Query 029155
Match_columns 198
No_of_seqs 176 out of 909
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nn6_I 3'-5' exoribonuclease C 100.0 8.8E-54 3E-58 353.4 12.9 186 6-197 17-203 (209)
2 3m7n_A Putative uncharacterize 100.0 2.1E-51 7.3E-56 331.9 20.5 170 8-196 1-173 (179)
3 2nn6_H Exosome complex exonucl 100.0 4.2E-36 1.4E-40 260.1 9.9 166 5-186 36-207 (308)
4 2je6_I RRP4, exosome complex R 100.0 7.4E-32 2.5E-36 227.9 14.9 141 6-166 14-162 (251)
5 2ba0_A Archeal exosome RNA bin 100.0 2E-31 6.9E-36 222.5 17.3 133 8-162 2-134 (229)
6 2z0s_A Probable exosome comple 100.0 8.1E-31 2.8E-35 219.6 10.7 136 8-162 9-146 (235)
7 2nn6_G Exosome complex exonucl 100.0 1.8E-29 6.3E-34 216.7 12.6 139 7-162 38-207 (289)
8 2ja9_A Exosome complex exonucl 99.7 2.3E-17 7.7E-22 132.3 12.1 83 70-163 1-90 (175)
9 2k52_A Uncharacterized protein 99.3 4.7E-11 1.6E-15 83.4 10.3 70 74-157 3-73 (80)
10 2k4k_A GSP13, general stress p 99.2 3.5E-11 1.2E-15 91.7 9.9 73 74-156 5-78 (130)
11 2khi_A 30S ribosomal protein S 99.2 8.4E-11 2.9E-15 87.6 10.4 87 61-157 15-103 (115)
12 2eqs_A ATP-dependent RNA helic 99.2 5.6E-11 1.9E-15 87.0 8.6 77 72-156 8-85 (103)
13 2khj_A 30S ribosomal protein S 99.2 4.2E-11 1.5E-15 88.4 7.9 77 71-157 26-103 (109)
14 1kl9_A Eukaryotic translation 99.2 7.1E-11 2.4E-15 95.0 9.7 79 72-158 11-90 (182)
15 2a19_A EIF-2- alpha, eukaryoti 99.2 1.2E-10 4.1E-15 93.1 10.4 77 72-158 11-90 (175)
16 2cqo_A Nucleolar protein of 40 99.2 7.6E-11 2.6E-15 88.6 8.1 77 71-157 17-97 (119)
17 1luz_A Protein K3, protein K2; 99.1 2.4E-10 8.1E-15 81.5 7.0 73 72-156 7-83 (88)
18 1go3_E DNA-directed RNA polyme 99.0 6.4E-10 2.2E-14 89.2 9.0 82 72-162 77-173 (187)
19 3aev_A Translation initiation 99.0 1.1E-09 3.9E-14 93.2 10.9 77 71-157 6-85 (275)
20 1q8k_A Eukaryotic translation 99.0 2.2E-09 7.7E-14 92.7 9.7 76 72-157 9-87 (308)
21 1wi5_A RRP5 protein homolog; S 99.0 1.9E-09 6.6E-14 80.5 7.9 86 73-166 18-104 (119)
22 4ayb_E DNA-directed RNA polyme 98.9 5.3E-09 1.8E-13 83.4 10.3 82 72-162 77-172 (180)
23 3cw2_C Translation initiation 98.9 1.7E-09 5.9E-14 91.6 5.4 78 71-158 6-86 (266)
24 2c35_B Human RPB7, DNA-directe 98.8 2.4E-08 8.3E-13 79.0 8.6 83 71-162 76-171 (172)
25 1y14_B B16, RPB7, DNA-directed 98.7 5.8E-08 2E-12 76.9 8.6 80 73-162 80-171 (171)
26 3go5_A Multidomain protein wit 98.6 1.4E-07 4.7E-12 80.7 9.5 73 72-162 148-222 (285)
27 4aid_A Polyribonucleotide nucl 98.6 5.6E-09 1.9E-13 99.1 0.0 75 72-156 633-707 (726)
28 3h0g_G DNA-directed RNA polyme 98.6 4.3E-08 1.5E-12 77.8 4.9 81 72-162 80-172 (172)
29 2b8k_G B16, DNA-directed RNA p 98.6 1.2E-07 4.2E-12 77.9 7.7 84 72-165 79-174 (215)
30 3psi_A Transcription elongatio 98.5 8.4E-08 2.9E-12 95.5 7.1 79 72-160 898-978 (1219)
31 3psf_A Transcription elongatio 98.4 3.8E-08 1.3E-12 96.5 0.0 79 72-160 901-981 (1030)
32 3cdi_A Polynucleotide phosphor 98.4 4.5E-08 1.6E-12 93.0 0.0 75 72-156 623-697 (723)
33 3bzc_A TEX; helix-turn-helix, 98.4 1.6E-07 5.5E-12 89.9 3.6 76 73-158 651-727 (785)
34 3ayh_B DNA-directed RNA polyme 98.3 2.4E-06 8.2E-11 69.4 8.6 82 72-162 77-199 (203)
35 1e3p_A Guanosine pentaphosphat 98.2 6.1E-08 2.1E-12 92.6 -2.6 76 72-157 663-742 (757)
36 1hh2_P NUSA, N utilization sub 98.0 1E-05 3.4E-10 70.8 7.9 70 71-157 129-201 (344)
37 2asb_A Transcription elongatio 98.0 8.7E-06 3E-10 68.2 6.4 72 72-159 3-84 (251)
38 1k0r_A NUSA; two component arr 97.8 2.6E-05 8.7E-10 68.6 6.4 72 71-158 125-206 (366)
39 2bx2_L Ribonuclease E, RNAse E 97.7 0.00017 5.8E-09 66.1 9.7 75 73-155 42-126 (517)
40 2ckz_B C25, DNA-directed RNA p 97.6 0.00014 4.9E-09 59.6 7.2 67 71-145 76-154 (218)
41 3go5_A Multidomain protein wit 97.4 0.00074 2.5E-08 57.5 9.7 68 73-155 66-135 (285)
42 2bh8_A 1B11; transcription, mo 96.6 0.0018 6.2E-08 46.7 4.0 41 73-121 58-98 (101)
43 2id0_A Exoribonuclease 2; RNAs 96.6 0.0053 1.8E-07 57.6 7.9 75 74-155 556-643 (644)
44 3d0f_A Penicillin-binding 1 tr 95.8 0.042 1.5E-06 39.4 7.9 60 73-140 30-93 (106)
45 2vnu_D Exosome complex exonucl 95.8 0.012 4E-07 56.3 5.9 70 78-155 671-760 (760)
46 2wp8_J Exosome complex exonucl 95.3 0.028 9.4E-07 55.2 6.8 71 77-155 887-977 (977)
47 3v2d_0 50S ribosomal protein L 93.3 0.12 4.1E-06 35.9 4.6 59 3-67 23-84 (85)
48 3r8s_W 50S ribosomal protein L 91.8 0.22 7.6E-06 33.9 4.3 59 3-66 14-75 (76)
49 2zjr_T 50S ribosomal protein L 91.3 0.19 6.6E-06 35.4 3.7 59 3-67 23-84 (91)
50 2rf4_A DNA-directed RNA polyme 90.7 0.74 2.5E-05 37.1 7.3 75 73-156 126-210 (214)
51 3j20_Y 30S ribosomal protein S 86.2 0.72 2.5E-05 28.8 3.3 27 163-190 19-48 (50)
52 3h0g_L DNA-directed RNA polyme 85.3 0.24 8.3E-06 32.6 0.8 29 161-189 19-48 (63)
53 2ftc_O L27MT, MRP-L27, mitocho 83.5 1.1 3.6E-05 30.0 3.4 43 3-47 23-68 (69)
54 1y71_A Kinase-associated prote 82.9 2.2 7.6E-05 31.8 5.2 36 74-113 8-52 (130)
55 1twf_L ABC10-alpha, DNA-direct 81.7 0.42 1.4E-05 32.0 0.9 27 161-187 26-53 (70)
56 3qt1_I DNA-directed RNA polyme 78.5 0.62 2.1E-05 35.0 1.0 26 165-190 26-57 (133)
57 3h0g_I DNA-directed RNA polyme 75.7 1.9 6.4E-05 31.2 2.9 27 164-190 5-37 (113)
58 1vq8_Z 50S ribosomal protein L 75.1 2.7 9.2E-05 28.9 3.4 26 165-190 29-56 (83)
59 2k4x_A 30S ribosomal protein S 71.7 2.4 8.3E-05 26.8 2.3 29 164-192 19-49 (55)
60 1pft_A TFIIB, PFTFIIBN; N-term 71.7 3 0.0001 25.4 2.7 26 165-190 7-35 (50)
61 2kdx_A HYPA, hydrogenase/ureas 69.0 1.9 6.3E-05 31.3 1.5 32 162-194 72-105 (119)
62 3v2d_5 50S ribosomal protein L 66.2 1.6 5.3E-05 28.3 0.5 29 163-195 30-59 (60)
63 3bbo_X Ribosomal protein L27; 65.6 0.43 1.5E-05 37.9 -2.7 59 3-67 80-141 (198)
64 2js4_A UPF0434 protein BB2007; 65.5 5.8 0.0002 26.3 3.3 26 165-190 10-37 (70)
65 4ayb_P DNA-directed RNA polyme 65.5 2 6.8E-05 26.5 0.9 32 165-196 5-40 (48)
66 2hf1_A Tetraacyldisaccharide-1 65.0 5.1 0.00018 26.4 2.9 26 165-190 10-37 (68)
67 2jr6_A UPF0434 protein NMA0874 63.7 5.6 0.00019 26.2 2.9 26 165-190 10-37 (68)
68 2qf4_A Cell shape determining 62.6 16 0.00056 28.0 5.9 59 80-138 47-116 (172)
69 2pk7_A Uncharacterized protein 62.6 6.2 0.00021 26.1 3.0 26 165-190 10-37 (69)
70 2ja9_A Exosome complex exonucl 60.8 9.6 0.00033 29.6 4.3 30 70-100 48-77 (175)
71 2bh8_A 1B11; transcription, mo 59.3 41 0.0014 23.3 7.2 61 75-146 12-74 (101)
72 3irb_A Uncharacterized protein 59.2 6 0.0002 29.7 2.7 30 160-192 43-74 (145)
73 3a43_A HYPD, hydrogenase nicke 58.9 3.3 0.00011 31.0 1.2 30 162-191 69-119 (139)
74 2zjr_Z 50S ribosomal protein L 58.2 2.2 7.7E-05 27.5 0.1 28 163-194 30-58 (60)
75 2jny_A Uncharacterized BCR; st 57.9 8.2 0.00028 25.4 2.9 26 165-190 12-39 (67)
76 3u50_C Telomerase-associated p 57.9 17 0.00058 28.2 5.2 41 137-188 27-68 (172)
77 2lcq_A Putative toxin VAPC6; P 57.2 3.7 0.00013 31.2 1.3 27 164-191 133-160 (165)
78 1gh9_A 8.3 kDa protein (gene M 56.1 8.9 0.00031 25.5 2.9 25 165-190 6-31 (71)
79 3j21_g 50S ribosomal protein L 55.3 5 0.00017 25.1 1.4 28 165-195 16-44 (51)
80 2akl_A PHNA-like protein PA012 52.4 6.5 0.00022 29.4 1.9 25 164-188 28-53 (138)
81 1dl6_A Transcription factor II 52.3 9.1 0.00031 24.2 2.3 27 165-191 13-42 (58)
82 1vk6_A NADH pyrophosphatase; 1 50.7 10 0.00035 31.2 3.0 30 164-193 108-139 (269)
83 2con_A RUH-035 protein, NIN on 50.6 4.8 0.00017 27.4 0.9 30 164-195 16-46 (79)
84 2gnr_A Conserved hypothetical 50.3 13 0.00044 27.9 3.3 30 162-194 46-78 (145)
85 4gop_C Putative uncharacterize 47.9 36 0.0012 29.8 6.3 41 136-188 293-336 (444)
86 2j5u_A MREC protein; bacterial 47.5 36 0.0012 27.7 5.9 59 80-138 109-177 (255)
87 3h8z_A FragIle X mental retard 46.8 83 0.0028 23.1 7.2 67 60-142 6-72 (128)
88 1l1o_C Replication protein A 7 46.2 42 0.0014 25.8 5.8 41 136-188 28-71 (181)
89 4fu6_A PC4 and SFRS1-interacti 45.9 7.8 0.00027 29.2 1.5 18 126-143 18-35 (153)
90 3l0o_A Transcription terminati 45.1 12 0.0004 33.3 2.7 73 21-103 53-130 (427)
91 2kpi_A Uncharacterized protein 45.0 22 0.00075 22.3 3.3 25 165-190 12-39 (56)
92 3q87_A Putative uncharacterize 44.5 11 0.00037 27.9 2.0 15 178-192 98-112 (125)
93 1yez_A MM1357; MAR30, autostru 41.1 35 0.0012 21.7 3.9 22 75-96 45-66 (68)
94 2k52_A Uncharacterized protein 41.0 24 0.00082 23.1 3.2 24 73-96 45-68 (80)
95 3cc2_Z 50S ribosomal protein L 40.9 22 0.00076 25.9 3.2 25 165-189 62-88 (116)
96 1yvc_A MRR5; structure, autost 39.0 39 0.0013 21.7 3.9 22 75-96 47-68 (70)
97 1a62_A RHO; transcription term 37.5 17 0.00058 26.8 2.1 42 61-102 78-122 (130)
98 2ba0_A Archeal exosome RNA bin 36.8 47 0.0016 26.6 4.9 36 130-166 54-89 (229)
99 3qby_A Hepatoma-derived growth 36.3 13 0.00044 25.7 1.3 17 127-143 2-18 (94)
100 3pwf_A Rubrerythrin; non heme 36.1 17 0.00059 27.9 2.1 24 163-188 138-162 (170)
101 2dgy_A MGC11102 protein; EIF-1 35.3 1.2E+02 0.0041 21.6 7.0 58 72-145 10-68 (111)
102 1wi5_A RRP5 protein homolog; S 34.2 48 0.0016 23.4 4.1 27 128-155 16-42 (119)
103 6rxn_A Rubredoxin; electron tr 33.9 12 0.00042 22.7 0.7 24 165-188 6-39 (46)
104 2k2d_A Ring finger and CHY zin 33.6 49 0.0017 22.2 3.8 35 161-195 35-71 (79)
105 2r7d_A Ribonuclease II family 33.4 1.6E+02 0.0056 26.0 8.4 56 75-152 402-458 (469)
106 1h7b_A Anaerobic ribonucleotid 33.0 11 0.00038 34.9 0.6 27 163-189 540-568 (605)
107 2z0s_A Probable exosome comple 32.8 50 0.0017 26.5 4.5 34 130-164 63-96 (235)
108 3tbo_A Zinc finger, CDGSH-type 31.9 36 0.0012 21.9 2.7 26 142-171 5-30 (60)
109 2eqs_A ATP-dependent RNA helic 31.4 46 0.0016 23.0 3.5 22 73-94 60-81 (103)
110 1vq8_Q 50S ribosomal protein L 30.5 32 0.0011 24.1 2.5 17 81-97 61-77 (96)
111 2nn6_I 3'-5' exoribonuclease C 30.0 65 0.0022 25.4 4.6 24 73-96 135-160 (209)
112 2k4k_A GSP13, general stress p 29.9 66 0.0023 23.2 4.3 28 127-155 1-28 (130)
113 2zkr_2 60S ribosomal protein L 29.6 13 0.00044 26.3 0.3 30 161-192 14-44 (97)
114 1lko_A Rubrerythrin all-iron(I 29.4 26 0.00089 27.3 2.1 25 163-188 155-180 (191)
115 2je6_I RRP4, exosome complex R 29.2 72 0.0025 25.9 4.9 34 130-164 71-104 (251)
116 2oqk_A Putative translation in 29.2 98 0.0033 22.1 5.1 24 72-96 27-51 (117)
117 2ivw_A PILP pilot protein; lip 29.2 82 0.0028 22.6 4.6 27 69-95 47-76 (113)
118 2gmg_A Hypothetical protein PF 29.1 13 0.00045 26.6 0.3 30 159-188 63-93 (105)
119 2enn_A NPKC-theta, protein kin 29.0 50 0.0017 21.6 3.2 33 163-195 34-67 (77)
120 1faq_A RAF-1; transferase, ser 28.8 39 0.0013 20.1 2.4 28 164-195 15-43 (52)
121 2khj_A 30S ribosomal protein S 28.7 50 0.0017 22.9 3.4 24 73-96 75-98 (109)
122 1ri0_A Hepatoma-derived growth 28.3 30 0.001 24.6 2.1 15 128-142 17-31 (110)
123 3uej_A NPKC-delta, protein kin 28.3 21 0.00071 22.6 1.2 33 163-195 20-53 (65)
124 2z1c_A Hydrogenase expression/ 28.0 1.3E+02 0.0045 19.8 5.5 16 81-96 6-21 (75)
125 2l89_A PWWP domain-containing 27.0 20 0.0007 25.3 1.0 15 129-143 4-18 (108)
126 2xzf_A Formamidopyrimidine-DNA 26.7 23 0.0008 29.1 1.5 23 165-187 244-270 (271)
127 1xjv_A Protection of telomeres 26.5 1.8E+02 0.0061 23.8 7.0 20 126-145 63-85 (294)
128 1h3z_A Hypothetical 62.8 kDa p 26.1 34 0.0012 24.0 2.1 14 129-142 5-18 (109)
129 1x0t_A Ribonuclease P protein 26.1 27 0.00092 25.3 1.5 24 165-188 67-103 (120)
130 2eli_A Protein kinase C alpha 25.8 37 0.0012 22.8 2.1 32 164-195 29-61 (85)
131 2enz_A NPKC-theta, protein kin 25.3 34 0.0012 21.6 1.8 32 164-195 24-56 (65)
132 2cqo_A Nucleolar protein of 40 25.1 74 0.0025 22.6 3.8 28 126-154 15-42 (119)
133 1fr3_A MOP, molybdate/tungstat 24.9 72 0.0025 19.3 3.3 52 78-142 7-59 (67)
134 1rfh_A RAS association (ralgds 24.8 61 0.0021 20.1 2.9 28 164-194 23-51 (59)
135 2y4x_A PILP protein; biosynthe 24.8 89 0.0031 21.5 4.0 25 70-94 45-72 (93)
136 2ftc_K 39S ribosomal protein L 24.5 94 0.0032 21.8 4.1 35 129-163 2-42 (98)
137 1kbe_A Kinase suppressor of RA 24.5 39 0.0013 20.5 1.8 28 164-195 15-43 (49)
138 1ee8_A MUTM (FPG) protein; bet 24.4 35 0.0012 28.0 2.1 24 164-187 236-263 (266)
139 2nn6_G Exosome complex exonucl 24.3 87 0.003 26.1 4.6 35 130-165 124-158 (289)
140 3dqy_A Toluene 1,2-dioxygenase 24.2 1.1E+02 0.0038 20.6 4.5 53 131-190 11-69 (106)
141 3r8s_0 50S ribosomal protein L 24.1 27 0.00091 22.0 1.0 27 163-194 27-54 (56)
142 3u6p_A Formamidopyrimidine-DNA 23.7 31 0.001 28.5 1.6 23 164-186 246-272 (273)
143 4gop_B Putative uncharacterize 23.4 2.1E+02 0.007 20.5 6.4 19 128-146 82-102 (136)
144 2ckk_A KIN17; beta barrel, rib 23.3 1.6E+02 0.0053 21.4 5.3 37 60-96 57-105 (127)
145 1k3x_A Endonuclease VIII; hydr 23.1 32 0.0011 28.1 1.6 22 165-186 236-261 (262)
146 2a19_A EIF-2- alpha, eukaryoti 22.9 1.1E+02 0.0039 23.2 4.7 25 72-96 60-84 (175)
147 2i5o_A DNA polymerase ETA; zin 22.8 40 0.0014 19.6 1.5 12 178-189 8-19 (39)
148 1vq8_T 50S ribosomal protein L 22.8 53 0.0018 23.9 2.6 38 81-118 60-98 (120)
149 3u5e_Y L33, YL33, 60S ribosoma 22.8 66 0.0022 23.7 3.1 38 81-118 67-105 (127)
150 2yuu_A NPKC-delta, protein kin 22.6 38 0.0013 22.5 1.7 32 164-195 29-61 (83)
151 1k82_A Formamidopyrimidine-DNA 22.5 34 0.0011 28.1 1.6 23 164-186 241-267 (268)
152 2kvf_A Zinc finger and BTB dom 22.3 36 0.0012 16.1 1.2 14 179-192 3-16 (28)
153 1ffk_W Ribosomal protein L37AE 22.1 48 0.0017 22.0 2.1 23 167-189 32-55 (73)
154 1khc_A DNA cytosine-5 methyltr 22.1 54 0.0018 24.5 2.6 16 128-143 9-24 (147)
155 2k3r_A Ribonuclease P protein 21.9 32 0.0011 25.0 1.2 10 179-188 89-98 (123)
156 2e6z_A Transcription elongatio 21.9 1E+02 0.0034 19.2 3.5 24 73-96 7-40 (59)
157 2kvg_A Zinc finger and BTB dom 21.9 33 0.0011 16.4 1.0 14 179-192 3-16 (27)
158 1rik_A E6APC1 peptide; E6-bind 21.7 39 0.0013 16.0 1.3 13 180-192 3-15 (29)
159 2k5c_A Uncharacterized protein 21.6 33 0.0011 23.6 1.2 10 179-188 51-60 (95)
160 4b6d_A RAC GTPase-activating p 21.4 71 0.0024 20.1 2.7 28 164-192 20-48 (61)
161 2k5r_A Uncharacterized protein 21.2 60 0.002 22.8 2.5 13 178-190 52-64 (97)
162 2jne_A Hypothetical protein YF 21.2 99 0.0034 21.8 3.6 29 162-191 31-60 (101)
163 2fnf_X Putative RAS effector N 21.0 48 0.0016 21.6 1.9 29 164-195 36-65 (72)
164 1ptq_A Protein kinase C delta 20.9 36 0.0012 20.0 1.2 31 164-194 12-43 (50)
165 2p9r_A Alpha-2-M, alpha-2-macr 20.8 1E+02 0.0034 20.7 3.7 18 128-145 10-27 (102)
166 2elp_A Zinc finger protein 406 20.3 42 0.0014 17.3 1.3 15 178-192 8-22 (37)
167 2do3_A Transcription elongatio 20.1 1.9E+02 0.0066 18.9 4.7 24 70-93 14-47 (69)
No 1
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=100.00 E-value=8.8e-54 Score=353.45 Aligned_cols=186 Identities=45% Similarity=0.703 Sum_probs=164.5
Q ss_pred cCCcEEecCCccCCCCCeeeCCCEEEeCCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEE
Q 029155 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVT 85 (198)
Q Consensus 6 ~~~~iV~PGd~l~~~~e~~~G~Gty~~~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~~~~~~~p~vGDiViG~V~ 85 (198)
+++++|+|||.|+..++|++|+|||.++|+ ||||++|.+.... .++.+++|+|.|++..+|.|++||+|+|+|+
T Consensus 17 ~~~~iV~PGd~l~~~~~~~~G~Gty~~~g~--I~Asv~G~v~~~~----~~~~~~vi~V~p~~~~~y~p~vGDvV~G~V~ 90 (209)
T 2nn6_I 17 PPVRYCIPGERLCNLEEGSPGSGTYTRHGY--IFSSLAGCLMKSS----ENGALPVVSVVRETESQLLPDVGAIVTCKVS 90 (209)
T ss_dssp ---CCCCTTCEEEETTTCCCSSSCEEETTE--EECCSCSCBCCCB----CTTSSBC-CBCCSCCCCCCCCTTCEEEEEEE
T ss_pred CCCcEEcCCCCCCCCCCeeecCCEEEECCE--EEEEEEEEEEEec----cCCcccEEEEecCCCCcCCCCCCCEEEEEEE
Confidence 457899999999998899999999999999 9999999987631 1123467899998766799999999999999
Q ss_pred EEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCCc-cEEEEEecCCCeeeEE
Q 029155 86 KVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDAR-AYFLSTAKNDLGVVSA 164 (198)
Q Consensus 86 ~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~-~~~LSt~~~~lGvv~a 164 (198)
++++++|+|+|.++++++|..+|+|+||++|+++++.++.+|+++|++||+|+|+|+++++.+ .+.|||++++||||+|
T Consensus 91 ~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~k~~~lGVv~A 170 (209)
T 2nn6_I 91 SINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVA 170 (209)
T ss_dssp EECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEECCSSSCEECCC
T ss_pred EEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEEEecCCCcEEEE
Confidence 999999999999999999999999999999999999888899999999999999999998754 6999999999999999
Q ss_pred ecCCCceeEEccCCeEEeCCCCCEEeeeeCCCC
Q 029155 165 ESTAGGTMVPISWTEMQCPLTGQTEQRKVAKVG 197 (198)
Q Consensus 165 ~~~~g~~m~~~~~~~~~c~~cg~~e~RKva~~~ 197 (198)
+|..|++|+|.+|++|+||+||++|+||+|++.
