BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029156
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium
discoideum GN=trappc5 PE=3 SV=1
Length = 186
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 108/176 (61%), Positives = 144/176 (81%)
Query: 12 NVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
N++D+PLSKGK E+++S+FAFLFSE++QY Q ++ ELE++L D GY++G R+LELLC
Sbjct: 7 NIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66
Query: 72 HRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI 131
R+K ++RET+LLGILSF+H+TVWK LFGK ADSLEK TE +DEYMIS+ ++VN+FIS+
Sbjct: 67 VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126
Query: 132 PKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF EV+
Sbjct: 127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVI 182
>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1
Length = 209
Score = 183 bits (465), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 24 EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRL 83
+V+LS+FAF+FSEL+Q Q+QV I E E +L + GY VG +++EL+ R++ +RETR+
Sbjct: 40 DVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRI 99
Query: 84 LGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAF 143
LGIL ++HS+VWK LFGK ADSLEK E DEYMI + L+N+FIS+PK+M NC A+
Sbjct: 100 LGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159
Query: 144 VAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLT 188
+AGI+ G LDSA FP +AH VP+ Q RT ILIK V+
Sbjct: 160 LAGIIEGFLDSAQFPCKASAHSVPL-SQYPYRTVILIKLDPSVIA 203
>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens
GN=TRAPPC5 PE=1 SV=1
Length = 188
Score = 174 bits (440), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 120/177 (67%), Gaps = 7/177 (3%)
Query: 11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL G VGARVL+ L
Sbjct: 10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDAL 69
Query: 71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
R+KG RRET++LG L FV VWK LFGK AD LE+ + + I E+E L+N +IS
Sbjct: 70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129
Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
+PK+ T NC +F AGIV VL +GFPA VTAH+ TT++IKF E V+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVI 179
>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus
GN=TRAPPC5 PE=2 SV=1
Length = 188
Score = 173 bits (438), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 119/177 (67%), Gaps = 7/177 (3%)
Query: 11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V +AEL+ RL G VGARVL+ L
Sbjct: 10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLDAL 69
Query: 71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
R+KG RRET++LG L FV VWK LFGK AD LE+ + + I E+E L+N +IS
Sbjct: 70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129
Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
+PK+ T NC +F AGIV VL +GFPA VTAH+ TT++IKF E V+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVI 179
>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus
GN=Trappc5 PE=1 SV=1
Length = 188
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 119/177 (67%), Gaps = 7/177 (3%)
Query: 11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
S +L++ L + + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL G VGARVL+ L
Sbjct: 10 SALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69
Query: 71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
R+KG RRET++LG L FV VWK LFGK AD LE+ + + I E+E L+N +IS
Sbjct: 70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129
Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
+PK+ T NC +F AGIV VL +GFPA VTAH+ TT++IKF E V+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVI 179
>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus
GN=TRAPPC5 PE=2 SV=1
Length = 188
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 120/178 (67%), Gaps = 7/178 (3%)
