Query         029156
Match_columns 198
No_of_seqs    116 out of 531
Neff          6.1 
Searched_HMMs 29240
Date          Mon Mar 25 13:32:00 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029156hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2j3w_B ZGC 92866, trafficking  100.0 2.1E-64 7.2E-69  416.8  17.7  185    3-194     2-186 (188)
  2 3cue_B Transport protein parti 100.0 1.2E-56 4.2E-61  387.9  14.8  180   10-194    42-282 (283)
  3 2c0j_B R32611_2; palmitate; HE 100.0 6.2E-54 2.1E-58  346.3  14.2  150   25-184     3-159 (160)
  4 1sz7_A BET3 homolog, trafficki 100.0 1.2E-53 3.9E-58  355.3  15.1  163   21-188    19-182 (200)
  5 2bjn_A TPC6, trafficking prote 100.0 1.4E-52 4.9E-57  338.4  14.7  151   24-184     3-159 (160)
  6 3cue_D Transport protein parti 100.0 2.9E-52   1E-56  345.5  14.6  163   21-188    21-186 (193)
  7 2oso_A Hypothetical protein MJ  96.3  0.0055 1.9E-07   48.5   5.2  133   22-185    25-160 (163)
  8 3tfg_A ALR2278 protein; heme-b  84.6     1.4 4.9E-05   35.0   5.3   45  140-186   141-185 (189)
  9 2kii_A Putative uncharacterize  83.4     9.4 0.00032   29.9   9.6   43  140-184   138-180 (181)
 10 3sj5_A Methyl-accepting chemot  59.8     7.4 0.00025   30.9   3.5   46  139-185   136-181 (188)
 11 2vqg_A Uncharacterized protein  48.7       9 0.00031   27.7   2.1   20  139-158    16-35  (99)
 12 1gak_A SP18, fertilization pro  30.4      71  0.0024   24.2   4.5   47   23-72      4-50  (141)
 13 2ve8_A FTSK, DNA translocase F  29.2      69  0.0024   21.8   4.0   43   31-73      9-51  (73)
 14 2bnk_A Early protein GP16.7; D  26.9 1.2E+02  0.0042   19.9   4.7   43   50-97     11-55  (67)
 15 1jg5_A GTP cyclohydrolase I fe  25.5      30   0.001   24.2   1.6   15   48-62     52-66  (83)
 16 3njc_A YSLB protein; NESG, PSI  23.5 1.5E+02  0.0052   23.0   5.5  103   57-183    50-153 (158)
 17 1ty4_C Egg laying defective EG  22.6      24 0.00082   22.8   0.6   16   55-70     17-32  (57)
 18 2q0o_C Probable transcriptiona  20.4      94  0.0032   22.7   3.5   40   21-60     58-97  (107)

No 1  
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00  E-value=2.1e-64  Score=416.79  Aligned_cols=185  Identities=46%  Similarity=0.775  Sum_probs=159.9

Q ss_pred             ccCCCCCCCccccccCccCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccc
Q 029156            3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR   82 (198)
Q Consensus         3 ~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~   82 (198)
                      +++.+++..+|+||||+|++++||+|+|+|||+|||+|++++.++.+|++++|++|||+||.||+|++++|++..+||++
T Consensus         2 ~~~~~~~~~~i~~~~l~~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d   81 (188)
T 2j3w_B            2 EVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETK   81 (188)
T ss_dssp             -------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCS
T ss_pred             CcccCCCCCccccCccccchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCC
Confidence            56778888999999999999999999999999999999999999999999999999999999999999999876699999


