT-IFVGGLDPNVTDED----LRQPFSQY-GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 64 ~~~-lfV~~l~~~~~e~~----l~~~F~~~-G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
..+ |||+|||+.+++++ |+++|++| |+|.+| ..|+|||+|.+.++|++|++.|++..+.|+.|+|.+|+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 444 99999999999988 55899999 599988 249999999999999999999999999999999999997
Q ss_pred CCC
Q 029152 138 PAN 140 (198)
Q Consensus 138 ~~~ 140 (198)
.+.
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 654
No 152
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.4e-18 Score=123.41 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEe---CCCcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIP---VGKGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~--------v~i~---~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~ 129 (198)
..+.++|||+|||+.+++++|+++|++||.|.. +.+. .++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345689999999999999999999999998765 3332 35799999999999999999999999999999
Q ss_pred eEEEeccCCCCC
Q 029152 130 VRLSWGRNPANK 141 (198)
Q Consensus 130 l~v~~a~~~~~~ 141 (198)
|+|+||++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999875443
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=2e-17 Score=128.35 Aligned_cols=79 Identities=32% Similarity=0.556 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
..+.++|||+|||++++|++|+++|++||+|.+|+|+++ +|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 345689999999999999999999999999999999864 58999999999999999999999999999999999
Q ss_pred ccCCC
Q 029152 135 GRNPA 139 (198)
Q Consensus 135 a~~~~ 139 (198)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87543
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=6.1e-18 Score=117.70 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~---i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
....+.++|||+|||+++++++|+++|+.||. |.+|+|+.+ +|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 34456789999999999999999999999988 899999764 6899999999999999999 99999999999
Q ss_pred EEEeccCC
Q 029152 131 RLSWGRNP 138 (198)
Q Consensus 131 ~v~~a~~~ 138 (198)
+|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998753
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=4.4e-18 Score=132.12 Aligned_cols=78 Identities=32% Similarity=0.574 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
...+|||+|||+++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++.||+..|+|+.|+|+||+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4578999999999999999999999999999999864 699999999999999999999999999999999999875
Q ss_pred CC
Q 029152 139 AN 140 (198)
Q Consensus 139 ~~ 140 (198)
.+
T Consensus 182 ~~ 183 (213)
T 4f02_A 182 KE 183 (213)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 156
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.5e-17 Score=124.67 Aligned_cols=78 Identities=19% Similarity=0.402 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
....++|||+|||+.+++++|+++|++||.|++|.|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|+||
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345689999999999999999999999999999999764 699999999999999999999999999999999999
Q ss_pred cCC
Q 029152 136 RNP 138 (198)
Q Consensus 136 ~~~ 138 (198)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 764
No 157
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=4.9e-18 Score=110.34 Aligned_cols=69 Identities=28% Similarity=0.637 Sum_probs=64.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
+|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++ +++..++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999999998764 6899999999999999998 5889999999999886
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.1e-16 Score=118.42 Aligned_cols=79 Identities=28% Similarity=0.616 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
......++|||+|||..+++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.||+..++|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 34556789999999999999999999999999999999864 689999999999999999999999999999999
Q ss_pred EeccC
Q 029152 133 SWGRN 137 (198)
Q Consensus 133 ~~a~~ 137 (198)
+||++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99963
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=6.2e-18 Score=116.43 Aligned_cols=79 Identities=29% Similarity=0.535 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
.....++|||+|||+++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++ ++..++|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3445689999999999999999999999999999999874 6999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 029152 135 GRNPAN 140 (198)
Q Consensus 135 a~~~~~ 140 (198)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 986543
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=8.2e-17 Score=119.16 Aligned_cols=77 Identities=35% Similarity=0.621 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCC------cEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~k------g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
+.++|||+|||+++++++|+++|++||.|.++++++++ |||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999998764 999999999999999999999999999999999998
Q ss_pred CCC
Q 029152 137 NPA 139 (198)
Q Consensus 137 ~~~ 139 (198)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 161
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=6e-16 Score=124.49 Aligned_cols=80 Identities=24% Similarity=0.506 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~----~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
+..+.++|||+|||+++++++|+ ++|++||.|.+|++++ ++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 44568899999999999999977 8999999999999876 5799999999999999999999999999999999
Q ss_pred EeccCCC
Q 029152 133 SWGRNPA 139 (198)
Q Consensus 133 ~~a~~~~ 139 (198)
+|++...
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997654
No 162
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=3.7e-17 Score=117.02 Aligned_cols=77 Identities=31% Similarity=0.432 Sum_probs=68.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceE--EEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~--~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
......++|||+|||++++|++|+++|++| .|. +|+|+.+ +|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 344567899999999999999999999999 677 8988864 7999999999999999998 477999999999
Q ss_pred EEeccC
Q 029152 132 LSWGRN 137 (198)
Q Consensus 132 v~~a~~ 137 (198)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 163
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=1.4e-16 Score=127.41 Aligned_cols=80 Identities=30% Similarity=0.598 Sum_probs=75.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
.......++|||+|||+++|+++|+++|++||.|.+|.|.+++|||||+|.+.++|++|+..|++..|.|+.|+|.++.+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 44455678999999999999999999999999999999999999999999999999999999999999999999999875
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=1.7e-16 Score=120.86 Aligned_cols=80 Identities=20% Similarity=0.483 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
....++|||+|||..+++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.||+..|+|+.|+|+|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356789999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 029152 135 GRNPAN 140 (198)
Q Consensus 135 a~~~~~ 140 (198)
++++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 165
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5e-16 Score=108.82 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=70.5
Q ss_pred CCCCCCCeEEEcCCCCCCC-----------HHHHHHHhccCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhCCcee
Q 029152 59 EGDSSNTTIFVGGLDPNVT-----------DEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVI 125 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~-----------e~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~a~~a~~~l~~~~~ 125 (198)
....+.++|+|.||....+ +++|+++|++||.|.+|.|.. ++|||||+|.+.++|++|++.||+..+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3445688999999954432 589999999999999997753 479999999999999999999999999
Q ss_pred CCeEeEEEeccCCCC
Q 029152 126 GKQSVRLSWGRNPAN 140 (198)
Q Consensus 126 ~g~~l~v~~a~~~~~ 140 (198)
+|+.|+|+++.++..