T Consensus 171 ~c~~g~~m~~~~~~~m~cp~cg~~E~RKva~~~ 203 (209)
T 2nn6_I 171 HSESGIQMVPISWCEMQCPKTHTKEFRKVARVQ 203 (209)
T ss_dssp BCSSSCBCEEEETTEEECTTTTCCBCCCC----
T ss_pred EcCCCCEEEEccCCEEECCCCCCEEeeccCCCC
Confidence 996699999999999999999999999999974
No 2
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=100.00 E-value=2.1e-51 Score=331.88 Aligned_cols=170 Identities=24% Similarity=0.390 Sum_probs=159.7
Q ss_pred CcEEecCCccCCCCCeeeCCCEEEeCCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEE
Q 029155 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (198)
Q Consensus 8 ~~iV~PGd~l~~~~e~~~G~Gty~~~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~~~~~~~p~vGDiViG~V~~v 87 (198)
|++|+|||.|+.+++|.+|+|||.++++ ||||++|.+++. ++.++|+|++..+|.|+ ||+|+|+|++|
T Consensus 1 m~iV~PGd~l~~~~~~~~G~Gty~~~~~--i~as~~G~v~~~---------~~~v~V~~~~~~~y~p~-GdiV~G~V~~V 68 (179)
T 3m7n_A 1 MRFVMPGDRIGSAEEYVKGEGVYEEGGE--LFAAVAGKLIIK---------DRVAKVESISPIPEIVK-GDVVLGRVVDL 68 (179)
T ss_dssp CCEECTTCEEEETTTSEECTTEEEETTE--EEESSSEEEEEE---------TTEEEEEESSCCCCCCT-TCEEEEEEEEE
T ss_pred CeEEcCCCCCCCCCCEeccCCEEEeCCE--EEEEEEEEEEEe---------CCEEEEEECCCCcccCC-CCEEEEEEEEE
Confidence 3799999999998999999999999988 999999999983 47999999877789999 99999999999
Q ss_pred ecceEEEEEeee--ccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCCccEEEEEecCCCeeeEEe
Q 029155 88 MTRMASADIMCV--GAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAE 165 (198)
Q Consensus 88 ~~~~~~V~I~~v--~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lGvv~a~ 165 (198)
.+++|+|+|.++ +++++..+++|+||+||+++.+.+ +|+++|++||+|+|+|++ +++.|||++++||||+|+
T Consensus 69 ~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~--~~~~~~~~GD~V~akVi~----~~i~LS~k~~~lGvv~a~ 142 (179)
T 3m7n_A 69 RNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVK--EISEAVGYLDILKARVIG----DNLRLSTKEEEMGVLRAL 142 (179)
T ss_dssp CSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCS--SGGGTCCTTCEEEEEEEE----TTTEEECCSTTCEEEECB
T ss_pred eCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhh--CHhhcCCCCCEEEEEEEC----CeEEEEEecCCCCEEEec
Confidence 999999999988 557788899999999999988776 999999999999999998 579999999999999999
Q ss_pred c-CCCceeEEccCCeEEeCCCCCEEeeeeCCC
Q 029155 166 S-TAGGTMVPISWTEMQCPLTGQTEQRKVAKV 196 (198)
Q Consensus 166 ~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~~ 196 (198)
| +||++|+|.+ ++|+||+||++|+||+|+.
T Consensus 143 ~~~~g~~m~~~~-~~~~cp~~g~~e~RKva~~ 173 (179)
T 3m7n_A 143 CSNCKTEMVREG-DILKCPECGRVEKRKISTD 173 (179)
T ss_dssp CTTTCCBCEECS-SSEECSSSCCEECCCBCTT
T ss_pred ccccCCceEECC-CEEECCCCCCEEEEecccc
Confidence 9 8999999999 9999999999999999985
No 3
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=4.2e-36 Score=260.08 Aligned_cols=166 Identities=20% Similarity=0.298 Sum_probs=133.1
Q ss_pred ccCCcEEecCCccCCCCCeeeCCCEEEeCCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEE
Q 029155 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARV 84 (198)
Q Consensus 5 ~~~~~iV~PGd~l~~~~e~~~G~Gty~~~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~~~~~~~p~vGDiViG~V 84 (198)
.+++++|+|||.|+..++|.+|+|||.++|+ ||||++|.+... ++.++|.|.+ .+|+|++||+|+|+|
T Consensus 36 ~~~~~iVlPGd~L~~~~~~~~G~Gty~~~g~--I~Asv~G~v~~~---------~~~vsV~p~~-~rY~P~vGDvViG~V 103 (308)
T 2nn6_H 36 DTKKHLVVPGDTITTDTGFMRGHGTYMGEEK--LIASVAGSVERV---------NKLICVKALK-TRYIGEVGDIVVGRI 103 (308)
T ss_dssp ----CBCCTTCBCCCCTTCCBCTTEEECSSS--EEECSSEEEEEE---------TTEEEEEESS-CCCCCCSSBCCCEEE
T ss_pred CCCCcEEeCCCCCCCCCCEeecCCeEEECCE--EEEEEEEEEEec---------CCEEEEeeCC-CccCCCCCCEEEEEE
Confidence 4567899999999988999999999999999 999999999873 4689999986 579999999999999
Q ss_pred EEEecceEEEEEeeeccccc--cC-cc-eeEEeccccccccccccccccCCCCCCEEEEEEEEeCCCccEEEEEecCCCe
Q 029155 85 TKVMTRMASADIMCVGAKSV--RE-KF-SGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLG 160 (198)
Q Consensus 85 ~~v~~~~~~V~I~~v~~~~l--~~-~~-~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lG 160 (198)
+++.+++|+|+|.+..+..+ +. .| .|++|.++. .|..+|+++|++||+|+|||+++++...+.|||++++||
T Consensus 104 t~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~----~D~~~m~~~l~vGDlV~ArVisv~~~~~i~LStr~~~LG 179 (308)
T 2nn6_H 104 TEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSA----EDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYG 179 (308)
T ss_dssp EEEETTEEEEECSSSSCEEEESSCCC-----------------CHHHHHHSCSSCEECCEEEEEETTTEEEEECCSSTTC
T ss_pred EEEeCceEEEEECCCcCCceechhhccccceeecccc----hhhhhhhccCCCCCEEEEEEEEcCCCCCEEEEecCcCCc
Confidence 99999999999965433221 11 23 244444432 234589999999999999999998777899999999999
Q ss_pred eeEEec--CCCceeEEccCCeEEeCCCC
Q 029155 161 VVSAES--TAGGTMVPISWTEMQCPLTG 186 (198)
Q Consensus 161 vv~a~~--~~g~~m~~~~~~~~~c~~cg 186 (198)
++.+.| .+...|+|..|++|+|+.||
T Consensus 180 kL~~G~v~~vs~~lv~r~~~~l~~l~~g 207 (308)
T 2nn6_H 180 KLGQGVLVQVSPSLVKRQKTHFHDLPCG 207 (308)
T ss_dssp EECSSCEEECCTTSCCCSTTCSCCCBTT
T ss_pred ccCCeEEEEEChhheechhheEecCCCC
Confidence 999988 45778999999999999998
No 4
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=99.98 E-value=7.4e-32 Score=227.89 Aligned_cols=141 Identities=21% Similarity=0.259 Sum_probs=127.0
Q ss_pred cCCcEEecCCccCCCCCeeeCC--CEEEeCCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEE
Q 029155 6 EEMVLVTPGEVLGKATEVKAGK--GAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIAR 83 (198)
Q Consensus 6 ~~~~iV~PGd~l~~~~e~~~G~--Gty~~~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~~~~~~~p~vGDiViG~ 83 (198)
.++++|+|||.|+. ++|.+|+ |||.++++ |||+++|.+... ++.++|.|+...+|.|++||+|+|+
T Consensus 14 ~~~~iV~PGd~l~~-~~~~~G~~~Gty~~~g~--i~as~~G~v~~~---------~~~v~V~p~~~~~y~p~~GDiV~G~ 81 (251)
T 2je6_I 14 QPRSIVVPGELLAE-GEFQIPWSPYILKINSK--YYSTVVGLFDVK---------DTQFEVIPLEGSFYYPKINDIVIGL 81 (251)
T ss_dssp CSSCEECTTCEEEE-ECCCCCCCTTEEEETTE--EEECSSEEEEEE---------TTEEEEEESCCSCCCCCTTCEEEEE
T ss_pred CCCcEEcCCCCCcc-CCeeeCCCCCEEEECCE--EEEEEEEEEEEe---------CCEEEEEECCCcccCCCCCCEEEEE
Confidence 35789999999996 6799999 99999999 999999999984 3589999998768999999999999
Q ss_pred EEEEecceEEEEEeeeccccccCcceeEEeccccccccccc-cccccCCCCCCEEEEEEEEeCCCccEEEEEecCCCe--
Q 029155 84 VTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDK-VDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLG-- 160 (198)
Q Consensus 84 V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~-~~~~~~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lG-- 160 (198)
|+++.+++|+|+| ..+++|+||+++++..+.+. .+|+++|++||+|+|+|+++++.+.+.||+++++||
T Consensus 82 V~~v~~~ga~VdI--------~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~~lG~L 153 (251)
T 2je6_I 82 VEDVEIYGWVVDI--------KAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGKDLGRV 153 (251)
T ss_dssp EEEECSSEEEEEC--------SSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCSTTCEEC
T ss_pred EEEEeCceEEEEc--------CCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEccccCCcc
Confidence 9999999999999 67899999999998655533 699999999999999999998777899999999999
Q ss_pred ---eeEEec
Q 029155 161 ---VVSAES 166 (198)
Q Consensus 161 ---vv~a~~ 166 (198)
++++.|
T Consensus 154 ~~G~v~~vs 162 (251)
T 2je6_I 154 SNGIVIDIM 162 (251)
T ss_dssp CSSCEEECC
T ss_pred cCCEEEEEC
Confidence 777766
No 5
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.97 E-value=2e-31 Score=222.51 Aligned_cols=133 Identities=23% Similarity=0.299 Sum_probs=119.4
Q ss_pred CcEEecCCccCCCCCeeeCCCEEEeCCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEE
Q 029155 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (198)
Q Consensus 8 ~~iV~PGd~l~~~~e~~~G~Gty~~~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~~~~~~~p~vGDiViG~V~~v 87 (198)
+++|+|||.|+. ++|.+|+|||.++++ ||||++|.+... ++.++|.|.+ .+|.|++||+|+|+|+++
T Consensus 2 ~~iV~PGd~l~~-~~~~~G~Gty~~~g~--i~as~~G~v~~~---------~~~v~V~p~~-~~y~p~~GDiV~G~V~~v 68 (229)
T 2ba0_A 2 RKIVLPGDLLST-NPRAAGYGTYVEGGK--VYAKIIGLFDQT---------ETHVRVIPLK-GRYTPSVGDVVIGIIREV 68 (229)
T ss_dssp CCEECTTCEEES-CTTSBCTTEEEETTE--EEECSSEEEEEC---------SSCEEEEECS-SSCCCCTTCEEEEEEEEE
T ss_pred CCEEcCCCCccc-CCeEecCCEEEeCCE--EEEEEEEEEEEe---------CCEEEEEeCC-CcccCCCCCEEEEEEEEE
Confidence 579999999995 679999999999999 999999999983 2479999986 469999999999999999
Q ss_pred ecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCCccEEEEEecCCCeee
Q 029155 88 MTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVV 162 (198)
Q Consensus 88 ~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lGvv 162 (198)
.+++|+|+| ..+++|+||+++++. +.+..+|+++|++||+|+|+|+++++.+.+.|||++++||++
T Consensus 69 ~~~~a~V~I--------~~~~~g~l~isev~~-~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~lG~L 134 (229)
T 2ba0_A 69 AANGWAVDI--------YSPYQAFLPVSENPE-MKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRICRPI 134 (229)
T ss_dssp CSSEEEEEC--------SSSSCEEEEGGGCTT-CCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSSCEEE
T ss_pred eCCeEEEEe--------CCCeEEEEEHHHccc-cccccchhcccCCCCEEEEEEEEECCCCcEEEEEccccCCcc
Confidence 999999999 678999999999983 223458999999999999999999877889999999999954
No 6
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=99.97 E-value=8.1e-31 Score=219.58 Aligned_cols=136 Identities=24% Similarity=0.265 Sum_probs=76.5
Q ss_pred CcEEecCCccCCCCCeeeCCCEEEeCCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEE
Q 029155 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (198)
Q Consensus 8 ~~iV~PGd~l~~~~e~~~G~Gty~~~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~~~~~~~p~vGDiViG~V~~v 87 (198)
+++|+|||.|+. ++|.+|+|||.++++ |||+++|.+... +++..++|+|.+ .+|.|++||+|+|+|+++
T Consensus 9 ~~iV~PGd~l~~-~~~~~G~Gty~~~~~--I~Asv~G~v~~~-------~~~~~vsV~p~~-~~y~p~~GDiV~G~V~~v 77 (235)
T 2z0s_A 9 GRIVVPGEPLPE-EVEASPPYVIDYKGV--KRATVVGLLREK-------GDGGGRAFVKLK-EIYVPQAGDVVIGLIQSV 77 (235)
T ss_dssp --------------------------------------------------------------CCCCCCTTCCEEEEEEEE
T ss_pred CcEEeCCCCccc-CceEcCCCEEEECCE--EEEEEeEEEEEe-------CCccEEEEEeCC-CccCCCCCCEEEEEEEEE
Confidence 479999999996 669999999999988 999999998873 233579999986 469999999999999999
Q ss_pred ecceEEEEEeeeccccccCcceeEEecccccc--ccccccccccCCCCCCEEEEEEEEeCCCccEEEEEecCCCeee
Q 029155 88 MTRMASADIMCVGAKSVREKFSGIIRQQDVRA--TEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVV 162 (198)
Q Consensus 88 ~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~--~~~d~~~~~~~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lGvv 162 (198)
.+++|+|+| ..+++|+||+++++. ++.+..+|+++|++||+|+|+|+++++.+.+.||++++.||++
T Consensus 78 ~~~~~~V~I--------~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~~~lG~l 146 (235)
T 2z0s_A 78 GIMNWFVDI--------NSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGEGLGRI 146 (235)
T ss_dssp CSSEEEEEC--------SSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSSSCEEC
T ss_pred eCCeEEEEe--------CCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEecccCccc
Confidence 999999999 778999999999964 3345569999999999999999999877789999999999944
No 7
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.96 E-value=1.8e-29 Score=216.70 Aligned_cols=139 Identities=21% Similarity=0.209 Sum_probs=109.1
Q ss_pred CCcEEecCCccCCCC-----------------------Ceee--CCCEEEeCCceEEEEeEeeeEEEcCCCCCCCCCCCe
Q 029155 7 EMVLVTPGEVLGKAT-----------------------EVKA--GKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPT 61 (198)
Q Consensus 7 ~~~iV~PGd~l~~~~-----------------------e~~~--G~Gty~~~g~~~i~asv~G~v~~~~~~~~~~~~~~~ 61 (198)
-+++|+|||.|+..+ +|.+ |+|||.++++ |||+++|.++..... +....+.
T Consensus 38 ~~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~~~~~--I~as~aG~l~~~~~~--~~~~~~~ 113 (289)
T 2nn6_G 38 LGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCGDR--LLVTKCGRLRHKEPG--SGSGGGV 113 (289)
T ss_dssp GSSBCCSSEEECCSCSCCEECSSEEECC-----------------------CCC--EEECSCCEEEEECCT--TTSSCCE
T ss_pred CCcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEEECCE--EEEEEeEeEEeccCC--ccCccce
Confidence 357899999999876 7999 9999999999 999999999985210 0001148
Q ss_pred EEEecCCCCCCCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccc-cccccccccccCCCCCCEEEEE
Q 029155 62 VEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVR-ATEIDKVDMHLSFRPGDIVRAS 140 (198)
Q Consensus 62 i~V~p~~~~~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~-~~~~d~~~~~~~~~~GDiV~Ak 140 (198)
++|.|.+ .+|+|++||+|+|+|+++..++|.|+| ..++.|+||.++++ ++ .+|+++|++||+|+||
T Consensus 114 v~V~~~~-~rYiP~vGDiVIG~Vt~v~~~~~~VdI--------~s~~~a~L~~~~f~Gat----k~~r~~f~~GDlV~Ar 180 (289)
T 2nn6_G 114 YWVDSQQ-KRYVPVKGDHVIGIVTAKSGDIFKVDV--------GGSEPASLSYLSFEGAT----KRNRPNVQVGDLIYGQ 180 (289)
T ss_dssp EEEECCC-SSCCCCSSEEEEEEEEEEETTEEEEEC--------SSSSCCCEESCSSSCCS----SCSSSSSCTTCEEEEE
T ss_pred EEEEecC-CCCCCCCCCEEEEEEEEEeCcEEEEEE--------CCCceeEEehhhcCcch----hhhhhhcCCCCEEEEE
Confidence 8999986 579999999999999999999999999 56799999999987 33 2789999999999999
Q ss_pred EEEeCCCccEEEEE-----ecCCCeee
Q 029155 141 VLSLGDARAYFLST-----AKNDLGVV 162 (198)
Q Consensus 141 V~s~~~~~~~~LSt-----~~~~lGvv 162 (198)
|+++++...+.||+ ++++||+|
T Consensus 181 V~s~~~~~~~eLsc~~~~~k~~~lG~L 207 (289)
T 2nn6_G 181 FVVANKDMEPEMVCIDSCGRANGMGVI 207 (289)
T ss_dssp EEECCTTSCCEEECSBTTTTBCCCCSC
T ss_pred EEEcCCCCceEEEecccccccccCCEe
Confidence 99998777899999 99999998
No 8
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=99.73 E-value=2.3e-17 Score=132.31 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=74.5
Q ss_pred CCCCCCCCCEEEEEEEEEecceEEEEEeeeccccccC-cceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCCc
Q 029155 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDAR 148 (198)
Q Consensus 70 ~~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~-~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~ 148 (198)
++|+|++||+|+|+|+++..+.|+|+| .+ ++.|+||.+++... ..+|++.|++||+|+|||++++...
T Consensus 1 krY~P~~gDvViG~V~~v~~~~~~VdI--------~~~~~~a~L~~s~~~g~---~k~~r~~l~~GDlV~ArV~~~~~~~ 69 (175)
T 2ja9_A 1 KRYIPSVNDFVIGVIIGTFSDSYKVSL--------QNFSSSVSLSYMAFPNA---SKKNRPTLQVGDLVYARVCTAEKEL 69 (175)
T ss_dssp CCCCCCTTCEEEEEEEEECSSEEEEES--------STTSCCEEEETTSSTTC---CSSSCCCCCTTCEEEEEEEECCTTS
T ss_pred CCccCCCcCEEEEEEEEEECcEEEEEE--------CCCCccEEEEHHHCCch---hhhhhccCCCCCEEEEEEEEecCCC
Confidence 379999999999999999999999999 66 89999999998621 2379999999999999999998767
Q ss_pred cEEEE------EecCCCeeeE
Q 029155 149 AYFLS------TAKNDLGVVS 163 (198)
Q Consensus 149 ~~~LS------t~~~~lGvv~ 163 (198)
.+.|| +++++||++.
T Consensus 70 ~~~Ltc~~~~~~r~~~lG~L~ 90 (175)
T 2ja9_A 70 EAEIECFDSTTGRDAGFGILE 90 (175)
T ss_dssp CCEEESSCTTTCSCTTCEEEC
T ss_pred ceEEEecccccccccCCcCcC
Confidence 89999 9999999984
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.26 E-value=4.7e-11 Score=83.41 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=61.0
Q ss_pred CCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCC-ccEEE
Q 029155 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDA-RAYFL 152 (198)
Q Consensus 74 p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~-~~~~L 152 (198)
+++||++.|+|+++.+.+|+|+| ...+.|+||.+++...+. +.|++||.|.|+|++++.. +.+.|
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l--------~~~~~Gllh~sel~~~~~------~~~~~Gd~V~v~V~~vd~~~~~i~l 68 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINL--------NEQVRGLLRPRDMISLRL------ENLNVGDEIIVQAIDVRPEKREIDF 68 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEE--------ETTEEEEECGGGCSSCCG------GGCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEE--------CCCCEEEEEHHHCCcccc------eeeCCCCEEEEEEEEEECCCCEEEE
Confidence 68999999999999999999999 557899999999864331 7899999999999999854 78999
Q ss_pred EEecC
Q 029155 153 STAKN 157 (198)
Q Consensus 153 St~~~ 157 (198)
|++..
