Query 029156
Match_columns 198
No_of_seqs 116 out of 531
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00391 transport protein par 100.0 6.6E-60 1.4E-64 384.2 17.7 166 25-193 1-167 (168)
2 KOG3315 Transport protein part 100.0 4.2E-57 9.1E-62 363.9 15.7 186 3-194 5-190 (191)
3 PF04051 TRAPP: Transport prot 100.0 9.4E-50 2E-54 319.8 16.7 151 29-185 1-152 (152)
4 COG5128 Transport protein part 100.0 1.3E-49 2.7E-54 320.6 13.0 182 10-192 25-206 (208)
5 KOG3316 Transport protein part 100.0 4.6E-45 1E-49 289.3 12.0 148 27-184 4-162 (163)
6 KOG3330 Transport protein part 100.0 1.8E-35 4E-40 236.0 9.3 165 20-188 11-176 (183)
7 COG1719 Predicted hydrocarbon 95.3 0.53 1.1E-05 38.0 11.9 112 50-184 46-157 (158)
8 TIGR02019 BchJ bacteriochlorop 89.2 2.2 4.7E-05 35.7 7.6 132 23-180 42-188 (188)
9 PF02830 V4R: V4R domain; Int 78.6 2.9 6.3E-05 28.2 3.2 41 139-181 20-61 (62)
10 PF09536 DUF2378: Protein of u 76.1 5.3 0.00012 33.0 4.7 38 139-181 138-176 (178)
11 TIGR02265 Mxa_TIGR02265 Myxoco 70.6 8.3 0.00018 32.0 4.6 38 139-181 139-177 (179)
12 PF06505 XylR_N: Activator of 55.9 51 0.0011 24.8 6.2 43 24-71 24-66 (103)
13 COG2345 Predicted transcriptio 55.8 96 0.0021 26.6 8.5 149 3-184 63-215 (218)
14 PRK14741 spoVM stage V sporula 45.1 15 0.00032 20.9 1.3 15 142-156 10-24 (26)
15 smart00843 Ftsk_gamma This dom 42.4 66 0.0014 22.2 4.5 41 32-72 5-45 (63)
16 PF11565 PorB: Alpha helical P 38.1 25 0.00055 26.5 2.0 19 139-157 16-34 (98)
17 PF09413 DUF2007: Domain of un 38.0 26 0.00057 23.4 2.0 50 141-191 8-59 (67)
18 KOG0037 Ca2+-binding protein, 37.0 1.2E+02 0.0025 26.2 6.1 77 22-101 108-194 (221)
19 TIGR01634 tail_P2_I phage tail 36.2 75 0.0016 25.2 4.6 37 145-183 78-114 (139)
20 PF09397 Ftsk_gamma: Ftsk gamm 33.5 70 0.0015 22.2 3.5 40 33-72 7-46 (65)
21 PF05266 DUF724: Protein of un 31.0 1.8E+02 0.004 24.2 6.3 52 23-74 41-103 (190)
22 COG4009 Uncharacterized protei 28.2 41 0.00089 24.6 1.7 19 46-64 60-78 (88)
23 PF10026 DUF2268: Predicted Zn 24.3 34 0.00074 28.2 0.8 19 56-74 160-178 (195)
24 PF11848 DUF3368: Domain of un 22.9 88 0.0019 19.9 2.4 26 47-72 20-45 (48)
25 PF13314 DUF4083: Domain of un 22.5 2E+02 0.0044 19.6 4.1 30 29-58 18-51 (58)
26 PF08183 SpoV: Stage V sporula 21.6 60 0.0013 18.6 1.2 15 142-156 10-24 (26)
No 1
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=100.00 E-value=6.6e-60 Score=384.22 Aligned_cols=166 Identities=52% Similarity=0.805 Sum_probs=159.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccc
Q 029156 25 VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVAD 104 (198)
Q Consensus 25 Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D 104 (198)
||+|+|+|||+|||+|+++++++.+|++++|+.+||+||.||+|++..|++..+|+++++++|+|||+++|+.+||||+|
T Consensus 1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD 80 (168)
T PTZ00391 1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD 80 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence 79999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred cccccc-CCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEec
Q 029156 105 SLEKGT-EHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFA 183 (198)
Q Consensus 105 ~Le~~t-n~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~ 183 (198)
+| +| +|+|+|||+|++|++++++|+|+++++++|++|+||||||||+++||+|+||||+++++..+. +|+|.|||+
T Consensus 81 ~L--kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~-~t~~likf~ 157 (168)
T PTZ00391 81 LL--KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNF-STTILIKFY 157 (168)
T ss_pred hh--cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCC-ceEEEEEec
Confidence 99 56 588999999999999999999999999999999999999999999999999999998776533 999999999
Q ss_pred hHHHhhhhhh
Q 029156 184 EEVLTSFSLI 193 (198)
Q Consensus 184 ~~v~~re~~~ 193 (198)
++|++||+++
T Consensus 158 ~~v~~Re~~~ 167 (168)
T PTZ00391 158 PEVIEREKSI 167 (168)
T ss_pred HHHHHHHhhc
Confidence 9999999975
No 2
>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-57 Score=363.92 Aligned_cols=186 Identities=59% Similarity=0.942 Sum_probs=178.5
Q ss_pred ccCCCCCCCccccccCccCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccc
Q 029156 3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR 82 (198)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~ 82 (198)