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987543
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.1e-16 Score=123.50 Aligned_cols=78 Identities=23% Similarity=0.538 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
...++|||+|||..+++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|.+|++.||+..|+|+.|+|+|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34589999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred cCCC
Q 029152 136 RNPA 139 (198)
Q Consensus 136 ~~~~ 139 (198)
+++.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8764
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1e-16 Score=121.90 Aligned_cols=80 Identities=21% Similarity=0.455 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEe
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 134 (198)
....++|||+|||+++++++|+++|++||.|..|+|+.+ +|||||+|.+.++|++|++. ++..|+|+.|.|.|
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 345689999999999999999999999999999999864 68999999999999999985 89999999999999
Q ss_pred ccCCCCC
Q 029152 135 GRNPANK 141 (198)
Q Consensus 135 a~~~~~~ 141 (198)
+.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9886554
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=1.4e-16 Score=118.26 Aligned_cols=77 Identities=29% Similarity=0.499 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.|++..++|+.|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999998764 4899999999999999999999999999999999998
Q ss_pred CCC
Q 029152 137 NPA 139 (198)
Q Consensus 137 ~~~ 139 (198)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 169
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=2.8e-16 Score=126.45 Aligned_cols=77 Identities=23% Similarity=0.427 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCC-cEEEEEeCCHHHHHHHHHHhCCceeC-CeEeEEEecc
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGR 136 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~k-g~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~ 136 (198)
.....++|||+|||..+++++|+++|++||.|.+|+|+.++ +||||+|.+.++|++|++.||+..|+ |+.|+|+|++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 34457899999999999999999999999999999999876 99999999999999999999999999 9999999997
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.3e-16 Score=115.78 Aligned_cols=75 Identities=32% Similarity=0.579 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 139 (198)
++|||+|||.++++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.|++..+.|+.|+|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999764 5899999999999999999999999999999999997654
No 171
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=1.7e-16 Score=124.40 Aligned_cols=80 Identities=29% Similarity=0.508 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 60 GDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~-~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
...+.++|||+|||+ ++++++|+++|++||.|.+|+|+++ ++||||+|.+.++|++|++.|++..+.|+.|.|++++.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345678999999999 9999999999999999999999987 59999999999999999999999999999999999986
Q ss_pred CC
Q 029152 138 PA 139 (198)
Q Consensus 138 ~~ 139 (198)
..
T Consensus 110 ~~ 111 (229)
T 2adc_A 110 QN 111 (229)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=115.94 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCce----EEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i----~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
..+..+|||+|||+++++++|+++|++||.| ..|+|+.+ +|||||+|.+.++|++||+. |+..|+++.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3457899999999999999999999999875 67888753 69999999999999999995 99999999999
Q ss_pred EEeccC
Q 029152 132 LSWGRN 137 (198)
Q Consensus 132 v~~a~~ 137 (198)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=2.5e-16 Score=117.36 Aligned_cols=75 Identities=19% Similarity=0.513 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
...++|||+|||..+++++|+++|++||.|.+++++.+ +|||||+|.+.++|++|++.||+..++|+.|+|+||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999875 589999999999999999999999999999999997
Q ss_pred c
Q 029152 136 R 136 (198)
Q Consensus 136 ~ 136 (198)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=110.29 Aligned_cols=74 Identities=20% Similarity=0.420 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC---------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~---------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
...++|||+|||+++++++|+++|++||.|. +.++. ++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 77754 37999999999999999999884 477887777
Q ss_pred EeccCC
Q 029152 133 SWGRNP 138 (198)
Q Consensus 133 ~~a~~~ 138 (198)
..+...
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 765543
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=3.1e-16 Score=119.24 Aligned_cols=81 Identities=25% Similarity=0.447 Sum_probs=71.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
+......++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++. ++..++|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 344556789999999999999999999999999999999864 58999999999999999985 99999999999
Q ss_pred EEeccCCC
Q 029152 132 LSWGRNPA 139 (198)
Q Consensus 132 v~~a~~~~ 139 (198)
|.++....
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99997653
No 176
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=7.1e-16 Score=120.89 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhCCceeC-CeEeEEEeccCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 138 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G-~i~~v~i~~-~kg~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~~~ 138 (198)
.+.++|||+|||..+++++|+++|++|| .|..|+++. +++||||+|.+.++|++|++.|++..++ |+.|+|+|++++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4478999999999999999999999999 999999955 7899999999999999999999999999 999999999874
No 177
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=6.3e-16 Score=118.13 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhCCceeC-CeEeEEEeccCC
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 138 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G-~i~~v~i~~-~kg~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~~~ 138 (198)
.+.++|||+|||..+++++|+++|++|| .|.+|+++. ++++|||+|.+.++|++|++.||+..++ |+.|+|+|++++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4578999999999999999999999999 999999965 7899999999999999999999999999 999999999874
No 178
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=7.4e-16 Score=114.83 Aligned_cols=75 Identities=21% Similarity=0.447 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~----G-------~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
+.++|||+|||+++++++|+++|++| | .|.++++.++++||||+|.+.++|++|+ .|++..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 8999999999999999999999999999 7999999999999
Q ss_pred EEeccCC
Q 029152 132 LSWGRNP 138 (198)
Q Consensus 132 v~~a~~~ 138 (198)
|.++...
