Your job contains 1 sequence.
>029155
MVVKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRP
TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRAT
EIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAESTAGGTMVPISWTEM
QCPLTGQTEQRKVAKVGT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029155
(198 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2152297 - symbol:AT5G38890 species:3702 "Arabi... 757 4.5e-75 1
UNIPROTKB|G4ML19 - symbol:MGG_08628 "3'-5' exoribonucleas... 323 2.2e-36 2
ZFIN|ZDB-GENE-080926-3 - symbol:exosc1 "exosome component... 384 1.5e-35 1
UNIPROTKB|Q5E9E9 - symbol:EXOSC1 "Uncharacterized protein... 371 3.6e-34 1
UNIPROTKB|Q9Y3B2 - symbol:EXOSC1 "Exosome complex compone... 371 3.6e-34 1
UNIPROTKB|E2RT56 - symbol:EXOSC1 "Uncharacterized protein... 370 4.6e-34 1
MGI|MGI:1913833 - symbol:Exosc1 "exosome component 1" spe... 370 4.6e-34 1
UNIPROTKB|F1S8Y4 - symbol:EXOSC1 "Uncharacterized protein... 360 5.2e-33 1
ASPGD|ASPL0000007077 - symbol:AN11250 species:162425 "Eme... 259 6.0e-33 3
UNIPROTKB|B1AMU3 - symbol:EXOSC1 "Exosome complex compone... 309 8.8e-32 2
FB|FBgn0032346 - symbol:Csl4 "Csl4" species:7227 "Drosoph... 316 2.4e-28 1
POMBASE|SPCC1840.11 - symbol:csl4 "exosome subunit Csl4 (... 315 3.1e-28 1
UNIPROTKB|F1P3Y1 - symbol:EXOSC1 "Uncharacterized protein... 312 6.4e-28 1
SGD|S000005176 - symbol:CSL4 "Exosome non-catalytic core ... 250 4.0e-26 2
DICTYBASE|DDB_G0285377 - symbol:DDB_G0285377 "3'-5' exori... 247 4.9e-21 1
CGD|CAL0001085 - symbol:orf19.1026 species:5476 "Candida ... 213 1.6e-20 2
UNIPROTKB|Q59VR7 - symbol:CSL4 "Likely exosome component ... 213 1.6e-20 2
UNIPROTKB|B1AMU4 - symbol:EXOSC1 "Exosome complex compone... 242 1.7e-20 1
UNIPROTKB|B1AMU7 - symbol:EXOSC1 "Exosome complex compone... 233 1.5e-19 1
WB|WBGene00012966 - symbol:exos-1 species:6239 "Caenorhab... 211 3.2e-17 1
GENEDB_PFALCIPARUM|MAL7P1.104 - symbol:MAL7P1.104 "3'-5' ... 183 3.0e-14 1
UNIPROTKB|Q8IBQ2 - symbol:MAL7P1.104 "3'-5' exoribonuclea... 183 3.0e-14 1
>TAIR|locus:2152297 [details] [associations]
symbol:AT5G38890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
InterPro:IPR003029 InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG1096
HOGENOM:HOG000177330 KO:K07573 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 OMA:RAYYLST EMBL:BT030080
EMBL:AK316921 IPI:IPI00532795 RefSeq:NP_568559.2 UniGene:At.30376
ProteinModelPortal:A2RVT9 SMR:A2RVT9 IntAct:A2RVT9 STRING:A2RVT9
PaxDb:A2RVT9 PRIDE:A2RVT9 DNASU:833880 EnsemblPlants:AT5G38890.1
GeneID:833880 KEGG:ath:AT5G38890 TAIR:At5g38890 InParanoid:A2RVT9
PhylomeDB:A2RVT9 ProtClustDB:CLSN2681079 Genevestigator:A2RVT9
Uniprot:A2RVT9
Length = 191
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 149/188 (79%), Positives = 167/188 (88%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LVTPG+V+GKATE KAGKGAYV ++ +YASLTG R +SP P+S DQR VEVTGHKA
Sbjct: 5 LVTPGDVIGKATEFKAGKGAYV--NDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKA 62
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHL 129
HGP+PE GSVVIARVTKVMT+MA+ DI+CVG+K+VRE F+G+IRQQDVRATEIDKVDMH
Sbjct: 63 HGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDMHQ 122
Query: 130 SFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTE 189
SF GDIVRA VLSLGDARAY+LSTAKN+LGVVSAES AG TMVPISWTEMQCPL+GQTE
Sbjct: 123 SFHAGDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQTE 182
Query: 190 QRKVAKVG 197
QRKVAKVG
Sbjct: 183 QRKVAKVG 190
>UNIPROTKB|G4ML19 [details] [associations]
symbol:MGG_08628 "3'-5' exoribonuclease CSL4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0009405 "pathogenesis"
evidence=IMP] InterPro:IPR019495 Pfam:PF10447 GO:GO:0009405