Q ss_pred             hHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEE
Q 029156           83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVT  162 (198)
Q Consensus        83 ~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vt  162 (198)
                      ++|+++||||++|+++||||+|+|++.|||+|+|+|+|++|++++|||+|+++++++|++|+||||||||+++||+|+||
T Consensus        82 ~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vt  161 (188)
T 2j3w_B           82 VLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVT  161 (188)
T ss_dssp             HHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEE
Confidence            99999999999999999999999975599999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCceEEEEEechHHHhhhhhhh
Q 029156          163 AHFVPVEGQQRPRTTILIKFAEEVLTSFSLIV  194 (198)
Q Consensus       163 a~~~~~~~~~~p~~~f~Ik~~~~v~~re~~~~  194 (198)
                      ||+       +|+|+|+|||+++|++||+++.
T Consensus       162 a~~-------~~~t~f~Ikf~~~v~~re~~~~  186 (188)
T 2j3w_B          162 VHW-------HKGTTLMIKFDESVIARDKALD  186 (188)
T ss_dssp             EEE-------SSSEEEEEEECHHHHHHHHHTC
T ss_pred             EEe-------CCCEEEEEEecHHHHHHHHhhc
Confidence            999       3699999999999999999873


No 2  
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00  E-value=1.2e-56  Score=387.93  Aligned_cols=180  Identities=39%  Similarity=0.647  Sum_probs=151.2

Q ss_pred             CCccccccCccCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcC--------------
Q 029156           10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK--------------   75 (198)
Q Consensus        10 ~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k--------------   75 (198)
                      +.+||||+|.+.+.+||+|+|+|||+|||+|+++++++.+|++++|+.|||+||.||+|++.+|++              
T Consensus        42 ~~~i~~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~  121 (283)
T 3cue_B           42 PSRIYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS  121 (283)
T ss_dssp             -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred             CCcccccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence            579999999999999999999999999999999999999999999999999999999999999864              


Q ss_pred             -----------------------------------------------CCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 029156           76 -----------------------------------------------GNRRETRLLGILSFVHSTVWKVLFGKVADSLEK  108 (198)
Q Consensus        76 -----------------------------------------------~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~  108 (198)
                                                                     +++||.+++|+++||||++|+++||||+|+||+
T Consensus       122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek  201 (283)
T 3cue_B          122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK  201 (283)
T ss_dssp             -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence                                                           258999999999999999999999999999985


Q ss_pred             ccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHHHh
Q 029156          109 GTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLT  188 (198)
Q Consensus       109 ~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v~~  188 (198)
                      .+++.|+|+|+|+++++.+|++++    +++|++|+||||||||+++||+|+||||+.+... ..++|+|+|||+++|++
T Consensus       202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~-~~~~T~~~IkF~~~v~~  276 (283)
T 3cue_B          202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQVLD  276 (283)
T ss_dssp             CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSS-CTTCEEEECCCCHHHHH
T ss_pred             ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEccccc-CCCceEEEEEecHHHHh
Confidence            555669999999999999999973    5899999999999999999999999999876432 34699999999999999


Q ss_pred             hhhhhh
Q 029156          189 SFSLIV  194 (198)
Q Consensus       189 re~~~~  194 (198)
                      ||++++
T Consensus       277 Re~~r~  282 (283)
T 3cue_B          277 REGLRF  282 (283)
T ss_dssp             HHHHCC
T ss_pred             hhhhhc
Confidence            999876


No 3  
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00  E-value=6.2e-54  Score=346.32  Aligned_cols=150  Identities=25%  Similarity=0.329  Sum_probs=133.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156           25 VSLSAFAFLFSELVQYNQTQVDN-----IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (198)
Q Consensus        25 Vs~s~f~~L~~EiV~y~~~~~~~-----~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF   99 (198)
                      ||+|+|+|||+|||+|++++.++     .++++++|++|||+||.||+|+++ |  +.+||++++|+++||||++|+++|
T Consensus         3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r--~~~r~~d~ld~l~fI~k~~Wk~~f   79 (160)
T 2c0j_B            3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R--ETLAFREELDVLKFLCKDLWVAVF   79 (160)
T ss_dssp             CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G--GGGTTCCHHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence            79999999999999999998774     457799999999999999999999 5  579999999999999999999999