T Consensus 69 sl~~~ 73 (80)
T 2k52_A 69 KYIPL 73 (80)
T ss_dssp EECSC
T ss_pred EEeec
Confidence 98754
No 10
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.25 E-value=3.5e-11 Score=91.69 Aligned_cols=73 Identities=25% Similarity=0.293 Sum_probs=65.9
Q ss_pred CCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-CccEEE
Q 029155 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-ARAYFL 152 (198)
Q Consensus 74 p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~~~~~L 152 (198)
+++|++|.|+|++|.+.+|+|+| ...+.|+||++++...+.. ++.+.|++||.|.|+|++++. .+.+.|
T Consensus 5 ~~vG~iv~G~V~~i~~~G~FV~l--------~~~~~Glihisel~~~~~~--~~~~~~~vGd~V~vkV~~vd~~~~kI~L 74 (130)
T 2k4k_A 5 FEVGSVYTGKVTGLQAYGAFVAL--------DEETQGLVHISEVTHGFVK--DINEHLSVGDEVQVKVLAVDEEKGKISL 74 (130)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEE--------ETTEEEEEEGGGTSSSCCS--CGGGTCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEEEEeCCeEEEEE--------CCCcEEEEEHHHCCccccc--CccccCCCCCEEEEEEEEEeCCCCEEEE
Confidence 68999999999999999999999 5679999999999876655 788999999999999999975 678999
Q ss_pred EEec
Q 029155 153 STAK 156 (198)
Q Consensus 153 St~~ 156 (198)
|++.
T Consensus 75 Slk~ 78 (130)
T 2k4k_A 75 SIRA 78 (130)
T ss_dssp ESHH
T ss_pred EEee
Confidence 9975
No 11
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.22 E-value=8.4e-11 Score=87.64 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=68.5
Q ss_pred eEEEecCCCCCCCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccc-cccccccccCCCCCCEEEE
Q 029155 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRAT-EIDKVDMHLSFRPGDIVRA 139 (198)
Q Consensus 61 ~i~V~p~~~~~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~-~~d~~~~~~~~~~GDiV~A 139 (198)
.+.+.|.....+.+++|+++.|+|+++.+.+++|+| ...+.|+||++++... +.. ++.+.|++||.|.+
T Consensus 15 ~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l--------~~~~~Glvhisel~~~~~~~--~~~~~~~vGd~V~v 84 (115)
T 2khi_A 15 VPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI--------EEGVEGLVHVSEMDWTNKNI--HPSKVVNVGDVVEV 84 (115)
T ss_dssp ------CCCSSCSSCSSCEEEEEEEEEETTEEEEEC--------STTCEEEEETTSSSCSSTTC--SSTTTCCTTCEEEE
T ss_pred hcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEE--------CCCCEEEEEHHHCCcccccc--CcccEECCCCEEEE
Confidence 456667665556799999999999999999999999 5679999999999642 222 67889999999999
Q ss_pred EEEEeCC-CccEEEEEecC
Q 029155 140 SVLSLGD-ARAYFLSTAKN 157 (198)
Q Consensus 140 kV~s~~~-~~~~~LSt~~~ 157 (198)
+|++++. .+.+.||++..
T Consensus 85 kV~~vd~~~~rI~lslk~~ 103 (115)
T 2khi_A 85 MVLDIDEERRRISLGLKQC 103 (115)
T ss_dssp EEEEEETTTTEEEECCCCC
T ss_pred EEEEEECCCCEEEEEEEec
Confidence 9999975 46899998853
No 12
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=5.6e-11 Score=87.02 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=63.5
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEecccc-ccccccccccccCCCCCCEEEEEEEEeCCCccE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDV-RATEIDKVDMHLSFRPGDIVRASVLSLGDARAY 150 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v-~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~~~ 150 (198)
..+++|+++.|+|++|.+++|+|+|... ....+|+||++++ ...+.. ++.+.|++||.|.++|++++. +.+
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~-----~~~~~Glvhisel~~~~~~~--~~~~~~~~Gd~V~VkV~~vd~-~~i 79 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGL-----RKRWEGLVHISELRREGRVA--NVADVVSKGQRVKVKVLSFTG-TKT 79 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSS-----SSCCEEEECGGGTSSSSCCC--CHHHHCCTTCEEEEEEEEEET-TEE
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCC-----CCCeEEEEEHHHCCCCcccC--CcccEeCCCCEEEEEEEEEEC-Cee
Confidence 4589999999999999999999999210 0268999999999 333333 677899999999999999976 579
Q ss_pred EEEEec
Q 029155 151 FLSTAK 156 (198)
Q Consensus 151 ~LSt~~ 156 (198)
.||++.
T Consensus 80 ~LSlk~ 85 (103)
T 2eqs_A 80 SLSMKD 85 (103)
T ss_dssp EEESTT
T ss_pred EEEEee
Confidence 999886
No 13
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.20 E-value=4.2e-11 Score=88.35 Aligned_cols=77 Identities=23% Similarity=0.369 Sum_probs=66.8
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCC-cc
Q 029155 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDA-RA 149 (198)
Q Consensus 71 ~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~-~~ 149 (198)
...+++||+|.|+|+++.+++|+|+| ...+.|+||.+++...+.+ ++.+.|++||.|.|+|++++.. +.
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~G~fV~l--------~~~~~Gll~~sel~~~~~~--~~~~~~~vGd~V~v~V~~vd~~~~k 95 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAKGATVEL--------ADGVEGYLRASEASRDRVE--DATLVLSVGDEVEAKFTGVDRKNRA 95 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSSCEEEEC--------STTCBCCBCTTCCCSSSSS--SGGGSCCTTCEEEEEEEEEETTTTE
T ss_pred hhcCCCCCEEEEEEEEEECCeEEEEE--------CCCCEEEEEHHHcCccccc--ChhhccCCCCEEEEEEEEEECCCCE
Confidence 34689999999999999999999999 5678999999999765554 7789999999999999999753 57
Q ss_pred EEEEEecC
Q 029155 150 YFLSTAKN 157 (198)
Q Consensus 150 ~~LSt~~~ 157 (198)
+.||++..
T Consensus 96 i~LS~k~~ 103 (109)
T 2khj_A 96 ISLSVRAK 103 (109)
T ss_dssp EEEETTSS
T ss_pred EEEEEeec
Confidence 99998763
No 14
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.20 E-value=7.1e-11 Score=95.00 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-CccE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-ARAY 150 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~~~~ 150 (198)
+.|++||+|.|+|++|++.+|+|+|.. ..+.+|+||+|+++..+.. ++++.|++||.|.|+|++++. .+.+
T Consensus 11 ~~p~~G~iv~G~V~~I~~fGaFV~L~e------~~g~eGLvhiSels~~~v~--~~~~~~~vGd~V~VkVl~vD~~~~rI 82 (182)
T 1kl9_A 11 KFPEVEDVVMVNVRSIAEMGAYVSLLE------YNNIEGMILLSELSRRRIR--SINKLIRIGRNECVVVIRVDKEKGYI 82 (182)
T ss_dssp SSCCTTCEEEEEEEEECSSEEEEEETT------TTTEEEEEEGGGC--------------CTTCEEEEEEEEEETTTTEE
T ss_pred cCCCCCCEEEEEEEEEeccEEEEEEcc------CCCcEEEEEHHHCCCcccC--CHHHhcCCCCEEEEEEEEEECCCCEE
Confidence 457999999999999999999999920 1358999999999876665 789999999999999999974 5679
Q ss_pred EEEEecCC
Q 029155 151 FLSTAKND 158 (198)
Q Consensus 151 ~LSt~~~~ 158 (198)
.||++...
T Consensus 83 ~LSlk~~~ 90 (182)
T 1kl9_A 83 DLSKRRVS 90 (182)
T ss_dssp EEESTTCC
T ss_pred EEEEeecC
Confidence 99998653
No 15
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.18 E-value=1.2e-10 Score=93.11 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=61.6
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeecccccc--CcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-Cc
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-AR 148 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~--~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~~ 148 (198)
+.|++||+|.|+|++|.+.+|+|+| . ...+|+||+|+++..+.. ++++.|++||.|.|+|++++. .+
T Consensus 11 ~~p~~G~iv~G~V~~i~~fGaFV~L--------~e~~gveGLvhiSels~~~v~--~~~~~~~vGd~V~vkVl~vd~~~~ 80 (175)
T 2a19_A 11 KYPEIDDIVMVNVQQIAEMGAYVKL--------LEYDNIEGMILLSELSRRRIR--SIQKLIRVGKNDVAVVLRVDKEKG 80 (175)
T ss_dssp SSCCTTCEEEEEEEEEETTEEEEEE--------TTTTTCEEEEECC----------CCCCCCCTTSEEEEEEEEEETTTT
T ss_pred cCCCCCCEEEEEEEEEecceEEEEE--------cCCCCcEEEEEHHHcCCcccC--CHHHcCCCCCEEEEEEEEEECCCC
Confidence 5688999999999999999999999 3 468999999999876655 788999999999999999974 56
Q ss_pred cEEEEEecCC
Q 029155 149 AYFLSTAKND 158 (198)
Q Consensus 149 ~~~LSt~~~~ 158 (198)
.+.||++...
T Consensus 81 ~I~LSlk~~~ 90 (175)
T 2a19_A 81 YIDLSKRRVS 90 (175)
T ss_dssp EEEEESTTCC
T ss_pred eEEEEEEecC
Confidence 7999998653
No 16
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.6e-11 Score=88.60 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=65.6
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEeeeccccccC-cceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCC--
Q 029155 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDA-- 147 (198)
Q Consensus 71 ~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~-~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~-- 147 (198)
.+.|++|+++.|+|++|.+++|+|+| .. ...|+||++++...+.+ ++.+.|++||.|.|+|++++..
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l--------~g~~~~Glvhisel~~~~~~--~~~~~~~~Gd~V~VkV~~vd~~~~ 86 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKI--------PGCRKQGLVHRTHMSSCRVD--KPSEIVDVGDKVWVKLIGREMKND 86 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEEC--------TTCSSCEEEEHHHHCSSCCS--CHHHHCCTTCEEEEEEEEEEECSS
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEE--------CCCcEEEEEEHHHCCccccc--ChhhcCCCCCEEEEEEEEEecccc
Confidence 46789999999999999999999999 32 36999999999766554 7788999999999999999732
Q ss_pred -ccEEEEEecC
Q 029155 148 -RAYFLSTAKN 157 (198)
Q Consensus 148 -~~~~LSt~~~ 157 (198)
+.+.||++..
T Consensus 87 ~~~i~LSlk~~ 97 (119)
T 2cqo_A 87 RIKVSLSMKVV 97 (119)
T ss_dssp CEEEEEESTTB
T ss_pred CceEEEEEeec
Confidence 4799998864
No 17
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.08 E-value=2.4e-10 Score=81.54 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=62.5
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccC--cceeEEecc-ccccccccccccccCCCCCCEEEEEEEEeCC-C
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE--KFSGIIRQQ-DVRATEIDKVDMHLSFRPGDIVRASVLSLGD-A 147 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~--~~~G~l~~s-~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~ 147 (198)
-.|++|+++.|+|+ +.+.+|+|+| .. ..+|++|+| +++..+.. ++++.| +||.|.++|++++. .
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel--------~~~~~~eGLvhis~el~~~~~~--~~~~~~-~Gd~V~VkV~~vd~~~ 74 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYL--------FDYPHFEAILAESVKMHMDRYV--EYRDKL-VGKTVKVKVIRVDYTK 74 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEE--------TTCTTSEEEEGGGSSCCHHHHH--HHHHHH-TTCEEEEEEEEEETTT
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEE--------CCCCCeEEEEEeeHHhCccccc--CHhHEe-CCCEEEEEEEEEECCC
Confidence 34899999999999 9999999999 32 589999999 99755544 667888 99999999999975 5
Q ss_pred ccEEEEEec
Q 029155 148 RAYFLSTAK 156 (198)
Q Consensus 148 ~~~~LSt~~ 156 (198)
+.+.||++.
T Consensus 75 ~kI~lslk~ 83 (88)
T 1luz_A 75 GYIDVNYKR 83 (88)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEee
Confidence 789999875
No 18
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.05 E-value=6.4e-10 Score=89.21 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=68.1
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEecccccccccc--c-------cccccCCCCCCEEEEEEE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID--K-------VDMHLSFRPGDIVRASVL 142 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d--~-------~~~~~~~~~GDiV~AkV~ 142 (198)
+.|.+|+++.|+|+++.+.+++|+| . +++|++|++++...+.. . .+..+.|++||.|+++|+
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l--------~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~ 147 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRL--------G-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIV 147 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC--------S-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEE
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEE--------c-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEE
Confidence 4589999999999999999999999 3 38999999998643321 0 145688999999999999
Q ss_pred EeCCC------ccEEEEEecCCCeee
Q 029155 143 SLGDA------RAYFLSTAKNDLGVV 162 (198)
Q Consensus 143 s~~~~------~~~~LSt~~~~lGvv 162 (198)
+++.. ..+.||++++.||++
T Consensus 148 ~vd~~~~~p~~~~I~lS~k~~~LG~~ 173 (187)
T 1go3_E 148 AISLKAERKRGSKIALTMRQPYLGKL 173 (187)
T ss_dssp EEECCC-----CEEEEECCSTTCEEH
T ss_pred EEEcccCCCCccEEEEEEcCCCCCcH
Confidence 99742 379999999999986
No 19
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.04 E-value=1.1e-09 Score=93.18 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=67.4
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEeeecccccc--CcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-C
Q 029155 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-A 147 (198)
Q Consensus 71 ~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~--~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~ 147 (198)
.+.|++||+|.|+|+++.+.+|+|+| . .+..|+||+|+++..+.. ++++.|++||.|.++|++++. .
T Consensus 6 ~~~p~~Gdiv~G~V~~I~~fGaFV~L--------~e~~gieGlIhiSels~~~v~--~~~~~~kvGd~V~vkVi~vD~~~ 75 (275)
T 3aev_A 6 REYPEEGEFVVATVKRIHNYGAFLEL--------DEYPGKEAFMHISEVASTWVR--NIRDYLKEGQKVVAKVIRVDPRK 75 (275)
T ss_dssp -CCCCTTCEEEEEEEEEETTEEEEEE--------TTSTTCEEEEEGGGSCSSCCS--CGGGTCCTTCEEEEEEEEEETTT
T ss_pred ccCCCCCCEEEEEEEEEECcEEEEEE--------CCCCCeEEEEEHHHcCccccc--CHHhccCCCCEEEEEEEEEECCC
Confidence 35689999999999999999999999 4 368999999999866655 788999999999999999975 5
Q ss_pred ccEEEEEecC
Q 029155 148 RAYFLSTAKN 157 (198)
Q Consensus 148 ~~~~LSt~~~ 157 (198)
+.+.||++..
T Consensus 76 ~~I~LSlk~~ 85 (275)
T 3aev_A 76 GHIDLSLRRV 85 (275)
T ss_dssp TEEEEESTTC
T ss_pred CEEEEEEeec
Confidence 7899999874
No 20
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.96 E-value=2.2e-09 Score=92.69 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=66.8
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeecccccc--CcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-Cc
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-AR 148 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~--~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~~ 148 (198)
..|++||+|.|+|++|.+++|+|+| . .+..|+||+|+++..+.. ++.+.|++||.|.++|++++. .+
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L--------~ey~gveGLvhiSels~~~i~--~~~~~~kvGd~V~VkVl~vD~~~~ 78 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSL--------LEYNNIEGMIHLSELSRRRIR--SINKLIRIGRNECVKVIRVDKEKG 78 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEES--------CTTTSCCEEECGGGTSCSSCS--CCTTTCSSSCEEEEEEEEEETTTT
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEE--------CCCCCeEEEEEhHHcCccccc--CHHHhcCCCCEEEEEEEEEeCCCC
Confidence 3578999999999999999999999 4 468999999999865554 788999999999999999975 57
Q ss_pred cEEEEEecC
Q 029155 149 AYFLSTAKN 157 (198)
Q Consensus 149 ~~~LSt~~~ 157 (198)
.+.||++..
T Consensus 79 rI~LSlK~~ 87 (308)
T 1q8k_A 79 YIDLSKRRV 87 (308)
T ss_dssp EEEEECSSC
T ss_pred EEEEEEEec
Confidence 899999865
No 21
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.96 E-value=1.9e-09 Score=80.54 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=65.7
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-CccEE
Q 029155 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-ARAYF 151 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~~~~~ 151 (198)
-+++|+++.|+|++|.+++|+|+|. .....|+++.++..... ...+..+.|++||.|.++|++++. .+.+.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~-------~~~~~~l~~~~~~~~~~-~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~ 89 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIG-------VDGTRAFLPLLKAQEYI-RQKNKGAKLKVGQYLNCIVEKVKGNGGVVS 89 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECC-------CSSCEEEEEHHHHHHHH-HHHSSSCCCCTTCEEEEEEEECCTTSCEEE
T ss_pred cCCCCCEEEEEEEEEeCceEEEEEC-------CCCeEEEEEEecccccc-cccCccCEeCCCCEEEEEEEEEeCCCCEEE
Confidence 4799999999999999999999992 12345666555432111 111567899999999999999985 46899
Q ss_pred EEEecCCCeeeEEec
Q 029155 152 LSTAKNDLGVVSAES 166 (198)
Q Consensus 152 LSt~~~~lGvv~a~~ 166 (198)
||++..++|.-.+..
T Consensus 90 Lslk~~~l~~~~~~~ 104 (119)
T 1wi5_A 90 LSVGHSEVSTAIATE 104 (119)
T ss_dssp EECCCCCSCCCCCCS
T ss_pred EEEchhhcccceeec
Confidence 999999999766554
No 22
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.94 E-value=5.3e-09 Score=83.40 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=67.0
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEecccccccccc--c-------cccccCCCCCCEEEEEEE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID--K-------VDMHLSFRPGDIVRASVL 142 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d--~-------~~~~~~~~~GDiV~AkV~ 142 (198)
..|.+|+++.|+|+++++.+++|++ . +++|++|++++...+.. . .+-.+.|++||.|++||+
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l--------~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~ 147 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNL--------G-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVI 147 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC--------S-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEE
T ss_pred eeccCCCEEEEEEeeeccceEEEEE--------C-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEE
Confidence 4589999999999999999999998 3 58999999998754321 0 134578999999999999
Q ss_pred EeCC-----CccEEEEEecCCCeee
Q 029155 143 SLGD-----ARAYFLSTAKNDLGVV 162 (198)
Q Consensus 143 s~~~-----~~~~~LSt~~~~lGvv 162 (198)
+++. ...+.||++++.||.+
T Consensus 148 ~v~~~~~~~~~rI~ls~k~~gLG~~ 172 (180)
T 4ayb_E 148 SVASTVTGRLPRIALTMRQPYLGKL 172 (180)
T ss_dssp EECC-------CEEEECCSTTCEEH
T ss_pred EEeCCCCcccCcEEEEcCCCCCCCC
Confidence 9973 2369999999999975
No 23
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.87 E-value=1.7e-09 Score=91.63 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=68.1
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEeeecccccc--CcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-C
Q 029155 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-A 147 (198)
Q Consensus 71 ~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~--~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~ 147 (198)
.+.|++||++.|+|+++.+.+|+|+| . ....|+||+|+++..+.. ++++.|++||.|.++|++++. .
T Consensus 6 ~~~~~vG~iv~G~V~~I~~~GaFV~l--------~e~~~~~GlihiSels~~~v~--~~~~~~~vGd~V~VkVi~vd~~~ 75 (266)
T 3cw2_C 6 SKLPSEGEILIATVKQVFDYGSYVSL--------DEYGGLQAFLPWSEVSSKWVK--NIRDVLKENRKVIVKVIRVDRRK 75 (266)
T ss_dssp SSSCCTTCEEEEEEEECCSSSBEEEE--------TTTTSEECBBCGGGSSCSSCC--CHHHHSCTTCEEEEEECCCCSSS
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEE--------cCCCCeEEEEEhHHcCccccc--CHHHhCcCCCEEEEEEEEEeCCC
Confidence 46789999999999999999999999 4 468999999999766655 788999999999999999975 5
Q ss_pred ccEEEEEecCC
Q 029155 148 RAYFLSTAKND 158 (198)
Q Consensus 148 ~~~~LSt~~~~ 158 (198)
+.+.||++...
T Consensus 76 g~I~LSlk~~~ 86 (266)
T 3cw2_C 76 GTVDVSLKKVT 86 (266)
T ss_dssp CCCBEESTTSC
T ss_pred CEEEEEEEecc
Confidence 78999998653
No 24
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.77 E-value=2.4e-08 Score=79.03 Aligned_cols=83 Identities=23% Similarity=0.176 Sum_probs=63.9
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccc-ccc---------ccccCCCCCCEEEEE
Q 029155 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI-DKV---------DMHLSFRPGDIVRAS 140 (198)
Q Consensus 71 ~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~-d~~---------~~~~~~~~GDiV~Ak 140 (198)
...|.+|+++.|+|+++++.+|+|+| . +++|++|++++...+. +.. .-.+.|++||.|++|
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l--------~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vk 146 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEI--------G-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLK 146 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEE--------T-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEE
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEE--------C-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEE
Confidence 34589999999999999999999999 3 5789999999853211 110 114579999999999
Q ss_pred EEEeCCC-c--cEEEEEecCCCeee
Q 029155 141 VLSLGDA-R--AYFLSTAKNDLGVV 162 (198)
Q Consensus 141 V~s~~~~-~--~~~LSt~~~~lGvv 162 (198)
|++++.. + ...-|++++.||.+
T Consensus 147 V~~vd~~~~~~~~igsm~~~~LG~~ 171 (172)
T 2c35_B 147 IVGTRVDKNDIFAIGSLMDDYLGLV 171 (172)
T ss_dssp EEEEEEETTEEEEEEECCSTTCEEC
T ss_pred EEEEEcCCCCcEEEEEecCCCCCCC
Confidence 9998632 2 23348999999986
No 25
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.69 E-value=5.8e-08 Score=76.87 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccc-ccccc-------ccCCCCCCEEEEEEEEe
Q 029155 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI-DKVDM-------HLSFRPGDIVRASVLSL 144 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~-d~~~~-------~~~~~~GDiV~AkV~s~ 144 (198)
.|.+|+++.|+|+++++.+++|+| .. .+|++|+|++...+. +..+. ++.|++||.|++||+++
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l--------~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQV--------GP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEE--------TT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEe--------cC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEE
Confidence 478999999999999999999999 44 899999999853211 11111 26799999999999998
Q ss_pred CC-C---ccEEEEEecCCCeee
Q 029155 145 GD-A---RAYFLSTAKNDLGVV 162 (198)
Q Consensus 145 ~~-~---~~~~LSt~~~~lGvv 162 (198)
+- . ..+. |++++.||.+
T Consensus 151 d~~~~~~~~ig-sm~~~~LG~~ 171 (171)
T 1y14_B 151 ISQVSSIHAIG-SIKEDYLGAI 171 (171)
T ss_dssp EEETTEEEEEE-ECCSTTCEEC
T ss_pred EcCCCCcEEEE-EcCCCCCCCC
Confidence 63 2 2344 7899999974
No 26
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.62 E-value=1.4e-07 Score=80.66 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCCCCCCEEEEEEEEEecceEEE-EEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-Ccc
Q 029155 72 PVPEPGSVVIARVTKVMTRMASA-DIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-ARA 149 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V-~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~~~ 149 (198)
.-.++||+|.|+|.++++.+++| +| ...+.|+||.||+. +.|++||.|.|+|+++++ .+.
