BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029158
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 9/194 (4%)
Query: 4 LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 63
+E A+ +P P E+AF GRSNVGKSS+LNAL + + S PG T++INF+
Sbjct: 6 VELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFY 64
Query: 64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 123
+ +K VDLPGYG+A ++ + W+ LV++Y R SL+ V LL+D + + P+D +
Sbjct: 65 LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGR--IPPQDSD 122
Query: 124 L--ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-PVMMVSSKSGA 180
L + M+ + +VLTK D V ++ RA ++EE K + + ++ SS +G
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKV---KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179
Query: 181 GIRSLRTVLSKIAR 194
GI L ++S + +
Sbjct: 180 GISELLDLISTLLK 193
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 5 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 64
F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG TQ IN F+
Sbjct: 10 HFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE 69
Query: 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 124
+ LVDLPGYG+A EE+K W+ + EY+ R SL+ + +L+D + +K D ++
Sbjct: 70 VADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM 129
Query: 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAM--QIEESLKANNSLVQPVMMVSSKSGAGI 182
I S V+LTK D + AR+A + E++ A N VQ V SS G+
Sbjct: 130 IEWAVDSNIAVLVLLTKADKL--ASGARKAQLNMVREAVLAFNGDVQ-VETFSSLKKQGV 186
Query: 183 RSLRTVLS 190
LR L
Sbjct: 187 DKLRQKLD 194
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%)
Query: 1 MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 60
+ K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+
Sbjct: 3 VTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL 62
Query: 61 NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 120
NF+ + +L VD+PGYGFA + ++AW +++ Y++TR LK V ++D +
Sbjct: 63 NFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSND 122
Query: 121 DHELISLMERSQTKYQVVLTKTDTV 145
D ++ ++ V+ TK D +
Sbjct: 123 DVQMYEFLKYYGIPVIVIATKADKI 147
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 1 MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 60
+++ FF P PEIAFAGRSN GKS+ +N L Q + S PG TQ I
Sbjct: 9 LHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI 68
Query: 61 NFFKLGTK----LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 116
N+F +G LVDLPGYG+A K WE+L+ Y+ TR L + L++D +
Sbjct: 69 NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP 128
Query: 117 VKPRDHELISLMERSQTKYQVVLTKTD 143
+ D +I + +LTK D
Sbjct: 129 LTELDRRMIEWFAPTGKPIHSLLTKCD 155
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 23 EIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
++A AG NVGK+S+ NALT W V K G+ F G + L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPG 61
Query: 77 -YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY 135
Y Y+ + K A + L+K V L+ D+ V P + L L+E + +
Sbjct: 62 TYSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEK 111
Query: 136 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195
+V+L T ID A++ + + L PV+ SS +G G+ L+ KI +
Sbjct: 112 KVILAMT----AIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEY 164
Query: 196 AK 197
A+
Sbjct: 165 AQ 166
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 24 IAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG- 76
+A AG NVGK+S+ NALT W V K G+ F G + L+DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPGT 62
Query: 77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 136
Y Y+ + K A + L+K V L+ D+ V P + L L+E + + +
Sbjct: 63 YSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEKK 112
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196
V+L T ID A++ + + L PV+ SS +G G+ L+ KI +A
Sbjct: 113 VILAMT----AIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEYA 165
Query: 197 K 197
+
Sbjct: 166 Q 166
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 17 PAPDLPEIAFA--GRSNVGKSSMLNALTR-----QWGVVRTSDKPGLTQTINF--FKL-G 66
P D I G + GK+++ LT + S K G+T I F FKL
Sbjct: 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN 72
Query: 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 126
++ LVD PG+ +L++ VS + +++D K G K + E +