GO:GO:0003723 GO:GO:0000178 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:CM001231 KO:K07573 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 RefSeq:XP_003711058.1
ProteinModelPortal:G4ML19 EnsemblFungi:MGG_08628T0 GeneID:2678864
KEGG:mgr:MGG_08628 Uniprot:G4ML19
Length = 213
Score = 323 (118.8 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 69/137 (50%), Positives = 91/137 (66%)
Query: 60 PTVEVTGHK-AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVR 118
PT+ V + A +PE G VV+ RVT+V + A I+ VG + ++ G+IR +DVR
Sbjct: 76 PTISVQRRRRAAAALPEVGDVVLCRVTRVSHQQAIVAILVVGDAVLDAEWQGVIRVRDVR 135
Query: 119 ATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAESTAGGTMVPISWT 178
ATE D+V + SFRPGDIVRA V+SLGD Y+L+TA N+LGV+ A S AG M P+SW
Sbjct: 136 ATEKDRVKIGESFRPGDIVRAQVISLGDQANYYLTTASNELGVIMANSDAGNPMYPVSWK 195
Query: 179 EMQCPLTGQTEQRKVAK 195
E + P TG +E RKVAK
Sbjct: 196 EYKDPETGLSEPRKVAK 212
Score = 85 (35.0 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQRP 60
L PG++LG ++ +AG G ++ H +Y+SL G + P P P +RP
Sbjct: 9 LALPGQLLGPSSRYRAGPGTHI--HEANLYSSLLGAVSITQPAKPAGPTKRP 58
>ZFIN|ZDB-GENE-080926-3 [details] [associations]
symbol:exosc1 "exosome component 1" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR019495 Pfam:PF10447
ZFIN:ZDB-GENE-080926-3 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG1096
HOGENOM:HOG000177330 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 CTD:51013 HOVERGEN:HBG051516
OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721 Pfam:PF14382
EMBL:BX119918 IPI:IPI00512843 RefSeq:NP_001139039.1
UniGene:Dr.53954 Ensembl:ENSDART00000083633 GeneID:558857
NextBio:20882664 Uniprot:B8A4H5
Length = 194
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 86/191 (45%), Positives = 120/191 (62%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG-LLRTLSPPPDSPDQRPTVEVTG 66
M L PGE L + G G Y+ +H G ++ASL G +LR + ++ P + V
Sbjct: 4 MKLCVPGERLCSTEDCIPGTGTYL-RH-GYIFASLAGYVLRK-----NEGEELPVISVVR 56
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVD 126
+P+ G++V +VT + R A I+ VG+ ++++F G IR++DVRATE DKV+
Sbjct: 57 ETEAQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRREDVRATEKDKVE 116
Query: 127 MHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLT 185
+ SFRPGDIV A V+SLGD ++ Y L+TA+N+LGVV A S AG MVP+SW EMQCP T
Sbjct: 117 TYKSFRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPVSWCEMQCPRT 176
Query: 186 GQTEQRKVAKV 196
E RKVA+V
Sbjct: 177 HSKEFRKVARV 187
>UNIPROTKB|Q5E9E9 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 eggNOG:COG1096 HOGENOM:HOG000177330
KO:K07573 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 CTD:51013 HOVERGEN:HBG051516
OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721 Pfam:PF14382
EMBL:DAAA02058916 EMBL:BC133440 EMBL:BT020971 IPI:IPI00703481
RefSeq:NP_001015529.1 UniGene:Bt.28578 SMR:Q5E9E9 STRING:Q5E9E9
Ensembl:ENSBTAT00000016879 GeneID:506018 KEGG:bta:506018
InParanoid:Q5E9E9 NextBio:20867414 Uniprot:Q5E9E9
Length = 195
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 84/185 (45%), Positives = 114/185 (61%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLTKTS----ENGALPVISVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFR 132
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR++DVRATE DKV+++ SFR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYKSFR 123
Query: 133 PGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQR 191
PGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T E R
Sbjct: 124 PGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFR 183
Query: 192 KVAKV 196
KVA+V
Sbjct: 184 KVARV 188
>UNIPROTKB|Q9Y3B2 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000178 "exosome (RNase complex)" evidence=IDA;NAS] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126 GO:GO:0005829
GO:GO:0010467 GO:GO:0005730 EMBL:CH471066 GO:GO:0003723