Q ss_pred             cccccccccccCCCCeEEEEeCCcccccccccCCCCC--CccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029156          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (198)
Q Consensus       100 gk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~--~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~  177 (198)
                      |||+|+|  +|||+|+|+|+|++|+|++|+|+|+++.  .++|++|+||||||||+++||+|+||||++     +.|+|+
T Consensus        80 gk~~d~L--~t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~-----~~p~~~  152 (160)
T 2c0j_B           80 QKQMDSL--RTNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVA-----ALPVCK  152 (160)
T ss_dssp             SSCCSEE--EECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEES-----STTCEE
T ss_pred             CCcCccc--eeCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeec-----CCCceE
Confidence            9999999  6999999999999999999999999988  789999999999999999999999999997     578999


Q ss_pred             EEEEech
Q 029156          178 ILIKFAE  184 (198)
Q Consensus       178 f~Ik~~~  184 (198)
                      |+|||.+
T Consensus       153 f~i~~~~  159 (160)
T 2c0j_B          153 FQVVIPK  159 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEEeec
Confidence            9999976


No 4  
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00  E-value=1.2e-53  Score=355.28  Aligned_cols=163  Identities=20%  Similarity=0.373  Sum_probs=151.4

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhc
Q 029156           21 GKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFG  100 (198)
Q Consensus        21 ~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFg  100 (198)
                      ...+||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|+ ..+||++++|+++||||++||++||
T Consensus        19 ~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~d~le~l~fI~k~~Wk~lFg   97 (200)
T 1sz7_A           19 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLG   97 (200)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCSCCCHHHHHHHHHHTHHHHHHS
T ss_pred             ccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhC
Confidence            458999999999999999999999999999999999999999999999999997 5799999999999999999999999


Q ss_pred             ccccccccccCCCCeEEE-EeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEE
Q 029156          101 KVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTIL  179 (198)
Q Consensus       101 k~~D~Le~~tn~~~~Y~l-~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~  179 (198)
                      ||+|+|+ +||++|+|+| .|++|+.. |+++|++++.++|++|+||||||||+++||+  ||||+++++++++++|+|+
T Consensus        98 k~ad~L~-~t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vta~~~~d~l~g~~~t~~~  173 (200)
T 1sz7_A           98 ITPSITN-WSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIR  173 (200)
T ss_dssp             CCCEEEC-CCTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EEEEEEECGGGTCSSEEEE
T ss_pred             CCCccce-ecCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EEEEEEecccCCCCCEEEE
Confidence            9999995 5999999999 79988755 9999999999999999999999999999999  8899999999888999999


Q ss_pred             EEechHHHh
Q 029156          180 IKFAEEVLT  188 (198)
Q Consensus       180 Ik~~~~v~~  188 (198)
                      |||.++|.+
T Consensus       174 Ikf~~~v~~  182 (200)
T 1sz7_A          174 MRFIRRIED  182 (200)
T ss_dssp             EEEEEEC--
T ss_pred             EEEhhhhhh
Confidence            999998865


No 5  
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00  E-value=1.4e-52  Score=338.35  Aligned_cols=151  Identities=23%  Similarity=0.389  Sum_probs=128.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcCChH----HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156           24 EVSLSAFAFLFSELVQYNQTQVDNIA----ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (198)
Q Consensus        24 ~Vs~s~f~~L~~EiV~y~~~~~~~~~----e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF   99 (198)
                      -||.++|+|||+|||+|++++.++.+    +++++|++|||+||.||+|+++ |  +.+||++++|+++||||++|+++|
T Consensus         3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r--~~~r~~~~ld~lkfI~k~~Wk~~f   79 (160)
T 2bjn_A            3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-K--DTARFKDELDIMKFICKDFWTTVF   79 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999987654    6899999999999999999999 5  479999999999999999999999