Sbjct: 73 YRITLVDAPGHA-------------DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML 119
Query: 127 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-PVMMVSSKSGAGIRSL 185
+++ VV+TK+D ++ R M ++ L++ ++L ++ +S+K+G G+ L
Sbjct: 120 ILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL 179
Query: 186 RTVL 189
+ ++
Sbjct: 180 KNLI 183
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 24 IAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG- 76
+A AG NVGK+S+ NALT W V K G+ F G + L+DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPGT 62
Query: 77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 136
Y Y+ + K A + L+K V L+ D+ V P + L K +
Sbjct: 63 YSLGYSSIDEKIARDYLLKG------DADLVILVADS---VNPEQSLYLLLEILEXEK-K 112
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196
V+L T ID A++ + + L PV+ SS +G G+ L+ KI +A
Sbjct: 113 VILAXT----AIDEAKKTGXKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEYA 165
Query: 197 K 197
+
Sbjct: 166 Q 166
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 28 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
G NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG
Sbjct: 127 GIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA- 82
I FAGRSNVGKS+++ LT + VR +PG+T+ I + ++D PG+GF
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNH-KIIDXPGFGFXXGL 60
Query: 83 ----KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK--------W---GVKPRDHELISL 127
+E +KD E+V ++ L++D K W G P D E
Sbjct: 61 PKEVQERIKD---EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 128 MERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
+ V + K D + + + A + E L + + P +S+K G I L
Sbjct: 118 LRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIP---ISAKFGDNIERL 174
Query: 186 RTVLSKIAR 194
+ + ++ R
Sbjct: 175 KNRIFEVIR 183
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 78
I AGR NVGKSS +NAL Q V SD G T +++ +G + LVD PG
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGP-VTLVDTPGL- 93
Query: 79 FAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 136
D EL + V + RV + C ++ T P + ++++L + + +
Sbjct: 94 ---------DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFV 144
Query: 137 VVLTKTDTV 145
VV+ K D +
Sbjct: 145 VVVNKIDVL 153
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGY 77
+ ++ GR NVGKSS+ N L ++ V +D PG+T+ + + T + LVD G
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGGL 59
Query: 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL-IDTKWGVKPRDHELISLMERSQTKYQ 136
D WE+ ++E V + V L +D + + D+E+ + R
Sbjct: 60 WSG-------DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI 112
Query: 137 VVLTKTD 143
+V TK D
Sbjct: 113 LVATKVD 119
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 76
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 9 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 76
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 6 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 60
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 76
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 76
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFA 80
+ G+ NVGKS++LN L + + T D PG T+ + G +VD G
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVIRGILFRIVDTAG---- 300
Query: 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLI-DTKWGVKPRDHELISLMERSQTK-YQVV 138
+ E D E L E + + L + D P D E ++ER + K Y VV
Sbjct: 301 -VRSETNDLVERLGIERTLQEIEKADIVLFVLDAS---SPLDEEDRKILERIKNKRYLVV 356
Query: 139 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
+ K D V I+ EE +K + ++ +S+ G G+ L
Sbjct: 357 INKVDVVEKIN--------EEEIKNKLGTDRHMVKISALKGEGLEKL 395
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 9 AAKVSSSFPAPDLPE-------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
AA++S D E +A GR NVGKSS+LNA ++ + T D PG T+ +
Sbjct: 205 AAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVV 263
Query: 62 FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL-IDTKWGV 117
+L G + ++D G E D E++ E + + LL ID G
Sbjct: 264 ESQLVVGGIPVQVLDTAGI------RETSDQVEKIGVERSRQAANTADLVLLTIDAATGW 317
Query: 118 KPRDHELISLMERSQTKYQ---VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174
D E+ Q K++ +V+ K D V Q+ SL+ ++ Q V
Sbjct: 318 TTGDQEIY-----EQVKHRPLILVMNKIDLV--------EKQLITSLEYPENITQIVHTA 364