T Consensus 148 ~~~~~G~~V~g~V~~i~~~G~fV~~i--------~~g~~Glih~SEl~----------~~l~~Gd~v~~~V~~id~~d~k 209 (285)
T 3go5_A 148 YNNMQNQNWPAIVYRLKLSGTFVYLP--------ENNMLGFIHPSERY----------AEPRLGQVLDARVIGFREVDRT 209 (285)
T ss_dssp CSCCTTCEEEEEEEEEETTEEEEEET--------TTTEEEEECGGGCS----------SCCCTTCEEEEEEEEEETTTTE
T ss_pred hhCCCCCEEEEEEEEEeCCcEEEEEe--------CCCeEEEEEHHHcc----------ccCCCCCEEEEEEEEEECCCCe
Confidence 34578999999999999999999 88 67899999999874 458999999999999986 678
Q ss_pred EEEEEecCCCeee
Q 029155 150 YFLSTAKNDLGVV 162 (198)
Q Consensus 150 ~~LSt~~~~lGvv 162 (198)
+.||++...+..+
T Consensus 210 I~LSlk~~~~~~~ 222 (285)
T 3go5_A 210 LNLSLKPRSFEML 222 (285)
T ss_dssp EEEECSCCCCCCC
T ss_pred EEEEeChhhhhcc
Confidence 9999998876543
No 27
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.59 E-value=5.6e-09 Score=99.14 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCCccEE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYF 151 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~~~~ 151 (198)
..|++|+++.|+|++|.+++|+|+| ....+|++|+|++...+.+ ++.+.|++||.|.+||++++..+.+.
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel--------~~g~eGLvHiSels~~rv~--~~~d~~kvGD~V~VkVi~iD~~grI~ 702 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNF--------FGAKDGLVHVSQISNERVA--KPSDVLKEGQMVKVKLLGFDDRGKTK 702 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEE--------CCCcEEEEEHHHcCccccc--CccccCCCCCEEEEEEEEECCCCcEE
Confidence 3589999999999999999999999 5578999999999876666 78899999999999999998667899
Q ss_pred EEEec
Q 029155 152 LSTAK 156 (198)
Q Consensus 152 LSt~~ 156 (198)
||++.
T Consensus 703 LS~K~ 707 (726)
T 4aid_A 703 LSMKV 707 (726)
T ss_dssp -----
T ss_pred EEEee
Confidence 99885
No 28
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.58 E-value=4.3e-08 Score=77.81 Aligned_cols=81 Identities=22% Similarity=0.113 Sum_probs=64.2
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEecccccccccc-c-------cccccCCCCCCEEEEEEEE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID-K-------VDMHLSFRPGDIVRASVLS 143 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d-~-------~~~~~~~~~GDiV~AkV~s 143 (198)
..|.+|+++.|+|+++++.+++|++ . +++|++|++++...+.. . .+..+.|++||.|++||++
T Consensus 80 f~p~~Gev~~G~V~~v~~fG~FV~l--------~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~ 150 (172)
T 3h0g_G 80 WRPFRGEVVDAIVTTVNKMGFFANI--------G-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVG 150 (172)
T ss_dssp ECCCTTCEEECCCCEEETTEEECCB--------T-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEE
T ss_pred eccCCCCEEEEEEEEEEcceEEEEe--------C-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEE
Confidence 4589999999999999999999999 3 57899999998533211 0 1224689999999999999
Q ss_pred eCCC----ccEEEEEecCCCeee
Q 029155 144 LGDA----RAYFLSTAKNDLGVV 162 (198)
Q Consensus 144 ~~~~----~~~~LSt~~~~lGvv 162 (198)
++.. ..+. |++++.||.+
T Consensus 151 vd~~~~~~~~Ig-tm~~~~LG~~ 172 (172)
T 3h0g_G 151 TRTDATEIFAIA-TMKEDYLGVL 172 (172)
T ss_dssp EEESSSCEEEEE-ECCSTTCEEC
T ss_pred EECCCCCceEEE-EcCCCCCCCC
Confidence 8732 2466 8899999975
No 29
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.58 E-value=1.2e-07 Score=77.93 Aligned_cols=84 Identities=14% Similarity=0.056 Sum_probs=64.3
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccc-ccccc-------ccCCCCCCEEEEEEEE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI-DKVDM-------HLSFRPGDIVRASVLS 143 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~-d~~~~-------~~~~~~GDiV~AkV~s 143 (198)
..|++|+++.|+|+++++.+++|+| .. .+|++|++++...+. +..+. ++.|++||.|++||++
T Consensus 79 ~~p~vGev~~G~V~~vt~fG~FVel--------g~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 79 FKPFKGEVVDGTVVSCSQHGFEVQV--------GP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (215)
T ss_dssp ECCCTTEEEEEEEEEEETTEEEEEC--------TT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEE
T ss_pred eccCCCCEEEEEEEEEecceEEEEe--------cC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEE
Confidence 4489999999999999999999999 44 899999999863321 11111 2679999999999999
Q ss_pred eCCC----ccEEEEEecCCCeeeEEe
Q 029155 144 LGDA----RAYFLSTAKNDLGVVSAE 165 (198)
Q Consensus 144 ~~~~----~~~~LSt~~~~lGvv~a~ 165 (198)
++.. ..+. |++++.||.+.+.
T Consensus 150 vd~~~~~i~~Ig-Smk~~~LG~~~~~ 174 (215)
T 2b8k_G 150 CISQVSSIHAIG-SIKEDYLGAISHE 174 (215)
T ss_dssp EEEETTEEEEEE-ECCSTTCEEC---
T ss_pred EEcCCCccEEEE-EcCCCCCCCcchh
Confidence 8732 2466 8999999998643
No 30
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.55 E-value=8.4e-08 Score=95.46 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEecccccccc-ccccccccCCCCCCEEEEEEEEeC-CCcc
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATE-IDKVDMHLSFRPGDIVRASVLSLG-DARA 149 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~-~d~~~~~~~~~~GDiV~AkV~s~~-~~~~ 149 (198)
-.+++|++|.|+|++|.+++++|+| .....|++|+|+++..+ .. +..+.|++||.|.|+|++++ +.+.
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L--------~~gveGLVHiSelsd~~~v~--~p~~v~kvGd~V~vkVl~VD~~~~r 967 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTT--------NSEVECVVNAQRHAGAQLRR--PANEIYEIGKTYPAKVIYIDYANIT 967 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEEC--------TTSCEEEECTTSSSSTTSCS--CSTTTSCTTCEEEEEEEEEEGGGTE
T ss_pred hhCCCCCEEEEEEEEEecceEEEEe--------CCCceEEEEHHHcCCCcccC--CHHHcCCCCCEEEEEEEEEECCCCE
Confidence 4579999999999999999999999 56789999999998655 33 67899999999999999997 4578
Q ss_pred EEEEEecCCCe
Q 029155 150 YFLSTAKNDLG 160 (198)
Q Consensus 150 ~~LSt~~~~lG 160 (198)
+.||++..++-
T Consensus 968 I~LSlk~~dl~ 978 (1219)
T 3psi_A 968 AEVSLLDHDVK 978 (1219)
T ss_dssp EEEECCHHHHC
T ss_pred EEEEecHHHhc
Confidence 99999987663
No 31
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.39 E-value=3.8e-08 Score=96.51 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEecccccccc-ccccccccCCCCCCEEEEEEEEeC-CCcc
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATE-IDKVDMHLSFRPGDIVRASVLSLG-DARA 149 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~-~d~~~~~~~~~~GDiV~AkV~s~~-~~~~ 149 (198)
--+++|++|.|+|++|.+++++|+| .....|++|+|+++..+ .. +..+.|++||.|.|+|++++ +.+.
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L--------~~gveGLVHiSelsd~~~v~--~~~~v~kvGd~V~vkVl~VD~~~~r 970 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTT--------NSEVECVVNAQRHAGAQLRR--PANEIYEIGKTYPAKVIYIDYANIT 970 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEe--------CCCcEEEEEHHHcCCCcccC--CHHHcCCCCCEEEEEEEEEECCCCE
Confidence 3578999999999999999999999 55789999999998654 33 67899999999999999998 4578
Q ss_pred EEEEEecCCCe
Q 029155 150 YFLSTAKNDLG 160 (198)
Q Consensus 150 ~~LSt~~~~lG 160 (198)
+.||++..++-
T Consensus 971 I~LSlk~~dl~ 981 (1030)
T 3psf_A 971 AEVSLLDHDVK 981 (1030)
T ss_dssp -----------
T ss_pred EEEEechHHhc
Confidence 99999988773
No 32
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.37 E-value=4.5e-08 Score=93.03 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCCccEE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYF 151 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~~~~ 151 (198)
..+++|+++.|+|+++.+++++|+| .....|++|+|++...+.. +..+.|++||.|.+||++++..+.+.
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel--------~~g~eGLvHiSel~~~~v~--~~~~~~~vGd~V~VkVi~vd~~grI~ 692 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAI--------GGGKEGLVHISQIADKRVE--KVTDYLQMGQEVPVKVLEVDRQGRIR 692 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEe--------CCCceEEEEHHHcCCcccc--CcccccCCCCEEEEEEEEECCCCcEE
Confidence 3579999999999999999999999 4568999999999866655 78899999999999999998667899
Q ss_pred EEEec
Q 029155 152 LSTAK 156 (198)
Q Consensus 152 LSt~~ 156 (198)
||++.
T Consensus 693 LS~k~ 697 (723)
T 3cdi_A 693 LSIKE 697 (723)
T ss_dssp -----
T ss_pred EEEEe
Confidence 99885
No 33
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.36 E-value=1.6e-07 Score=89.91 Aligned_cols=76 Identities=25% Similarity=0.252 Sum_probs=66.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-CccEE
Q 029155 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-ARAYF 151 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~~~~~ 151 (198)
-+++|+++.|+|++|.+++++|+| ....+|++|+|++...+.. +..+.|++||.|.++|++++. .+.+.
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l--------~~~~eGLVhiS~Lsd~~v~--d~~~~~~vGd~V~VkVi~VD~~~~rI~ 720 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDI--------GVHQDGLVHISALSEKFVK--DPYEVVKAGDIVKVKVMEVDIPRNRVG 720 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEEC--------SSSSEEEEETTTSCSSCCS--CHHHHCCTTCCCCCBEEEEETTTTEEE
T ss_pred hcCCCCEEEEEEEEEecCCeEEEe--------CCCcEEEEEHHHcCccccC--ChhheeCCCCEEEEEEEEEECCCCEEE
Confidence 478999999999999999999999 4567999999999865554 678999999999999999974 57899
Q ss_pred EEEecCC
Q 029155 152 LSTAKND 158 (198)
Q Consensus 152 LSt~~~~ 158 (198)
||++..+
T Consensus 721 LSlk~~~ 727 (785)
T 3bzc_A 721 LSMRMSD 727 (785)
T ss_dssp ECCSSCC
T ss_pred EEEecCC
Confidence 9998765
No 34
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.29 E-value=2.4e-06 Score=69.44 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=63.0
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccc--cc---------------cccccCCCCC
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI--DK---------------VDMHLSFRPG 134 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~--d~---------------~~~~~~~~~G 134 (198)
..|.+|+++.|+|++++..+++|++ . .++|++|++++...+. |. .+-...|++|
T Consensus 77 f~p~~GEv~~G~Vs~vt~~GifV~l--------g-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~G 147 (203)
T 3ayh_B 77 FRPFRGEVMLGKIKSCSEEGIRVTI--------S-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDID 147 (203)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC--------S-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTT
T ss_pred EccCCCCEEEEEEEEEeccEEEEEE--------e-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCC
Confidence 4489999999999999999999999 3 5789999998753221 00 1235679999
Q ss_pred CEEEEEEEEeCCC------------------------ccEEEEEecCCCeee
Q 029155 135 DIVRASVLSLGDA------------------------RAYFLSTAKNDLGVV 162 (198)
Q Consensus 135 DiV~AkV~s~~~~------------------------~~~~LSt~~~~lGvv 162 (198)
|.|+.||.+++-. ..+.+|++++.||.+
T Consensus 148 d~VrvrV~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~~ 199 (203)
T 3ayh_B 148 EEIRFQIESEDFVDISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGIP 199 (203)
T ss_dssp CEEEEEEEEEEECC--------------------CCSEEEEEEBCSTTCBCG
T ss_pred CEEEEEEEEEEccccCCCCccccccccccccccCCCCeEEEEEecCCCCcee
Confidence 9999999997521 117888888888875
No 35
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.23 E-value=6.1e-08 Score=92.56 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=36.8
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEecccc----ccccccccccccCCCCCCEEEEEEEEeCCC
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDV----RATEIDKVDMHLSFRPGDIVRASVLSLGDA 147 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v----~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~ 147 (198)
..+++|+++.|+|+++.+++++|+| .....|+||+|++ ...+.. +..+.|++||.|.++|++++..
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l--------~~g~eGLvHiSel~~~~s~~rv~--~~~~~~~vGd~V~VkVi~vd~~ 732 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSL--------LPGKDGLLHISQIRKLAGGKRVE--NVEDVLGVGQKVQVEIAEIDSR 732 (757)
T ss_dssp ----------CBEEECC-CSCEECC--------C---CCCCC---------------------CCSSCBCCCCCCCCCSS
T ss_pred hhcccccEEEEEEEEccccEEEEEE--------cCCcEEEEEhHHhccccCCCccc--CcccccCCCCEEEEEEEEECCC
Confidence 4579999999999999999999999 5578999999999 655554 7889999999999999999866
Q ss_pred ccEEEEEecC
Q 029155 148 RAYFLSTAKN 157 (198)
Q Consensus 148 ~~~~LSt~~~ 157 (198)
+.+.||++..
T Consensus 733 grI~LS~k~~ 742 (757)
T 1e3p_A 733 GKLSLIPVIE 742 (757)
T ss_dssp CC--------
T ss_pred CCEEEEEecC
Confidence 7799998753
No 36
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.05 E-value=1e-05 Score=70.78 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=57.9
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCC---
Q 029155 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDA--- 147 (198)
Q Consensus 71 ~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~--- 147 (198)
.|..+.||+|.|+|.++.++.++|+| . ...|+||.++.. ..+.|++||.|+|.|.++++.
T Consensus 129 e~~~~~GeIV~G~V~ri~~~~v~VDl--------G-k~EgiLp~sE~i--------p~E~~~vGD~Vkv~V~~V~~~~kg 191 (344)
T 1hh2_P 129 KYSELKGTVTTAEVIRVMGEWADIRI--------G-KLETRLPKKEWI--------PGEEIKAGDLVKVYIIDVVKTTKG 191 (344)
T ss_dssp CTTCCTTCEEEEEEEEECSSEEEEEE--------T-TEEEEEEGGGSC--------TTCCCCTTCEEEEEEEEEEEETTE
T ss_pred HHhhcCCCEEEEEEEEEecCcEEEEe--------C-CeEEEEeHHHcC--------CCcCCCCCCEEEEEEEEEEcCCCC
Confidence 35567999999999999999999999 4 689999999874 247899999999999999732
Q ss_pred ccEEEEEecC
Q 029155 148 RAYFLSTAKN 157 (198)
Q Consensus 148 ~~~~LSt~~~ 157 (198)
.++.||-..+
T Consensus 192 ~~I~LSRt~p 201 (344)
T 1hh2_P 192 PKILVSRRVP 201 (344)
T ss_dssp EEEEEESSSH
T ss_pred cEEEEEeecc
Confidence 3577777654
No 37
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.00 E-value=8.7e-06 Score=68.17 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=59.1
Q ss_pred CCCCCCCEEEEEEEE----EecceEEEEEeeeccccccC---cceeEEeccccccccccccccccCCCCCCEEEEEEEEe
Q 029155 72 PVPEPGSVVIARVTK----VMTRMASADIMCVGAKSVRE---KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSL 144 (198)
Q Consensus 72 ~~p~vGDiViG~V~~----v~~~~~~V~I~~v~~~~l~~---~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~ 144 (198)
|.-++||+|.|+|.+ +..+.++|+| .. ..+|+|+.++.. ..+.|++||.|+|.|..+
T Consensus 3 ~~~r~GeIVtG~V~r~~~~v~~~~ViVdl--------G~~~~k~EgiLP~~Eqi--------p~E~~~~GDrIkayV~~V 66 (251)
T 2asb_A 3 FSTREGEIVAGVIQRDSRANARGLVVVRI--------GTETKASEGVIPAAEQV--------PGESYEHGNRLRCYVVGV 66 (251)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEE--------CSSSSCEEEEECGGGSC--------TTCCCCTTCEEEEEEEEE
T ss_pred hhhcCCCEEEEEEEEccccccCCeEEEEe--------CCCCcceEEEEcHHHcC--------CCccCCCCCEEEEEEEEE
Confidence 567899999999999 8999999999 43 479999988753 257899999999999999
Q ss_pred CCC---ccEEEEEecCCC
Q 029155 145 GDA---RAYFLSTAKNDL 159 (198)
Q Consensus 145 ~~~---~~~~LSt~~~~l 159 (198)
.+. .++.||-..++|
T Consensus 67 ~~~~~gpqIiLSRt~p~l 84 (251)
T 2asb_A 67 TRGAREPLITLSRTHPNL 84 (251)
T ss_dssp ECCSSSCEEEEESSCHHH
T ss_pred EcCCCCCEEEEEeccHHH
Confidence 753 568888877654
No 38
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.82 E-value=2.6e-05 Score=68.62 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCCCCCCCEEEEEEEE----EecceEEEEEeeeccccccC---cceeEEeccccccccccccccccCCCCCCEEEEEEEE
Q 029155 71 GPVPEPGSVVIARVTK----VMTRMASADIMCVGAKSVRE---KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLS 143 (198)
Q Consensus 71 ~~~p~vGDiViG~V~~----v~~~~~~V~I~~v~~~~l~~---~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s 143 (198)
.|..++||+|.|+|.+ +..+.++|+| .. ..+|+||.++..+ .+.|++||-|+|.|.+
T Consensus 125 ef~~r~GeIVtG~V~r~~~~v~~~~v~VdL--------G~~~~k~EgiLP~~EqiP--------~E~~~~GDrVkvyV~~ 188 (366)
T 1k0r_A 125 EFSTREGEIVAGVIQRDSRANARGLVVVRI--------GTETKASEGVIPAAEQVP--------GESYEHGNRLRCYVVG 188 (366)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEE--------CCSSSCEEEEECGGGSCT--------TCCCCTTCEEEEEEEE
T ss_pred HHHhcCCCEEEEEEEEccccccCCeEEEEe--------CCCccceEEEEcHHHcCC--------CccCCCCCEEEEEEEE
Confidence 3567899999999999 9999999999 33 4799999988642 4789999999999999
Q ss_pred eCCC---ccEEEEEecCC
Q 029155 144 LGDA---RAYFLSTAKND 158 (198)
Q Consensus 144 ~~~~---~~~~LSt~~~~ 158 (198)
+.+. .++.||-..++
T Consensus 189 V~~~~kgpqI~LSRT~p~ 206 (366)
T 1k0r_A 189 VTRGAREPLITLSRTHPN 206 (366)
T ss_dssp EECCSSSCEEEEESSCHH
T ss_pred EecCCCccEEEEEeCChH
Confidence 9753 44777766554
No 39
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.68 E-value=0.00017 Score=66.10 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=60.1
Q ss_pred CCCCCCEEEEEEEEEecc--eEEEEEeeeccccccCcceeEEecccccccccc-------ccccccCCCCCCEEEEEEEE
Q 029155 73 VPEPGSVVIARVTKVMTR--MASADIMCVGAKSVREKFSGIIRQQDVRATEID-------KVDMHLSFRPGDIVRASVLS 143 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~--~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d-------~~~~~~~~~~GDiV~AkV~s 143 (198)
-+.+|++..|+|+++.+. .|||+| ..+-.|+||++|+...+.. ..++.+.+++||.|.++|..
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdi--------G~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~K 113 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDY--------GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDK 113 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEES--------SSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEE
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEe--------CCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEe
Confidence 368899999999999999 999999 6778899999998644311 22577899999999999999
Q ss_pred eCC-CccEEEEEe
Q 029155 144 LGD-ARAYFLSTA 155 (198)
Q Consensus 144 ~~~-~~~~~LSt~ 155 (198)
... +....||+.