Q ss_pred             cccccccccccCCCCeEEEEeCCcccccccccCCCCC--CccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029156          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (198)
Q Consensus       100 gk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~--~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~  177 (198)
                      |||+|+|  +|||+|+|+|+|++|+|++|+|+|+++.  .++|++|+||||||||+++||+|+||||+.     +.|+|+
T Consensus        80 gk~~d~L--~t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~-----~~p~~~  152 (160)
T 2bjn_A           80 KKQIDNL--RTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVS-----SMPACK  152 (160)
T ss_dssp             SSCCSEE--EEEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEES-----STTCEE
T ss_pred             CCCCccc--ccCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEec-----CCCceE
Confidence            9999999  6999999999999999999999999884  689999999999999999999999999996     578999


Q ss_pred             EEEEech
Q 029156          178 ILIKFAE  184 (198)
Q Consensus       178 f~Ik~~~  184 (198)
                      |+|++.+
T Consensus       153 F~i~~~~  159 (160)
T 2bjn_A          153 FQVMIQK  159 (160)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9999976


No 6  
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00  E-value=2.9e-52  Score=345.48  Aligned_cols=163  Identities=16%  Similarity=0.327  Sum_probs=150.6

Q ss_pred             CccchhHHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156           21 GKQEVSLSAFAFLFSELVQ-YNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (198)
Q Consensus        21 ~~~~Vs~s~f~~L~~EiV~-y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF   99 (198)
                      ...+||+|+|+|||+|||+ |+++..++.++++++|++|||+||.||+|++++|+ +.+||.+++|+++||||++||++|
T Consensus        21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~~~le~l~fI~k~~Wk~lf   99 (193)
T 3cue_D           21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLART-ALPRCENLVKTSEVLSKCAFKIFL   99 (193)
T ss_dssp             SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred             chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999 55555566899999999999999999999999997 589999999999999999999999


Q ss_pred             cccccccccccCCCCeEEE-EeCCcccccccccCCCC-CCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029156          100 GKVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDM-GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (198)
Q Consensus       100 gk~~D~Le~~tn~~~~Y~l-~D~~~~~~~~vs~p~~~-~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~  177 (198)
                      |||+|+|+ +|||+|+|+| .|++|+.. |+++|+++ ..++|++|+||||||||+++||  .||||+++|+++++++|+
T Consensus       100 gk~~d~L~-~t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~Vta~~~~d~l~g~~~t~  175 (193)
T 3cue_D          100 NITPNITN-WSHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DCDVWFVSDILRGDSQTE  175 (193)
T ss_dssp             SCCCCCBC-CCTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CCEEEECCCSSSSSSCBC
T ss_pred             CCCCccce-ecCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EEEEEEeeccCCCCCCEE
Confidence            99999996 5999999999 89998755 99999998 7899999999999999999999  788889999999899999


Q ss_pred             EEEEechHHHh
Q 029156          178 ILIKFAEEVLT  188 (198)
Q Consensus       178 f~Ik~~~~v~~  188 (198)
                      |+|||.++|.+
T Consensus       176 ~~Ikf~~~v~d  186 (193)
T 3cue_D          176 IKVKLNRILKD  186 (193)
T ss_dssp             EEEECCCCCSC
T ss_pred             EEEEEhhhhhc
Confidence            99999998865


No 7  
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=96.25  E-value=0.0055  Score=48.52  Aligned_cols=133  Identities=17%  Similarity=0.196  Sum_probs=78.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH-hhc
Q 029156           22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV-LFG  100 (198)
Q Consensus        22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~-lFg  100 (198)
                      ...|+.+.|.+|+..+-..+.....+..     |.+.||..|..+.+.+             ++.+    +++|+. =+|
T Consensus        25 ~~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~-------------~~~l----~~~~~~~G~G   82 (163)
T 2oso_A           25 SKKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKN-------------IEEL----KKIFKLMNFG   82 (163)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSS-------------HHHH----HHHHHHHTCC
T ss_pred             cCcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHH-------------HHHH----HHHHHHcCce
Confidence            4789999999999987766544332222     9999999999886542             2222    466765 222