..+....+++|||+||.+++.|||.|+|+|||+|||+|+++++.++.|++.+|.+.||+||.||+|.+..|+|.++|+++
T Consensus 5 ~~s~~~~~s~il~~~L~~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREtk 84 (191)
T KOG3315|consen 5 KASTMRIPSNILDKSLSKGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRETK 84 (191)
T ss_pred cccccccccchhhhhhhccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHHH
Confidence 34455668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEE
Q 029156 83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVT 162 (198)
Q Consensus 83 ~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vt 162 (198)
++++|.||+.++||.+|||.+|+|||.+++..+|+|+|++|++++|||+|++++.+||++|+||||+|+|.+.||||.||
T Consensus 85 ilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVT 164 (191)
T KOG3315|consen 85 ILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVT 164 (191)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCceEEEEEechHHHhhhhhhh
Q 029156 163 AHFVPVEGQQRPRTTILIKFAEEVLTSFSLIV 194 (198)
Q Consensus 163 a~~~~~~~~~~p~~~f~Ik~~~~v~~re~~~~ 194 (198)
||+.| .+|++.|||+++|++||++++
T Consensus 165 Ah~~P------~gt~~~IkF~~~Viare~~l~ 190 (191)
T KOG3315|consen 165 AHWHP------EGTTYLIKFDESVIAREGLLE 190 (191)
T ss_pred eeecC------CCCeEEEEecHHHHhhhhhhc
Confidence 99985 269999999999999999875
No 3
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=100.00 E-value=9.4e-50 Score=319.76 Aligned_cols=151 Identities=46% Similarity=0.785 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 029156 29 AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEK 108 (198)
Q Consensus 29 ~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~ 108 (198)
+|+|||+|||+|++++. +.++++++|++|||+||.||+|+++.+.+..+|+++++|+++||||++|+++||||+|+|
T Consensus 1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l-- 77 (152)
T PF04051_consen 1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNL-- 77 (152)
T ss_dssp HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEE--
T ss_pred CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccc--
Confidence 69999999999999944 899999999999999999999999999667899999999999999999999999999999
Q ss_pred ccCC-CCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechH
Q 029156 109 GTEH-EDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185 (198)
Q Consensus 109 ~tn~-~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~ 185 (198)
++|| +|+|+|+|++|+|++++++|++++.++|++|+||||||||+++||+|+|||+..+. ..|+|+|+|||++.
T Consensus 78 ~~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~---~~~~~~f~Ik~~~~ 152 (152)
T PF04051_consen 78 KTNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPL---NGPQTTFQIKFEKQ 152 (152)
T ss_dssp EEETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCC---GTTEEEEEEEEEHH
T ss_pred cccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEecc---CCCCeEEEEEEecC
Confidence 7888 99999999999999999999988899999999999999999999999999999854 24799999999864
No 4
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-49 Score=320.63 Aligned_cols=182 Identities=40% Similarity=0.685 Sum_probs=174.9
Q ss_pred CCccccccCccCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHH
Q 029156 10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSF 89 (198)
Q Consensus 10 ~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkf 89 (198)
...||+++|.-.+.+||.|+|+|||.||++|+++..+...|+|.+|.++||+||.||+|++..|.++.+|+.+++++++|
T Consensus 25 ~~~vy~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq~ 104 (208)
T COG5128 25 GKSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQR 104 (208)
T ss_pred chhHHHHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHHH
Confidence 56789999966679999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCC
Q 029156 90 VHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVE 169 (198)
Q Consensus 90 I~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~ 169 (198)
|+.++|+++||+..|.|||..+..++|+|+||+|++++|||+|+++++++|.+|+||||+|+|.+.||+|.||||..|.+
T Consensus 105 ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~~ 184 (208)
T COG5128 105 IHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSE 184 (208)
T ss_pred HHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCceEEEEEechHHHhhhhh
Q 029156 170 GQQRPRTTILIKFAEEVLTSFSL 192 (198)
Q Consensus 170 ~~~~p~~~f~Ik~~~~v~~re~~ 192 (198)
..++ +|+|+|++++.|++||..
