Query 029158
Match_columns 198
No_of_seqs 131 out of 1587
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0218 Predicted GTPase [Gene 100.0 1.6E-34 3.6E-39 201.2 21.3 194 3-196 6-199 (200)
2 TIGR03598 GTPase_YsxC ribosome 100.0 3.1E-31 6.8E-36 188.4 19.8 178 5-183 2-179 (179)
3 PRK00454 engB GTP-binding prot 100.0 1.2E-29 2.7E-34 182.7 20.5 190 3-195 6-195 (196)
4 PF02421 FeoB_N: Ferrous iron 100.0 2.9E-29 6.4E-34 171.6 10.2 153 22-189 1-156 (156)
5 COG1159 Era GTPase [General fu 100.0 4.9E-28 1.1E-32 177.7 17.0 165 20-195 5-173 (298)
6 TIGR00436 era GTP-binding prot 100.0 9.1E-27 2E-31 175.4 18.1 161 23-195 2-165 (270)
7 cd01876 YihA_EngB The YihA (En 100.0 6.9E-26 1.5E-30 158.9 20.3 170 23-193 1-170 (170)
8 COG1160 Predicted GTPases [Gen 99.9 9.2E-27 2E-31 179.8 15.2 158 22-193 4-164 (444)
9 PRK04213 GTP-binding protein; 99.9 1.3E-25 2.9E-30 162.4 19.6 173 18-196 6-194 (201)
10 cd04171 SelB SelB subfamily. 99.9 1.6E-25 3.4E-30 156.7 18.6 155 23-191 2-163 (164)
11 PRK15494 era GTPase Era; Provi 99.9 1.1E-25 2.3E-30 174.0 17.1 164 20-195 51-217 (339)
12 cd01889 SelB_euk SelB subfamil 99.9 1.8E-25 3.8E-30 160.6 16.6 161 22-195 1-187 (192)
13 PRK00089 era GTPase Era; Revie 99.9 3E-25 6.4E-30 169.2 18.4 164 20-194 4-171 (292)
14 PF00009 GTP_EFTU: Elongation 99.9 2E-25 4.3E-30 159.8 16.2 161 20-194 2-187 (188)
15 PRK12297 obgE GTPase CgtA; Rev 99.9 3.1E-25 6.7E-30 174.5 17.2 178 2-196 125-329 (424)
16 cd01897 NOG NOG1 is a nucleola 99.9 3.3E-25 7.2E-30 155.8 15.6 159 22-193 1-167 (168)
17 cd01894 EngA1 EngA1 subfamily. 99.9 5.1E-25 1.1E-29 153.0 16.1 153 25-192 1-156 (157)
18 COG1160 Predicted GTPases [Gen 99.9 1.3E-25 2.8E-30 173.5 14.1 169 20-193 177-350 (444)
19 cd01895 EngA2 EngA2 subfamily. 99.9 2.2E-24 4.7E-29 152.0 18.0 167 21-192 2-173 (174)
20 COG0486 ThdF Predicted GTPase 99.9 2.9E-25 6.3E-30 172.0 14.5 158 21-195 217-377 (454)
21 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.3E-24 2.8E-29 152.8 16.7 157 22-194 1-166 (168)
22 PRK00093 GTP-binding protein D 99.9 2.1E-24 4.6E-29 172.9 19.8 170 19-193 171-343 (435)
23 TIGR03594 GTPase_EngA ribosome 99.9 1.6E-24 3.5E-29 173.4 18.9 171 19-194 170-344 (429)
24 cd04163 Era Era subfamily. Er 99.9 3E-24 6.4E-29 150.2 18.1 161 21-192 3-167 (168)
25 PRK12298 obgE GTPase CgtA; Rev 99.9 1.2E-24 2.7E-29 170.2 17.6 161 23-195 161-334 (390)
26 cd01898 Obg Obg subfamily. Th 99.9 5.5E-25 1.2E-29 154.9 13.3 158 23-193 2-170 (170)
27 PRK03003 GTP-binding protein D 99.9 2.7E-24 5.9E-29 173.3 18.8 170 20-194 210-382 (472)