Query: 11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
S +L++PL + + EVSLSAFA LF ELVQY Q +V ++AEL+ +L G+ VG R+L+ L
Sbjct: 10 SPLLERPLGRPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPL 69
Query: 71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
R++G RRET++L +L FV VW+ LFGK AD LE+ + + Y + E+E LVN FIS
Sbjct: 70 VSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFIS 129
Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLT 188
+P++ T NC AF AG+V VL ++GFPA VTAH+ TT++IKF E V+
Sbjct: 130 VPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHW-------HKGTTLMIKFEEGVIA 180
>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium
falciparum PE=3 SV=1
Length = 184
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 108/174 (62%), Gaps = 3/174 (1%)
Query: 14 LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
++K L++ KQ+VSLSAF+ LFSE+VQY + +E L + G VG ++ E L ++
Sbjct: 8 IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYK 67
Query: 74 DKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK 133
+K +R ++ IL+F+ VWK LF +D L K + EYMI +K +L+N+FI++PK
Sbjct: 68 NKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPK 125
Query: 134 DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
D G NC AF AGIV G L S+ F A VTAH + EG TTI IKF EV+
Sbjct: 126 DYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPEVV 178
>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium
falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1
Length = 184
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 108/174 (62%), Gaps = 3/174 (1%)
Query: 14 LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
++K L++ KQ+VSLSAF+ LFSE+VQY + +E L + G VG ++ E L ++
Sbjct: 8 IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYK 67
Query: 74 DKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK 133
+K +R ++ IL+F+ VWK LF +D L K + EYMI +K +L+N+FI++PK
Sbjct: 68 NKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPK 125
Query: 134 DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
D G NC AF AGIV G L S+ F A VTAH + EG TTI IKF EV+
Sbjct: 126 DYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPEVV 178
>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1
SV=1
Length = 283
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 75 KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
K RR+ ++L IL F+H T+W LF V+D L K +E ++EYMI + + +F IP +
Sbjct: 168 KMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQF--IPGE 225
Query: 135 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
+C FV GI++G L +AGFP VTAH +P +G RT LI+F +VL
Sbjct: 226 --NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMP-QGGHSQRTVYLIQFDRQVL 275
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
+QE SLSA AFLF E++ + E +L D G+ +G R+LELL R
Sbjct: 54 RQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFR 105
>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1
SV=1
Length = 155
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 17/153 (11%)
Query: 22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
K+EV +S ++L +++Y Q +I E L+ GY VG ++LEL C+ ++ R T
Sbjct: 2 KREVPVSTMSYLVCGMIEYLMEQRSDI---EADLKSIGYEVGIKLLEL-CNFEREVRIST 57
Query: 82 RL----LGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT 137
L +LS V + +V EK + + Y++++ + L +RFIS+P +
Sbjct: 58 LLYRATFDLLSLVSDSDRRV---------EKARDVDRTYLLTDSDGLFSRFISVPDEWNG 108
Query: 138 FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEG 170
+ + V G+++ L ++G+ + VTA P E
Sbjct: 109 LSADSIVCGMIQAALMASGYDSEVTAFPEPSEN 141
>sp|Q99394|TRS33_YEAST Trafficking protein particle complex subunit 33 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS33 PE=1
SV=1
Length = 268
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 54 RLEDAGYAVGARVLELLCHRDKGNRR--ETRLLGILSFVHSTVWKVLFGKVADSLEKGTE 111