T Consensus 114 e~~g~KGa~lTt~ 126 (517)
T 2bx2_L 114 EERGNKGAALTTF 126 (517)
T ss_dssp CCCTTCCCEEESS
T ss_pred eccccCCceEEee
Confidence 653 244667765
No 40
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00014 Score=59.60 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=52.5
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccc--cc----------cccccCCCCCCEEE
Q 029155 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI--DK----------VDMHLSFRPGDIVR 138 (198)
Q Consensus 71 ~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~--d~----------~~~~~~~~~GDiV~ 138 (198)
...|.+|+++.|+|++++..+++|++ ...++|++|++++...+. |. ..-...|++||.|+
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL--------~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~Vr 147 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSL--------LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIR 147 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEC--------TTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEE
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEc--------cCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEE
Confidence 34589999999999999999999999 446799999998753221 00 12246699999999
Q ss_pred EEEEEeC
Q 029155 139 ASVLSLG 145 (198)
Q Consensus 139 AkV~s~~ 145 (198)
+||.+++
T Consensus 148 vrV~~v~ 154 (218)
T 2ckz_B 148 FRIEREV 154 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999986
No 41
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.43 E-value=0.00074 Score=57.47 Aligned_cols=68 Identities=15% Similarity=0.037 Sum_probs=55.6
Q ss_pred CCCCCCEEEEEEEEEe-cceEEEEEeeeccccccC-cceeEEeccccccccccccccccCCCCCCEEEEEEEEeCCCccE
Q 029155 73 VPEPGSVVIARVTKVM-TRMASADIMCVGAKSVRE-KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAY 150 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~-~~~~~V~I~~v~~~~l~~-~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~~~~~ 150 (198)
..++|+++.|+|++++ +.+|+|++ .. ...|++|.++++... ...+.+||.+.+. +.++..+.+
T Consensus 66 ~~~~G~~~~g~V~~v~~~~GaFVdi--------G~~~~d~lvp~sel~~~~------~~~~~~Gd~v~v~-l~iD~~~Ri 130 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKDLGVFVDT--------GLPDKEIVVSLDILPELK------ELWPKKGDQLYIR-LEVDKKDRI 130 (285)
T ss_dssp CSCSSSCEEEEEEEEETTTEEEEEC--------SCTTCCEEEEGGGSCSSG------GGSCCTTCEEEEE-EEECTTSCE
T ss_pred cccCCCEEEEEEEEEccCceEEEEE--------CCCCcEEEEEHHHCCccc------ccccCCCCEEEEE-EEECCCCcE
Confidence 3588999999999999 79999999 55 478999999986532 2357999999655 688866789
Q ss_pred EEEEe
Q 029155 151 FLSTA 155 (198)
Q Consensus 151 ~LSt~ 155 (198)
.||++
T Consensus 131 ~ls~k 135 (285)
T 3go5_A 131 WGLLA 135 (285)
T ss_dssp EEEEC
T ss_pred EEEeh
Confidence 99985
No 42
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=96.61 E-value=0.0018 Score=46.66 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEecccccccc
Q 029155 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATE 121 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~ 121 (198)
.|++|++|.+.|+++.+.+++|+| ....+|++|+|+++..+
T Consensus 58 ~l~~Ge~V~g~V~~i~~fG~fv~l--------~~~~eGlvhis~i~~~~ 98 (101)
T 2bh8_A 58 NPQQGDRVEGKIKSITDFGIFIGL--------DGGIDGLVHLSDISWAQ 98 (101)
T ss_dssp CCCTTCEEEEEEEECCSEEEEECT--------TSCEEEEEEEEEEEECC
T ss_pred CCCCCCEEEEEEEEeCCcEEEEEc--------CCCceEEEEHHHCccCc
Confidence 689999999999999999999999 55789999999987543
No 43
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=96.56 E-value=0.0053 Score=57.59 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCCCC--EEEEEEEEEecceEEEEEeeeccccccCcceeEEecccccc--cc--cc--cc----ccccCCCCCCEEEEEE
Q 029155 74 PEPGS--VVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRA--TE--ID--KV----DMHLSFRPGDIVRASV 141 (198)
Q Consensus 74 p~vGD--iViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~--~~--~d--~~----~~~~~~~~GDiV~AkV 141 (198)
.++|+ +..|+|++|++.+++|+|. ....+|++|++++.. .+ .+ .. .....|++||.|.++|
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~-------~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV 628 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLV-------DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEET-------TTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEE
T ss_pred hccCCCceEEEEEEEEeCCceEEEEc-------CCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEE
Confidence 56898 9999999999999999992 246899999999852 11 11 11 2246799999999999
Q ss_pred EEeCC-CccEEEEEe
Q 029155 142 LSLGD-ARAYFLSTA 155 (198)
Q Consensus 142 ~s~~~-~~~~~LSt~ 155 (198)
.+++. .+.+.|++.
T Consensus 629 ~~vd~~~~~I~~~l~ 643 (644)
T 2id0_A 629 AEVRMETRSIIARPV 643 (644)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEeCCCCEEEEEEc
Confidence 99974 467887764
No 44
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=95.84 E-value=0.042 Score=39.42 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=46.3
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccc---cccc-cccCCCCCCEEEEE
Q 029155 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI---DKVD-MHLSFRPGDIVRAS 140 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~---d~~~-~~~~~~~GDiV~Ak 140 (198)
.|..|+...+.|+++.++.+.+.+ .....+.|..++++.... .... ..+.|++||+|+.+
T Consensus 30 ~~~~~~~~~AvV~~v~~~~~~v~~--------~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 30 IGNSDDILAAVVLSATPGAVEAFR--------KNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp SCTTTTCEEEEEEEEETTEEEEEE--------TTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCccCCeEEEEEEEeCCCeEEEEE--------cCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 467799999999999999988877 444666788888764432 1124 67889999999998
No 45
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=95.75 E-value=0.012 Score=56.27 Aligned_cols=70 Identities=21% Similarity=0.144 Sum_probs=48.3
Q ss_pred CEEEEEEEEEecceEEEEEeeeccccccC-cceeEEeccccc--ccc--cc--cc-----c----cccCCCCCCEEEEEE
Q 029155 78 SVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRQQDVR--ATE--ID--KV-----D----MHLSFRPGDIVRASV 141 (198)
Q Consensus 78 DiViG~V~~v~~~~~~V~I~~v~~~~l~~-~~~G~l~~s~v~--~~~--~d--~~-----~----~~~~~~~GDiV~AkV 141 (198)
.+..|.|++|+.++++|.| .. ..+|++|++++. ..+ -+ .. . ....|++||.|.++|
T Consensus 671 ~~~~g~V~~V~~~G~fV~l--------~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV 742 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLV--------PKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQV 742 (760)
T ss_dssp SEEEEEEEEEETTEEEEEE--------TTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEE
T ss_pred eEEEEEEEEEECCeEEEEE--------eCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEE
Confidence 6899999999999999999 44 689999999884 111 01 00 1 247899999999999
Q ss_pred EEeCCC----ccEEEEEe
Q 029155 142 LSLGDA----RAYFLSTA 155 (198)
Q Consensus 142 ~s~~~~----~~~~LSt~ 155 (198)
.+++.. +.+.||++
T Consensus 743 ~~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 743 RSVMDPITSKRKAELLLK 760 (760)
T ss_dssp C--------CCEEEC---
T ss_pred EEEECccccCCcEEEEeC
Confidence 999743 56777753
No 46
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.028 Score=55.20 Aligned_cols=71 Identities=21% Similarity=0.144 Sum_probs=54.8
Q ss_pred CCEEEEEEEEEecceEEEEEeeeccccccC-cceeEEeccccc--ccc--ccc--cc---------cccCCCCCCEEEEE
Q 029155 77 GSVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRQQDVR--ATE--IDK--VD---------MHLSFRPGDIVRAS 140 (198)
Q Consensus 77 GDiViG~V~~v~~~~~~V~I~~v~~~~l~~-~~~G~l~~s~v~--~~~--~d~--~~---------~~~~~~~GDiV~Ak 140 (198)
|.+..|.|++|+.++++|.| .. +.+|++|++++. ..+ -++ .. ....|++||.|.++
T Consensus 887 ge~~~g~V~~V~~~G~fV~L--------~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~Vk 958 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLV--------PKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQ 958 (977)
T ss_dssp TCEEEEEEEEECSSEEEEEC--------TTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEE
T ss_pred ceEEEEEEEEEcCCeEEEEE--------cCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEE
Confidence 88999999999999999999 43 689999999985 111 010 01 24789999999999
Q ss_pred EEEeCCC----ccEEEEEe
Q 029155 141 VLSLGDA----RAYFLSTA 155 (198)
Q Consensus 141 V~s~~~~----~~~~LSt~ 155 (198)
|.+++.. +.+.||++
T Consensus 959 V~~vd~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 959 VRSVMDPITSKRKAELLLK 977 (977)
T ss_dssp ECCCCCSSSCCCCCCEEEC
T ss_pred EEEEcCcccCCCceEEEeC
Confidence 9998751 56888764
No 47
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=93.31 E-value=0.12 Score=35.91 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=45.0
Q ss_pred eeccCCcEEecCCccCCC--CCeeeCCCEEEe-CCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecC
Q 029155 3 VKEEEMVLVTPGEVLGKA--TEVKAGKGAYVA-KHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (198)
Q Consensus 3 ~~~~~~~iV~PGd~l~~~--~e~~~G~Gty~~-~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~ 67 (198)
+|..+.+.|.||..|..- ..|-||.++-.- |.. |||.+-|.|.... ....++.|+|.|.
T Consensus 23 vK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~T--LfAl~~G~V~f~~----~~~~r~~VsV~p~ 84 (85)
T 3v2d_0 23 VKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFT--LFALVDGVVEFQD----RGRLGRYVHVRPL 84 (85)
T ss_dssp ESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCC--EEESSSEEEEEEE----CGGGCEEEEEEEC
T ss_pred eEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCe--EEEecCEEEEEEE----cCCCCEEEEEEEC
Confidence 577889999999998743 368999999765 444 9999999999853 1123567888874
No 48
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=91.83 E-value=0.22 Score=33.92 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=44.0
Q ss_pred eeccCCcEEecCCccCCC--CCeeeCCCEEEe-CCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEec
Q 029155 3 VKEEEMVLVTPGEVLGKA--TEVKAGKGAYVA-KHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66 (198)
Q Consensus 3 ~~~~~~~iV~PGd~l~~~--~e~~~G~Gty~~-~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p 66 (198)
+|....+.|.||..|..- ..|-||.++-.- |. +|||.+-|.|..... ....++.|+|.|
T Consensus 14 vK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~--TLfAl~~G~V~f~~~---~~~~r~~VsV~p 75 (76)
T 3r8s_W 14 VKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDH--TLFAKADGKVKFEVK---GPKNRKFISIEA 75 (76)
T ss_dssp ESSCTTCEECTTCEEEECSSCSSEECTTEEECTTS--CEEESSSEEEEEEEE---TTTTEEEEEEEC
T ss_pred EEecCCeEEecCcEEEeccCccCcCCCCeeecCCC--eEEEccCEEEEEEEe---CCCCCEEEEEEe
Confidence 577889999999998753 358999999766 44 499999999998520 012356788876
No 49
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=91.33 E-value=0.19 Score=35.37 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=44.8
Q ss_pred eeccCCcEEecCCccCCC--CCeeeCCCEEEe-CCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecC
Q 029155 3 VKEEEMVLVTPGEVLGKA--TEVKAGKGAYVA-KHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (198)
Q Consensus 3 ~~~~~~~iV~PGd~l~~~--~e~~~G~Gty~~-~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~ 67 (198)
+|....+.|.||..|..- ..|-||.++-.- |. +|||.+-|.|.... ...+++.|+|.|.
T Consensus 23 vK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~--TLfAl~~G~V~f~~----~~~~r~~V~V~p~ 84 (91)
T 2zjr_T 23 VKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDH--TLFALSDGKVVFIN----KGKGARFISIEAA 84 (91)
T ss_dssp CSSCTTCEECSSCEEECCSSSSSEECTTEECCTTS--CEEESSCEEEEEEE----ETTTEEEEEECCC
T ss_pred EEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCC--cEEeccceEEEEEE----cCCCcEEEEEEeC
Confidence 577889999999998753 358999998665 44 49999999999852 1124567899874
No 50
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=90.74 E-value=0.74 Score=37.13 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=47.0
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccc---c------ccccc-cCCCCCCEEEEEEE
Q 029155 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI---D------KVDMH-LSFRPGDIVRASVL 142 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~---d------~~~~~-~~~~~GDiV~AkV~ 142 (198)
.|.+|+++.|+|+.++.....+-+ -..|...|+...+++... + ..... +--++|+.|+-||.
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~--------~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~ 197 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLI--------HDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVR 197 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEE--------TTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEE
T ss_pred ecCCCCEEEEEEEEECCCcEEEEE--------eCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEE
Confidence 489999999999999998877765 235666777666531110 0 00000 11136999999999
Q ss_pred EeCCCccEEEEEec
Q 029155 143 SLGDARAYFLSTAK 156 (198)
Q Consensus 143 s~~~~~~~~LSt~~ 156 (198)
++.-.+.+ ||+.+
T Consensus 198 ~~~~~~~~-lsI~G 210 (214)
T 2rf4_A 198 NVHTTGRV-VSVDG 210 (214)
T ss_dssp EEECCSSS-CEEEE
T ss_pred EEEecCCE-EEEEE
Confidence 98643222 55543
No 51
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.16 E-value=0.72 Score=28.76 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=21.2
Q ss_pred EEec-CCCc--eeEEccCCeEEeCCCCCEEe
Q 029155 163 SAES-TAGG--TMVPISWTEMQCPLTGQTEQ 190 (198)
Q Consensus 163 ~a~~-~~g~--~m~~~~~~~~~c~~cg~~e~ 190 (198)
+-.| +||. .|.+-. +.+.|+.||.++-
T Consensus 19 ~k~CP~CG~~~fm~~~~-~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHG-DRWACGKCGYTEW 48 (50)
T ss_dssp SEECSSSCSSCEEEECS-SEEECSSSCCEEE
T ss_pred cccCCCCCCceEEecCC-CeEECCCCCCEEE
Confidence 4567 8987 777654 7899999999874
No 52
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=85.33 E-value=0.24 Score=32.59 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=22.4
Q ss_pred eeEEec-CCCceeEEccCCeEEeCCCCCEE
Q 029155 161 VVSAES-TAGGTMVPISWTEMQCPLTGQTE 189 (198)
Q Consensus 161 vv~a~~-~~g~~m~~~~~~~~~c~~cg~~e 189 (198)
.+.-+| .||..........++||+||.+-
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEE
Confidence 355678 89988765566789999999764
No 53
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=83.52 E-value=1.1 Score=29.96 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=34.4
Q ss_pred eeccCCcEEecCCccCCC--CCeeeCCCEEEe-CCceEEEEeEeeeEE
Q 029155 3 VKEEEMVLVTPGEVLGKA--TEVKAGKGAYVA-KHNGLVYASLTGLLR 47 (198)
Q Consensus 3 ~~~~~~~iV~PGd~l~~~--~e~~~G~Gty~~-~g~~~i~asv~G~v~ 47 (198)
+|..+.+.|.||..|..- ..|-||.++-.- |. +|||.+.|.|+
T Consensus 23 vK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~--TLfAl~~G~V~ 68 (69)
T 2ftc_O 23 IKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNK--CLYALEEGIVR 68 (69)
T ss_pred EEecCCeEecCCeEEEecCCCeEcCCCCeeecCCC--cEEEccceEEe
Confidence 577889999999998753 358899998655 44 49999999986
No 54
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=82.93 E-value=2.2 Score=31.78 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=26.5
Q ss_pred CCCCCEE---------EEEEEEEecceEEEEEeeeccccccCcceeEEe
Q 029155 74 PEPGSVV---------IARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113 (198)
Q Consensus 74 p~vGDiV---------iG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~ 113 (198)
.++||+| +|.|++.+++.+.|.|++|- ..|-+|-||
T Consensus 8 ~~~g~~v~~~yKTG~YigeI~e~~~~~~lVkVlaVl----KHP~QGDLH 52 (130)
T 1y71_A 8 FEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVL----KHPVQGDLH 52 (130)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEE----ECCCC----
T ss_pred CCccceeEEEEecceeEEEEEeecCCeEEEEEEEEe----cCCCccCCC
Confidence 5889999 89999999999999998763 344555554
No 55
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=81.73 E-value=0.42 Score=32.03 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=21.0
Q ss_pred eeEEec-CCCceeEEccCCeEEeCCCCC
Q 029155 161 VVSAES-TAGGTMVPISWTEMQCPLTGQ 187 (198)
Q Consensus 161 vv~a~~-~~g~~m~~~~~~~~~c~~cg~ 187 (198)
.+.-.| .||........+.+.||+||.
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCc
Confidence 455678 999995544567899999998
No 56
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=78.54 E-value=0.62 Score=35.00 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=21.5
Q ss_pred ec-CCCceeEEccCC-----eEEeCCCCCEEe
Q 029155 165 ES-TAGGTMVPISWT-----EMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~~m~~~~~~-----~~~c~~cg~~e~ 190 (198)
.| .||+.|+|.... .+.|+.||..+.
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 58 899999998532 599999999775
No 57
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.67 E-value=1.9 Score=31.24 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.9
Q ss_pred Eec-CCCceeEEccCC-----eEEeCCCCCEEe
Q 029155 164 AES-TAGGTMVPISWT-----EMQCPLTGQTEQ 190 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~-----~~~c~~cg~~e~ 190 (198)
-.| .||+.|+|.... .+.|+.||..+.
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 358 899999997532 699999999875
No 58
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=75.08 E-value=2.7 Score=28.94 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=19.2
Q ss_pred ec-CCCceeE-EccCCeEEeCCCCCEEe
Q 029155 165 ES-TAGGTMV-PISWTEMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~~m~-~~~~~~~~c~~cg~~e~ 190 (198)
.| .||..+. ..+-..++|+.||....
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCCCCCCcceeccCCCeEECCCCCCEec
Confidence 57 7998654 33446899999998753
No 59
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=71.75 E-value=2.4 Score=26.82 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=20.5
Q ss_pred Eec-CCCceeE-EccCCeEEeCCCCCEEeee
Q 029155 164 AES-TAGGTMV-PISWTEMQCPLTGQTEQRK 192 (198)
Q Consensus 164 a~~-~~g~~m~-~~~~~~~~c~~cg~~e~RK 192 (198)
-.| +||..+. ....+.+.|..||.+|..|
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCgyt~~~~ 49 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGYTEFKK 49 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCCEECC
T ss_pred ccCcCCCCceeEeccCCEEECCCCCCEEEeC
Confidence 447 7887432 2234799999999998655
No 60
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=71.65 E-value=3 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=19.1
Q ss_pred ec-CCCc-eeEEc-cCCeEEeCCCCCEEe
Q 029155 165 ES-TAGG-TMVPI-SWTEMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~-~m~~~-~~~~~~c~~cg~~e~ 190 (198)
.| .||+ .|+-- ..++|.|+.||..-.
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 47 7887 76543 346899999998654
No 61
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=69.03 E-value=1.9 Score=31.34 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=24.2
Q ss_pred eEEec-CCCceeEEccCCeE-EeCCCCCEEeeeeC
Q 029155 162 VSAES-TAGGTMVPISWTEM-QCPLTGQTEQRKVA 194 (198)
Q Consensus 162 v~a~~-~~g~~m~~~~~~~~-~c~~cg~~e~RKva 194 (198)
+.++| .||+...... ... .||.||....|-++
T Consensus 72 ~~~~C~~CG~~~e~~~-~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 72 VELECKDCSHVFKPNA-LDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp CEEECSSSSCEECSCC-STTCCCSSSSSCCCEEEE
T ss_pred ceEEcCCCCCEEeCCC-CCCCcCccccCCCcEEec
Confidence 47899 8999876544 457 89999998766544
No 62
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=66.24 E-value=1.6 Score=28.32 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=22.1
Q ss_pred EEec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 163 SAES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 163 ~a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
++.| .||+...| +-.|+.||.---|+|..
T Consensus 30 l~~c~~cGe~~~~----H~vc~~CG~Y~gr~V~~ 59 (60)
T 3v2d_5 30 LVPCPECKAMKPP----HTVCPECGYYAGRKVLE 59 (60)
T ss_dssp CEECTTTCCEECT----TSCCTTTCEETTEECCC
T ss_pred eeECCCCCCeecc----eEEcCCCCcCCCEEeec
Confidence 4567 79987654 46799999888888754
No 63
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=65.56 E-value=0.43 Score=37.89 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=42.6
Q ss_pred eeccCCcEEecCCccCCC--CCeeeCCCEEEe-CCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecC
Q 029155 3 VKEEEMVLVTPGEVLGKA--TEVKAGKGAYVA-KHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (198)
Q Consensus 3 ~~~~~~~iV~PGd~l~~~--~e~~~G~Gty~~-~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~ 67 (198)
+|...++.|.||..|..- ..|-||.++-.- |.. |||.+-|.|+... ...+++.|+|.|.
T Consensus 80 VK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhT--LFAl~~G~VkF~~----~~~~Rk~VsV~p~ 141 (198)
T 3bbo_X 80 VKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHT--IFSLIDGLVKFEK----FGPDRKKISVYPR 141 (198)
T ss_dssp CSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCC--SBCCSCCCCCSSS----SCCCCSCCCSSCC
T ss_pred EEecCCeEeccCcEEEeccCceEcCCCCeeecCCCc--eEeccceEEEEEE----cCCCcEEEEEEeC
Confidence 577788999999998753 357899887543 444 9999999998852 1123566777764
No 64
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=65.53 E-value=5.8 Score=26.30 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=19.6
Q ss_pred ec-CCCceeEEc-cCCeEEeCCCCCEEe
Q 029155 165 ES-TAGGTMVPI-SWTEMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~~m~~~-~~~~~~c~~cg~~e~ 190 (198)
.| .|+++|.-. ..++|.|+.||...+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETTTTEEEE
T ss_pred ECCCCCCcCEEeCCCCEEEcCCCCceec
Confidence 46 788888644 457999999998654
No 65
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=65.47 E-value=2 Score=26.50 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=21.2
Q ss_pred ec-CCCceeEEcc---CCeEEeCCCCCEEeeeeCCC
Q 029155 165 ES-TAGGTMVPIS---WTEMQCPLTGQTEQRKVAKV 196 (198)
Q Consensus 165 ~~-~~g~~m~~~~---~~~~~c~~cg~~e~RKva~~ 196 (198)
.| +||..+-... --+.+||.||.+--=|+-+|
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~p 40 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKP 40 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEEecCC
Confidence 46 7887763221 12579999998877666555
No 66
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=65.01 E-value=5.1 Score=26.42 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=19.7
Q ss_pred ec-CCCceeEEc-cCCeEEeCCCCCEEe
Q 029155 165 ES-TAGGTMVPI-SWTEMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~~m~~~-~~~~~~c~~cg~~e~ 190 (198)
.| .|+++|... ..++|.|+.||...+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 36 788887644 467999999998654
No 67
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=63.66 E-value=5.6 Score=26.22 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=19.6
Q ss_pred ec-CCCceeEEc-cCCeEEeCCCCCEEe
Q 029155 165 ES-TAGGTMVPI-SWTEMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~~m~~~-~~~~~~c~~cg~~e~ 190 (198)
.| .|+++|... ..++|.|+.||...+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTEEEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 46 788887544 467999999998654
No 68
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=62.63 E-value=16 Score=27.99 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=36.2
Q ss_pred EEEEEEEEecceEEEEEeeecc--cc-----c-cCc-ceeEEecccc--ccccccccccccCCCCCCEEE
Q 029155 80 VIARVTKVMTRMASADIMCVGA--KS-----V-REK-FSGIIRQQDV--RATEIDKVDMHLSFRPGDIVR 138 (198)
Q Consensus 80 ViG~V~~v~~~~~~V~I~~v~~--~~-----l-~~~-~~G~l~~s~v--~~~~~d~~~~~~~~~~GDiV~ 138 (198)
++|+|+++.+..+.|.++.-.+ .. . ... ..|++.-.+- ..-......-...+++||.|.