T Consensus 82 v~~~~~~ 88 (172)
T 2g4b_A 82 IRRPHDY 88 (172)
T ss_dssp EECCSSC
T ss_pred ecCCccc
Confidence 9998754
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=7.2e-16 Score=115.41 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEE-eCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
.....++|||+|||..+++++|+++|++||.|..+.. ..++|||||+|.+.++|.+|++.||+..|+|+.|+|+||+++
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 3446789999999999999999999999999887711 125799999999999999999999999999999999999875
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.9e-16 Score=119.25 Aligned_cols=77 Identities=30% Similarity=0.520 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 029152 63 SNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (198)
Q Consensus 63 ~~~~lfV~~l~~-~~~e~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 139 (198)
+.++|||+|||+ ++++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.|++..+.|+.|+|.+++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 368999999999 9999999999999999999999887 5999999999999999999999999999999999998654
No 181
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=1.4e-15 Score=112.85 Aligned_cols=75 Identities=29% Similarity=0.538 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCC--eEeEE
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRL 132 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v 132 (198)
....++|||+|||..+++++|+++|++||.|..+.++++ ++||||+|.+.++|.+|++.||+..++| +.|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 445789999999999999999999999999999999875 4899999999999999999999999987 99999
Q ss_pred Eec
Q 029152 133 SWG 135 (198)
Q Consensus 133 ~~a 135 (198)
+||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=6.9e-16 Score=115.07 Aligned_cols=76 Identities=25% Similarity=0.556 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeC---CeEeEE
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG---KQSVRL 132 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~v 132 (198)
....++|||+|||..+++++|+++|++||.|.+++++++ +|||||+|.+.++|++|++.||+..+. ++.|+|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 346789999999999999999999999999999999875 689999999999999999999998776 489999
Q ss_pred Eecc
Q 029152 133 SWGR 136 (198)
Q Consensus 133 ~~a~ 136 (198)
+||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 183
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=1e-15 Score=118.11 Aligned_cols=78 Identities=24% Similarity=0.524 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
.+.++|||+|||.++++++|+++|++||.|.+|+|+++ ++||||+|.+.++|++|++.|++..|+|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999999763 699999999999999999999999999999999988
Q ss_pred cCCC
Q 029152 136 RNPA 139 (198)
Q Consensus 136 ~~~~ 139 (198)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 7543
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=4e-16 Score=115.75 Aligned_cols=75 Identities=21% Similarity=0.480 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..++|||+|||.++++++|+++|++||.|.+++++.+ +|||||+|.+.++|++|++ +++..++|+.|+|+||.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 4679999999999999999999999999999999864 5899999999999999998 89999999999999998
Q ss_pred CC
Q 029152 137 NP 138 (198)
Q Consensus 137 ~~ 138 (198)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 185
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1.3e-15 Score=115.92 Aligned_cols=76 Identities=20% Similarity=0.425 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~----G-------~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
..++|||+|||+++++++|+++|++| | .|.++.+.+++|||||+|.+.++|++|+ .|++..|.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 6 7899999999999999999999999999 7999999999999
Q ss_pred EEeccCCC
Q 029152 132 LSWGRNPA 139 (198)
Q Consensus 132 v~~a~~~~ 139 (198)
|.++....
T Consensus 82 v~~~~~~~ 89 (198)
T 2yh0_A 82 IRRPHDYQ 89 (198)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987653
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.3e-15 Score=116.69 Aligned_cols=74 Identities=18% Similarity=0.351 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
.++|||+|||+++++++|+++|++||.|..|+|++ .+|||||+|.+.++|++|++.+ +..++|+.|+|.|++.-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 58999999999999999999999999999999986 3699999999999999999855 46999999999998753
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.2e-15 Score=113.79 Aligned_cols=77 Identities=27% Similarity=0.500 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeC--------CCcEEEEEeCCHHHHHHHHHHhCCceeC---CeEeE
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--------GKGCGFVQFANRENAEEALHKLNGTVIG---KQSVR 131 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~--------~kg~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~ 131 (198)
+.++|||+|||+++++++|+++|++||.|.+|+|++ +++||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 568999999999999999999999999999999974 4689999999999999999999998775 67888
Q ss_pred EEeccCCC
Q 029152 132 LSWGRNPA 139 (198)
Q Consensus 132 v~~a~~~~ 139 (198)
+.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877543
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=3.7e-15 Score=103.36 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhccCCceEEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 029152 62 SSNTTIFVGGLDP-----NVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (198)
Q Consensus 62 ~~~~~lfV~~l~~-----~~~e~~l~~~F~~~G~i~~v~i~~-------~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~ 129 (198)
.++++|+|.||.. +-++++|+++|++||.|.+|.|++ ++||+||+|.+.++|++|++.|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999963 236899999999999999999975 3699999999999999999999999999999
Q ss_pred eEEEeccC
Q 029152 130 VRLSWGRN 137 (198)
Q Consensus 130 l~v~~a~~ 137 (198)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 189
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=1.9e-15 Score=111.69 Aligned_cols=75 Identities=35% Similarity=0.654 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeE--eEE
Q 029152 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS--VRL 132 (198)
Q Consensus 61 ~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~--l~v 132 (198)
....++|||+|||..+++++|+++|++||.|.+++++.+ ++||||+|.+.++|++|++.||+..++|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345689999999999999999999999999999998764 599999999999999999999999999964 888
Q ss_pred Eec
Q 029152 133 SWG 135 (198)
Q Consensus 133 ~~a 135 (198)
+||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 190
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-15 Score=108.32 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=64.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCC----HHH----HHHHHH--HhCCce
Q 029152 65 TTIFVGGL----DPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN----REN----AEEALH--KLNGTV 124 (198)
Q Consensus 65 ~~lfV~~l----~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~----~~~----a~~a~~--~l~~~~ 124 (198)
++|||+|| |+.++|++|+++|++||+|.++.++.| +|||||+|.+ +++ |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999875 6999999996 333 788888 789999
Q ss_pred eCCeEeEEEeccC
Q 029152 125 IGKQSVRLSWGRN 137 (198)
Q Consensus 125 ~~g~~l~v~~a~~ 137 (198)
|+|+.|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=3.7e-15 Score=119.94 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 60 GDSSNTTIFVGGLDPNV-TDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~~-~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
.....++|||+|||+.+ ++++|+++|++||.|.+++|+.+ +|+|||+|.+.++|.+|++.||+..++|+.|+|.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999995 99999999999999999999875 7999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
|++++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987654
No 192
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-14 Score=99.13 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=62.9
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHhccCCceEEEEEe-CCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 64 NTTIFVGGLD-------PNVTDEDLRQPFSQYGEIASVKIP-VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 64 ~~~lfV~~l~-------~~~~e~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
..+|-|.-.. ..+++++|+++|++||.|.+|.|+ +++|||||+|.+.++|+.|++.++ .+.++.|+|+|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEc
Confidence 4456565433 468999999999999999999997 468999999999999999999754 467999999999
Q ss_pred cCCCCC
Q 029152 136 RNPANK 141 (198)
Q Consensus 136 ~~~~~~ 141 (198)
+++...