GO:GO:0000178 GO:GO:0006364 eggNOG:COG1096 HOGENOM:HOG000177330
KO:K07573 InterPro:IPR022967 SMART:SM00316 GO:GO:0043928
EMBL:AF151866 EMBL:AK313717 EMBL:AL355490 EMBL:BC022067
IPI:IPI00032823 RefSeq:NP_057130.1 UniGene:Hs.632089 PDB:2NN6
PDBsum:2NN6 ProteinModelPortal:Q9Y3B2 SMR:Q9Y3B2 IntAct:Q9Y3B2
STRING:Q9Y3B2 PhosphoSite:Q9Y3B2 DMDM:14285410 PaxDb:Q9Y3B2
PRIDE:Q9Y3B2 DNASU:51013 Ensembl:ENST00000370902 GeneID:51013
KEGG:hsa:51013 UCSC:uc001kni.3 CTD:51013 GeneCards:GC10M099191
HGNC:HGNC:17286 HPA:HPA038370 MIM:606493 neXtProt:NX_Q9Y3B2
PharmGKB:PA134900737 HOVERGEN:HBG051516 InParanoid:Q9Y3B2
OMA:AGCLTKS OrthoDB:EOG40ZQZP PhylomeDB:Q9Y3B2
EvolutionaryTrace:Q9Y3B2 GenomeRNAi:51013 NextBio:53508
ArrayExpress:Q9Y3B2 Bgee:Q9Y3B2 CleanEx:HS_EXOSC1
Genevestigator:Q9Y3B2 GermOnline:ENSG00000171311 InterPro:IPR025721
Pfam:PF14382 Uniprot:Q9Y3B2
Length = 195
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 85/185 (45%), Positives = 114/185 (61%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFR 132
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR++DVRATE DKV+++ SFR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFR 123
Query: 133 PGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQR 191
PGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T E R
Sbjct: 124 PGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFR 183
Query: 192 KVAKV 196
KVA+V
Sbjct: 184 KVARV 188
>UNIPROTKB|E2RT56 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 OMA:AGCLTKS
InterPro:IPR025721 Pfam:PF14382 EMBL:AAEX03015445
Ensembl:ENSCAFT00000014417 Uniprot:E2RT56
Length = 207
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 84/185 (45%), Positives = 114/185 (61%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P + V
Sbjct: 22 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLTKSS----ENGALPVISVMRETESQL 75
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFR 132
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR++DVRATE DKV+++ SFR
Sbjct: 76 LPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYKSFR 135
Query: 133 PGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQR 191
PGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T E R
Sbjct: 136 PGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFR 195
Query: 192 KVAKV 196
KVA+V
Sbjct: 196 KVARV 200
>MGI|MGI:1913833 [details] [associations]
symbol:Exosc1 "exosome component 1" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=ISO] InterPro:IPR019495
Pfam:PF10447 PROSITE:PS50126 MGI:MGI:1913833 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0006364
eggNOG:COG1096 HOGENOM:HOG000177330 KO:K07573 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 CTD:51013
HOVERGEN:HBG051516 OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721
Pfam:PF14382 EMBL:AK002930 EMBL:AK006018 EMBL:BC024423
IPI:IPI00118360 IPI:IPI00283868 RefSeq:NP_001158033.1
RefSeq:NP_079920.1 UniGene:Mm.289086 ProteinModelPortal:Q9DAA6
SMR:Q9DAA6 STRING:Q9DAA6 PhosphoSite:Q9DAA6 PaxDb:Q9DAA6
PRIDE:Q9DAA6 DNASU:66583 Ensembl:ENSMUST00000075280
Ensembl:ENSMUST00000112123 GeneID:66583 KEGG:mmu:66583
UCSC:uc008hmm.2 UCSC:uc008hmn.2 InParanoid:Q9DAA6 NextBio:322064
Bgee:Q9DAA6 CleanEx:MM_EXOSC1 Genevestigator:Q9DAA6
GermOnline:ENSMUSG00000034321 Uniprot:Q9DAA6
Length = 195
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 85/185 (45%), Positives = 114/185 (61%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLMKTS----ENGAVPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFR 132
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR++D+RATE DKV+++ SFR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSFR 123
Query: 133 PGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQR 191
PGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T E R
Sbjct: 124 PGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFR 183
Query: 192 KVAKV 196
KVA+V
Sbjct: 184 KVARV 188
>UNIPROTKB|F1S8Y4 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 OMA:AGCLTKS InterPro:IPR025721
Pfam:PF14382 EMBL:CU407093 Ensembl:ENSSSCT00000011508
Uniprot:F1S8Y4
Length = 196
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 84/186 (45%), Positives = 114/186 (61%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLTKSS----ENGALPVISVMRETDSQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQ-QDVRATEIDKVDMHLSF 131
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR+ +DVRATE DKV+++ SF
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRRKEDVRATEKDKVEIYKSF 123
Query: 132 RPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQ 190
RPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T E
Sbjct: 124 RPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEF 183
Query: 191 RKVAKV 196
RKVA+V
Sbjct: 184 RKVARV 189
>ASPGD|ASPL0000007077 [details] [associations]
symbol:AN11250 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=IEA] [GO:0000176 "nuclear exosome
(RNase complex)" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0070481 "nuclear-transcribed
mRNA catabolic process, non-stop decay" evidence=IEA] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0003723 EMBL:BN001301
GO:GO:0000178 HOGENOM:HOG000177330 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 EnsemblFungi:CADANIAT00007710
OMA:GPGTHIH Uniprot:C8V2Y5
Length = 246
Score = 259 (96.2 bits), Expect = 6.0e-33, Sum P(3) = 6.0e-33
Identities = 50/89 (56%), Positives = 66/89 (74%)
Query: 107 KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAES 166
+F +IR++DVRA E D+V + FR GDIVR +V+SLGD Y+++TA+NDLGVV A S
Sbjct: 156 RFQALIRKEDVRAVEKDRVVLDEMFRVGDIVRGTVISLGDQSYYYITTARNDLGVVMARS 215
Query: 167 TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195
AG M P+SW EM+ P+TG EQRKVA+
Sbjct: 216 EAGNMMFPVSWKEMRDPVTGAAEQRKVAR 244
Score = 65 (27.9 bits), Expect = 6.0e-33, Sum P(3) = 6.0e-33
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSP 56
L PG+ LG A AG G +V ++ +YAS+ G + S +SP
Sbjct: 8 LAIPGQRLGPAGTYSAGPGTHV--YHSHIYASIAGPVSVDSAQVNSP 52
Score = 61 (26.5 bits), Expect = 6.0e-33, Sum P(3) = 6.0e-33
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCV 99
+ +P SVV+ARVT+V R A+ I+ V
Sbjct: 85 YNTLPAVDSVVLARVTRVQKRQATVSILVV 114
>UNIPROTKB|B1AMU3 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR019495
Pfam:PF10447 GO:GO:0003723 GO:GO:0000178 HOGENOM:HOG000177330
InterPro:IPR022967 SMART:SM00316 EMBL:AL355490 UniGene:Hs.632089
HGNC:HGNC:17286 HOVERGEN:HBG051516 InterPro:IPR025721 Pfam:PF14382
IPI:IPI00552556 SMR:B1AMU3 Ensembl:ENST00000370885 Uniprot:B1AMU3
Length = 170
Score = 309 (113.8 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 64/114 (56%), Positives = 84/114 (73%)
Query: 84 VTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLS 143
V+ + +R A I+ VG+ ++ F G IR++DVRATE DKV+++ SFRPGDIV A V+S
Sbjct: 50 VSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVIS 109
Query: 144 LGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQRKVAKV 196
LGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T E RKVA+V
Sbjct: 110 LGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARV 163
Score = 55 (24.4 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLL 46
PGE L E G G Y +H G +++SL G L
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCL 41
>FB|FBgn0032346 [details] [associations]
symbol:Csl4 "Csl4" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0010468 "regulation of gene expression" evidence=IMP]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0005737 EMBL:AE014134
GO:GO:0003723 GO:GO:0016787 GO:GO:0010468 GO:GO:0035327