T Consensus 185 ~~p~-Rtv~lI~~d~~vi~re~v 206 (208)
T COG5128 185 NLPN-RTVFLIRIDDLVIAREEV 206 (208)
T ss_pred CCCc-ceEEEEEecHHHHhhhhh
Confidence 7666 999999999999999976
No 5
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-45 Score=289.30 Aligned_cols=148 Identities=26% Similarity=0.415 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCC---------hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH
Q 029156 27 LSAFAFLFSELVQYNQTQVDN---------IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV 97 (198)
Q Consensus 27 ~s~f~~L~~EiV~y~~~~~~~---------~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~ 97 (198)
.-+|++|+.|||.++.+..+| ..+..++||.|||+||++|.|+++ ++++|+.|.+|+|||||||+|+.
T Consensus 4 ~v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~---~e~~rf~deLeimKFiCkDfW~~ 80 (163)
T KOG3316|consen 4 EVLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT---RERNRFKDELEIMKFICKDFWSI 80 (163)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHH
Confidence 346999999999998886443 234779999999999999999999 56889999999999999999999
Q ss_pred hhcccccccccccCCCCeEEEEeCCcccccccccCCCCCC--ccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCc
Q 029156 98 LFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT--FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPR 175 (198)
Q Consensus 98 lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~--l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~ 175 (198)
+|+||+||| +|||+|+||++|+.|+|++.+|...++.. ..|++|+||+|||+|.+||++|.|||++. ..|.
T Consensus 81 VF~KQiDNL--rTNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~-----slPt 153 (163)
T KOG3316|consen 81 VFKKQIDNL--RTNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS-----SLPT 153 (163)
T ss_pred HHhhhhhhc--cccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC-----CCCc
Confidence 999999999 99999999999999999998886665532 36999999999999999999999999997 6899
Q ss_pred eEEEEEech
Q 029156 176 TTILIKFAE 184 (198)
Q Consensus 176 ~~f~Ik~~~ 184 (198)
|.|+|++.+
T Consensus 154 ckFhV~v~~ 162 (163)
T KOG3316|consen 154 CKFHVQVQP 162 (163)
T ss_pred eEEEEEecC
Confidence 999999875
No 6
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=236.03 Aligned_cols=165 Identities=15% Similarity=0.295 Sum_probs=150.1
Q ss_pred cCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156 20 KGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF 99 (198)
Q Consensus 20 ~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF 99 (198)
+...++|+++|.++|++||.++++++++.++++++|++|||+||.||+|.+++|+ .-+||.|+.++...|||..+|+++
T Consensus 11 ~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks-~vpRC~dfretaevlak~afkmyL 89 (183)
T KOG3330|consen 11 KKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKS-NVPRCVDFRETAEVLAKVAFKMYL 89 (183)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhc-CCchhhhHHHHHHHHHHhhhheee
Confidence 3457899999999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred cccccccccccCCCCeEEEEeCCcccccccccCC-CCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEE
Q 029156 100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPK-DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTI 178 (198)
Q Consensus 100 gk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~-~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f 178 (198)
|.++..- .|+.+.++|.|+=.++|+..||+.|+ ..+.|+|++++||+|||||+++.++|+|+ |..|-++++..|.+