28 cd01888 eIF2_gamma eIF2-gamma 99.9 5.1E-24 1.1E-28 154.2 18.1 160 23-195 2-200 (203)
29 cd00881 GTP_translation_factor 99.9 1.7E-24 3.7E-29 154.8 15.2 159 23-194 1-187 (189)
30 PRK12299 obgE GTPase CgtA; Rev 99.9 2.3E-24 4.9E-29 165.8 16.3 163 21-196 158-330 (335)
31 TIGR02729 Obg_CgtA Obg family 99.9 1.7E-24 3.7E-29 166.3 15.0 159 21-193 157-328 (329)
32 cd04164 trmE TrmE (MnmE, ThdF, 99.9 7.7E-24 1.7E-28 146.9 16.3 152 22-193 2-156 (157)
33 PRK12296 obgE GTPase CgtA; Rev 99.9 6.6E-24 1.4E-28 169.1 16.3 163 21-197 159-343 (500)
34 PRK03003 GTP-binding protein D 99.9 1.9E-23 4.1E-28 168.4 18.7 161 20-195 37-200 (472)
35 PRK09518 bifunctional cytidyla 99.9 2.5E-23 5.4E-28 174.8 19.7 172 18-194 447-621 (712)
36 cd01878 HflX HflX subfamily. 99.9 1.7E-23 3.8E-28 151.6 16.4 158 19-193 39-204 (204)
37 TIGR03156 GTP_HflX GTP-binding 99.9 1.5E-23 3.2E-28 162.4 16.3 156 19-192 187-350 (351)
38 cd01884 EF_Tu EF-Tu subfamily. 99.9 4.1E-23 8.9E-28 148.0 17.1 159 21-192 2-191 (195)
39 cd01879 FeoB Ferrous iron tran 99.9 1.8E-23 3.9E-28 145.4 14.7 153 26-193 1-156 (158)
40 TIGR03594 GTPase_EngA ribosome 99.9 2.8E-23 6.1E-28 166.2 17.5 157 23-194 1-160 (429)
41 TIGR00475 selB selenocysteine- 99.9 5.2E-23 1.1E-27 168.8 18.6 160 23-195 2-167 (581)
42 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.4E-24 1.2E-28 149.5 10.9 155 23-191 1-166 (167)
43 cd04149 Arf6 Arf6 subfamily. 99.9 2E-23 4.3E-28 146.9 13.7 153 20-191 8-167 (168)
44 cd04154 Arl2 Arl2 subfamily. 99.9 2.3E-23 5E-28 147.2 13.9 155 18-191 11-172 (173)
45 PRK10512 selenocysteinyl-tRNA- 99.9 1.4E-22 3E-27 166.8 19.5 160 23-195 2-167 (614)
46 cd01890 LepA LepA subfamily. 99.9 4.6E-23 1E-27 146.4 14.6 156 22-194 1-177 (179)
47 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.9E-23 4.1E-28 145.8 12.1 154 23-191 1-159 (160)
48 PRK00093 GTP-binding protein D 99.9 1.2E-22 2.7E-27 162.8 18.0 156 22-192 2-160 (435)
49 cd04165 GTPBP1_like GTPBP1-lik 99.9 2.8E-22 6E-27 146.6 18.1 156 23-191 1-220 (224)
50 PRK05291 trmE tRNA modificatio 99.9 5.5E-23 1.2E-27 164.3 15.6 153 21-194 215-370 (449)
51 PRK09518 bifunctional cytidyla 99.9 1.8E-22 3.9E-27 169.6 19.0 163 17-194 271-436 (712)
52 cd04150 Arf1_5_like Arf1-Arf5- 99.9 7.3E-23 1.6E-27 142.8 13.7 150 23-191 2-158 (159)
53 cd04157 Arl6 Arl6 subfamily. 99.9 5.5E-23 1.2E-27 143.6 13.0 153 23-191 1-161 (162)
54 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1E-22 2.3E-27 142.0 13.7 150 22-193 2-161 (162)