T Consensus 88 ~~~~~~ 93 (100)
T 2d9o_A 88 EGQPQD 93 (100)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 876543
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=7.7e-15 Score=118.10 Aligned_cols=74 Identities=22% Similarity=0.394 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 137 (198)
+.++|||+|||.++++++|+++|++|| |.++.+.+++|||||+|.+.++|++|++.|++..+.|+.|.|.++..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 94 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT 94 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC
Confidence 468999999999999999999999999 99999999999999999999999999999999999999999999753
No 194
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=5.4e-15 Score=122.26 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=67.6
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeC---Ce--EeEEE
Q 029152 61 DSSNTTIFVGG--LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG---KQ--SVRLS 133 (198)
Q Consensus 61 ~~~~~~lfV~~--l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~---g~--~l~v~ 133 (198)
+.++.+|||+| |+..++|++|+++|++||+|.+|.+..+|+||||+|.+.++|++|++.|||.++. |+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 45678999999 5788999999999999999999999999999999999999999999999999882 34 57777
Q ss_pred ecc
Q 029152 134 WGR 136 (198)
Q Consensus 134 ~a~ 136 (198)
++.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 764
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=9.8e-15 Score=109.15 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=69.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCce-----EEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-----ASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i-----~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
....+.++|||+|||.++++++|+++|.+||.| .+.....++|||||+|.+.++|++|++ |++..+.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 345568899999999999999999999998754 444555678999999999999999995 99999999999999
Q ss_pred eccCCCC
Q 029152 134 WGRNPAN 140 (198)
Q Consensus 134 ~a~~~~~ 140 (198)
++.+...
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9986543
No 196
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=4.8e-15 Score=109.84 Aligned_cols=74 Identities=23% Similarity=0.542 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4689999999999999999999999999999999874 58999999999999999984 678999999999886
Q ss_pred CC
Q 029152 137 NP 138 (198)
Q Consensus 137 ~~ 138 (198)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=7.6e-15 Score=118.60 Aligned_cols=78 Identities=27% Similarity=0.623 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeCC-------CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 60 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 60 ~~~~~~~lfV~~l~~~-~~e~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
.....++|||+|||.. +++++|+++|++||.|..|+|+.+ +|||||+|.+.++|.+|+ .||+..|+|+.|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 999999999999999999999653 689999999999999999 9999999999999
Q ss_pred EEeccCC
Q 029152 132 LSWGRNP 138 (198)
Q Consensus 132 v~~a~~~ 138 (198)
|.||+++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=4.5e-15 Score=114.74 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCce--EEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCceeCCe----EeE
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI--ASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQ----SVR 131 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i--~~v~i~~~----kg~afV~f~~~~~a~~a~~~l~~~~~~g~----~l~ 131 (198)
.+.++|||+|||+++++++|+++|++||.| .+++++.+ ++||||+|.+.++|.+||..||+..|++. .+.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 346789999999999999999999999999 89998875 48999999999999999999999999876 577
Q ss_pred EEec
Q 029152 132 LSWG 135 (198)
Q Consensus 132 v~~a 135 (198)
|+||
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=3.5e-14 Score=114.65 Aligned_cols=78 Identities=17% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G-~i~~v~i~~-----~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
..++|||+|||+.+++++|+++|++|| .|..|.++. +++||||+|.+.++|++|++.|++..|+|+.|.|.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999976 46999999999999999999999999999999999998
Q ss_pred CCCC
Q 029152 137 NPAN 140 (198)
Q Consensus 137 ~~~~ 140 (198)
+...