Q ss_pred             c-cccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhC-CCCeEEEEEEccCCCCCCCceEE
Q 029156          101 K-VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVEGQQRPRTTI  178 (198)
Q Consensus       101 k-~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~l-g~~~~Vta~~~~~~~~~~p~~~f  178 (198)
                      . .++..+ ....++.+.|.-.+...-.   .   ..+-.-+.|.+|++.|+++.+ |=+..  +.=+.....+++.|.|
T Consensus        83 ~l~i~~~~-~~~~~~~~~i~v~~s~e~~---~---~~~~pvC~~~~G~~aG~~s~~~g~~~~--~~E~~C~a~G~~~C~F  153 (163)
T 2oso_A           83 DLEIDENK-ILLKNPPYKIKLSNPPYQW---V---SKEEPIHDFIAGILAGCLEEIFYYYFV--VNEVECVSQGKDKCVF  153 (163)
T ss_dssp             EEECCHHH-HHHSCSCEEEEEESCSCTT---C---CCSSCCCHHHHHHHHHHHHHHHCSEEE--EEEEECGGGTCSSEEE
T ss_pred             EEEEEecc-ccccCCcEEEEEEeCceee---c---CCCCceeHHHHHHHHHHHHHHhCCCeE--EEEeEeEcCCCCeEEE
Confidence            2 111110 0013345655433322111   1   123467889999999999886 44433  3344455668899999


Q ss_pred             EEEechH
Q 029156          179 LIKFAEE  185 (198)
Q Consensus       179 ~Ik~~~~  185 (198)
                      .++..+.
T Consensus       154 ~~~~~~~  160 (163)
T 2oso_A          154 EVKEVDE  160 (163)
T ss_dssp             EEEEEC-
T ss_pred             EEEEHHH
Confidence            9998653


No 8  
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=84.60  E-value=1.4  Score=35.02  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             chhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHH
Q 029156          140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV  186 (198)
Q Consensus       140 y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v  186 (198)
                      ++.+..|+|+|+-+-.|-+.+|+  ..+....+.+.|.|.|++.++-
T Consensus       141 l~~~~~Gli~~~A~~f~~~v~i~--~~~~~~~~~~h~~f~i~~~~~~  185 (189)
T 3tfg_A          141 LAPMVLGLLHGLGKRFQTKVEVT--QTAFRETGEDHDIFSIKYEDSN  185 (189)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEE--EEECTTTTSSSEEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEE--EEeccCCCCCeEEEEEEECCCC
Confidence            67899999999999866555555  5554444566899999998753


No 9  
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=83.45  E-value=9.4  Score=29.92  Aligned_cols=43  Identities=7%  Similarity=0.084  Sum_probs=33.4

Q ss_pred             chhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029156          140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE  184 (198)
Q Consensus       140 y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~  184 (198)
                      ...|..|+|+|+-+.+|-+.+|+-.  +...++...+.|.|+++.
T Consensus       138 l~~~~~Gli~~~A~~f~~~v~i~~~--~~~~~~~~h~~f~i~~~~  180 (181)
T 2kii_A          138 LCFCAEGLLFGAAQHFQQKIQISHD--TCMHTGADHCMLIIELQN  180 (181)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEEE--ECGGGTCSSEEEEEEECC
T ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEE--eeccCCCCEEEEEEEecC
Confidence            7789999999999999988888732  222234569999999864


No 10 
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=59.82  E-value=7.4  Score=30.87  Aligned_cols=46  Identities=15%  Similarity=0.090  Sum_probs=33.8