55 cd04166 CysN_ATPS CysN_ATPS su 99.9 1E-22 2.2E-27 147.9 13.8 150 23-185 1-185 (208)
56 cd01881 Obg_like The Obg-like 99.9 3.5E-23 7.6E-28 146.4 11.2 154 26-192 1-175 (176)
57 cd04124 RabL2 RabL2 subfamily. 99.9 2.8E-22 6E-27 140.1 15.6 152 22-194 1-158 (161)
58 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.2E-22 2.6E-27 143.7 13.8 155 20-191 14-173 (174)
59 smart00177 ARF ARF-like small 99.9 1.6E-22 3.4E-27 143.2 14.1 156 20-194 12-174 (175)
60 smart00178 SAR Sar1p-like memb 99.9 1.2E-22 2.6E-27 144.9 13.6 159 19-192 15-183 (184)
61 cd04151 Arl1 Arl1 subfamily. 99.9 1E-22 2.3E-27 141.8 13.0 150 23-191 1-157 (158)
62 PF10662 PduV-EutP: Ethanolami 99.9 1.5E-22 3.2E-27 135.7 13.0 140 22-191 2-143 (143)
63 cd00880 Era_like Era (E. coli 99.9 3.9E-22 8.5E-27 138.3 15.8 159 26-193 1-163 (163)
64 TIGR02528 EutP ethanolamine ut 99.9 2.2E-22 4.9E-27 137.7 14.1 140 23-190 2-141 (142)
65 PLN00223 ADP-ribosylation fact 99.9 3.9E-22 8.5E-27 141.8 15.9 155 20-194 16-178 (181)
66 cd01864 Rab19 Rab19 subfamily. 99.9 5.6E-22 1.2E-26 139.0 16.4 156 21-193 3-165 (165)
67 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3.6E-22 7.9E-27 139.7 15.3 153 21-194 2-164 (164)
68 cd01893 Miro1 Miro1 subfamily. 99.9 2.4E-22 5.2E-27 141.1 14.4 151 23-193 2-163 (166)
69 cd04136 Rap_like Rap-like subf 99.9 1.4E-22 3.1E-27 141.6 13.1 151 22-193 2-162 (163)
70 TIGR00487 IF-2 translation ini 99.9 4.2E-22 9.1E-27 162.9 17.6 158 18-191 84-247 (587)
71 PRK15467 ethanolamine utilizat 99.9 5.1E-22 1.1E-26 138.2 15.6 146 22-194 2-147 (158)
72 cd04158 ARD1 ARD1 subfamily. 99.9 1E-22 2.2E-27 143.4 12.0 153 23-194 1-161 (169)
73 cd04121 Rab40 Rab40 subfamily. 99.9 3.4E-22 7.4E-27 142.7 14.8 153 20-193 5-166 (189)
74 cd04119 RJL RJL (RabJ-Like) su 99.9 6.1E-22 1.3E-26 138.9 15.8 151 22-193 1-166 (168)
75 cd04175 Rap1 Rap1 subgroup. T 99.9 1.1E-22 2.4E-27 142.5 11.9 151 22-194 2-163 (164)
76 cd04140 ARHI_like ARHI subfami 99.9 4.8E-22 1E-26 139.5 15.1 150 22-192 2-163 (165)
77 PTZ00133 ADP-ribosylation fact 99.9 2.5E-22 5.4E-27 143.0 13.7 156 20-194 16-178 (182)
78 cd04120 Rab12 Rab12 subfamily. 99.9 5.6E-22 1.2E-26 143.0 15.5 151 23-193 2-162 (202)
79 PRK09554 feoB ferrous iron tra 99.9 4E-22 8.6E-27 167.4 17.0 159 21-193 3-167 (772)
80 CHL00189 infB translation init 99.9 3.6E-22 7.7E-27 165.7 16.4 159 19-193 242-409 (742)
81 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.4E-22 5.2E-27 143.3 13.3 158 21-195 3-171 (183)