T Consensus 196 ~~~~ 199 (292)
T 2ghp_A 196 PLEK 199 (292)
T ss_dssp CC--
T ss_pred CCcc
Confidence 7543
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=7.1e-14 Score=96.82 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=65.3
Q ss_pred CCCeEEEcCCC--CCCC--------HHHHHHHhccCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhCCce
Q 029152 63 SNTTIFVGGLD--PNVT--------DEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTV 124 (198)
Q Consensus 63 ~~~~lfV~~l~--~~~~--------e~~l~~~F~~~G~i~~v~i~~~--------kg~afV~f~~~~~a~~a~~~l~~~~ 124 (198)
+++.|.+.|+- ..+. +++|++.|++||.|.+|.|+++ +||+||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 57789999973 3332 3689999999999999999763 6999999999999999999999999
Q ss_pred eCCeEeEEEeccC
Q 029152 125 IGKQSVRLSWGRN 137 (198)
Q Consensus 125 ~~g~~l~v~~a~~ 137 (198)
++|+.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999753
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=8.7e-15 Score=101.28 Aligned_cols=67 Identities=25% Similarity=0.486 Sum_probs=59.7
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEeE
Q 029152 69 VGGLDPNVTDEDLRQPF------------SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (198)
Q Consensus 69 V~~l~~~~~e~~l~~~F------------~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 131 (198)
+.+|++.+++++|+++| ++||.|.+|.|+++ +|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777888777666 99999999999874 79999999999999999999999999999999
Q ss_pred EEec
Q 029152 132 LSWG 135 (198)
Q Consensus 132 v~~a 135 (198)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=8.3e-14 Score=111.16 Aligned_cols=77 Identities=30% Similarity=0.451 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHh-CCceeC---CeEeEEE
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKL-NGTVIG---KQSVRLS 133 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~a~~a~~~l-~~~~~~---g~~l~v~ 133 (198)
+.++|||+|||..+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|++.| ++..+. ++.|.|+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 4679999999999999999999999999999999865 799999999999999999999 455554 9999999
Q ss_pred eccCCC
Q 029152 134 WGRNPA 139 (198)
Q Consensus 134 ~a~~~~ 139 (198)
++.+..
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 998654
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=3.7e-13 Score=95.11 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=65.4
Q ss_pred CCCeEEEcCCCCC--C---CHHHHHHHhccCCceEEEEEeCC----------CcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 029152 63 SNTTIFVGGLDPN--V---TDEDLRQPFSQYGEIASVKIPVG----------KGCGFVQFANRENAEEALHKLNGTVIGK 127 (198)
Q Consensus 63 ~~~~lfV~~l~~~--~---~e~~l~~~F~~~G~i~~v~i~~~----------kg~afV~f~~~~~a~~a~~~l~~~~~~g 127 (198)
++++|++.|+-.. + -+++|++.|++||.|.+|.|+++ +||+||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4788999998421 2 36899999999999999999763 3899999999999999999999999999
Q ss_pred eEeEEEeccC
Q 029152 128 QSVRLSWGRN 137 (198)
Q Consensus 128 ~~l~v~~a~~ 137 (198)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=1.5e-12 Score=91.32 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCC----------CHHHHHHHhccCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEe
Q 029152 63 SNTTIFVGGLDPNV----------TDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (198)
Q Consensus 63 ~~~~lfV~~l~~~~----------~e~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l 130 (198)
+++.|.+.|+=..- -+++|++.|++||.|.+|.|.++ +||+||+|.+.++|++|++.|||..++|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 46678888764322 13588999999999999999875 6999999999999999999999999999999
Q ss_pred EEEeccC
Q 029152 131 RLSWGRN 137 (198)
Q Consensus 131 ~v~~a~~ 137 (198)
+|+++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.9e-12 Score=89.26 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=70.4
Q ss_pred CCCCCCCCeEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC-HHHHHHHHHHhC--CceeCCeEeEEE
Q 029152 58 SEGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN-RENAEEALHKLN--GTVIGKQSVRLS 133 (198)
Q Consensus 58 ~~~~~~~~~lfV~~l~~~-~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~-~~~a~~a~~~l~--~~~~~g~~l~v~ 133 (198)
+-.....+.|||+||++. +++++|+++|++||+|..|.+..+...|||+|.+ .++|..|++.|+ +..|.+..++++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 445667899999999999 9999999999999999999999998999999999 899999999994 678889888887
Q ss_pred ec
Q 029152 134 WG 135 (198)
Q Consensus 134 ~a 135 (198)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.8e-12 Score=85.42 Aligned_cols=74 Identities=26% Similarity=0.404 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEE
Q 029152 62 SSNTTIFVGGLDP----NVTD----EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (198)
Q Consensus 62 ~~~~~lfV~~l~~----~~~e----~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 133 (198)
++..||+|.-.+. ++-. .+|.+.|++||+|..++++.++ +||+|.+.++|.+|++ |||..++|+.|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 3466788876652 2322 5789999999999999999876 8999999999999998 99999999999999
Q ss_pred eccCC
Q 029152 134 WGRNP 138 (198)
Q Consensus 134 ~a~~~ 138 (198)
++++.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 99863
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=6.1e-11 Score=79.37 Aligned_cols=72 Identities=26% Similarity=0.439 Sum_probs=61.9
Q ss_pred CCCCeEEEcCCCCC------CCH---HHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEE
Q 029152 62 SSNTTIFVGGLDPN------VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (198)
Q Consensus 62 ~~~~~lfV~~l~~~------~~e---~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 132 (198)
++..||+|.-++.. ..+ .+|.+.|.+||+|..++++.++ +||+|.+.++|.+||+ |++..++|+.|+|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 45678999887643 222 4688999999999999999887 9999999999999998 9999999999999
Q ss_pred Eecc
Q 029152 133 SWGR 136 (198)
Q Consensus 133 ~~a~ 136 (198)
++..