GO:GO:0000176 eggNOG:COG1096 KO:K07573 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 OMA:AGCLTKS
InterPro:IPR025721 Pfam:PF14382 EMBL:AY095082 RefSeq:NP_609492.1
UniGene:Dm.7278 SMR:Q9VKJ4 IntAct:Q9VKJ4 MINT:MINT-905337
STRING:Q9VKJ4 EnsemblMetazoa:FBtr0080226 GeneID:34548
KEGG:dme:Dmel_CG6249 UCSC:CG6249-RA CTD:34548 FlyBase:FBgn0032346
InParanoid:Q9VKJ4 OrthoDB:EOG4QZ632 GenomeRNAi:34548 NextBio:789009
Uniprot:Q9VKJ4
Length = 204
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 77/201 (38%), Positives = 116/201 (57%)
Query: 1 MVVKEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
M +++E V+ PGE L + + + G G Y + NG +YAS +G++ DS D+
Sbjct: 1 MSEQQDETVVCLPGERLCRTEDSIVLGIGTY--EQNGYIYASKSGIVNI----EDSGDKC 54
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRA 119
V V H +P G VV ARV + A I CV + + G++R++DVR
Sbjct: 55 QVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRE 114
Query: 120 TEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST----AGGTMVPI 175
TE D+VD++ SFRPGD++ A V++ + +++ L+TA+N+LGVV A ++ MVP+
Sbjct: 115 TEKDRVDIYKSFRPGDVILARVINQLE-QSFLLTTAENELGVVIAYASDYRKTRVPMVPV 173
Query: 176 SWTEMQCPLTGQTEQRKVAKV 196
W+EMQCP T E RKVAKV
Sbjct: 174 GWSEMQCPQTTIKEPRKVAKV 194
>POMBASE|SPCC1840.11 [details] [associations]
symbol:csl4 "exosome subunit Csl4 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR003029 InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126
PomBase:SPCC1840.11 GO:GO:0005829 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071035 GO:GO:0071038
GO:GO:0000176 GO:GO:0000175 PIR:T41179 PIR:T41654
RefSeq:NP_588510.1 ProteinModelPortal:O59821 STRING:O59821
EnsemblFungi:SPCC1840.11.1 GeneID:2539351 KEGG:spo:SPCC1840.11
eggNOG:COG1096 HOGENOM:HOG000177330 KO:K07573 OMA:KIGDCFR
OrthoDB:EOG4CZFRH NextBio:20800516 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
InterPro:IPR022967 SMART:SM00316 Uniprot:O59821
Length = 181
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 77/189 (40%), Positives = 110/189 (58%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
M LV PG+V+ + A G K + ++ TG+ P +S VE T
Sbjct: 1 MNLVLPGQVVARG----APNGEGTVKRGDYIISTRTGIF---DPEKNSVTYPRKVEETA- 52
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDM 127
+P GS+V+ARV+++ R A+ +I V +++F G+I QD+RATE +KV +
Sbjct: 53 ----VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKV 108
Query: 128 HLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST-AGGTMVPISWTEMQCPLTG 186
SFRPGDIVRA V+SLGD +YFL+TA+NDLGV+ A+S+ G M P+ + MQ +G
Sbjct: 109 QNSFRPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SG 167
Query: 187 QTEQRKVAK 195
TE RK AK
Sbjct: 168 YTEMRKCAK 176
>UNIPROTKB|F1P3Y1 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 GeneTree:ENSGT00390000015287
EMBL:AADN02046446 IPI:IPI00683120 Ensembl:ENSGALT00000033237
OMA:THTKDFR Uniprot:F1P3Y1
Length = 130
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 64/115 (55%), Positives = 85/115 (73%)
Query: 83 RVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVL 142
+V + +R A +I+ VG+ ++ F G IR++D+RATE DKV+++ SFRPGDIV A V+
Sbjct: 9 QVCSINSRFAKVNILYVGSTPLKSTFRGTIRREDIRATEKDKVEVYKSFRPGDIVLAKVI 68
Query: 143 SLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQRKVAKV 196
SLGDA++ Y LSTA+N+LGVV A S AG MVPISW EMQCP T + RKVA+V
Sbjct: 69 SLGDAQSNYLLSTAENELGVVVARSEAGVQMVPISWCEMQCPQTHTKDFRKVARV 123
>SGD|S000005176 [details] [associations]
symbol:CSL4 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IC] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IDA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0043628 "ncRNA 3'-end
processing" evidence=IC] [GO:0071051 "polyadenylation-dependent