T Consensus 90 gitpsit-swss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~--f~~d~lrGd~~tEI 166 (183)
T KOG3330|consen 90 GITPSIT-SWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVV--FLSDTLRGDSVTEI 166 (183)
T ss_pred eccccee-eecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheee--eeeehhcCCCceee
Confidence 9988766 37888899998766666689996665 45679999999999999999999999998 89999999999999
Q ss_pred EEEechHHHh
Q 029156 179 LIKFAEEVLT 188 (198)
Q Consensus 179 ~Ik~~~~v~~ 188 (198)
+|+|.+.+-+
T Consensus 167 rv~f~r~lkd 176 (183)
T KOG3330|consen 167 RVRFLRILKD 176 (183)
T ss_pred eeeHHHHHhh
Confidence 9999987754
No 7
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]
Probab=95.29 E-value=0.53 Score=38.03 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCccccccc
Q 029156 50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFI 129 (198)
Q Consensus 50 e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~v 129 (198)
.....+.++|+.+|..++. .....++..|+.. |....+.-.+.- .+...+..+.|..+. -
T Consensus 46 ~~~~~~y~~G~~~G~~l~~-----------~~~~~~~~~f~~~--~~~~~~~v~~~~---~~~~~~v~v~~c~~c----~ 105 (158)
T COG1719 46 GAEPVLYEAGKEIGKALIK-----------EKLIEELENFLEF--WEEVGGGVLEVE---EEEPLVVEVYDCIEC----A 105 (158)
T ss_pred CcHHHHHHHHHHHHHHhcc-----------hhchHHHHHHHHH--HHhhcceEEEcc---cCCCceEEEEcCchh----h
Confidence 4567788899999999886 1122334444433 888777655433 222455555555543 1
Q ss_pred ccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029156 130 SIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184 (198)
Q Consensus 130 s~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~ 184 (198)
-+|. .+-+-+.|.+|+|.|+|+...=+-. .++=+.....+.+.|.|.|+...
T Consensus 106 ~~p~--~~ePvC~~~aG~iag~l~~~~~k~~-~v~Et~C~~~G~~~C~F~i~~~~ 157 (158)
T COG1719 106 GLPG--IGEPVCHLEAGFIAGFLEEILGKKV-EVEETECAAEGDDRCVFEIRLKD 157 (158)
T ss_pred cCCC--CCCcchhHHhhHHHHHHHHHhCCCe-EEEEEEEeecCCCceEEEEEecC
Confidence 2444 2346788999999999998743322 22233344557889999998753
No 8
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=89.18 E-value=2.2 Score=35.74 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=72.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHH-HHHhhhhcCCCCCccchHHHH-------HHHHHHH
Q 029156 23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV-LELLCHRDKGNRRETRLLGIL-------SFVHSTV 94 (198)
Q Consensus 23 ~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL-iE~l~~r~k~~~r~~~~ld~l-------kfI~k~~ 94 (198)
.=|+++.|.-|+..+=..+ ..+....-|.+.|.+.|.++ ..++-. ...+..+.++.. .-|.|++
T Consensus 42 ~mv~E~~~~aL~~aL~~el-----G~~aa~~vl~~~G~~ta~y~l~~rIp~---~~q~~Lr~lp~~~~~r~l~~aI~k~a 113 (188)
T TIGR02019 42 GMLPESQFSTLHRWLRDTL-----GETAAARLLRESGLATADYILANRIPP---PAQRLIRALPAGLAARVLLTAIAKHA 113 (188)
T ss_pred hcCCHHHHHHHHHHHHHHh-----CHHHHHHHHHHHhHHHHHHHHHHHhhH---HHHHHHHHCChHHHHHHHHHHHHHHH
Confidence 4477777777766553221 22345566777787777777 444331 112333444433 3458899
Q ss_pred HHHhhcccccccccccCCCCeEEEEeCCccccccc------ccCCCCCCccchhhhHHHHHHHhhhC-CCCeEEEEEEcc
Q 029156 95 WKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFI------SIPKDMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFVP 167 (198)
Q Consensus 95 Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~v------s~p~~~~~l~y~af~~GiIrGaL~~l-g~~~~Vta~~~~ 167 (198)
|+.- .-|.|-.....|+..+-- ..|. +..-++|-+|+++|.++.+ +=++.|. =+.