Query: 175 SSKSGAGIRSLRTVLSKIARFAKV 198
+++ GI SL T + +I + KV
Sbjct: 365 AAQK-QGIDSLETAILEIVQTGKV 387
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTKLCLVDLPGYGF 79
+A G+ NVGKS++LN L V S K G T+ + ++ +D PG
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVV 138
+ + + E+ K+ + + +ID G +PRD E+ + ++ VV
Sbjct: 71 PKKSDVLGHSMVEIAKQSLE---EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 139 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-RTVL 189
+ K D + P A+ + + + + + + ++ +S+ GA + L +T+L
Sbjct: 128 INKIDKIGP---AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTIL 176
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTKLCLVDLPGYGF 79
+A G+ NVGKS++LN L V S K G T+ + ++ +D PG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVV 138
+ + + E+ K+ + + +ID G +PRD E+ + ++ VV
Sbjct: 72 PKKSDVLGHSMVEIAKQSLE---EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 139 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL-RTVL 189
+ K D + P A+ + + + + + + ++ +S+ GA + L +T+L
Sbjct: 129 INKIDKIGP---AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTIL 177
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 24 IAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGF 79
+ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64
Query: 80 AYAKEE---VKDAWEELVKEYVSTRVSLKRVCLLID--TKWGVKPRDHELISLMERSQTK 134
A + E ++ AW+E+ + RV ++D T V P +
Sbjct: 65 ASDEVERIGIERAWQEIEQ--------ADRVLFMVDGTTTDAVDPAE------------I 104
Query: 135 YQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
+ + + PI V R I E+L + ++ +S+++G G+ LR L +
Sbjct: 105 WPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 164
Query: 194 RF 195
F
Sbjct: 165 GF 166
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 32/178 (17%)
Query: 24 IAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGF 79
+ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 67
Query: 80 AYAKEE---VKDAWEELVKEYVSTRVSLKRVCLLID--TKWGVKPRDHELISLMERSQTK 134
A + E ++ AW+E+ + RV ++D T V P +
Sbjct: 68 ASDEVERIGIERAWQEIEQA--------DRVLFMVDGTTTDAVDPAE------------I 107
Query: 135 YQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191
+ + + PI V R I E+L + ++ +S+++G G+ LR L +
Sbjct: 108 WPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 165
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 32/182 (17%)
Query: 24 IAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGF 79
+ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGXPLHIIDTAGLRE 64
Query: 80 AYAKEE---VKDAWEELVKEYVSTRVSLKRVCLLID--TKWGVKPRDHELISLMERSQTK 134
A + E ++ AW+E+ + RV +D T V P +
Sbjct: 65 ASDEVERIGIERAWQEIEQ--------ADRVLFXVDGTTTDAVDPAE------------I 104
Query: 135 YQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
+ + + PI V R I E+L + ++ +S+++G G+ LR L +
Sbjct: 105 WPEFIARLPAKLPITVVRNKADITGETLGXSEVNGHALIRLSARTGEGVDVLRNHLKQSX 164
Query: 194 RF 195
F
Sbjct: 165 GF 166
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 20 DLPEIAFAGRSNVGKSSMLNA-LTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLP 75
D ++A GR NVGKS++ NA L ++ +V S PG T+ F G K VD
Sbjct: 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV--SPIPGTTRDPVDDEVFIDGRKYVFVDTA 236
Query: 76 GYGFAYAKEEVKDAWEELVKEYVSTRV--SLKR---VCLLIDTKWGVKPRDHELISLMER 130
G K V+ V++Y + RV S+++ V +++D G+ +D L ER
Sbjct: 237 GL---RRKSRVE---PRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXER 290
Query: 131 SQTKYQVVLTKTDTV 145
VV K D V
Sbjct: 291 RGRASVVVFNKWDLV 305
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----TINFFKLGTKLCLVDLPGYG 78
+ GR NVGKS++ N L ++ + D+ G+T+ T+ ++ G LVD G
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWY--GKTFKLVDTCGV- 59
Query: 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 138
F ++ + +E+ + V ++D K G+ D L + +S +V
Sbjct: 60 FDNPQDIISQKXKEVTLNXIR---EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILV 116
Query: 139 LTKTDTV 145
K + +
Sbjct: 117 ANKAENL 123
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 25/157 (15%)
Query: 24 IAFAGRSNVGKSSMLNAL------------TRQWGVVRTSDKPGLTQTINFFKLGTKLCL 71
I G+S +GKS+++N L R+ + +T + + I + KL +
Sbjct: 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTV 64
Query: 72 VDLPGYGFAYAKEEVKDAWEELVKE----YVSTRVSLKRVCLLIDTK-----WGVKPRDH 122
+D PG+G E + E+ + E ++ V++ R + DT+ + + P H