T Consensus 47 lVG~V~~V~~~~S~V~Litd~~~~s~v~v~v~~~~~~~~Gil~G~~~~~~~l~l~~i~~~~~i~~GD~vv 116 (172)
T 2qf4_A 47 LIGSVSKVEENSTIVNLLTNTENADKISVKIQHGSTTIYGIIIGYDKENDVLKISQLNSNSDISAGDKVT 116 (172)
T ss_dssp EEEEEEEECSSCEEEEETTCSBCCSCCEEEEEETTEEEEEEEEEEETTTTEEEEECCSCCCCCCTTCEEE
T ss_pred cEEEEEEECCCeEEEEEEECCCCCEEEEEEEEcCCCCEEEEEEccCCCCCeEEEEECCCCCCCCCCCEEE
Confidence 5899999999999998875443 21 2 334 6677765432 111122223345688999764
No 69
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=62.60 E-value=6.2 Score=26.10 Aligned_cols=26 Identities=15% Similarity=0.067 Sum_probs=19.5
Q ss_pred ec-CCCceeEEc-cCCeEEeCCCCCEEe
Q 029155 165 ES-TAGGTMVPI-SWTEMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~~m~~~-~~~~~~c~~cg~~e~ 190 (198)
.| .|+++|... ..++|.|+.||...+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEEEE
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 36 788887643 457999999998654
No 70
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=60.84 E-value=9.6 Score=29.62 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=22.2
Q ss_pred CCCCCCCCCEEEEEEEEEecceEEEEEeeec
Q 029155 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVG 100 (198)
Q Consensus 70 ~~~~p~vGDiViG~V~~v~~~~~~V~I~~v~ 100 (198)
.+...++||+|.++|..+..+. .+.+.|++
T Consensus 48 ~r~~l~~GDlV~ArV~~~~~~~-~~~Ltc~~ 77 (175)
T 2ja9_A 48 NRPTLQVGDLVYARVCTAEKEL-EAEIECFD 77 (175)
T ss_dssp SCCCCCTTCEEEEEEEECCTTS-CCEEESSC
T ss_pred hhccCCCCCEEEEEEEEecCCC-ceEEEecc
Confidence 3456799999999999998764 34555544
No 71
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=59.32 E-value=41 Score=23.28 Aligned_cols=61 Identities=10% Similarity=-0.035 Sum_probs=39.4
Q ss_pred CCCCEEEEEEEEEecce--EEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC
Q 029155 75 EPGSVVIARVTKVMTRM--ASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD 146 (198)
Q Consensus 75 ~vGDiViG~V~~v~~~~--~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~ 146 (198)
+.++.+.|+|....... -++.- - ...-...+|.+++..... ....+.+||.|..+|..+.+
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfGFI~~--~-----~gg~dvfvH~s~l~~~~~----~~~~l~~Ge~V~g~V~~i~~ 74 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFGFITP--D-----DGSKDVFVHFSAGSSGAA----VRGNPQQGDRVEGKIKSITD 74 (101)
T ss_dssp ----CEEEEEEEEEGGGTEEEEEE--S-----SSSCEEEEECCCSCSSSC----CCCCCCTTCEEEEEEEECCS
T ss_pred cccccceeEEEEEECCCCCEEEEe--C-----CCCcEEEEEEEEEecCCc----cccCCCCCCEEEEEEEEeCC
Confidence 45778999999985433 23333 1 224678999999874321 12568899999999998764
No 72
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=59.19 E-value=6 Score=29.73 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=21.8
Q ss_pred eee-EEec-CCCceeEEccCCeEEeCCCCCEEeee
Q 029155 160 GVV-SAES-TAGGTMVPISWTEMQCPLTGQTEQRK 192 (198)
Q Consensus 160 Gvv-~a~~-~~g~~m~~~~~~~~~c~~cg~~e~RK 192 (198)
|.+ ..+| .||+...|-. ..||.||..+.-.
T Consensus 43 grL~~~rC~~CG~~~~PPr---~~Cp~C~s~~~~~ 74 (145)
T 3irb_A 43 NKIIGSKCSKCGRIFVPAR---SYCEHCFVKIENY 74 (145)
T ss_dssp TCCEEEECTTTCCEEESCC---SEETTTTEECCEE
T ss_pred CeEEEEEeCCCCcEEcCch---hhCcCCCCCceee
Confidence 444 4568 8999999855 5799999876433
No 73
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=58.93 E-value=3.3 Score=31.03 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=21.2
Q ss_pred eEEec-CCCceeEEcc-----------CC---------eEEeCCCCCEEee
Q 029155 162 VSAES-TAGGTMVPIS-----------WT---------EMQCPLTGQTEQR 191 (198)
Q Consensus 162 v~a~~-~~g~~m~~~~-----------~~---------~~~c~~cg~~e~R 191 (198)
..++| .||....... .- .+.||.||....+
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFE 119 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEE
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccE
Confidence 37889 8998875433 11 5889999987554
No 74
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=58.16 E-value=2.2 Score=27.54 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEec-CCCceeEEccCCeEEeCCCCCEEeeeeC
Q 029155 163 SAES-TAGGTMVPISWTEMQCPLTGQTEQRKVA 194 (198)
Q Consensus 163 ~a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva 194 (198)
+..| .||+...| +-.||.||.---|+|-
T Consensus 30 l~~c~~cG~~~~p----H~vc~~CG~Y~gr~v~ 58 (60)
T 2zjr_Z 30 LTECPQCHGKKLS----HHICPNCGYYDGRQVL 58 (60)
T ss_dssp CEECTTTCCEECT----TBCCTTTCBSSSBCSC
T ss_pred ceECCCCCCEeCC----ceEcCCCCcCCCEEee
Confidence 3457 78988543 5799999988888764
No 75
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=57.87 E-value=8.2 Score=25.36 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=19.6
Q ss_pred ec-CCCceeEEc-cCCeEEeCCCCCEEe
Q 029155 165 ES-TAGGTMVPI-SWTEMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~~m~~~-~~~~~~c~~cg~~e~ 190 (198)
.| .|+++|... .+++|.|+.||...+
T Consensus 12 ~CP~ck~~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 12 ACPKDKGPLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred CCCCCCCcCeEeCCCCEEEcCCCCcccc
Confidence 46 788887654 467999999997654
No 76
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=57.86 E-value=17 Score=28.20 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=30.2
Q ss_pred EEEEEEEeCCCccEEEEEecCCCeeeEEec-CCCceeEEccCCeEEeCCCCCE
Q 029155 137 VRASVLSLGDARAYFLSTAKNDLGVVSAES-TAGGTMVPISWTEMQCPLTGQT 188 (198)
Q Consensus 137 V~AkV~s~~~~~~~~LSt~~~~lGvv~a~~-~~g~~m~~~~~~~~~c~~cg~~ 188 (198)
|+|.|..+.... .-.+.-| .|.+.++..+.....|++|+..
T Consensus 27 v~atI~~Ik~d~-----------~~~Y~ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 27 VYGNLVSIQMKN-----------KLYYYRCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp EEEEEECCCCSS-----------CCEEEECTTSCCCEEEETTTEEEETTTTEE
T ss_pred EEEEEEEEcCCC-----------cEEehhchhhCCEeeeCCCCeEECCCCCCC
Confidence 677777775331 3357778 7998888556578999999986
No 77
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=57.16 E-value=3.7 Score=31.19 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=17.9
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEee
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQR 191 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~R 191 (198)
-+| .||+..... ...-.||.||..-+|
T Consensus 133 y~C~~Cg~~~~~~-~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 133 YVCIGCGRKFSTL-PPGGVCPDCGSKVKL 160 (165)
T ss_dssp EEESSSCCEESSC-CGGGBCTTTCCBEEE
T ss_pred EECCCCCCcccCC-CCCCcCCCCCCccee
Confidence 468 799876422 223589999987544
No 78
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=56.08 E-value=8.9 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=17.6
Q ss_pred ecCCCceeEEc-cCCeEEeCCCCCEEe
Q 029155 165 ESTAGGTMVPI-SWTEMQCPLTGQTEQ 190 (198)
Q Consensus 165 ~~~~g~~m~~~-~~~~~~c~~cg~~e~ 190 (198)
+|.||..++-. +-..-+|| ||.+-+
T Consensus 6 ~C~C~~~~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 6 RCDCGRALYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EETTSCCEEEETTCSEEEET-TTEEEE
T ss_pred ECCCCCEEEEcCCCcEEECC-CCCeee
Confidence 45688886433 45689999 998643
No 79
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.29 E-value=5 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=19.2
Q ss_pred ec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 165 ES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 165 ~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
.| +||...-+. .-.|.+||.+..|--++
T Consensus 16 iCpkC~a~~~~g---aw~CrKCG~~~lr~k~k 44 (51)
T 3j21_g 16 VCLRCGATNPWG---AKKCRKCGYKRLRPKAK 44 (51)
T ss_dssp ECTTTCCEECTT---CSSCSSSSSCCCEEECC
T ss_pred cCCCCCCcCCCC---ceecCCCCCcccccccc
Confidence 57 888884333 44699999987775443
No 80
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=52.40 E-value=6.5 Score=29.42 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=19.4
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCE
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQT 188 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~ 188 (198)
..| +|+..-.--....+.||+|+..
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCcceEecCCeEECCccccc
Confidence 568 8887765556688999999964
No 81
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=52.25 E-value=9.1 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=18.6
Q ss_pred ec-CCCc-eeEEc-cCCeEEeCCCCCEEee
Q 029155 165 ES-TAGG-TMVPI-SWTEMQCPLTGQTEQR 191 (198)
Q Consensus 165 ~~-~~g~-~m~~~-~~~~~~c~~cg~~e~R 191 (198)
.| .||. .++-- .-.++.|..||.+-.-
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEECC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEec
Confidence 38 7876 55432 3358999999988543
No 82
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=50.70 E-value=10 Score=31.25 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=22.2
Q ss_pred Eec-CCCceeEEcc-CCeEEeCCCCCEEeeee
Q 029155 164 AES-TAGGTMVPIS-WTEMQCPLTGQTEQRKV 193 (198)
Q Consensus 164 a~~-~~g~~m~~~~-~~~~~c~~cg~~e~RKv 193 (198)
..| .||.++.... ...+.|+.||...-.++
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~~yp~~ 139 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRERYYPQI 139 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCEECCCC
T ss_pred CccccCCCcCccCCCceeeeCCCCCCEecCCC
Confidence 368 8999997653 33799999998765443
No 83
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=50.63 E-value=4.8 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=21.4
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
-+| .|=.... +-..+.||+||+.-.+|+|-
T Consensus 16 LrC~aCf~~t~--~~~k~FCp~CGn~TL~Rvsv 46 (79)
T 2con_A 16 LRCHGCFKTTS--DMNRVFCGHCGNKTLKKVSV 46 (79)
T ss_dssp EECSSSCCEES--CSSCCSCSSSCCSCCEEEEC
T ss_pred eEecccceECC--CcccccccccCcccceEEEE
Confidence 356 5555442 22468999999999999985
No 84
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=50.32 E-value=13 Score=27.95 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=21.8
Q ss_pred eEEec-CCCceeEEccCCeEEeCCCCCE--EeeeeC
Q 029155 162 VSAES-TAGGTMVPISWTEMQCPLTGQT--EQRKVA 194 (198)
Q Consensus 162 v~a~~-~~g~~m~~~~~~~~~c~~cg~~--e~RKva 194 (198)
+..+| .||....|-. ..||.|+.. |-+.+|
T Consensus 46 ~~~rC~~CG~~~fPPr---~~Cp~C~s~~~e~v~ls 78 (145)
T 2gnr_A 46 IGSKCSKCGRIFVPAR---SYCEHCFVKIENYVEIN 78 (145)
T ss_dssp EEEECTTTCCEEESCC---SEETTTTEECCEEEECC
T ss_pred EEEEECCCCcEEeCCC---CCCCCCCCCccEEEEcc
Confidence 45568 8999998855 479999986 444444
No 85
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=47.89 E-value=36 Score=29.79 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=30.5
Q ss_pred EEEEEEEEeCCCccEEEEEecCCCeeeEEec-C--CCceeEEccCCeEEeCCCCCE
Q 029155 136 IVRASVLSLGDARAYFLSTAKNDLGVVSAES-T--AGGTMVPISWTEMQCPLTGQT 188 (198)
Q Consensus 136 iV~AkV~s~~~~~~~~LSt~~~~lGvv~a~~-~--~g~~m~~~~~~~~~c~~cg~~ 188 (198)
.|+|.|..+... +..+..| . |++.+.+.+.....|++|+..
T Consensus 293 ~v~atI~~i~~~------------~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~ 336 (444)
T 4gop_C 293 NVRATVVYIKQE------------NLYYTACASEGCNKKVNLDHENNWRCEKCDRS 336 (444)
T ss_dssp EEEEEEEEECCT------------TCEEEECCSTTCCCBEEECTTSCEEETTTTEE
T ss_pred EEEEEEEEEcCC------------ceEEccCCcccCCCccccCCCccEECCCCCCc
Confidence 377777776532 2568889 6 999998866567999999965
No 86
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=47.54 E-value=36 Score=27.75 Aligned_cols=59 Identities=22% Similarity=0.364 Sum_probs=35.6
Q ss_pred EEEEEEEEecceEEEEEeeeccc----c---ccCc-ceeEEecccc--ccccccccccccCCCCCCEEE
Q 029155 80 VIARVTKVMTRMASADIMCVGAK----S---VREK-FSGIIRQQDV--RATEIDKVDMHLSFRPGDIVR 138 (198)
Q Consensus 80 ViG~V~~v~~~~~~V~I~~v~~~----~---l~~~-~~G~l~~s~v--~~~~~d~~~~~~~~~~GDiV~ 138 (198)
++|+|+++.+..+.|..+.-.+. + .... ..|++.-.+- ..-....+.-...+++||.|.
T Consensus 109 lVG~V~~V~~~~S~V~litd~~~~s~v~v~v~~s~~~~Gil~G~~~~~~~l~l~~i~~~~~i~~GD~Vv 177 (255)
T 2j5u_A 109 LIGKVTTTGAKSATVELLTSSDVKNRVSAKVQGKENAFGIINGYDSDTKLLELKQLPYDMKFKKGQKVV 177 (255)
T ss_dssp EEEEEEEECSSCEEEEETTCCCTTCCEEEEECSSSCEEEEEEEEETTTTEEEEEEEETTSCCCTTCEEE
T ss_pred cEEEEEEECCCeEEEEEEECCCCCeeEEEEEecCCcEEEEEEccCCCCCcEEEEECCCCCCCCCCCEEE
Confidence 58999999999998888654331 1 1234 6677765432 111122223345688999764
No 87
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=46.77 E-value=83 Score=23.08 Aligned_cols=67 Identities=22% Similarity=0.133 Sum_probs=44.1
Q ss_pred CeEEEecCCCCCCCCCCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEE
Q 029155 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRA 139 (198)
Q Consensus 60 ~~i~V~p~~~~~~~p~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~A 139 (198)
..|+|.. +-|.-=-|.|+++..+.+.|... + .....-.++.+++|..... .....|.+||.|.+
T Consensus 6 ~~VEV~~--------~~G~~y~a~V~~v~~d~~~V~f~---n---~w~~~~~vp~~~vRlpP~~--~~~~~f~~gd~VEV 69 (128)
T 3h8z_A 6 LPVEVRG--------SNGAFYKGFVKDVHEDSVTIFFE---N---NWQSERQIPFGDVRLPPPA--DYNKEITEGDEVEV 69 (128)
T ss_dssp CEEEEEC--------TTSCEEEEEEEEECSSEEEEEET---T---CTTCCEEEEGGGEECCCCC------CCCTTCEEEE
T ss_pred cEEEEec--------CCCCEEEEEEEEEeCCcEEEEEc---c---ccCcceEechhhEEcCCCc--ccccCCCCCCEEEE
Confidence 3577764 23888889999999999988882 1 0111457888888854433 23367899999987
Q ss_pred EEE
Q 029155 140 SVL 142 (198)
Q Consensus 140 kV~ 142 (198)
---
T Consensus 70 ~~~ 72 (128)
T 3h8z_A 70 YSR 72 (128)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 88
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=46.16 E-value=42 Score=25.77 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=30.2
Q ss_pred EEEEEEEEeCCCccEEEEEecCCCeeeEEec-C--CCceeEEccCCeEEeCCCCCE
Q 029155 136 IVRASVLSLGDARAYFLSTAKNDLGVVSAES-T--AGGTMVPISWTEMQCPLTGQT 188 (198)
Q Consensus 136 iV~AkV~s~~~~~~~~LSt~~~~lGvv~a~~-~--~g~~m~~~~~~~~~c~~cg~~ 188 (198)
.|+|.|..+... +-.+.-| . |.+.+...+.....|++|+..
T Consensus 28 ~v~atI~~i~~d------------~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~ 71 (181)
T 1l1o_C 28 SSVATVVYLRKE------------NCMYQACPTQDCNKKVIDQQNGLYRCEKCDTE 71 (181)
T ss_dssp EEEEEEEEECCS------------TTEEEBCCSTTCCCBCEEETTTEEEETTTTEE
T ss_pred EEEEEEEEEeCC------------CEEECCCCchhcCCccccCCCCeEECCCCCCc
Confidence 578888877532 2457778 6 999888666567899999865
No 89
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=45.89 E-value=7.8 Score=29.22 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=15.6
Q ss_pred ccccCCCCCCEEEEEEEE
Q 029155 126 DMHLSFRPGDIVRASVLS 143 (198)
Q Consensus 126 ~~~~~~~~GDiV~AkV~s 143 (198)
.|..-|++||||-||+-.
T Consensus 18 ~~~~~f~~GdlVwaK~~g 35 (153)
T 4fu6_A 18 GMTRDFKPGDLIFAKMKG 35 (153)
T ss_dssp CSGGGCCTTCEEEECCTT
T ss_pred hcccCCCCCCEEEEeCCC
Confidence 678889999999999854
No 90
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=45.10 E-value=12 Score=33.31 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCeeeCCCEEEe--CCceEEEEeEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEEecc---eEEEE
Q 029155 21 TEVKAGKGAYVA--KHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTR---MASAD 95 (198)
Q Consensus 21 ~e~~~G~Gty~~--~g~~~i~asv~G~v~~~~~~~~~~~~~~~i~V~p~~~~~~~p~vGDiViG~V~~v~~~---~~~V~ 95 (198)
+++..+.|+.+- +|+|-++++-.+.+.- ..-|+|.|..-+++-++.||.|.|.|..-+.. .+.+.
T Consensus 53 ~~~~~~~g~le~~~~g~gflr~~~~~y~~~----------~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~ 122 (427)
T 3l0o_A 53 TGYFFGEGVLEIHPEGFGFLRRIEDNLLPS----------NDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIK 122 (427)
T ss_dssp SSEEEEEEEEEECTTSCEEEECGGGTTCCC----------SSCEEECHHHHHHTTCCTTCEEEEEEECCCSSSCSEEEEE
T ss_pred cCceeEEEEEEEcCCCceEeeCCccCCCCC----------CCCeeeCHHHHHhcCCCCCCEEEEEEeCCCCCcccccceE
Confidence 346667777664 4554455554444322 13588888655677889999999999876553 68889
Q ss_pred Eeeecccc
Q 029155 96 IMCVGAKS 103 (198)
Q Consensus 96 I~~v~~~~ 103 (198)
|..+++.+
T Consensus 123 v~~vng~~ 130 (427)
T 3l0o_A 123 IEAINYRP 130 (427)
T ss_dssp EEEETTEE
T ss_pred EEecCCCC
Confidence 98888754
No 91
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=45.01 E-value=22 Score=22.31 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=19.8
Q ss_pred ec-CCCceeEEccCCeEEeC--CCCCEEe
Q 029155 165 ES-TAGGTMVPISWTEMQCP--LTGQTEQ 190 (198)
Q Consensus 165 ~~-~~g~~m~~~~~~~~~c~--~cg~~e~ 190 (198)
.| .|.++|.-.. ++|.|+ .||...+
T Consensus 12 ~CP~c~~~L~~~~-~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 12 ACPACHAPLEERD-AELICTGQDCGLAYP 39 (56)
T ss_dssp CCSSSCSCEEEET-TEEEECSSSCCCEEE
T ss_pred eCCCCCCcceecC-CEEEcCCcCCCcEEe
Confidence 47 7888887655 799999 9998754
No 92
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=44.49 E-value=11 Score=27.92 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.3
Q ss_pred CeEEeCCCCCEEeee
Q 029155 178 TEMQCPLTGQTEQRK 192 (198)
Q Consensus 178 ~~~~c~~cg~~e~RK 192 (198)
..|.||+||+..+=|
T Consensus 98 G~L~Cp~cgr~ypI~ 112 (125)
T 3q87_A 98 GSLRCDMCGLIYPIK 112 (125)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEECCCCCCEeecc
Confidence 479999999987644
No 93
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=41.08 E-value=35 Score=21.74 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.1
Q ss_pred CCCCEEEEEEEEEecceEEEEE
Q 029155 75 EPGSVVIARVTKVMTRMASADI 96 (198)
Q Consensus 75 ~vGDiViG~V~~v~~~~~~V~I 96 (198)
-+||.|..+|++...++|.-++
T Consensus 45 lPGE~V~v~i~k~kk~~~~a~~ 66 (68)
T 1yez_A 45 KVGDEVRIKVERVLPKFAFASV 66 (68)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEecCCEEEEEE
Confidence 3699999999999999887665
No 94
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=41.05 E-value=24 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.0
Q ss_pred CCCCCCEEEEEEEEEecceEEEEE
Q 029155 73 VPEPGSVVIARVTKVMTRMASADI 96 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V~I 96 (198)
.+++||.|.++|.++....-.+++
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~i~l 68 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKREIDF 68 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTEEEE
T ss_pred eeCCCCEEEEEEEEEECCCCEEEE
Confidence 579999999999999886444444
No 95
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=40.88 E-value=22 Score=25.88 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=17.9
Q ss_pred ec-CCCc-eeEEccCCeEEeCCCCCEE
Q 029155 165 ES-TAGG-TMVPISWTEMQCPLTGQTE 189 (198)
Q Consensus 165 ~~-~~g~-~m~~~~~~~~~c~~cg~~e 189 (198)
.| .||. .|.+.+-..-+|+.||.+-
T Consensus 62 tCPfCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 62 ACPNCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCCCCCCceeEecCceeEECCCCCCEE
Confidence 46 6787 5666665677899998763
No 96
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=38.98 E-value=39 Score=21.74 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.0
Q ss_pred CCCCEEEEEEEEEecceEEEEE
Q 029155 75 EPGSVVIARVTKVMTRMASADI 96 (198)
Q Consensus 75 ~vGDiViG~V~~v~~~~~~V~I 96 (198)
-+||.|..+|++...++|.-++
T Consensus 47 lPGE~V~v~i~k~kk~~~~a~~ 68 (70)
T 1yvc_A 47 EKGSVINVKVTAVKEKFAFAER 68 (70)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEeeCCeEEEEE
Confidence 3699999999999999887665
No 97
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=37.48 E-value=17 Score=26.80 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=30.0
Q ss_pred eEEEecCCCCCCCCCCCCEEEEEEEEEecc---eEEEEEeeeccc
Q 029155 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTR---MASADIMCVGAK 102 (198)
Q Consensus 61 ~i~V~p~~~~~~~p~vGDiViG~V~~v~~~---~~~V~I~~v~~~ 102 (198)
-|.|.|..-+++-.+.||.|.|+|..-+.. .+.+.|.+|++.