T Consensus 114 Wtf~-------------G~G~fs~~~~~~l~i~I~ds~~a~~~~~---~~P~C~~~aGife~lFs~lv~~~~~v~--Et~ 175 (188)
T TIGR02019 114 WTFA-------------GSGKFRYVSGPPLSFEIARNPVVAGESS---DTPVCHWYAAVFERLLRRLVWPHVAVR--ETA 175 (188)
T ss_pred Hhhc-------------ccceEEEeeCCCeEEEEecChhhhcCCC---CCceeeeeHHHHHHHHHHHhCCCceEE--eeh
Confidence 9432 123333333333321100 1111 3345779999999999876 6666654 233
Q ss_pred CCCCCCCceEEEE
Q 029156 168 VEGQQRPRTTILI 180 (198)
Q Consensus 168 ~~~~~~p~~~f~I 180 (198)
..-.+.+.|.|.|
T Consensus 176 C~a~G~~~C~F~~ 188 (188)
T TIGR02019 176 CCAKGAPRCRFEL 188 (188)
T ss_pred HhhcCCCcceeeC
Confidence 4445778999864
No 9
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=78.58 E-value=2.9 Score=28.16 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=27.1
Q ss_pred cchhhhHHHHHHHhhhC-CCCeEEEEEEccCCCCCCCceEEEEE
Q 029156 139 NCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVEGQQRPRTTILIK 181 (198)
Q Consensus 139 ~y~af~~GiIrGaL~~l-g~~~~Vta~~~~~~~~~~p~~~f~Ik 181 (198)
.-..|.+|++.|+++.+ |-+..|+ =+.-...+++.|.|.|+
T Consensus 20 p~C~~~~G~~~G~~~~~~~~~~~v~--E~~C~a~G~~~C~F~i~ 61 (62)
T PF02830_consen 20 PVCWFTAGYLAGFFSALFGKEVEVE--ETKCQAMGDDHCEFVIR 61 (62)
T ss_dssp ---HHHHHHHHHHHHHHHSSEEEEE--EEE-GGGT-SSEEEEEE
T ss_pred ceEHHHHHHHHHHHHHHhCCceEEE--EeEEEcCCCCeeEEEEE
Confidence 45689999999999765 5555554 33455568889999986
No 10
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=76.13 E-value=5.3 Score=32.99 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=29.6
Q ss_pred cchhhhHHHHHHHhhhCCCCe-EEEEEEccCCCCCCCceEEEEE
Q 029156 139 NCGAFVAGIVRGVLDSAGFPA-VVTAHFVPVEGQQRPRTTILIK 181 (198)
Q Consensus 139 ~y~af~~GiIrGaL~~lg~~~-~Vta~~~~~~~~~~p~~~f~Ik 181 (198)
..-.|.+|+++|+|...|-+. .|...-. +...|+|.|.
T Consensus 138 ~~p~f~~G~l~~~L~~~Ga~~~~V~~~~~-----~~~~~~y~i~ 176 (178)
T PF09536_consen 138 MPPAFHEGVLEAALEAAGARGPRVRVRER-----GGDDAEYRIR 176 (178)
T ss_pred CChHHHHHHHHHHHHHcCCCCCEEEEEec-----CCCceEEEEE
Confidence 366799999999999999994 7764432 3458999885
No 11
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=70.59 E-value=8.3 Score=31.97 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=28.3
Q ss_pred cchhhhHHHHHHHhhhCC-CCeEEEEEEccCCCCCCCceEEEEE
Q 029156 139 NCGAFVAGIVRGVLDSAG-FPAVVTAHFVPVEGQQRPRTTILIK 181 (198)
Q Consensus 139 ~y~af~~GiIrGaL~~lg-~~~~Vta~~~~~~~~~~p~~~f~Ik 181 (198)
...+|.+|+++|+|+..| -...|...-. +...|+|.|.
T Consensus 139 ~~~~f~~G~l~~aLe~~Ga~~~~V~~~~~-----g~~~~~y~i~ 177 (179)
T TIGR02265 139 MPPAYHEGVLHAALRAVGARDVRVRGRAF-----GGLDATYRLS 177 (179)
T ss_pred CchHHHHHHHHHHHHHcCCCCCEEEEEec-----CCCCceEEEE
Confidence 358999999999999999 3356653332 3458999886
No 12
>PF06505 XylR_N: Activator of aromatic catabolism; InterPro: IPR010523 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to IPR004096 from INTERPRO.
Probab=55.86 E-value=51 Score=24.83 Aligned_cols=43 Identities=30% Similarity=0.231 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhh
Q 029156 24 EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71 (198)
Q Consensus 24 ~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~ 71 (198)
-+..+++..|.-|+|..+= .+....-|-++||.-|.|-+|.+.