Sbjct: 65 IDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH 124
Query: 123 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 159
L L ++ L+K + P+ M +EE
Sbjct: 125 SLRPL----DLEFMKHLSKVVNIIPVIAKADTMTLEE 157
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 9 AAKVSSSFPAPDL--PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK 64
A +V P DL P + AG NVGKS++L ALT + + P T+ IN F+
Sbjct: 153 AREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEI--ASYPFTTRGINVGQFE 210
Query: 65 LGT-KLCLVDLPG 76
G + ++D PG
Sbjct: 211 DGYFRYQIIDTPG 223
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 39/187 (20%)
Query: 21 LPEIAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 74
L +A G NVGK+++ NALT RQ W V K G+ + + +VDL
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-----KEFLVVDL 57
Query: 75 PG-YGF-AYAKEE------VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 126
PG Y A++ +E + D +++ + V + ++ + L ++
Sbjct: 58 PGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLE-------------- 103
Query: 127 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 186
L E +VL K D + ++ +I+ K L PV+ ++K G G+ L+
Sbjct: 104 LFEMEVKNIILVLNKFDL-----LKKKGAKIDIK-KMRKELGVPVIPTNAKKGEGVEELK 157
Query: 187 TVLSKIA 193
+++ +A
Sbjct: 158 RMIALMA 164
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
Query: 26 FAGRSNVGKSSMLNALTRQWGVVRTSD 52
FAG+S VGKSS+LNA++ + G +RT++
Sbjct: 178 FAGQSGVGKSSLLNAISPELG-LRTNE 203
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 27/178 (15%)
Query: 26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA 82
AG+ N GKS++LN L Q + S PG T+ F T L D G
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAI-VSHMPGTTRDYIEECFIHDKTMFRLTDTAG------ 290
Query: 83 KEEVKDAWEELVKEYV-STRVSLKRVCLLID-TKWGVKPRDHELISLME----RSQTKYQ 136
+++A EE+ E + +R+ + L++ G + D EL + E K+
Sbjct: 291 ---LREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFL 347
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194
V K D D RA+ + V+ +S+ +G GI +L+ + + +
Sbjct: 348 TVANKLDRAANADALIRAIA--------DGTGTEVIGISALNGDGIDTLKQHMGDLVK 397
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKLGTKLCLVDLPG 76
L + G N GKS+++N L + R S +PG+T+ I +F L + ++D PG
Sbjct: 99 LARVLIVGVPNTGKSTIINKLKGK----RASSVGAQPGITKGIQWFSLENGVKILDTPG 153
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYG 78
P +A GR NVGKS++ N + + + D PG+T+ + L L+D G
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 82
Query: 79 ------FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 132
A +++ + A +E + +++ + GV D E+ ++ R++
Sbjct: 83 IGDEPFLAQIRQQAEIAMDE-----------ADVIIFMVNGREGVTAADEEVAKILYRTK 131
Query: 133 TKYQVVLTKTDT 144
+ + K D
Sbjct: 132 KPVVLAVNKLDN 143
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 28 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYAKE 84
GR NVGKSS++NA+ + V+ S+ G T+ +F + +VD G
Sbjct: 202 GRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM------- 253
Query: 85 EVKDAWEELVKEYVSTRV--SLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQVVL 139
K E ++Y R ++ R V +++D + G+ +D + + +V+
Sbjct: 254 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVV 313
Query: 140 TKTDTVFPIDVARRAM-QIEESLKANNSLVQ--PVMMVSSKSGAGIRSLRTVLSK 191
K D V D M + EE+++ + + P++ +S+ + I +L + K
Sbjct: 314 NKWDAV---DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 365
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGT-KLCLVDLPGYGFA 80
IA GR NVGKS++LN L Q + TS K T + + G + VD PG
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM- 65
Query: 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLI--DTKWGVKPRDHELISLMERSQTKYQVV 138
E K A L+ + S+ + + + + T+W P D +++ + + +
Sbjct: 66 ----EEKRAINRLMNKAASSSIGDVELVIFVVEGTRW--TPDDEMVLNKLREGKAPVILA 119
Query: 139 LTKTDTV 145
+ K D V
Sbjct: 120 VNKVDNV 126
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGT-KLCLVDLPGYGFA 80
IA GR NVGKS++LN L Q + TS K T + + G + VD PG
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM- 68
Query: 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLI--DTKWGVKPRDHELISLMERSQTKYQVV 138
E K A L+ + S+ + + + + T+W P D +++ + + +
Sbjct: 69 ----EEKRAINRLMNKAASSSIGDVELVIFVVEGTRW--TPDDEMVLNKLREGKAPVILA 122
Query: 139 LTKTDTV 145
+ K D V
Sbjct: 123 VNKVDNV 129
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S.
Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-Y 77
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG Y
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60
Query: 78 GFA-YAKEE 85
+ Y+ EE
Sbjct: 61 SMSPYSPEE 69
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 26 FAGRSNVGKSSMLNALTRQWGVVRT---SDKPGLTQ 58
FAG+S VGKSS+LNAL + T SD GL Q
Sbjct: 212 FAGQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQ 247
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-Y 77
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG Y
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60
Query: 78 GFAYAKEEVKDAWEELVKE 96
+ E K A + L+ +
Sbjct: 61 SMSPYSPEAKVARDYLLSQ 79
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 35/167 (20%)
Query: 28 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----------FFKLGTK---LCLVDL 74
G S +GKS+++N+L + + + PG + I K G L +VD
Sbjct: 15 GESGLGKSTLINSLF--LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 72
Query: 75 PGYGFAYAK----EEVKDAWEELVKEYVSTRVSLKR---------VCL--LIDTKWGVKP 119
PG+G A + V D + ++Y++ + R CL + + G+KP
Sbjct: 73 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP 132
Query: 120 RDHELISLMERSQTKYQVV--LTKTDTVFPIDVARRAMQIEESLKAN 164
D I M+R K ++ + K DT+ P + + QI + ++ +
Sbjct: 133 LD---IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH 176
>pdb|2JYB|A Chain A, Binary Hvdhfr1:folate Complex
pdb|2ITH|A Chain A, Nmr Structure Of Haloferax Volcanii Dhfr
Length = 162
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 136 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL------RTVL 189
Q+V+++++ F +D A RA +EE++ SL V GA I +L R VL
Sbjct: 61 QIVMSRSERSFSVDTAHRAASVEEAVDIAASLDAETAYV--IGGAAIYALFQPHLDRMVL 118
Query: 190 SKI 192
S++
Sbjct: 119 SRV 121
>pdb|1VDR|A Chain A, Dihydrofolate Reductase
pdb|1VDR|B Chain B, Dihydrofolate Reductase
Length = 162
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 136 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL------RTVL 189
Q+V+++++ F +D A RA +EE++ SL V GA I +L R VL
Sbjct: 61 QIVMSRSERSFSVDTAHRAASVEEAVDIAASLDAETAYV--IGGAAIYALFQPHLDRMVL 118
Query: 190 SKI 192
S++
Sbjct: 119 SRV 121
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 26 FAGRSNVGKSSMLNALTRQWGVVRTSD 52
FAG+S VGKSS+LNAL + T+D
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTND 246
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 35/168 (20%)
Query: 27 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----------FFKLGTK---LCLVD 73
G S +GKS+++N+L + + + PG + I K G L +VD
Sbjct: 9 VGESGLGKSTLINSLF--LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVD 66
Query: 74 LPGYGFAYAK----EEVKDAWEELVKEYVSTRVSLKR---------VCL--LIDTKWGVK 118
PG+G A + V D + ++Y++ + R CL + + G+K
Sbjct: 67 TPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 126
Query: 119 PRDHELISLMERSQTKYQVV--LTKTDTVFPIDVARRAMQIEESLKAN 164
P D I M+R K ++ + K DT+ P + + QI + ++ +
Sbjct: 127 PLD---IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH 171
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s
Mutant Without Nucleotide
Length = 272
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 74
+ EIA G N GK+S+ N +T W V K GL K L + DL
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLV------KKNKDLEIQDL 56
Query: 75 PG-YGFA-YAKEE 85
PG Y + Y+ EE
Sbjct: 57 PGIYSMSPYSPEE 69
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
Length = 272
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG 76
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPG 58
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a
Mutant Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 74
+ EIA G N GK+S+ N +T W V K GL K L + DL
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLV------KKNKDLEIQDL 56
Query: 75 PG-YGFA-YAKEE 85
PG Y + Y+ EE
Sbjct: 57 PGIYSMSPYSPEE 69
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 58
P +A GR NVGKS++ N + + + D PG+T+
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTR 39
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 26 FAGRSNVGKSSMLNAL 41
FAG+S VGKSS+LNAL
Sbjct: 165 FAGQSGVGKSSLLNAL 180
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 23 EIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
++ G +NVGKS+ +N +++ V+ TS PG T + L + L D PG
Sbjct: 162 DVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPG 220
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 25 AFAGRSNVGKSSMLNALT--RQWGVVRTSDK----PGLTQTINFFKLGTKLCLVDLPGYG 78
AG S VGKSS+LNA+ + V S+K T T K +VD PG
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG-- 230