T Consensus 78 DiyVs~~~irrf~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~ 122 (130)
T 1a62_A 78 DIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 (130)
T ss_dssp CEEECHHHHHHTTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTB
T ss_pred CEEECHHHHhHhCCCCCCEEEEEEeCCCCCCcccceeEEEeECCC
Confidence 578877544566789999999999865442 477777666654
No 98
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=36.79 E-value=47 Score=26.62 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=27.9
Q ss_pred CCCCCCEEEEEEEEeCCCccEEEEEecCCCeeeEEec
Q 029155 130 SFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAES 166 (198)
Q Consensus 130 ~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lGvv~a~~ 166 (198)
..++||+|.++|.++.+. .+.+.+.++--|.|....
T Consensus 54 ~p~~GDiV~G~V~~v~~~-~a~V~I~~~~~g~l~ise 89 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAAN-GWAVDIYSPYQAFLPVSE 89 (229)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEGGG
T ss_pred cCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEHHH
Confidence 458999999999999753 678888776667765443
No 99
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=36.28 E-value=13 Score=25.73 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=13.7
Q ss_pred cccCCCCCCEEEEEEEE
Q 029155 127 MHLSFRPGDIVRASVLS 143 (198)
Q Consensus 127 ~~~~~~~GDiV~AkV~s 143 (198)
|...|++||+|-||+-+
T Consensus 2 ~p~~f~~GdlVwaK~~g 18 (94)
T 3qby_A 2 MPHAFKPGDLVFAKMKG 18 (94)
T ss_dssp CCCCCCTTCEEEECCTT
T ss_pred CCCcCccCCEEEEecCC
Confidence 34679999999999854
No 100
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=36.07 E-value=17 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=16.5
Q ss_pred EEec-CCCceeEEccCCeEEeCCCCCE
Q 029155 163 SAES-TAGGTMVPISWTEMQCPLTGQT 188 (198)
Q Consensus 163 ~a~~-~~g~~m~~~~~~~~~c~~cg~~ 188 (198)
.-+| .||....+ . -.-.||.||..
T Consensus 138 ~~~C~~CG~i~~~-~-~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-E-APEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-C-CCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-C-CCCCCCCCCCC
Confidence 4568 89988763 2 12399999964
No 101
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.25 E-value=1.2e+02 Score=21.59 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEEEEEecc-eEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeC
Q 029155 72 PVPEPGSVVIARVTKVMTR-MASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLG 145 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~-~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~ 145 (198)
..|..| -++|+|++..++ .+.|.+ .....-+-|++. -. ..+=.+++||.|.+.....+
T Consensus 10 ~~p~eg-e~~g~V~~~lgn~~f~V~l--------~nG~~~la~i~G---K~----Rk~IwI~~GD~VlVe~~~yd 68 (111)
T 2dgy_A 10 IVPSNQ-QQIVRVLRTPGNNLHEVET--------AQGQRFLVSMPS---KY----RKNIWIKRGDFLIVDPIEEG 68 (111)
T ss_dssp CCCCSS-CEEEEEEECCSSSEEEEEC--------TTSCEEEEECCT---TC----CSCCCCCSSCEEEEEECSSC
T ss_pred cCCCCC-eEEEEEEEeCCCCEEEEEe--------CCCCEEEEEech---hh----cccEEEcCCCEEEEEecccC
Confidence 356655 489999998664 555555 223333333332 11 11455789999999876443
No 102
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=34.21 E-value=48 Score=23.37 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=21.3
Q ss_pred ccCCCCCCEEEEEEEEeCCCccEEEEEe
Q 029155 128 HLSFRPGDIVRASVLSLGDARAYFLSTA 155 (198)
Q Consensus 128 ~~~~~~GDiV~AkV~s~~~~~~~~LSt~ 155 (198)
.+.+++||++.|+|.++.+. .+.+.+.
T Consensus 16 ~~~l~~G~i~~G~V~~v~~f-G~fV~l~ 42 (119)
T 1wi5_A 16 AEALKPGMLLTGTVSSLEDH-GYLVDIG 42 (119)
T ss_dssp TTTCCTTCEEEEEEEEECSS-EEEEECC
T ss_pred HhcCCCCCEEEEEEEEEeCc-eEEEEEC
Confidence 35689999999999999764 4666665
No 103
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=33.87 E-value=12 Score=22.69 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=14.2
Q ss_pred ec-CCCceeEEc-----cCCe----EEeCCCCCE
Q 029155 165 ES-TAGGTMVPI-----SWTE----MQCPLTGQT 188 (198)
Q Consensus 165 ~~-~~g~~m~~~-----~~~~----~~c~~cg~~ 188 (198)
+| .||..-.|. .|.. ..||.||..
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 46 677665432 1222 379999964
No 104
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=33.56 E-value=49 Score=22.16 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=25.3
Q ss_pred eeEEec-CCCceeE-EccCCeEEeCCCCCEEeeeeCC
Q 029155 161 VVSAES-TAGGTMV-PISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 161 vv~a~~-~~g~~m~-~~~~~~~~c~~cg~~e~RKva~ 195 (198)
.+...| .|+..-. +.-|--++|+.||....|-++.
T Consensus 35 ~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 35 TVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp EEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred EeEEECCCCCCCccCCceeecccCcCCCCcCeEecCC
Confidence 356688 7887754 3345556999999998887764
No 105
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=33.41 E-value=1.6e+02 Score=25.98 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=35.3
Q ss_pred CCCCEEEEEEEEEecceEEEEEeeeccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEEEeCC-CccEEE
Q 029155 75 EPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGD-ARAYFL 152 (198)
Q Consensus 75 ~vGDiViG~V~~v~~~~~~V~I~~v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~s~~~-~~~~~L 152 (198)
++|...-|.|+++......|.| +++... ......|++||.|..+|.+++. .+.+.+
T Consensus 402 ~~g~~f~g~vv~l~~~~glV~v------------------~~l~~d----~~~~~~~~lGd~V~V~v~~vd~~~~~i~f 458 (469)
T 2r7d_A 402 QPERVWDAVVVDRRGAQATLLI------------------PDLAFD----VQVNTPAAPGTALQVQFADIDLPQMRVRA 458 (469)
T ss_dssp CTTCCEEEEEEEEETTEEEEEE------------------GGGTEE----EEEECCCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEEEEeCcEEEEEE------------------CCCCeE----EecCCcCCCCCEEEEEEEEEccCCCEEEE
Confidence 5688888888766544444444 433211 1223579999999999999973 344443
No 106
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=32.98 E-value=11 Score=34.92 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=3.2
Q ss_pred EEec-CCCceeEEc-cCCeEEeCCCCCEE
Q 029155 163 SAES-TAGGTMVPI-SWTEMQCPLTGQTE 189 (198)
Q Consensus 163 ~a~~-~~g~~m~~~-~~~~~~c~~cg~~e 189 (198)
+.+| .||..-... ......||+||..+
T Consensus 540 ~~~C~~CGy~~~~~~~~~~~~CP~Cg~~~ 568 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTENGFVCSICGETD 568 (605)
T ss_dssp EEET-------------------------
T ss_pred CccCcccCCcCccCccccCCcCCCCCCCc
Confidence 7789 899754311 11246799999755
No 107
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=32.77 E-value=50 Score=26.46 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=26.7
Q ss_pred CCCCCCEEEEEEEEeCCCccEEEEEecCCCeeeEE
Q 029155 130 SFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSA 164 (198)
Q Consensus 130 ~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lGvv~a 164 (198)
..++||+|.++|.++.+. .+.+.+.++--|.|..
T Consensus 63 ~p~~GDiV~G~V~~v~~~-~~~V~I~~~~~g~l~i 96 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIM-NWFVDINSPYVAVLSV 96 (235)
T ss_dssp CCCTTCCEEEEEEEECSS-EEEEECSSSSCEEEEH
T ss_pred CCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEH
Confidence 468999999999999753 6778887666677653
No 108
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=31.94 E-value=36 Score=21.87 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=15.7
Q ss_pred EEeCCCccEEEEEecCCCeeeEEecCCCce
Q 029155 142 LSLGDARAYFLSTAKNDLGVVSAESTAGGT 171 (198)
Q Consensus 142 ~s~~~~~~~~LSt~~~~lGvv~a~~~~g~~ 171 (198)
+.+.+.+++.+.+.+ .-++.|.||..
T Consensus 5 I~v~~ngP~~v~~e~----~~~~lC~CG~S 30 (60)
T 3tbo_A 5 IRAIENGPYEVKIGG----RAIYLCRCGHS 30 (60)
T ss_dssp EEECTTSCEEEEC-------CEEECCSSCC
T ss_pred EEEeCCCCEEEEECC----cEEEEEECCCC
Confidence 344455688887643 34499999854
No 109
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.41 E-value=46 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=17.8
Q ss_pred CCCCCCEEEEEEEEEecceEEE
Q 029155 73 VPEPGSVVIARVTKVMTRMASA 94 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V 94 (198)
.+++||.|.++|.++......+
T Consensus 60 ~~~~Gd~V~VkV~~vd~~~i~L 81 (103)
T 2eqs_A 60 VVSKGQRVKVKVLSFTGTKTSL 81 (103)
T ss_dssp HCCTTCEEEEEEEEEETTEEEE
T ss_pred EeCCCCEEEEEEEEEECCeeEE
Confidence 4799999999999998764333
No 110
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=30.53 E-value=32 Score=24.15 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=15.7
Q ss_pred EEEEEEEecceEEEEEe
Q 029155 81 IARVTKVMTRMASADIM 97 (198)
Q Consensus 81 iG~V~~v~~~~~~V~I~ 97 (198)
+|+|..++...+-|.|+
T Consensus 61 TG~V~~v~~~AvgV~Vn 77 (96)
T 1vq8_Q 61 TGTVEGKQGDAYKVDIV 77 (96)
T ss_dssp EEEEEEEETTEEEEEEE
T ss_pred CeEEEeECCCEEEEEEe
Confidence 89999999999999885
No 111
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=29.96 E-value=65 Score=25.38 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.3
Q ss_pred CCCCCCEEEEEEEEEecc--eEEEEE
Q 029155 73 VPEPGSVVIARVTKVMTR--MASADI 96 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~--~~~V~I 96 (198)
..++||+|.++|.++.+. .+.+.+
T Consensus 135 ~l~~GD~V~akVisi~~~~~~i~LS~ 160 (209)
T 2nn6_I 135 SFRPGDIVLAKVISLGDAQSNYLLTT 160 (209)
T ss_dssp TCCSSSEEEEEEEEEETTTTEEEEEC
T ss_pred hcCCCCEEEEEEEEEeCCCCeEEEEE
Confidence 368999999999999874 466665
No 112
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=29.90 E-value=66 Score=23.18 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=20.8
Q ss_pred cccCCCCCCEEEEEEEEeCCCccEEEEEe
Q 029155 127 MHLSFRPGDIVRASVLSLGDARAYFLSTA 155 (198)
Q Consensus 127 ~~~~~~~GDiV~AkV~s~~~~~~~~LSt~ 155 (198)
|.+.+.+||++.++|.++.+. .+.+.+.
T Consensus 1 ~~~~~~vG~iv~G~V~~i~~~-G~FV~l~ 28 (130)
T 2k4k_A 1 MAAKFEVGSVYTGKVTGLQAY-GAFVALD 28 (130)
T ss_dssp CCCCCCTTCEEEEEEEEEETT-EEEEEEE
T ss_pred CCCcCCCCCEEEEEEEEEeCC-eEEEEEC
Confidence 346689999999999998654 3555553
No 113
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=29.56 E-value=13 Score=26.30 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=22.7
Q ss_pred eeEEec-CCCceeEEccCCeEEeCCCCCEEeee
Q 029155 161 VVSAES-TAGGTMVPISWTEMQCPLTGQTEQRK 192 (198)
Q Consensus 161 vv~a~~-~~g~~m~~~~~~~~~c~~cg~~e~RK 192 (198)
....+| +||..-.-+. ...|-.||..+.|+
T Consensus 14 KtH~lCrRCG~~sfH~q--K~~CgkCGYpa~k~ 44 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHLQ--KSTCGKCGYPAKRK 44 (97)
T ss_dssp CCEECCTTTCSSCEETT--SCCBTTTCTTTSSC
T ss_pred CCCCcCCCCCCccCcCc--cccCcccCCchHhc
Confidence 445678 8998877654 46999999988765
No 114
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.36 E-value=26 Score=27.25 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=16.1
Q ss_pred EEec-CCCceeEEccCCeEEeCCCCCE
Q 029155 163 SAES-TAGGTMVPISWTEMQCPLTGQT 188 (198)
Q Consensus 163 ~a~~-~~g~~m~~~~~~~~~c~~cg~~ 188 (198)
.=+| .||....-..- --.||.||..
T Consensus 155 ~~~C~~CG~~~~g~~~-p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGA-PELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEEC-CSBCTTTCCB
T ss_pred eEEECCCCCEeeCCCC-CCCCCCCcCC
Confidence 5678 79988641111 1189999984
No 115
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=29.22 E-value=72 Score=25.90 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=26.3
Q ss_pred CCCCCCEEEEEEEEeCCCccEEEEEecCCCeeeEE
Q 029155 130 SFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSA 164 (198)
Q Consensus 130 ~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lGvv~a 164 (198)
..++||+|.++|.++.+. .+.+.+.+.--|.|..
T Consensus 71 ~p~~GDiV~G~V~~v~~~-ga~VdI~~~~~GlL~i 104 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIY-GWVVDIKAPYKAYLPA 104 (251)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEH
T ss_pred CCCCCCEEEEEEEEEeCc-eEEEEcCCCeEEEEEH
Confidence 458999999999999753 6777877666676654
No 116
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=29.20 E-value=98 Score=22.15 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=18.3
Q ss_pred CCCCCCCEEEEEEEEEec-ceEEEEE
Q 029155 72 PVPEPGSVVIARVTKVMT-RMASADI 96 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~-~~~~V~I 96 (198)
..|..|+. +|+|++..+ ..+.|..
T Consensus 27 ~~~~~~e~-~G~Vi~~lgn~~y~V~~ 51 (117)
T 2oqk_A 27 VFKEEGQE-YGQVQRMLGNGRLDAYC 51 (117)
T ss_dssp CCCCTTEE-EEEEEEEEETTEEEEEE
T ss_pred cCCCCCEE-EEEEEEEcCCCEEEEEe
Confidence 35677765 899999988 7777766
No 117
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=29.19 E-value=82 Score=22.62 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=19.7
Q ss_pred CCCCCCCCCCEE---EEEEEEEecceEEEE
Q 029155 69 AHGPVPEPGSVV---IARVTKVMTRMASAD 95 (198)
Q Consensus 69 ~~~~~p~vGDiV---iG~V~~v~~~~~~V~ 95 (198)
...|..++|+-+ .|+|++|+++.+.+.
T Consensus 47 G~vyrVk~G~yiG~N~GrI~~It~~~I~l~ 76 (113)
T 2ivw_A 47 GYVYTVGVGNYLGQNYGRIESITDDSIVLN 76 (113)
T ss_dssp TEEEEECSSEEETTTEEEEEEEETTEEEEE
T ss_pred CcEEEEccCCEeccCCCEEEEEeCCeEEEE
Confidence 344556667766 899999999886554
No 118
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.15 E-value=13 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=19.9
Q ss_pred CeeeEEec-CCCceeEEccCCeEEeCCCCCE
Q 029155 159 LGVVSAES-TAGGTMVPISWTEMQCPLTGQT 188 (198)
Q Consensus 159 lGvv~a~~-~~g~~m~~~~~~~~~c~~cg~~ 188 (198)
|-+..+.| +||......-...-.||.|+..
T Consensus 63 L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFKAEINIPSRCPKCKSE 93 (105)
T ss_dssp EEECCCBBTTTCCBCCCCSSCCSSCSSSCCC
T ss_pred EEEECcChhhCcCeecccCCCCCCCcCCCCC
Confidence 44557889 8999872111234789999864
No 119
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=28.97 E-value=50 Score=21.63 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=25.8
Q ss_pred EEec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 163 SAES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 163 ~a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
-+.| -|+..|.-...+-++|..|+..--++...
T Consensus 34 pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~ 67 (77)
T 2enn_A 34 PTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCID 67 (77)
T ss_dssp CEECSSSCCEECCTTCCEEECSSSCCEEESGGGS
T ss_pred CcCccccChhhccccccccCcCCCCCcCCHhHHh
Confidence 4667 79999975556889999999887776654
No 120
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=28.79 E-value=39 Score=20.08 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=21.4
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
+.| -|+..| |+-++|..|+..--++.+.
T Consensus 15 t~C~~C~~~l----~qG~~C~~C~~~~H~~C~~ 43 (52)
T 1faq_A 15 AFCDICQKFL----LNGFRCQTCGYKFHEHCST 43 (52)
T ss_dssp EECTTSSSEE----CSEEECTTTTCCBCSTTSS
T ss_pred cCCCCccccc----ccCCEeCCCCCeEChhHHh
Confidence 567 688887 4789999999876666543
No 121
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=28.72 E-value=50 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEE
Q 029155 73 VPEPGSVVIARVTKVMTRMASADI 96 (198)
Q Consensus 73 ~p~vGDiViG~V~~v~~~~~~V~I 96 (198)
.+++||.|.++|.++....-.+.+
T Consensus 75 ~~~vGd~V~v~V~~vd~~~~ki~L 98 (109)
T 2khj_A 75 VLSVGDEVEAKFTGVDRKNRAISL 98 (109)
T ss_dssp SCCTTCEEEEEEEEEETTTTEEEE
T ss_pred ccCCCCEEEEEEEEEECCCCEEEE
Confidence 478999999999999875433443
No 122
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=28.33 E-value=30 Score=24.59 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.7
Q ss_pred ccCCCCCCEEEEEEE
Q 029155 128 HLSFRPGDIVRASVL 142 (198)
Q Consensus 128 ~~~~~~GDiV~AkV~ 142 (198)
...|.+||+|-||+-
T Consensus 17 ~~~~~~GdlVwaK~k 31 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMK 31 (110)
T ss_dssp SSSCCTTCEEEEEET
T ss_pred cCCCCCCCEEEEEeC
Confidence 467899999999874
No 123
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=28.31 E-value=21 Score=22.61 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=24.2
Q ss_pred EEec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 163 SAES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 163 ~a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
-+.| -|+..|.-...+-++|..|+..-=+|.+.
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 53 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 53 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhh
Confidence 3456 68888865556889999999877666543
No 124
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=28.01 E-value=1.3e+02 Score=19.83 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.1
Q ss_pred EEEEEEEecceEEEEE
Q 029155 81 IARVTKVMTRMASADI 96 (198)
Q Consensus 81 iG~V~~v~~~~~~V~I 96 (198)
-|+|+++.++.+.|+.
T Consensus 6 P~kVvei~~~~A~vd~ 21 (75)
T 2z1c_A 6 PGKVIEVNGPVAVVDF 21 (75)
T ss_dssp CEEEEEEETTEEEEEE
T ss_pred cEEEEEECCCEEEEEc
Confidence 4789999777888887
No 125
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=27.05 E-value=20 Score=25.33 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=12.8
Q ss_pred cCCCCCCEEEEEEEE
Q 029155 129 LSFRPGDIVRASVLS 143 (198)
Q Consensus 129 ~~~~~GDiV~AkV~s 143 (198)
..|++||+|.||+-+
T Consensus 4 ~~~~~GdlVwaK~~g 18 (108)
T 2l89_A 4 DRLNFGDRILVKAPG 18 (108)
T ss_dssp CCCCTTEEEEEECSS
T ss_pred CcccCCCEEEEEeCC
Confidence 568999999999864
No 126
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=26.73 E-value=23 Score=29.14 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=17.0
Q ss_pred ec-CCCceeEEc---cCCeEEeCCCCC
Q 029155 165 ES-TAGGTMVPI---SWTEMQCPLTGQ 187 (198)
Q Consensus 165 ~~-~~g~~m~~~---~~~~~~c~~cg~ 187 (198)
.| .||.++... +-....||.|-.
T Consensus 244 pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCEeeEEEECCCceEECCCCCC
Confidence 48 799987654 345889999975
No 127
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=26.54 E-value=1.8e+02 Score=23.78 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=14.4
Q ss_pred ccccCCCCCCEEEEE---EEEeC
Q 029155 126 DMHLSFRPGDIVRAS---VLSLG 145 (198)
Q Consensus 126 ~~~~~~~~GDiV~Ak---V~s~~ 145 (198)
.|-..+.+||+|+.+ |.+.+
T Consensus 63 ~LP~v~~~GDII~l~~vki~~~~ 85 (294)
T 1xjv_A 63 ALPIIYKNGDIVRFHRLKIQVYK 85 (294)
T ss_dssp GSCCCCSTTCEEEEEEEEEEEET
T ss_pred HCCCCCCCCCEEEEEEEEEEEEC
Confidence 555566999999865 66654
No 128
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=26.11 E-value=34 Score=23.98 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=12.1
Q ss_pred cCCCCCCEEEEEEE
Q 029155 129 LSFRPGDIVRASVL 142 (198)
Q Consensus 129 ~~~~~GDiV~AkV~ 142 (198)
..|.+||+|-||+-
T Consensus 5 ~~~~~GdlVwaK~~ 18 (109)
T 1h3z_A 5 VNYKPGMRVLTKMS 18 (109)
T ss_dssp CCCCTTCEEEEEET
T ss_pred ccCCCCCEEEEEeC
Confidence 56899999999984
No 129
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=26.07 E-value=27 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=13.8
Q ss_pred ec-CCCceeEEcc------------CCeEEeCCCCCE
Q 029155 165 ES-TAGGTMVPIS------------WTEMQCPLTGQT 188 (198)
Q Consensus 165 ~~-~~g~~m~~~~------------~~~~~c~~cg~~ 188 (198)
.| .|+.+|+|.. |-...|..||+.
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~ 103 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYI 103 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 46 5666665531 234567777764
No 130
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.81 E-value=37 Score=22.80 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=24.9
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
+.| -|+..|.-...+-++|..|+..--+|.+.
T Consensus 29 t~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~ 61 (85)
T 2eli_A 29 TFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVI 61 (85)
T ss_dssp CBCSSSCCBCCCSSSCEEECSSSCCEEETTTTT
T ss_pred cCCcccCccccccccCCCcCCCcCCccCHhHHh
Confidence 457 68998875566889999999887777654
No 131
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=25.33 E-value=34 Score=21.57 Aligned_cols=32 Identities=9% Similarity=0.244 Sum_probs=24.5
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
+.| -|+..|.-...+-++|..|+..--+|.+.