82 cd01891 TypA_BipA TypA (tyrosi 99.9 8.4E-22 1.8E-26 141.7 16.2 151 21-185 2-173 (194)
83 TIGR03680 eif2g_arch translati 99.9 5.5E-22 1.2E-26 157.1 16.5 161 20-194 3-196 (406)
84 PRK05306 infB translation init 99.9 4E-22 8.7E-27 166.7 16.4 159 18-192 287-450 (787)
85 cd04155 Arl3 Arl3 subfamily. 99.9 2.4E-22 5.2E-27 141.9 12.9 157 18-191 11-172 (173)
86 cd01867 Rab8_Rab10_Rab13_like 99.9 7.9E-22 1.7E-26 138.6 15.3 155 21-193 3-164 (167)
87 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 5.4E-22 1.2E-26 139.3 14.3 153 22-194 3-164 (166)
88 smart00173 RAS Ras subfamily o 99.9 2E-22 4.3E-27 141.1 12.0 151 23-194 2-162 (164)
89 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.5E-22 5.5E-27 139.8 12.4 152 23-191 1-157 (158)
90 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.4E-22 7.5E-27 140.5 13.1 154 23-191 1-166 (167)
91 cd01868 Rab11_like Rab11-like. 99.9 6.6E-22 1.4E-26 138.6 14.5 153 21-193 3-164 (165)
92 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.8E-22 1.7E-26 139.3 14.8 152 22-194 3-164 (172)
93 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.3E-21 2.9E-26 137.8 15.8 153 23-194 2-165 (170)
94 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 9.2E-22 2E-26 142.3 15.3 153 22-194 1-168 (201)
95 PRK11058 GTPase HflX; Provisio 99.9 1.1E-21 2.3E-26 155.4 16.9 158 20-194 196-362 (426)
96 cd04127 Rab27A Rab27a subfamil 99.9 1.2E-21 2.5E-26 139.3 15.6 152 21-193 4-176 (180)
97 cd01865 Rab3 Rab3 subfamily. 99.9 1.2E-21 2.7E-26 137.4 15.4 151 22-194 2-163 (165)
98 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1E-21 2.2E-26 156.3 16.8 155 20-193 202-359 (442)
99 cd04122 Rab14 Rab14 subfamily. 99.9 7.2E-22 1.6E-26 138.7 14.1 151 22-193 3-163 (166)
100 cd04142 RRP22 RRP22 subfamily. 99.9 8.4E-22 1.8E-26 141.9 14.7 159 22-192 1-172 (198)
101 cd00879 Sar1 Sar1 subfamily. 99.9 3.5E-22 7.6E-27 143.2 12.6 158 20-192 18-189 (190)
102 cd01861 Rab6 Rab6 subfamily. 99.9 1E-21 2.3E-26 137.0 14.5 150 23-192 2-160 (161)
103 PTZ00369 Ras-like protein; Pro 99.9 7.4E-22 1.6E-26 141.4 14.0 154 20-194 4-167 (189)
104 cd00877 Ran Ran (Ras-related n 99.9 5.9E-22 1.3E-26 139.1 13.1 149 22-194 1-159 (166)
105 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.3E-21 2.8E-26 137.0 14.6 152 22-193 1-163 (164)
106 cd04106 Rab23_lke Rab23-like s 99.9 1.6E-21 3.4E-26 136.2 15.0 149 23-192 2-161 (162)
107 TIGR00491 aIF-2 translation in 99.9 2.3E-21 4.9E-26 158.4 18.1 158 20-193 3-215 (590)
108 cd01896 DRG The developmentall 99.9 1.8E-21 3.9E-26 143.4 15.8 156 23-198 2-230 (233)