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 9754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=2.3e-09 Score=83.24 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=55.5
Q ss_pred CHHHHHHHhccCCceEEEEEe----------CCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 77 TDEDLRQPFSQYGEIASVKIP----------VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 77 ~e~~l~~~F~~~G~i~~v~i~----------~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
.+++|++.|++||.|.++.|+ +.+|++||+|.+.++|.+|++.|||..++|+.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 467899999999999999997 346999999999999999999999999999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.9e-08 Score=67.19 Aligned_cols=73 Identities=18% Similarity=0.138 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC-----CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEec
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~-----G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 135 (198)
+.++|-+-+||+.++...|+.+.+++ |.|+.|.+..+.+-|+|+|.|...|-+|.-.|+|.+|+|+.|++.-.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 46789999999999999999999999 99999999999999999999999999998889999999999998743
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.3e-05 Score=54.14 Aligned_cols=74 Identities=24% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-C----CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQ-Y----GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~-~----G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
....+|.|.|||+.++++.|+-+|++ - |+|..++... +-|+|+|.+.+.|++.|+. ..+.|++..|.|....
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 34679999999999999999999987 2 6899998876 7899999999999999873 4788999999998765
Q ss_pred CC
Q 029152 137 NP 138 (198)
Q Consensus 137 ~~ 138 (198)
+.
T Consensus 83 ~~ 84 (104)
T 2dhx_A 83 PR 84 (104)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=6.3e-06 Score=55.92 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 029152 64 NTTIFVGGLDPNV-T----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 64 ~~~lfV~~l~~~~-~----e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 138 (198)
.++|+|.||+.++ . .+.++++|..|+++......++-.-..|.|.+.++|.+|...||+..+.|++|+|-++.+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 5679999998864 2 2578999999999999999998778899999999999999999999999999999999843
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=8.5e-05 Score=51.69 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCC-eEeEEEecc
Q 029152 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-QSVRLSWGR 136 (198)
Q Consensus 59 ~~~~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~a~ 136 (198)
+...+.+.|-|-++|+.. .+.|.++|++||.|.+........+-.|.|+++.+|++||. .|+..|++ ..|-|....
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 445557889999999985 56788899999999998886567999999999999999998 59999985 667777743
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.62 E-value=0.00051 Score=45.57 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=57.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhCCceeC---Ce--EeE
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIG---KQ--SVR 131 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~--------kg~afV~f~~~~~a~~a~~~l~~~~~~---g~--~l~ 131 (198)
++|-|++||+.+||+++.+.++...++........ -.-|+|.|.+.+++..-.+.++|+.+- |. .-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57999999999999999999998877666555331 267999999999999999999999873 22 335
Q ss_pred EEeccC
Q 029152 132 LSWGRN 137 (198)
Q Consensus 132 v~~a~~ 137 (198)
|++|--
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.57 E-value=0.00037 Score=46.54 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=45.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHh
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l 120 (198)
..+.++| ++|.++...||.++|+.||.| .|+++.+ .-|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-TEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-CeEEEEecCHHHHHHHHHhc
Confidence 4556666 999999999999999999843 3555544 68999999999999999865
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.26 E-value=0.00038 Score=46.61 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 121 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~ 121 (198)
.+.++| ++|.++...||.++|+.||. ..|+++.+ .-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 345566 99999999999999999993 45666655 689999999999999998764
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.23 E-value=0.00048 Score=48.58 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=55.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCceEE-EEEeC-------------------CCcEEEEEeCCHHHHHHHHHHhCC
Q 029152 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV-------------------GKGCGFVQFANRENAEEALHKLNG 122 (198)
Q Consensus 63 ~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~-v~i~~-------------------~kg~afV~f~~~~~a~~a~~~l~~ 122 (198)
....|.|-+.|+..+ ..+-+.|++||.|.+ +.+.+ ...+--|+|+++.+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 356788889987755 567778999999877 22211 25788999999999999998 599
Q ss_pred ceeCCeEeEEEecc
Q 029152 123 TVIGKQSVRLSWGR 136 (198)
Q Consensus 123 ~~~~g~~l~v~~a~ 136 (198)
..|+|..|-|.+.+
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988888764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.07 E-value=0.00032 Score=59.93 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCc-EEEEEeCCHHHHHHHHH
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALH 118 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg-~afV~f~~~~~a~~a~~ 118 (198)
++|||. .+..+++++|.++|++||.|.++.+-.++| |+.|||.+.+++.+++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 789997 789999999999999999999999988765 89999999999987764
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.98 E-value=0.0026 Score=42.48 Aligned_cols=73 Identities=11% Similarity=0.224 Sum_probs=53.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhCCceeCC---e--Ee
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIGK---Q--SV 130 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~--------kg~afV~f~~~~~a~~a~~~l~~~~~~g---~--~l 130 (198)
+-+|-|+.||+.+||+++.+.++..=++........ -.-|+|.|.+.+++..-.+..+|+.+-+ . .-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457999999999999998888876544322222111 2678999999999999999999998732 2 34
Q ss_pred EEEecc
Q 029152 131 RLSWGR 136 (198)
Q Consensus 131 ~v~~a~ 136 (198)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566664
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.52 E-value=0.0043 Score=44.46 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=35.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHh-CCceeCCeEeEEEeccCC
Q 029152 100 KGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGRNP 138 (198)
Q Consensus 100 kg~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a~~~ 138 (198)
+|+++|+|.+.++|++|++.+ |+..++| .|.+.++...