Q ss_pred             cchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechH
Q 029156          139 NCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE  185 (198)
Q Consensus       139 ~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~  185 (198)
                      .++.++.|+|+||-+-.|-+.+|+-.-..+... ....+|.|+|+..
T Consensus       136 gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~-~~~~~~rl~f~~~  181 (188)
T 3sj5_A          136 KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDG-FSRLKVRIKFKNP  181 (188)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETT-EEEEEEEEEESSC
T ss_pred             CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCC-ceEEEEEEEeeCh
Confidence            467899999999999999999987333222211 2277899999875


No 11 
>2vqg_A Uncharacterized protein CGL0972; transmembrane, membrane protein, porin, membrane, transport, transport; HET: GVT; 1.82A {Corynebacterium glutamicum} PDB: 2vqh_A 2vqk_A 2vql_A
Probab=48.73  E-value=9  Score=27.74  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=17.4

Q ss_pred             cchhhhHHHHHHHhhhCCCC
Q 029156          139 NCGAFVAGIVRGVLDSAGFP  158 (198)
Q Consensus       139 ~y~af~~GiIrGaL~~lg~~  158 (198)
                      +|.+.-||++||+|...|+.
T Consensus        16 ~~dwv~Cgiv~t~L~~~gl~   35 (99)
T 2vqg_A           16 QYNWVACGILEGGLKAAGVL   35 (99)
T ss_dssp             GGSHHHHHHHHHHHHHTTCC
T ss_pred             ccCcccccHHHHHHHHhhcC
Confidence            47778899999999999875


No 12 
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=30.37  E-value=71  Score=24.24  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=33.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 029156           23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCH   72 (198)
Q Consensus        23 ~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~   72 (198)
                      .-||.+-=+.+-..|+.|+-.+.   ..+.++.++|||++|.--.-.+.+
T Consensus         4 ~~Vsken~aamki~m~~fLD~~~---~kfkkr~~~m~~~l~p~~~~~l~y   50 (141)
T 1gak_A            4 VVVSRQEQSYVQRGMVNFLDEEM---HKLVKRFRDMRWNLGPGFVFLLKK   50 (141)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             ceeehhhHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCCchHHHHHHH
Confidence            44666666777778888875543   257899999999997765544443


No 13 
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=29.24  E-value=69  Score=21.80  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhh
Q 029156           31 AFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR   73 (198)
Q Consensus        31 ~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r   73 (198)
                      +-||-+.|++..+...-....-++=-++||+=..||+|.+-..
T Consensus         9 D~Ly~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~   51 (73)
T 2ve8_A            9 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMA   51 (73)
T ss_dssp             CTTHHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHC
Confidence            3467788888777654434455566689999999999998753


No 14 
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=26.87  E-value=1.2e+02  Score=19.88  Aligned_cols=43  Identities=21%  Similarity=0.409  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHH--HHHHHHH
Q 029156           50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFV--HSTVWKV   97 (198)
Q Consensus        50 e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI--~k~~Wk~   97 (198)
                      ++-..-++-|-+|-.-++|.+.     ..+.....++|.+|  ++.+||.
T Consensus        11 ~vLDlYe~SnIrIP~DIIEdl~-----~~~L~te~EVmnYiEnqR~~WKL   55 (67)
T 2bnk_A           11 AVLDLYEQSNIRIPSDIIEDLV-----NQRLQSEQEVLNYIETQRTYWKL   55 (67)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHH-----TTCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcCcHHHHHHHH-----HHhhhhHHHHHHHHHhhHhHHhh
Confidence            4455667789999999999999     34667778899998  4678985


No 15 
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=25.54  E-value=30  Score=24.18  Aligned_cols=15  Identities=27%  Similarity=0.308  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHhhhhh
Q 029156           48 IAELERRLEDAGYAV   62 (198)
Q Consensus        48 ~~e~~~~Le~mGy~V   62 (198)
                      ..-+-++||.+||+|
T Consensus        52 Pr~VLnKLE~~G~rV   66 (83)
T 1jg5_A           52 PRIVLDKLECRGFRV   66 (83)
T ss_dssp             HHHHHHHHHHTTCEE
T ss_pred             hHHHHHHHhccCeEE
Confidence            456889999999986