RL + G+ +G ++ ELL + N + E LL I+ F+ VWK +FGK D+L+ T
Sbjct: 122 RLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLK--TN 179
Query: 112 HEDEYMISEKELLVNRFISIPKDMGTFNCGA------FVAGIVRGVLDSAGFPA---VVT 162
H + + + + + S+ +D GI+RGVL S G+ + +
Sbjct: 180 HRGTFYLLDYDYRPIQSFSLEEDAKNEELKMIEPFLEIPVGIIRGVLSSLGYSSEEVICL 239
Query: 163 AHFVPVEGQQRPRT 176
A F+ RP+T
Sbjct: 240 ASFID-RPTDRPKT 252
>sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subunit 6B OS=Homo sapiens
GN=TRAPPC6B PE=1 SV=1
Length = 158
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54 RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
+LE+ G+ VG ++E K R L I+ F+ W +F K D+L T H+
Sbjct: 35 KLENMGFRVGQGLIERF---TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 89
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
Y++ + + + +S K AF G++RG L + G ++VTA
Sbjct: 90 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141
>sp|Q32L78|TPC6B_BOVIN Trafficking protein particle complex subunit 6B OS=Bos taurus
GN=TRAPPC6B PE=2 SV=1
Length = 158
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54 RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
+LE+ G+ VG ++E K R L I+ F+ W +F K D+L T H+
Sbjct: 35 KLENMGFRVGQGLIERF---TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 89
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
Y++ + + + +S K AF G++RG L + G ++VTA
Sbjct: 90 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141
>sp|Q3T086|TPC6A_BOVIN Trafficking protein particle complex subunit 6A OS=Bos taurus
GN=TRAPPC6A PE=2 SV=1
Length = 159
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 24/147 (16%)
Query: 30 FAFLFSELVQYNQTQVDNIAELERR-----LEDAGYAVGARVLELLCHRDKGNRRETRLL 84
F FL +E+V Q + ++ LE G+ VG + E L R E L
Sbjct: 7 FEFLHTEMVAELWAQDPDPGPGGQKTSLLVLEGMGFRVGQALGERLPRETLTFREE---L 63
Query: 85 GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKEL-LVNRFIS-------IPKDMG 136
IL F+ +W +F K DSL T H+ Y++ + L+ R S PK +
Sbjct: 64 DILKFLCKDLWVAVFHKQMDSLR--TNHQGTYVLQDNSFPLLVRMASGLQYLEEAPKFL- 120
Query: 137 TFNCGAFVAGIVRGVLDSAGFPAVVTA 163
AF G++RG L + G ++VTA
Sbjct: 121 -----AFTCGLLRGTLSTLGVKSLVTA 142
>sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B OS=Mus musculus
GN=Trappc6b PE=2 SV=1
Length = 158
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 30 FAFLFSELVQ-----YNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLL 84
F L +E+V Q +V+N +LE G+ VG ++E K R L
Sbjct: 7 FLLLHNEMVSGVYKSAEQGEVEN-GRCVTKLESMGFRVGQGLIERF---TKDTARFKDEL 62
Query: 85 GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCG--A 142
I+ F+ W +F K D+L T H+ Y++ + + + +S K A
Sbjct: 63 DIMKFICKDFWTTVFKKQIDNLR--TNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLA 120
Query: 143 FVAGIVRGVLDSAGFPAVVTA 163
F G++RG L + G ++VTA
Sbjct: 121 FTCGLIRGGLSNLGIKSIVTA 141
>sp|O75865|TPC6A_HUMAN Trafficking protein particle complex subunit 6A OS=Homo sapiens
GN=TRAPPC6A PE=1 SV=2
Length = 159
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 55 LEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHED 114
LE G+ VG + E L R E L +L F+ +W +F K DSL T H+
Sbjct: 37 LEGMGFRVGQALGERLPRETLAFREE---LDVLKFLCKDLWVAVFQKQMDSLR--TNHQG 91
Query: 115 EYMISEKELLVNRF-ISIPKDMG------TFNCGAFVAGIVRGVLDSAGFPAVVTA 163
Y++ + N F + +P G AF G++RG L + G +VVTA
Sbjct: 92 TYVLQD-----NSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTA 142
>sp|Q78XR0|TPC6A_MOUSE Trafficking protein particle complex subunit 6A OS=Mus musculus
GN=Trappc6a PE=2 SV=1
Length = 159
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 30 FAFLFSELV-QYNQTQVDNIAELERR----LEDAGYAVGARVLELLCHRDKGNRRETRLL 84
F FL +E+V + D + +RR LE G+ VG + E L R E L
Sbjct: 7 FEFLHTEMVAELWAPDPDPGSGGKRRSLSVLEGLGFRVGQALGERLPLETPAFREE---L 63