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 699999999999999999999 9999999 9999988753
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.46 E-value=0.021 Score=41.02 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCc
Q 029152 99 GKGCGFVQFANRENAEEALHKLNGT 123 (198)
Q Consensus 99 ~kg~afV~f~~~~~a~~a~~~l~~~ 123 (198)
.+||+||+|.+.++|++|++.+++.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhccc
Confidence 4799999999999999999887653
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.26 E-value=0.34 Score=41.84 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 121 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~ 121 (198)
...++|+ +|..+...+|.++|+.||.| +|+++ +...|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 4566666 88899999999999999954 55555 44689999999999999998874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.07 E-value=1.3 Score=27.40 Aligned_cols=68 Identities=12% Similarity=0.315 Sum_probs=43.1
Q ss_pred eEEEcC-CCCCCCHHHHHHHhccCC-----ceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 029152 66 TIFVGG-LDPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (198)
Q Consensus 66 ~lfV~~-l~~~~~e~~l~~~F~~~G-----~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 136 (198)
++||.. --..++..+|..++..-+ .|-.|++. ..|.||+-.. +.++.+++.|+...+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 456632 223466677777776433 45666664 3689999875 56788999999999999999998764
No 223
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=65.45 E-value=15 Score=21.65 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHH
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK 119 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~ 119 (198)
..++.|.++.=.--...|++.+.+ ..|..+.+....+-+.|+|.+.+....+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 356888888777678899999999 8899998877778888998866666677764
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.60 E-value=2.6 Score=30.02 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=18.6
Q ss_pred HHHHHHhccCCceEEEEEeCCCcEEEEEeC
Q 029152 79 EDLRQPFSQYGEIASVKIPVGKGCGFVQFA 108 (198)
Q Consensus 79 ~~l~~~F~~~G~i~~v~i~~~kg~afV~f~ 108 (198)
+++.++|...|.|+.... .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--CCCeeEEeeC
Confidence 466677888888776543 6899999976
No 225
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=50.36 E-value=29 Score=19.84 Aligned_cols=54 Identities=9% Similarity=0.230 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC---HHHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---RENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~---~~~a~~a~~~ 119 (198)
++.|.++.-.--...|++.+.+...|..+.+....+-+.|+|.+ .+...++++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 56777776665678899999998889999888888888898843 3445555553
No 226
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.81 E-value=53 Score=20.78 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=38.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeC-CHHHHHHHHHH
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA-NRENAEEALHK 119 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~-~~~~a~~a~~~ 119 (198)
.++.|. +.=.--...|++.+.+.-.|..+.+....+-+.|++. +.+...++|+.
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHH
Confidence 356665 5433345789999999888889988887888888885 44555666654
No 227
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=44.27 E-value=45 Score=19.28 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=41.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeC----CHHHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~----~~~~a~~a~~~ 119 (198)
++.|.++.-.--...|++.+.+...|..+.+....+-+.|+|. +.+....+++.
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777665566789999998888888888777788899985 45666667664
No 228
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.54 E-value=70 Score=20.33 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=36.1
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-ceEEEEEeC-CCc--EEEEEeCCHHHHHHHHHH
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV-GKG--CGFVQFANRENAEEALHK 119 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~-~G-~i~~v~i~~-~kg--~afV~f~~~~~a~~a~~~ 119 (198)
.|+--+....+..+|++.+++ |+ .|..|..+. .++ -|+|+...-.+|.....+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 344446678899999988876 66 677775433 333 599999877776665443
No 229
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=34.53 E-value=72 Score=23.72 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=28.6
Q ss_pred eEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCceeC
Q 029152 91 IASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIG 126 (198)
Q Consensus 91 i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~~~ 126 (198)
|.+|....+ |||-|||=.+...+..||+.+......
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 666655443 899999999999999999988776544
No 230
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=32.40 E-value=64 Score=17.55 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=37.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeC---CHHHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA---NRENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~---~~~~a~~a~~~ 119 (198)
++.|.++.-......|++.+.+...|..+.+....+...|+|. +.+...++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 3556666544456788899988877888888887888889886 34444555554
No 231
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.99 E-value=80 Score=20.84 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=27.7
Q ss_pred ceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCce
Q 029152 90 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV 124 (198)
Q Consensus 90 ~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~~ 124 (198)
.|.++....+ +||-|||=.+..++..|++.+....
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4777766554 8999999999999999998775543
No 232
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=30.95 E-value=79 Score=18.18 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHHh
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 120 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~l 120 (198)
..++.|.++.-......|++.+.....|..+.+....+.+.|+|.. .+....+++.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3467888887777778899999888778778777777888898864 34555666543
No 233
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=30.22 E-value=1.1e+02 Score=19.44 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=31.6
Q ss_pred CHHHHHHHhcc----CC-ceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCc
Q 029152 77 TDEDLRQPFSQ----YG-EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGT 123 (198)
Q Consensus 77 ~e~~l~~~F~~----~G-~i~~v~i~~~-kg~afV~f~~~~~a~~a~~~l~~~ 123 (198)
.|..+.+.+.+ -+ +|.++.+... .||.||++...++...+++.+.+.