snoRNA 3'-end processing" evidence=IC] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IGI;IMP] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] InterPro:IPR019495 Pfam:PF10447
SGD:S000005176 GO:GO:0005730 EMBL:BK006947 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 EMBL:Z69381 GO:GO:0000176
eggNOG:COG1096 HOGENOM:HOG000177330 KO:K07573 OrthoDB:EOG4CZFRH
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 EMBL:Z71508 PIR:S63198
RefSeq:NP_014167.1 ProteinModelPortal:P53859 SMR:P53859
DIP:DIP-6785N IntAct:P53859 MINT:MINT-614245 STRING:P53859
PaxDb:P53859 PeptideAtlas:P53859 PRIDE:P53859 EnsemblFungi:YNL232W
GeneID:855489 KEGG:sce:YNL232W CYGD:YNL232w
GeneTree:ENSGT00390000015287 OMA:QRANVEI NextBio:979469
Genevestigator:P53859 GermOnline:YNL232W GO:GO:0071051
Uniprot:P53859
Length = 292
Score = 250 (93.1 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 53/92 (57%), Positives = 64/92 (69%)
Query: 106 EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAE 165
E F GIIR QDVR+T+ D+V + F+PGDIVRA VLSLGD Y+L+TA+NDLGVV A
Sbjct: 199 ETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARNDLGVVFAR 258
Query: 166 ST--AGGTMVPISWTEMQCPLTGQTEQRKVAK 195
+ AGG M W M P+TG TE+RK AK
Sbjct: 259 AANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290
Score = 60 (26.2 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 32 AKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRM 91
A N + ++ +L +S P + R T + + +P+ G +V+ RVT++ +
Sbjct: 93 ASPNDVTRRTVKNIL--VSVLPGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQR 150
Query: 92 ASADIMCVGAK 102
A+ +I+ V K
Sbjct: 151 ANVEILAVEDK 161
>DICTYBASE|DDB_G0285377 [details] [associations]
symbol:DDB_G0285377 "3'-5' exoribonuclease CSL4
homolog" species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447
dictyBase:DDB_G0285377 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0000178 eggNOG:COG1096 KO:K07573 InterPro:IPR025721
Pfam:PF14382 RefSeq:XP_638281.1 ProteinModelPortal:Q54N99
STRING:Q54N99 EnsemblProtists:DDB0186485 GeneID:8625089
KEGG:ddi:DDB_G0285377 InParanoid:Q54N99 OMA:NGIIRIQ Uniprot:Q54N99
Length = 156
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 57/150 (38%), Positives = 89/150 (59%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQ----------- 58
++TPG+ L K ++ + +G YV H G +Y+S+ G + D+ ++
Sbjct: 9 IITPGQRLCKESDFISSEGTYV--HKGYIYSSVLGFKHVIKRNIDTTNENNVNNSNNSNE 66
Query: 59 ----RPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQ 114
+ + V K VPE GS+V +V ++ ++AS I+CVG K+++E F+GIIR
Sbjct: 67 IENNKDYIVVLKEKEPSVVPEIGSIVTVQVLRINPKLASVAILCVGTKALKETFNGIIRI 126
Query: 115 QDVRATEIDKVDMHLSFRPGDIVRASVLSL 144
QDVRATEIDKV+++ SFRPGDIV A ++ L
Sbjct: 127 QDVRATEIDKVEIYKSFRPGDIVLAQIVCL 156
>CGD|CAL0001085 [details] [associations]
symbol:orf19.1026 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0070481 "nuclear-transcribed mRNA catabolic process, non-stop
decay" evidence=IEA] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR019495 Pfam:PF10447
CGD:CAL0001085 GO:GO:0003723 EMBL:AACQ01000121 GO:GO:0000178
eggNOG:COG1096 RefSeq:XP_713631.1 ProteinModelPortal:Q59VR7
STRING:Q59VR7 GeneID:3644678 KEGG:cal:CaO19.1026 Uniprot:Q59VR7
Length = 330
Score = 213 (80.0 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 48/91 (52%), Positives = 60/91 (65%)
Query: 106 EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAE 165
E F GIIR D+R TE DK+ + F+PGDIV+A V+SLGD Y+L+TAKN+LGVV A+
Sbjct: 235 ENFKGIIRINDIRLTERDKLKLIDCFKPGDIVKAQVISLGDGSNYYLTTAKNELGVVFAK 294
Query: 166 ST--AGGTMVPISWTEMQCPLTGQTEQRKVA 194
S AG M PI W M +G E+RK A
Sbjct: 295 SENGAGDLMYPIDWQNMIDINSGVIEKRKNA 325
Score = 45 (20.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 61 TVEVTGHKAHGPV--PEPGSVVIARVTKVMTRMASADIM 97
T +G KA + P+ +V+ R+TK+ A +I+
Sbjct: 139 TSNQSGSKAISAIALPKENDIVLVRITKITKIQAYCEII 177