T Consensus 24 L~~~~alg~LRkELi~~lG-----~~~AR~iltR~Gy~~G~~DAe~~~ 66 (103)
T PF06505_consen 24 LMHASALGALRKELIETLG-----EERARGILTRMGYASGWRDAELAR 66 (103)
T ss_pred EEchhHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999997642 234668899999999999999987
No 13
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=55.85 E-value=96 Score=26.55 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=74.0
Q ss_pred ccCCCCCCCccccccCccCccchhHHHHHHHHHHHHHHHHhhcC---ChHHHHHHHHHhhhhhhHHHHHHhhhhcCC-CC
Q 029156 3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVD---NIAELERRLEDAGYAVGARVLELLCHRDKG-NR 78 (198)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~---~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~-~~ 78 (198)
||||++--..+.++.. +.|..-|+++...+.+..+ +.+.++.-|++.+-.+| +.+...-.+ ..
T Consensus 63 g~GRP~~~y~Lt~~g~---------~~f~~~y~~l~~~~l~~l~~~~G~~~l~~~l~~r~~~~~----~~~~~~~~~~~~ 129 (218)
T COG2345 63 GRGRPAKLYRLTEKGR---------EQFPKRYGELALALLDALEETGGEEALNAFLEKRAQAIG----AQYRPAMGGDAD 129 (218)
T ss_pred CCCCCceeeeecccch---------hhcchhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHhhcCCCCCC
Confidence 4566665544444433 3666666666665555432 23445555555544444 333321111 22
Q ss_pred CccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCC
Q 029156 79 RETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFP 158 (198)
Q Consensus 79 r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~ 158 (198)
...++.-.+..+.+. |--+. + .+-..|.|.|..+|=|+. .+.++.. .-++.-+++++++|-. ..
T Consensus 130 ~ee~~e~Lv~l~~~~------gy~~e-~--~~~~~~~~~l~e~nCPi~---~vA~~~~--~~C~~e~~~~~~~Lg~--~~ 193 (218)
T COG2345 130 LEEKVERLVELLSDL------GYMPE-L--RPVDNGRVQLIEHNCPIS---AVAEEFP--VACESELALFAEVLGT--AH 193 (218)
T ss_pred HHHHHHHHHHHHHhC------Ccccc-c--cccCCCceEEEecCCchH---HHHHHhH--HHHHHHHHHHHHHhcc--CC
Confidence 222222233322222 22221 1 122368888887765533 2222211 2345567777877765 55
Q ss_pred eEEEEEEccCCCCCCCceEEEEEech
Q 029156 159 AVVTAHFVPVEGQQRPRTTILIKFAE 184 (198)
Q Consensus 159 ~~Vta~~~~~~~~~~p~~~f~Ik~~~ 184 (198)
.+.+++... +...|+|.|+..+
T Consensus 194 v~~~~~~~~----g~~~C~~~v~~~~ 215 (218)
T COG2345 194 VERTEHILD----GPGRCTYHVKLES 215 (218)
T ss_pred ccceeeeec----CCCceEEEeecCC
Confidence 555555652 4569999998754
No 14
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=45.11 E-value=15 Score=20.93 Aligned_cols=15 Identities=47% Similarity=0.724 Sum_probs=12.4
Q ss_pred hhhHHHHHHHhhhCC
Q 029156 142 AFVAGIVRGVLDSAG 156 (198)
Q Consensus 142 af~~GiIrGaL~~lg 156 (198)
-|+.|+||++|.++.
T Consensus 10 kflgg~vra~l~~fk 24 (26)
T PRK14741 10 KFLGGIVRAMLGSFK 24 (26)
T ss_pred HHHHHHHHHHHHHhc
Confidence 478999999998753
No 15
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=42.40 E-value=66 Score=22.22 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 029156 32 FLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCH 72 (198)
Q Consensus 32 ~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~ 72 (198)
=||-+.+++..+...-....-++=-++||+=..||+|.+-.
T Consensus 5 ~ly~~a~~~V~~~~~~S~S~lQR~~~IGynrAariid~lE~ 45 (63)
T smart00843 5 ELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEE 45 (63)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHhcchhHHHHHHHHHHH
Confidence 47888888877765433344455567999999999999885
No 16
>PF11565 PorB: Alpha helical Porin B; InterPro: IPR021114 This entry represents the putative cell wall channel-forming proteins porin B and porin C from Corynebacterium sp. Porin B from Corynebacterium glutamicum (Brevibacterium flavum) allows the exchange of material across the mycolic acid layer, which is the protective nonpolar barrier. Porin B has an alpha helical core structure consisting of four alpha-helices surrounding a nonpolar interior. There is a disulphide bridge between helices 1 and 4 to form a stable covalently bound ring []. The channel of PorB is oligomeric [].; PDB: 2VQG_G 2VQL_C 2VQK_A 2VQH_A.