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 45544444432 22 3666666542 699999999998888888877654
No 234
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=30.08 E-value=1.1e+02 Score=19.67 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=44.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHh
Q 029152 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120 (198)
Q Consensus 62 ~~~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~~l 120 (198)
...+-+-|-|+|..+-..++.-.....|---.+..+ .|-|.|.|.+.++..-|+.+|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHH
Confidence 346777888999998888777666666655555554 488999999999999999877
No 235
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=29.76 E-value=97 Score=18.83 Aligned_cols=55 Identities=13% Similarity=0.293 Sum_probs=40.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHHh
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 120 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~l 120 (198)
++.|.++.-......|++.+.+.-.|..+.+....+-+.|+|.. .+...++++.+
T Consensus 6 ~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 6 TFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 56677765444557789999988889999988888899999863 35556666644
No 236
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=28.61 E-value=79 Score=17.45 Aligned_cols=54 Identities=7% Similarity=0.209 Sum_probs=37.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCH---HHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANR---ENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~---~~a~~a~~~ 119 (198)
++.|.++.-......|++.+.+...|..+.+....+.+.|+|... +....+++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 566777755445677889998888888998888888899998743 334444543
No 237
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=27.97 E-value=97 Score=18.28 Aligned_cols=57 Identities=7% Similarity=0.200 Sum_probs=42.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeC----CHHHHHHHHHHh
Q 029152 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHKL 120 (198)
Q Consensus 64 ~~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~----~~~~a~~a~~~l 120 (198)
..++.|.++.-......|++.+.+...|..+.+....+-+.|+|. +.+....+++.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346788888766666789999998888999988877888999986 345556666543
No 238
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=26.51 E-value=85 Score=17.11 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=39.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~ 119 (198)
++.|.++.-......|++.+.+...|..+.+....+.+.|+|.. .+....+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56777876666677899999988778888888878888999863 3444555543
No 239
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=26.08 E-value=1.4e+02 Score=19.57 Aligned_cols=56 Identities=7% Similarity=0.229 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeC----CHHHHHHHHHHh
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHKL 120 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~----~~~~a~~a~~~l 120 (198)
.++.|.++.-..-...|++.+.+.-.|..+.+....+.+.|+|. +.+...++++.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhC
Confidence 46778888665556788999988878888888887888999986 345566666654
No 240
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=25.65 E-value=93 Score=17.24 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=38.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHHh
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 120 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~l 120 (198)
++.|.++.-......|+..+.+...|..+.+....+-+.|+|.. .+....+++.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 46676765444456788888888778888887777888999863 34555566543
No 241
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=24.72 E-value=97 Score=17.15 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~ 119 (198)
++.|.++.-......|++.+.....|..+.+....+.+.|+|.. .+....+++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHh
Confidence 46677776665667899999988888888888878888998863 4455556654
No 242
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.57 E-value=56 Score=25.29 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=24.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEE
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 96 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i 96 (198)
..+.|+|||++++...|.+++.. ..+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 45789999999999999999987 55554433
No 243
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=24.50 E-value=98 Score=17.12 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=38.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~ 119 (198)
++.|.++.-......|+..+.+.-.|..+.+....+-+.|+|.. .+....+++.
T Consensus 8 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 8 TLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 57777775544556788889888778888888877888888863 3445555554
No 244
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=23.84 E-value=1.1e+02 Score=17.44 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHHh
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 120 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~l 120 (198)
++.|.++.-......|++.+.+...|..+.+....+-+.|+|.. .+....+++.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 56777776665667899999988788888887777888898863 34555666543
No 245
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=22.79 E-value=1.7e+02 Score=19.30 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=43.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeC----CHHHHHHHHHHh
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHKL 120 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~----~~~~a~~a~~~l 120 (198)
.++.|.++.-......|++.+.+.-.|..+.+....+.+.|+|. +.+...++++.+
T Consensus 76 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 76 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788888777777889999999888888888777788999986 455666666654
No 246
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=22.16 E-value=1.1e+02 Score=16.82 Aligned_cols=53 Identities=9% Similarity=0.200 Sum_probs=38.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC---HHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---RENAEEALH 118 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~---~~~a~~a~~ 118 (198)
++.|.++.-......|++.+.+.-.|..+.+....+.+.|+|.. .+....+++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 58 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVA 58 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHH
Confidence 46677776555567888999888788888888888888888874 344445554
No 247
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.65 E-value=90 Score=18.84 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=13.9
Q ss_pred CceEEEEEeCCCcEEEEEeCC
Q 029152 89 GEIASVKIPVGKGCGFVQFAN 109 (198)
Q Consensus 89 G~i~~v~i~~~kg~afV~f~~ 109 (198)
|.|++|. ..+..|||.|+|
T Consensus 28 GtV~kV~--~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVD--SAREVCLVQFED 46 (68)
T ss_dssp EEEEEEE--TTTTEEEEEETT
T ss_pred eEEEEEe--cCCcEEEEEEcc
Confidence 5665554 457899999986
No 248
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=21.62 E-value=83 Score=19.93 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=32.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-ceEEEEEeC-CC--cEEEEEeCCHHHHHH
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV-GK--GCGFVQFANRENAEE 115 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~-~G-~i~~v~i~~-~k--g~afV~f~~~~~a~~ 115 (198)
-|+-.+....+..+|++.+++ |+ +|..|.... .+ --|+|+...-++|..
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid 77 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQE 77 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHH
Confidence 344456778899999988876 66 677775433 33 358999976555433
No 249
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=21.55 E-value=1.6e+02 Score=18.66 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHH
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 119 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~ 119 (198)
.++.|.++.-......|++.+...-.|..+.+....+.+.|+|.. .+....+++.
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~ 68 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 68 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 357788887666778899999998789999988888899999974 3445555654
No 250
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.21 E-value=31 Score=26.94 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=25.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCceEEEEEe
Q 029152 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP 97 (198)
Q Consensus 65 ~~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~ 97 (198)
..+.|+|||+.++...|.+++..-..+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 357899999999999999999765555554443
No 251
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=21.11 E-value=1.2e+02 Score=16.99 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=39.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCC----HHHHHHHHHH
Q 029152 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 119 (198)
Q Consensus 66 ~lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~----~~~a~~a~~~ 119 (198)
++.|.++.-......|++.+...-.|..+.+....+.+.|+|.. .+....+++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDD 62 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46677765544557788999888888888888888889999863 4555566654
No 252
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=20.32 E-value=95 Score=17.20 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=33.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceEEEEEeCCCcEEEEEeCCHHHHHHHHH
Q 029152 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 118 (198)
Q Consensus 67 lfV~~l~~~~~e~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~a~~a~~ 118 (198)
+.|.++.-..-...+++.+.+. .|..+.+....+.+.|++...+....+++
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 5 LYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHH
T ss_pred EEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 4455544333346678888777 78888887777888898886533334444
Done!