No 16 
>3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium, unknown function; 1.69A {Bacillus subtilis subsp}
Probab=23.46  E-value=1.5e+02  Score=23.02  Aligned_cols=103  Identities=12%  Similarity=0.182  Sum_probs=60.9

Q ss_pred             HhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCC
Q 029156           57 DAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG  136 (198)
Q Consensus        57 ~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~  136 (198)
                      .+=|..|.+|+..+-        ..+.-|++.|-.+--|=.+     ..+ +....+-.|-|  +.|++..++...    
T Consensus        50 ~ILYWAGK~LARk~p--------l~s~edli~FF~~agwG~L-----~i~-kek~~~~~~eL--sG~~v~~Rl~~~----  109 (158)
T 3njc_A           50 SMMYWAGKHLARKFP--------LESWEEFPAFFEEAGWGTL-----TNV-SAKKQELEFEL--EGPIISNRLKHQ----  109 (158)
T ss_dssp             HHHHHHHHHHHHHSC--------CSSGGGHHHHHHHTTSCEE-----EEE-EEETTEEEEEE--ECHHHHHHHHHS----
T ss_pred             ceeeeccHHHHHhCC--------CCCHHHHHHHHHHhCCcEE-----EEe-ecccceEEEEe--cCchHHhHhhcC----
Confidence            356888888886644        3456678888776666443     223 12222233444  333434333221    


Q ss_pred             CccchhhhHHHHHHHhhh-CCCCeEEEEEEccCCCCCCCceEEEEEec
Q 029156          137 TFNCGAFVAGIVRGVLDS-AGFPAVVTAHFVPVEGQQRPRTTILIKFA  183 (198)
Q Consensus       137 ~l~y~af~~GiIrGaL~~-lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~  183 (198)
                      +-.+.++=||.|.+.++. .|..|+...+..+    ....+.|.|+++
T Consensus       110 ~~~~F~LEAGFIAe~iq~q~~~~aEa~~~~~~----k~~~V~i~V~~D  153 (158)
T 3njc_A          110 KEPCFQLEAGFIAEQIQLMNDQIAESYEQVKK----RADKVVLTVKWD  153 (158)
T ss_dssp             SSCCCHHHHHHHHHHHHHHCTTEEEEEEEEEE----CSSCEEEEEEEE
T ss_pred             CCCcEEEehHHHHHHHHHHhCcceEEEEeecc----cCCeEEEEEEec
Confidence            224566888999988876 5777776554332    234899999887


No 17 
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=22.63  E-value=24  Score=22.80  Aligned_cols=16  Identities=19%  Similarity=0.677  Sum_probs=12.4

Q ss_pred             HHHhhhhhhHHHHHHh
Q 029156           55 LEDAGYAVGARVLELL   70 (198)
Q Consensus        55 Le~mGy~VG~rLiE~l   70 (198)
                      +.++||.||.+|.-.+
T Consensus        17 i~si~~~IG~KL~~MC   32 (57)
T 1ty4_C           17 ISSIGYEIGSKLAAMC   32 (57)
T ss_dssp             -CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7789999999997543


No 18 
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.41  E-value=94  Score=22.70  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=28.8

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhh
Q 029156           21 GKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY   60 (198)
Q Consensus        21 ~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy   60 (198)
                      ..+.++.+...-++.|.|.-..+....-.+++.-++.+||
T Consensus        58 ~d~~~~~avl~~~q~eYi~a~~e~~AQq~~lstLid~LGy   97 (107)
T 2q0o_C           58 DDPSISGPVLQTLQDEYVARQKRSEAQQEELSDILDALGF   97 (107)
T ss_dssp             TCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4466788888888888887655555445577888888887


Done!