Probab=38.06 E-value=25 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.4
Q ss_pred cchhhhHHHHHHHhhhCCC
Q 029156 139 NCGAFVAGIVRGVLDSAGF 157 (198)
Q Consensus 139 ~y~af~~GiIrGaL~~lg~ 157 (198)
-+..+-||++|++|...|+
T Consensus 16 ~i~~~dC~~lr~~L~~~Gl 34 (98)
T PF11565_consen 16 LIDNADCGILRTGLKATGL 34 (98)
T ss_dssp GGSHHHHHHHHHHHHHTT-
T ss_pred ccCcccccHHHhhhhhhcc
Confidence 3788999999999999983
No 17
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=38.04 E-value=26 Score=23.39 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHhhhCCCCeEEEEEEccCCCCC-CCc-eEEEEEechHHHhhhh
Q 029156 141 GAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQ-RPR-TTILIKFAEEVLTSFS 191 (198)
Q Consensus 141 ~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~-~p~-~~f~Ik~~~~v~~re~ 191 (198)
..+-|.+|++.|++-|++|.|.-+....- .+ .|. +-..|.+.++=.+|=+
T Consensus 8 ~~~ea~~i~~~L~~~gI~~~v~~~~~~~~-~g~~g~~~~~~v~V~~~d~~~A~ 59 (67)
T PF09413_consen 8 DPIEAELIKGLLEENGIPAFVKNEHMSGY-AGEPGTGGQVEVYVPEEDYERAR 59 (67)
T ss_dssp -HHHHHHHHHHHHHTT--EE--S----SS----S--SSSEEEEEEGGGHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCccchh-hcccCccCceEEEECHHHHHHHH
Confidence 35679999999999999999864433221 11 111 2267777665444433
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=37.02 E-value=1.2e+02 Score=26.18 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=54.1
Q ss_pred ccchhHHHHHHHHHHHHHH--HHhhcC-------ChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCc-cchHHHHHHHH
Q 029156 22 KQEVSLSAFAFLFSELVQY--NQTQVD-------NIAELERRLEDAGYAVGARVLELLCHRDKGNRRE-TRLLGILSFVH 91 (198)
Q Consensus 22 ~~~Vs~s~f~~L~~EiV~y--~~~~~~-------~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~-~~~ld~lkfI~ 91 (198)
..+|+-.-|..|+.-|=+| +-++.+ +..|+.+-|..|||++-.-+.+.+.-|- .+. ..-+..-+||.
T Consensus 108 ~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky---d~~~~g~i~FD~FI~ 184 (221)
T KOG0037|consen 108 SGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKY---DRFGGGRIDFDDFIQ 184 (221)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHh---ccccCCceeHHHHHH
Confidence 3568999999999988776 333332 3578999999999999999999998653 122 33445556666
Q ss_pred HHHHHHhhcc
Q 029156 92 STVWKVLFGK 101 (198)
Q Consensus 92 k~~Wk~lFgk 101 (198)
=-+|..-+-+
T Consensus 185 ccv~L~~lt~ 194 (221)
T KOG0037|consen 185 CCVVLQRLTE 194 (221)
T ss_pred HHHHHHHHHH
Confidence 6666654433
No 19
>TIGR01634 tail_P2_I phage tail protein, P2 protein I family. This model represents the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria. This alignment is built as a fragment model and identifies some phage tail proteins with strong but local similarity to members of the seed alignment.
Probab=36.21 E-value=75 Score=25.23 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=25.9
Q ss_pred HHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEec
Q 029156 145 AGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFA 183 (198)
Q Consensus 145 ~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~ 183 (198)
.+.||-+|+.+|...+|+ ++-...+.+.|. +|.|.+.