>UNIPROTKB|Q59VR7 [details] [associations]
symbol:CSL4 "Likely exosome component Csl4p" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR019495 Pfam:PF10447 CGD:CAL0001085
GO:GO:0003723 EMBL:AACQ01000121 GO:GO:0000178 eggNOG:COG1096
RefSeq:XP_713631.1 ProteinModelPortal:Q59VR7 STRING:Q59VR7
GeneID:3644678 KEGG:cal:CaO19.1026 Uniprot:Q59VR7
Length = 330
Score = 213 (80.0 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 48/91 (52%), Positives = 60/91 (65%)
Query: 106 EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAE 165
E F GIIR D+R TE DK+ + F+PGDIV+A V+SLGD Y+L+TAKN+LGVV A+
Sbjct: 235 ENFKGIIRINDIRLTERDKLKLIDCFKPGDIVKAQVISLGDGSNYYLTTAKNELGVVFAK 294
Query: 166 ST--AGGTMVPISWTEMQCPLTGQTEQRKVA 194
S AG M PI W M +G E+RK A
Sbjct: 295 SENGAGDLMYPIDWQNMIDINSGVIEKRKNA 325
Score = 45 (20.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 61 TVEVTGHKAHGPV--PEPGSVVIARVTKVMTRMASADIM 97
T +G KA + P+ +V+ R+TK+ A +I+
Sbjct: 139 TSNQSGSKAISAIALPKENDIVLVRITKITKIQAYCEII 177
>UNIPROTKB|B1AMU4 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005634
GO:GO:0003723 GO:GO:0000178 HOGENOM:HOG000177330 EMBL:AL355490
UniGene:Hs.632089 HGNC:HGNC:17286 HOVERGEN:HBG051516
InterPro:IPR025721 Pfam:PF14382 IPI:IPI00642493 SMR:B1AMU4
Ensembl:ENST00000370886 Uniprot:B1AMU4
Length = 178
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 59/138 (42%), Positives = 81/138 (58%)
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRA 119
P V V +P+ G++V +V+ + +R A I+ VG+ ++ F G IR++DVRA
Sbjct: 51 PVVSVVRETESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRA 110
Query: 120 TEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWT 178
TE DK+ SLGDA++ Y L+TA+N+LGVV A S +G MVPISW
Sbjct: 111 TEKDKI-----------------SLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWC 153
Query: 179 EMQCPLTGQTEQRKVAKV 196
EMQCP T E RKVA+V
Sbjct: 154 EMQCPKTHTKEFRKVARV 171
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 39/115 (33%), Positives = 59/115 (51%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDM 127
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR++DVRATE DK+ +
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKISL 118
>UNIPROTKB|B1AMU7 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR019495
Pfam:PF10447 GO:GO:0003723 GO:GO:0000178 HOGENOM:HOG000177330
EMBL:AL355490 UniGene:Hs.632089 HGNC:HGNC:17286 HOVERGEN:HBG051516
InterPro:IPR025721 Pfam:PF14382 IPI:IPI00552886 SMR:B1AMU7
Ensembl:ENST00000370884 Uniprot:B1AMU7
Length = 154
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 54/94 (57%), Positives = 67/94 (71%)
Query: 104 VREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVV 162
VRE S ++ DV A KV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV
Sbjct: 56 VRETESQLL--PDVGAIVTCKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVV 113
Query: 163 SAESTAGGTMVPISWTEMQCPLTGQTEQRKVAKV 196
A S +G MVPISW EMQCP T E RKVA+V
Sbjct: 114 VAHSESGIQMVPISWCEMQCPKTHTKEFRKVARV 147
>WB|WBGene00012966 [details] [associations]
symbol:exos-1 species:6239 "Caenorhabditis elegans"
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0005634 GO:GO:0009792
GO:GO:0005737 GO:GO:0040010 GO:GO:0040018 GO:GO:0000003
GO:GO:0003723 GO:GO:0000178 KO:K07573 GeneTree:ENSGT00390000015287
InterPro:IPR025721 Pfam:PF14382 EMBL:AL023844 PIR:T26982
RefSeq:NP_499416.1 ProteinModelPortal:Q9XXD2 SMR:Q9XXD2
STRING:Q9XXD2 PaxDb:Q9XXD2 EnsemblMetazoa:Y48A6B.5.1
EnsemblMetazoa:Y48A6B.5.2 GeneID:176532 KEGG:cel:CELE_Y48A6B.5
UCSC:Y48A6B.5 CTD:176532 WormBase:Y48A6B.5 eggNOG:NOG267705
HOGENOM:HOG000021244 InParanoid:Q9XXD2 OMA:RAYYLST NextBio:892972
Uniprot:Q9XXD2
Length = 208
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 61/193 (31%), Positives = 98/193 (50%)