Query: 79 FAYAKEEVKDAWEELVKEY 97
+A E+ D E +K Y
Sbjct: 231 --FANLEINDIEPEELKHY 247
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 124 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 183
+ L E+++ + +V+ K D ++ D R+ ++EE S + P++ S+K+G GI
Sbjct: 107 FLVLAEKNELETVMVINKMD-LYDEDDLRKVRELEEIY----SGLYPIVKTSAKTGMGIE 161
Query: 184 SLRTVL-SKIARFA 196
L+ L KI+ A
Sbjct: 162 ELKEYLKGKISTMA 175
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 15 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV 47
SF P +A GRS GKS++ N TR + V
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 35/160 (21%)
Query: 28 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----------FFKLGTK---LCLVDL 74
G S +GKS+++N+L + + + PG + I K G L +VD
Sbjct: 38 GESGLGKSTLINSLF--LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 95
Query: 75 PGYGFAYAK----EEVKDAWEELVKEYVSTRVSLKR---------VCL--LIDTKWGVKP 119
PG+G A + V D + ++Y++ + R CL + + G+KP
Sbjct: 96 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP 155
Query: 120 RDHELISLMERSQTKYQVV--LTKTDTVFPIDVARRAMQI 157
D I M+R K ++ + K DT+ P + + QI
Sbjct: 156 LD---IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQI 192
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 28 GRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLC-LVDLPGYGFAYAKE 84
G N GK+++ NALT R + PG+T + F LG L + DLPG A
Sbjct: 8 GNPNCGKTTLFNALTN--ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65
Query: 85 EVKDAWEELVKEYVSTRVSLKRVCLL 110
E E++ + V + L+ C++
Sbjct: 66 EGISQDEQIAAQSV---IDLEYDCII 88
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYG 78
+ ++ G N GKSS+L A+TR + L+ + ++ + L D+P G
Sbjct: 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIP--G 214
Query: 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL--MERSQTKYQ 136
E K E ++ TRV L + + D L +L + + Y
Sbjct: 215 IIEGASEGKGLGLEFLRHIARTRVLL----------YVLDAADEPLKTLETLRKEVGAYD 264
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKA-NNSLVQ---PVMMVSSKSGAGIRSLRTVLSKI 192
L + ++ ++ + + EE++KA ++L + V+ VS+ +GAG+ +L+ L +
Sbjct: 265 PALLRRPSLVALN--KVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 322
Query: 193 AR 194
R
Sbjct: 323 VR 324
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 23 EIAFAGRSNVGKSSMLNAL----TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
++ G +NVGKS+ +N + T + V+ TS PG T + L + L D PG
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
++P I G +N GK+S+ N+LT GLTQ ++
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLT------------GLTQKVD 207
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
++P I G +N GK+S+ N+LT GLTQ ++
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLT------------GLTQKVD 207
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
++P I G +N GK+S+ N+LT GLTQ ++
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLT------------GLTQKVD 207
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-Y 77
+ EIA G GK+S+ N +T R + PG+T + K L + DLPG Y
Sbjct: 3 MTEIALIGNPASGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60
Query: 78 GFA-YAKEE 85
+ Y+ EE
Sbjct: 61 SMSPYSPEE 69
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 24 IAFAGRSNVGKSSMLNALTR 43
+ G NVGKS++ NALTR
Sbjct: 4 VGIVGLPNVGKSTLFNALTR 23
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 24 IAFAGRSNVGKSSMLNALTR 43
+ G NVGKS++ NALTR
Sbjct: 4 VGIVGLPNVGKSTLFNALTR 23
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 20 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 61
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 75
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 20 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 61
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 27 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 72
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase
Domain Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 20 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 61
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 70
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 20 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 61
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 75
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 20 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 61
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,067,019
Number of Sequences: 62578
Number of extensions: 186014
Number of successful extensions: 682
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 87
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)