T Consensus 78 ~~avr~~l~~lg~~~~i~-EW~e~~p~g~P~-tF~i~~~ 114 (139)
T TIGR01634 78 IGAVRRVVEPFGGIVNIT-EWWQTGPPGPPG-TFELTLT 114 (139)
T ss_pred HHHHHHHHHHcCCCeEEe-ehhccCCCCCCe-EEEEEEE
Confidence 466788999999999987 554444334544 7887754
No 20
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=33.49 E-value=70 Score=22.15 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 029156 33 LFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCH 72 (198)
Q Consensus 33 L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~ 72 (198)
||-+.+++......-....-++=-++||+=..||+|.+-.
T Consensus 7 ly~~a~~~V~~~~~~S~S~lQR~~rIGynrAariid~LE~ 46 (65)
T PF09397_consen 7 LYEEAVEFVIEEGKASISLLQRKFRIGYNRAARIIDQLEE 46 (65)
T ss_dssp THHHHHHHHHHCTCECHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6777788877654433344556668999999999999874
No 21
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.02 E-value=1.8e+02 Score=24.16 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=37.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhc-CC-hH------HHHHHHHHhhhhhh---HHHHHHhhhhc
Q 029156 23 QEVSLSAFAFLFSELVQYNQTQV-DN-IA------ELERRLEDAGYAVG---ARVLELLCHRD 74 (198)
Q Consensus 23 ~~Vs~s~f~~L~~EiV~y~~~~~-~~-~~------e~~~~Le~mGy~VG---~rLiE~l~~r~ 74 (198)
++-.+.-.-++|..++.-..+-. +| .. ..-..||.+||+|+ .||-+++..++
T Consensus 41 REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~ 103 (190)
T PF05266_consen 41 REGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD 103 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 46677777888888887655543 22 22 33478999999999 48888888764
No 22
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.20 E-value=41 Score=24.61 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHhhhhhhH
Q 029156 46 DNIAELERRLEDAGYAVGA 64 (198)
Q Consensus 46 ~~~~e~~~~Le~mGy~VG~ 64 (198)
++.+|+++.|++||..|-.
T Consensus 60 ~s~eev~~ele~mga~in~ 78 (88)
T COG4009 60 ESEEEVERELEDMGAEINR 78 (88)
T ss_pred CCHHHHHHHHHHhCchhcc
Confidence 4568999999999988753
No 23
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=24.32 E-value=34 Score=28.17 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.1
Q ss_pred HHhhhhhhHHHHHHhhhhc
Q 029156 56 EDAGYAVGARVLELLCHRD 74 (198)
Q Consensus 56 e~mGy~VG~rLiE~l~~r~ 74 (198)
..+||.+|.+|++.++.+.
T Consensus 160 ~~~GY~~GY~iVk~yl~~~ 178 (195)
T PF10026_consen 160 RWLGYALGYRIVKAYLEKH 178 (195)
T ss_pred ccchHHHHHHHHHHHHHHC
Confidence 3489999999999999654
No 24
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=22.87 E-value=88 Score=19.94 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHhhhhhhHHHHHHhhh
Q 029156 47 NIAELERRLEDAGYAVGARVLELLCH 72 (198)
Q Consensus 47 ~~~e~~~~Le~mGy~VG~rLiE~l~~ 72 (198)
+..+.-++|.+.|+.++.++++.++-
T Consensus 20 ~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred hHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45567788999999999999998873
No 25
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=22.51 E-value=2e+02 Score=19.61 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhc----CChHHHHHHHHHh
Q 029156 29 AFAFLFSELVQYNQTQV----DNIAELERRLEDA 58 (198)
Q Consensus 29 ~f~~L~~EiV~y~~~~~----~~~~e~~~~Le~m 58 (198)
+|-+.|+-+++.+...+ .+..++|++|+++
T Consensus 18 l~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrI 51 (58)
T PF13314_consen 18 LFGASFTLFIRRILINSNAKKQDVDSMEQKLDRI 51 (58)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 34445555666555543 3456899999864
No 26
>PF08183 SpoV: Stage V sporulation protein family; InterPro: IPR012609 This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localisation [].
Probab=21.56 E-value=60 Score=18.63 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.2
Q ss_pred hhhHHHHHHHhhhCC
Q 029156 142 AFVAGIVRGVLDSAG 156 (198)
Q Consensus 142 af~~GiIrGaL~~lg 156 (198)
-|+.|+|++.|.++.
T Consensus 10 kf~Gg~v~~~L~sf~ 24 (26)
T PF08183_consen 10 KFLGGVVRALLFSFK 24 (26)
T ss_pred HHHhHHHHHHHHHHh
Confidence 477899999998764
Done!