Query: 10 LVTPGE-VLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
LV PG+ VL E + GKG Y A N ++AS+ G + S + +EV +
Sbjct: 6 LVAPGDKVLDAIGEYRMGKGLYEA--NRRIFASVAGFVNVYGFRDKSDNLVQVIEVRRSE 63
Query: 69 A---HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKV 125
+ +P G++V A+V V R A DI+ +G K +++FS ++ ++ +R E +
Sbjct: 64 DQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSALLPKKKLRPLEPELS 123
Query: 126 DMHLSF-RPGDIVRASVLSLGDARAYF-LSTAKNDLGVVSAESTAGGTMVPISWTEMQCP 183
+ +F RP D + A V + + F LS A+++LGVV G M + W +
Sbjct: 124 EPFKNFVRPNDYILAKVCEDAEIKDKFVLSIAEDELGVVLCRGRFGEPMQKVDWNTVVST 183
Query: 184 LTGQTEQRKVAKV 196
TG+TE RK+AKV
Sbjct: 184 RTGKTEPRKMAKV 196
>GENEDB_PFALCIPARUM|MAL7P1.104 [details] [associations]
symbol:MAL7P1.104 "3'-5' exoribonuclease Csl4
homolog, putative" species:5833 "Plasmodium falciparum" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0000178 "exosome (RNase complex)" evidence=ISS]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0000178 GO:GO:0006364
GO:GO:0000175 EMBL:AL844506 HOGENOM:HOG000177330 KO:K07573
InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
GO:GO:0008312 OMA:NGIIRIQ RefSeq:XP_001349101.1
ProteinModelPortal:Q8IBQ2 EnsemblProtists:MAL7P1.104:mRNA
GeneID:2654956 KEGG:pfa:MAL7P1.104 EuPathDB:PlasmoDB:PF3D7_0720000
ProtClustDB:CLSZ2432407 Uniprot:Q8IBQ2
Length = 195
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 52/191 (27%), Positives = 94/191 (49%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E++ +V PGE LG E G Y+ K + +S+ G + ++ + D++ + V
Sbjct: 4 EDDDDIVIPGEFLGLQAEYINGNNTYLLKDE--IRSSILGQ-KIINK---NNDKKTIISV 57
Query: 65 TGHKAHGP-VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID 123
K +P+ G +VI +V +V M I+ + G I + D+ E +
Sbjct: 58 YNLKPPSLYLPKIGDIVICKVQRVSFHMIYCYILSSHNIFTKNALKGFILKSDIHINEGE 117
Query: 124 KVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCP 183
D + F+ GDI++A VLS+G +Y LST ++LGV++A + G + P++W +
Sbjct: 118 LGDNFICFKQGDIIKAKVLSIGQYSSYKLSTVGSELGVIAAFNQKGEILRPVAWN-LVLN 176
Query: 184 LTGQTEQRKVA 194
+ T +R+ A
Sbjct: 177 INDMTFERRKA 187
>UNIPROTKB|Q8IBQ2 [details] [associations]
symbol:MAL7P1.104 "3'-5' exoribonuclease Csl4 homolog,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000178 "exosome
(RNase complex)" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0000178 GO:GO:0006364
GO:GO:0000175 EMBL:AL844506 HOGENOM:HOG000177330 KO:K07573
InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
GO:GO:0008312 OMA:NGIIRIQ RefSeq:XP_001349101.1
ProteinModelPortal:Q8IBQ2 EnsemblProtists:MAL7P1.104:mRNA
GeneID:2654956 KEGG:pfa:MAL7P1.104 EuPathDB:PlasmoDB:PF3D7_0720000
ProtClustDB:CLSZ2432407 Uniprot:Q8IBQ2
Length = 195
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 52/191 (27%), Positives = 94/191 (49%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E++ +V PGE LG E G Y+ K + +S+ G + ++ + D++ + V
Sbjct: 4 EDDDDIVIPGEFLGLQAEYINGNNTYLLKDE--IRSSILGQ-KIINK---NNDKKTIISV 57
Query: 65 TGHKAHGP-VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID 123
K +P+ G +VI +V +V M I+ + G I + D+ E +
Sbjct: 58 YNLKPPSLYLPKIGDIVICKVQRVSFHMIYCYILSSHNIFTKNALKGFILKSDIHINEGE 117
Query: 124 KVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCP 183
D + F+ GDI++A VLS+G +Y LST ++LGV++A + G + P++W +
Sbjct: 118 LGDNFICFKQGDIIKAKVLSIGQYSSYKLSTVGSELGVIAAFNQKGEILRPVAWN-LVLN 176
Query: 184 LTGQTEQRKVA 194
+ T +R+ A
Sbjct: 177 INDMTFERRKA 187
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 198 198 0.00083 111 3 11 23 0.37 33
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 577 (61 KB)
Total size of DFA: 142 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.79u 0.11s 17.90t Elapsed: 00:00:01
Total cpu time: 17.80u 0.11s 17.91t Elapsed: 00:00:01
Start: Fri May 10 08:16:24 2013 End: Fri May 10 08:16:25 2013