Query: 85 GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKE--LLVNR------FISIPKDMG 136
L F+ +W +F K D L T H+ Y++ + LLV PK +
Sbjct: 64 DALKFLCRDLWAAMFQKHMDGLR--TNHQGTYVLQDNSFPLLVTMGSGPQYLEEAPKFL- 120
Query: 137 TFNCGAFVAGIVRGVLDSAGFPAVVTA 163
AF G++ G L + GF ++VTA
Sbjct: 121 -----AFTCGLLCGALHTLGFQSLVTA 142
>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus
GN=Trappc3 PE=2 SV=1
Length = 180
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 14 LDKPLSKGKQEVSLSA--FAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
+ + ++G + +S+ F + LV +N ++ ++L+ GY +G R++E
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFL 60
Query: 72 HRDKGNR----RETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEY-MISEKELLVN 126
R R RET + +K+ G + S+ + DE+ +I E LV+
Sbjct: 61 ARSNVGRCHDFRET-----ADVIAKVAFKMYLG-ITPSITNWSPAGDEFSLILENNPLVD 114
Query: 127 RFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFV 166
F+ +P + + G++RG L+ V A FV
Sbjct: 115 -FVELPDNHSALIYSNLLCGVLRGALEMVQM--AVEAKFV 151
>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus
GN=Trappc3 PE=1 SV=1
Length = 180
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 14 LDKPLSKGKQEVSLSA--FAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
+ + ++G + +S+ F + LV +N ++ ++L+ GY +G R++E
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFL 60
Query: 72 HRDKGNR----RETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEY-MISEKELLVN 126
R R RET + +K+ G + S+ + DE+ +I E LV+
Sbjct: 61 ARSNVGRCHDFRET-----ADVIAKVAFKMYLG-ITPSITNWSPAGDEFSLILENNPLVD 114
Query: 127 RFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFV 166
F+ +P + + G++RG L+ V A FV
Sbjct: 115 -FVELPDNHSALIYSNLLCGVLRGALEMVQM--AVEAKFV 151
>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus
GN=TRAPPC3 PE=2 SV=1
Length = 180
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 30 FAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNR----RETRLLG 85
F + LV +N ++ ++L+ GY +G R++E R R RET
Sbjct: 19 FTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET---- 74
Query: 86 ILSFVHSTVWKVLFGKVADSLEKGTEHEDEY-MISEKELLVNRFISIPKDMGTFNCGAFV 144
+ +K+ G + S+ + DE+ +I E LV+ F+ +P + + +
Sbjct: 75 -ADVIAKIAFKMYLG-ITPSITNWSPGGDEFSLILENNPLVD-FVELPDNHSSLIYSNLL 131
Query: 145 AGIVRGVLD 153
G++RG L+
Sbjct: 132 CGVLRGALE 140
>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo
sapiens GN=BET3L PE=1 SV=1
Length = 181
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Query: 23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR 82
+++ F + LV + ++ + L+ GY +G R++E R R +
Sbjct: 12 HKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHS- 70
Query: 83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEY-MISEKELLVNRFISIPKDMGTFNCG 141
I+ + +K+ G + S+ ++E+ +I EK LV +P +
Sbjct: 71 YSEIIDIIAQVAFKMYLG-ITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYC 129
Query: 142 AFVAGIVRGVLDSAGFPAVVT 162
+ GI+RG L+ A VT
Sbjct: 130 NLLCGIIRGALEMVHLAADVT 150
>sp|Q09784|YA95_SCHPO Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC13G6.05c PE=1 SV=3
Length = 253
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 55 LEDAGYAVGARVLE-LLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
LE G+ VG ++ E LL +R+ R T ++ F+ +W ++F K D+L+ T
Sbjct: 51 LESIGFQVGRKITERLLLNRN----RITETTDVMRFLCRELWPIVFRKPLDNLK--TNRR 104
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG------AFVAGIVRGVLDSAGFPAVVTAH 164
+++++ F + GT F +G +RGV+ + G+ A V A
Sbjct: 105 GIFVLTDTYFYW--FTKMTAMTGTEMAQITTPYFYFPSGFIRGVVYTFGYSAQVIAQ 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,609,996
Number of Sequences: 539616
Number of extensions: 2896447
Number of successful extensions: 6709
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6686
Number of HSP's gapped (non-prelim): 25
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)