T Consensus 24 t~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 56 (65)
T 2enz_A 24 TFCEHCGTLLWGLARQGLKCDACGMNVHHRCQT 56 (65)
T ss_dssp CBCSSSCCBCCCSSSCSEEESSSCCEECTTTTT
T ss_pred cCchhcChhheecCCcccccCCCCCccCHhHHh
Confidence 457 68998865555789999999887777654
No 132
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.15 E-value=74 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=21.4
Q ss_pred ccccCCCCCCEEEEEEEEeCCCccEEEEE
Q 029155 126 DMHLSFRPGDIVRASVLSLGDARAYFLST 154 (198)
Q Consensus 126 ~~~~~~~~GDiV~AkV~s~~~~~~~~LSt 154 (198)
.+...+.+||++.++|.++.+. .+.+.+
T Consensus 15 ~~~~~~~vG~iv~G~V~~I~~f-GaFV~l 42 (119)
T 2cqo_A 15 TMENLPALYTIFQGEVAMVTDY-GAFIKI 42 (119)
T ss_dssp CSCCSCCTTCEEEEEEEEEETT-EEEEEC
T ss_pred hhhcccCCCCEEEEEEEEEeCc-eEEEEE
Confidence 4567789999999999998653 345555
No 133
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=24.90 E-value=72 Score=19.34 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=28.8
Q ss_pred CEEEEEEEEEecceEEEEEee-eccccccCcceeEEeccccccccccccccccCCCCCCEEEEEEE
Q 029155 78 SVVIARVTKVMTRMASADIMC-VGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVL 142 (198)
Q Consensus 78 DiViG~V~~v~~~~~~V~I~~-v~~~~l~~~~~G~l~~s~v~~~~~d~~~~~~~~~~GDiV~AkV~ 142 (198)
...-|+|+++......+++.. .++. .+.+.+....+ + .-.+.+||-|.|.+-
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~----~l~a~it~~s~-----~----~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGT----ELVAAITIDSV-----A----DLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTE----EEEEEEEHHHH-----H----HHTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCC----EEEEEeCHHHH-----H----hCCCCCCCEEEEEEe
Confidence 357799999977654444421 1110 13333332211 1 235789999999874
No 134
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=24.82 E-value=61 Score=20.08 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=20.5
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVA 194 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva 194 (198)
+.| -||..| . .+-++|..|+..--+|..
T Consensus 23 t~C~~C~~~i--~-kqg~kC~~C~~~cH~kC~ 51 (59)
T 1rfh_A 23 GWCDLCGREV--L-RQALRCANCKFTCHSECR 51 (59)
T ss_dssp EECTTTCSEE--C-SCCEECTTTSCEECHHHH
T ss_pred eEchhcchhh--h-hCccEeCCCCCeEehhhh
Confidence 456 699998 2 367999999987655543
No 135
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=24.82 E-value=89 Score=21.54 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=17.8
Q ss_pred CCCCCCCCCEE---EEEEEEEecceEEE
Q 029155 70 HGPVPEPGSVV---IARVTKVMTRMASA 94 (198)
Q Consensus 70 ~~~~p~vGDiV---iG~V~~v~~~~~~V 94 (198)
..|..++|+-+ .|+|++|+++...+
T Consensus 45 ~v~~V~~G~yiG~n~G~I~~I~~~~I~l 72 (93)
T 2y4x_A 45 GVHRVRVGDYLGRNDGKVVGISEGKIDV 72 (93)
T ss_dssp EEEEECTTCEETTTTEEEEEEETTEEEE
T ss_pred CEEEEccCCEeccCCCEEEEEeCCeEEE
Confidence 34455666666 69999999988644
No 136
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=24.54 E-value=94 Score=21.78 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=21.3
Q ss_pred cCCCCCCEEEEEEEEeCCCcc------EEEEEecCCCeeeE
Q 029155 129 LSFRPGDIVRASVLSLGDARA------YFLSTAKNDLGVVS 163 (198)
Q Consensus 129 ~~~~~GDiV~AkV~s~~~~~~------~~LSt~~~~lGvv~ 163 (198)
+.|++||.|...+.-.++... +-+..++..++-=+
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tf 42 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATF 42 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEE
Confidence 458999999998876532221 44555555554333
No 137
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=24.53 E-value=39 Score=20.54 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=23.1
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
+.| -|+..| |+-++|..|+..=-+|.+.
T Consensus 15 t~C~~C~k~i----~~G~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSM----IFGVKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSS----CCEEEETTTTEEESSSCTT
T ss_pred cCccccCcee----ECcCCCCCCCCccchhhcC
Confidence 668 799988 5679999999988887765
No 138
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.36 E-value=35 Score=27.99 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=17.7
Q ss_pred Eec-CCCceeEEc---cCCeEEeCCCCC
Q 029155 164 AES-TAGGTMVPI---SWTEMQCPLTGQ 187 (198)
Q Consensus 164 a~~-~~g~~m~~~---~~~~~~c~~cg~ 187 (198)
..| .||.++... +-....||.|..
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 348 799987655 345889999975
No 139
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=24.28 E-value=87 Score=26.11 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=27.3
Q ss_pred CCCCCCEEEEEEEEeCCCccEEEEEecCCCeeeEEe
Q 029155 130 SFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAE 165 (198)
Q Consensus 130 ~~~~GDiV~AkV~s~~~~~~~~LSt~~~~lGvv~a~ 165 (198)
.-++||+|.++|.++.. ..+.+.+.....+.+...
T Consensus 124 iP~vGDiVIG~Vt~v~~-~~~~VdI~s~~~a~L~~~ 158 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSG-DIFKVDVGGSEPASLSYL 158 (289)
T ss_dssp CCCSSEEEEEEEEEEET-TEEEEECSSSSCCCEESC
T ss_pred CCCCCCEEEEEEEEEeC-cEEEEEECCCceeEEehh
Confidence 34899999999999863 468888888776766543
No 140
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=24.15 E-value=1.1e+02 Score=20.63 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=29.5
Q ss_pred CCCCCEEEEEEEEeCCCccEEEEEecCCCeeeEEec-CC---CceeEE--ccCCeEEeCCCCCEEe
Q 029155 131 FRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAES-TA---GGTMVP--ISWTEMQCPLTGQTEQ 190 (198)
Q Consensus 131 ~~~GDiV~AkV~s~~~~~~~~LSt~~~~lGvv~a~~-~~---g~~m~~--~~~~~~~c~~cg~~e~ 190 (198)
+.+|+.+..++ + +.++.|--.+ |.++|.. .| |.+|.. .....+.||--|+.-.
T Consensus 11 l~~g~~~~~~~---~-g~~i~v~r~~---g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd 69 (106)
T 3dqy_A 11 LPPGEMQRYEG---G-PEPVMVCNVD---GEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFC 69 (106)
T ss_dssp SCTTCEEEECC---S-SSCEEEEEET---TEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEE
T ss_pred CCCCCEEEEEE---C-CEEEEEEEEC---CEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEe
Confidence 45677655443 2 3456555322 5566655 44 444431 2346799998887654
No 141
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=24.08 E-value=27 Score=21.97 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=18.5
Q ss_pred EEec-CCCceeEEccCCeEEeCCCCCEEeeeeC
Q 029155 163 SAES-TAGGTMVPISWTEMQCPLTGQTEQRKVA 194 (198)
Q Consensus 163 ~a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva 194 (198)
+..| .||+...| +..|++ |.-.-|+|.
T Consensus 27 l~~c~~cGe~~l~----H~vc~~-G~Y~gr~V~ 54 (56)
T 3r8s_0 27 LSVDKTSGEKHLR----HHITAD-GYYRGRKVI 54 (56)
T ss_dssp EEECTTTCCEEET----TBCCTT-SEETTEECS
T ss_pred eeECCCCCCeecc----cEECCC-CeECCEEee
Confidence 4567 78886654 577888 877766653
No 142
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.75 E-value=31 Score=28.49 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=16.7
Q ss_pred Eec-CCCceeEEc---cCCeEEeCCCC
Q 029155 164 AES-TAGGTMVPI---SWTEMQCPLTG 186 (198)
Q Consensus 164 a~~-~~g~~m~~~---~~~~~~c~~cg 186 (198)
..| .||.++... +-....||.|.
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 358 799987653 24588999996
No 143
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=23.43 E-value=2.1e+02 Score=20.45 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=14.2
Q ss_pred ccCCCCCCEE--EEEEEEeCC
Q 029155 128 HLSFRPGDIV--RASVLSLGD 146 (198)
Q Consensus 128 ~~~~~~GDiV--~AkV~s~~~ 146 (198)
.+.|.+||+| .+++.++.+
T Consensus 82 ~~~~~~g~yVrV~G~v~~f~g 102 (136)
T 4gop_B 82 ASEIRNNVYVRVLGTLKSFQN 102 (136)
T ss_dssp CCSCCTTCEEEEEEEEEEETT
T ss_pred ccccCCCCEEEEEEEEEEeCC
Confidence 5678999998 566777653
No 144
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=23.26 E-value=1.6e+02 Score=21.37 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=26.9
Q ss_pred CeEEEecCCCCCCCCCCCCEE----------EEEEEEEecc--eEEEEE
Q 029155 60 PTVEVTGHKAHGPVPEPGSVV----------IARVTKVMTR--MASADI 96 (198)
Q Consensus 60 ~~i~V~p~~~~~~~p~vGDiV----------iG~V~~v~~~--~~~V~I 96 (198)
..+.|....=...+|++|+-| +|+..++..+ .+.|.+
T Consensus 57 ~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~l 105 (127)
T 2ckk_A 57 DKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVI 105 (127)
T ss_dssp CEEEEEGGGEEECCCCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEE
T ss_pred CEEEEchHHcEEecCCCCCEEEEEecccCCcEEEEEEEeCCCcEEEEEE
Confidence 567776533235789999998 7888888766 666666
No 145
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=23.12 E-value=32 Score=28.13 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=15.5
Q ss_pred ec-CCCceeEEc---cCCeEEeCCCC
Q 029155 165 ES-TAGGTMVPI---SWTEMQCPLTG 186 (198)
Q Consensus 165 ~~-~~g~~m~~~---~~~~~~c~~cg 186 (198)
.| .||.++... +-....||.|-
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCEeEEEEECCCCeEECCCCC
Confidence 47 788887554 34578899885
No 146
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=22.95 E-value=1.1e+02 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=19.3
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEE
Q 029155 72 PVPEPGSVVIARVTKVMTRMASADI 96 (198)
Q Consensus 72 ~~p~vGDiViG~V~~v~~~~~~V~I 96 (198)
-..++||.|..+|.++....-.+++
T Consensus 60 ~~~~vGd~V~vkVl~vd~~~~~I~L 84 (175)
T 2a19_A 60 KLIRVGKNDVAVVLRVDKEKGYIDL 84 (175)
T ss_dssp CCCCTTSEEEEEEEEEETTTTEEEE
T ss_pred HcCCCCCEEEEEEEEEECCCCeEEE
Confidence 4579999999999999875444444
No 147
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=22.81 E-value=40 Score=19.62 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=9.0
Q ss_pred CeEEeCCCCCEE
Q 029155 178 TEMQCPLTGQTE 189 (198)
Q Consensus 178 ~~~~c~~cg~~e 189 (198)
....|+.||..-
T Consensus 8 ~~~~C~~C~~~i 19 (39)
T 2i5o_A 8 DQVPCEKCGSLV 19 (39)
T ss_dssp CEEECTTTCCEE
T ss_pred CCcccccccCcC
Confidence 357899998764
No 148
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=22.80 E-value=53 Score=23.93 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=23.2
Q ss_pred EEEEEEEecceEEEEEeeec-cccccCcceeEEeccccc
Q 029155 81 IARVTKVMTRMASADIMCVG-AKSVREKFSGIIRQQDVR 118 (198)
Q Consensus 81 iG~V~~v~~~~~~V~I~~v~-~~~l~~~~~G~l~~s~v~ 118 (198)
.|+|++|....+.|-+-.++ .++-....++-||+|++.
T Consensus 60 ~GkV~~V~~k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~ 98 (120)
T 1vq8_T 60 EGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVR 98 (120)
T ss_dssp EEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEE
T ss_pred EEEEEEEECCCCEEEEeCeEeEcCCCCEEEeeechHHEE
Confidence 79999998776666553331 111122456677777764
No 149
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=22.79 E-value=66 Score=23.70 Aligned_cols=38 Identities=5% Similarity=-0.018 Sum_probs=24.0
Q ss_pred EEEEEEEecceEEEEEeeeccc-cccCcceeEEeccccc
Q 029155 81 IARVTKVMTRMASADIMCVGAK-SVREKFSGIIRQQDVR 118 (198)
Q Consensus 81 iG~V~~v~~~~~~V~I~~v~~~-~l~~~~~G~l~~s~v~ 118 (198)
.|+|+.|....+.|-|-.++-. +-....++-||+|++.
T Consensus 67 ~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~ 105 (127)
T 3u5e_Y 67 EGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLV 105 (127)
T ss_dssp EEEEEEEEGGGTEEEEETCEEECSSSCEEECCBCGGGEE
T ss_pred cceEEEEECCCCEEEEeCeEEECCCCcEEEcccchHHEE
Confidence 5999999887666666444321 1123456677877764
No 150
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.63 E-value=38 Score=22.55 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=24.2
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
+.| -|+..|.-...+-++|..|+..--++...
T Consensus 29 t~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 29 TFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCID 61 (83)
T ss_dssp CCCSSSCCCCCSSSCCEEEETTTCCEECTTGGG
T ss_pred cChhhcChhhccccccccccCCcCCeeChhhhh
Confidence 457 69998865556789999999887666543
No 151
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.54 E-value=34 Score=28.15 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=16.3
Q ss_pred Eec-CCCceeEEc---cCCeEEeCCCC
Q 029155 164 AES-TAGGTMVPI---SWTEMQCPLTG 186 (198)
Q Consensus 164 a~~-~~g~~m~~~---~~~~~~c~~cg 186 (198)
..| .||.++... +-....||.|-
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 347 799887554 34578999995
No 152
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.29 E-value=36 Score=16.07 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.4
Q ss_pred eEEeCCCCCEEeee
Q 029155 179 EMQCPLTGQTEQRK 192 (198)
Q Consensus 179 ~~~c~~cg~~e~RK 192 (198)
...|+.||+.-.++
T Consensus 3 ~~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 3 PYSCSVCGKRFSLK 16 (28)
T ss_dssp SEECSSSCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 47899999876553
No 153
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.15 E-value=48 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=14.4
Q ss_pred CCCc-eeEEccCCeEEeCCCCCEE
Q 029155 167 TAGG-TMVPISWTEMQCPLTGQTE 189 (198)
Q Consensus 167 ~~g~-~m~~~~~~~~~c~~cg~~e 189 (198)
.||. .|.+..-..-.|..|+.+.
T Consensus 32 fCgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 32 VCGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred CCCCceeEEEEeEEEECCCCCcEE
Confidence 5666 4655554456788887653
No 154
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=22.07 E-value=54 Score=24.53 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.2
Q ss_pred ccCCCCCCEEEEEEEE
Q 029155 128 HLSFRPGDIVRASVLS 143 (198)
Q Consensus 128 ~~~~~~GDiV~AkV~s 143 (198)
...|.+||+|-|||-+
T Consensus 9 ~~~~~~GDlVWaKvkG 24 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKG 24 (147)
T ss_dssp SSSCCTTCEEEEEETT
T ss_pred CccCcCCCEEEEecCC
Confidence 4679999999999843
No 155
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=21.91 E-value=32 Score=25.05 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=6.2
Q ss_pred eEEeCCCCCE
Q 029155 179 EMQCPLTGQT 188 (198)
Q Consensus 179 ~~~c~~cg~~ 188 (198)
...|..||+.
T Consensus 89 v~tCl~Cg~~ 98 (123)
T 2k3r_A 89 VVKCLECGHI 98 (123)
T ss_dssp EEEETTTTEE
T ss_pred EEECCCCCCE
Confidence 4467777754
No 156
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.91 E-value=1e+02 Score=19.16 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=18.4
Q ss_pred CCCCCCEE----------EEEEEEEecceEEEEE
Q 029155 73 VPEPGSVV----------IARVTKVMTRMASADI 96 (198)
Q Consensus 73 ~p~vGDiV----------iG~V~~v~~~~~~V~I 96 (198)
.+++||.| .|+|.++....+.|.+
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v 40 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDGNKITIMP 40 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEE
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEE
Confidence 35777777 7999999988666666
No 157
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.86 E-value=33 Score=16.39 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=10.5
Q ss_pred eEEeCCCCCEEeee
Q 029155 179 EMQCPLTGQTEQRK 192 (198)
Q Consensus 179 ~~~c~~cg~~e~RK 192 (198)
...|+.||+.-.++
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvg_A 3 PYRCPLCRAGCPSL 16 (27)
T ss_dssp TEEETTTTEEESCH
T ss_pred CcCCCCCCcccCCH
Confidence 47899999876554
No 158
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.74 E-value=39 Score=15.99 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=9.8
Q ss_pred EEeCCCCCEEeee
Q 029155 180 MQCPLTGQTEQRK 192 (198)
Q Consensus 180 ~~c~~cg~~e~RK 192 (198)
..|+.||..-.++
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 6799999876543
No 159
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.65 E-value=33 Score=23.57 Aligned_cols=10 Identities=30% Similarity=0.993 Sum_probs=8.0
Q ss_pred eEEeCCCCCE
Q 029155 179 EMQCPLTGQT 188 (198)
Q Consensus 179 ~~~c~~cg~~ 188 (198)
.++||.||..
T Consensus 51 ~FkCP~CgEE 60 (95)
T 2k5c_A 51 VFKCPVCGEE 60 (95)
T ss_dssp EEECTTTCCE
T ss_pred hhcCCCccHH
Confidence 4799999964
No 160
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=21.45 E-value=71 Score=20.13 Aligned_cols=28 Identities=7% Similarity=0.162 Sum_probs=20.8
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeee
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRK 192 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RK 192 (198)
+.| .||..+. .+.+.++|..|+..--++
T Consensus 20 ~~C~~Cg~~i~-~gkq~~kC~dC~~~cH~~ 48 (61)
T 4b6d_A 20 ESCVPCGKRIK-FGKLSLKCRDCRVVSHPE 48 (61)
T ss_dssp EECTTTCCEEC-TTCEEEEESSSSCEECGG
T ss_pred cccccccCEEE-EeeEeeECCCCCCeEchh
Confidence 667 7888874 555689999999765444
No 161
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=21.18 E-value=60 Score=22.76 Aligned_cols=13 Identities=8% Similarity=-0.140 Sum_probs=10.6
Q ss_pred CeEEeCCCCCEEe
Q 029155 178 TEMQCPLTGQTEQ 190 (198)
Q Consensus 178 ~~~~c~~cg~~e~ 190 (198)
++|.|+.||...+
T Consensus 52 ~~LvC~~c~~~YP 64 (97)
T 2k5r_A 52 EALITRDRKQVFR 64 (97)
T ss_dssp EEEECTTSCEEEE
T ss_pred CeEEcCCCCCCcc
Confidence 5799999997653
No 162
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.17 E-value=99 Score=21.79 Aligned_cols=29 Identities=7% Similarity=0.089 Sum_probs=19.5
Q ss_pred eEEec-CCCceeEEccCCeEEeCCCCCEEee
Q 029155 162 VSAES-TAGGTMVPISWTEMQCPLTGQTEQR 191 (198)
Q Consensus 162 v~a~~-~~g~~m~~~~~~~~~c~~cg~~e~R 191 (198)
..+.| .|..+|.+.+ ....|..|..--.+
T Consensus 31 M~~~CP~Cq~eL~~~g-~~~hC~~C~~~f~~ 60 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN-GHARCRSCGEFIEM 60 (101)
T ss_dssp CCCBCSSSCSBEEEET-TEEEETTTCCEEEE
T ss_pred ccccCccCCCcceecC-CEEECccccchhhc
Confidence 34678 7888888765 46667777765433
No 163
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=20.97 E-value=48 Score=21.61 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=21.8
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeCC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVAK 195 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva~ 195 (198)
+.| -||..| ..+-++|..|+..--+|...
T Consensus 36 t~C~~C~~~l---~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 36 GWCDLCGREV---LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp CBCTTTSSBC---SSCCEECTTSSCEECTGGGG
T ss_pred cchhhhhHHH---HhCcCccCCCCCeechhhhc
Confidence 446 699998 34679999999887766654
No 164
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.87 E-value=36 Score=19.99 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=22.6
Q ss_pred Eec-CCCceeEEccCCeEEeCCCCCEEeeeeC
Q 029155 164 AES-TAGGTMVPISWTEMQCPLTGQTEQRKVA 194 (198)
Q Consensus 164 a~~-~~g~~m~~~~~~~~~c~~cg~~e~RKva 194 (198)
+.| -|+..|.-...+-++|..|+..--+|.+
T Consensus 12 t~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~ 43 (50)
T 1ptq_A 12 TFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCR 43 (50)
T ss_dssp CBCTTTCCBCCSSSSCEEEETTTCCEECHHHH
T ss_pred CCcCCCCceeeccCCccCEeCCCCCeECHHHh
Confidence 346 6888886445588999999987666554
No 165
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=20.79 E-value=1e+02 Score=20.72 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=14.4
Q ss_pred ccCCCCCCEEEEEEEEeC
Q 029155 128 HLSFRPGDIVRASVLSLG 145 (198)
Q Consensus 128 ~~~~~~GDiV~AkV~s~~ 145 (198)
+..++|||.|..+++..+
T Consensus 10 r~iYrPGetV~~~~~~~~ 27 (102)
T 2p9r_A 10 KSIYKPGQTVKFRVVSMD 27 (102)
T ss_dssp CSEECTTCEEEEEEEEEC
T ss_pred CcccCCCCEEEEEEEEEC
Confidence 577888888888888765
No 166
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.27 E-value=42 Score=17.26 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=11.9
Q ss_pred CeEEeCCCCCEEeee
Q 029155 178 TEMQCPLTGQTEQRK 192 (198)
Q Consensus 178 ~~~~c~~cg~~e~RK 192 (198)
..+.|+.|++.-.++
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 8 RAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCEECSSSSCEECSS
T ss_pred CCeECCCCChhhccC
Confidence 458999999887665
No 167
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=20.09 E-value=1.9e+02 Score=18.86 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=17.7
Q ss_pred CCCCCCCCCEE----------EEEEEEEecceEE
Q 029155 70 HGPVPEPGSVV----------IARVTKVMTRMAS 93 (198)
Q Consensus 70 ~~~~p~vGDiV----------iG~V~~v~~~~~~ 93 (198)
-+...++||-| .|.|.++.++.+.
T Consensus 14 LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~ 47 (69)
T 2do3_A 14 LRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI 47 (69)
T ss_dssp CCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEE
T ss_pred ceeeccCCCeEEEeccEEcCceEEEEEEeCCEEE
Confidence 34456888888 7889998888654
Done!