109 PLN03071 GTP-binding nuclear p 99.9 1.3E-21 2.9E-26 143.0 15.0 157 17-193 9-171 (219)
110 cd04144 Ras2 Ras2 subfamily. 99.9 1.1E-21 2.4E-26 140.7 14.3 151 23-194 1-163 (190)
111 cd01860 Rab5_related Rab5-rela 99.9 1.8E-21 3.9E-26 136.1 15.0 154 22-193 2-162 (163)
112 COG0370 FeoB Fe2+ transport sy 99.9 7.9E-22 1.7E-26 159.0 14.9 157 21-193 3-163 (653)
113 KOG0092 GTPase Rab5/YPT51 and 99.9 1.4E-22 3.1E-27 139.4 8.9 158 19-196 3-169 (200)
114 PRK12317 elongation factor 1-a 99.9 1.4E-21 3E-26 156.0 16.0 153 19-184 4-195 (425)
115 cd01866 Rab2 Rab2 subfamily. 99.9 2.9E-21 6.3E-26 135.8 15.9 155 21-193 4-165 (168)
116 PRK04000 translation initiatio 99.9 1.9E-21 4.1E-26 154.0 16.6 163 19-194 7-201 (411)
117 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.1E-21 2.3E-26 139.7 13.4 154 22-195 1-167 (182)
118 cd04134 Rho3 Rho3 subfamily. 99.9 1.4E-21 3E-26 140.0 14.1 156 22-195 1-175 (189)
119 cd01863 Rab18 Rab18 subfamily. 99.9 1.3E-21 2.9E-26 136.5 13.6 152 22-192 1-160 (161)
120 smart00175 RAB Rab subfamily o 99.9 4.1E-21 9E-26 134.3 15.9 153 22-194 1-162 (164)
121 cd04112 Rab26 Rab26 subfamily. 99.9 3.7E-21 7.9E-26 138.1 15.9 155 22-196 1-165 (191)
122 PRK12736 elongation factor Tu; 99.9 4.2E-21 9.2E-26 151.5 17.6 163 19-194 10-201 (394)
123 cd04176 Rap2 Rap2 subgroup. T 99.9 9.6E-22 2.1E-26 137.5 12.5 150 22-193 2-162 (163)
124 cd04110 Rab35 Rab35 subfamily. 99.9 1.8E-21 3.9E-26 140.6 14.1 153 20-193 5-166 (199)
125 cd00154 Rab Rab family. Rab G 99.9 3.1E-21 6.6E-26 133.8 14.8 151 22-190 1-158 (159)
126 COG1163 DRG Predicted GTPase [ 99.9 5.6E-22 1.2E-26 146.9 11.5 163 16-198 58-293 (365)
127 cd01883 EF1_alpha Eukaryotic e 99.9 2.1E-21 4.5E-26 142.1 14.4 148 23-183 1-194 (219)
128 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.8E-21 3.9E-26 138.4 13.6 155 19-192 3-178 (182)
129 PTZ00327 eukaryotic translatio 99.9 2.8E-21 6.1E-26 153.8 16.1 164 19-195 32-234 (460)
130 PLN03118 Rab family protein; P 99.9 5.7E-21 1.2E-25 139.1 16.5 159 17-194 10-177 (211)
131 cd04113 Rab4 Rab4 subfamily. 99.9 1.9E-21 4.2E-26 135.7 13.4 153 22-192 1-160 (161)
132 cd04139 RalA_RalB RalA/RalB su 99.9 2.1E-21 4.6E-26 135.7 13.5 151 22-194 1-162 (164)
133 KOG1489 Predicted GTP-binding 99.9 1.2E-21 2.7E-26 144.5 12.8 157 21-192 196-365 (366)
134 cd04116 Rab9 Rab9 subfamily. 99.9 2.6E-21 5.6E-26 136.3 14.0 153 20-192 4-169 (170)
135 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 4.2E-21 9E-26 132.3 14.4 154 21-196 22-187 (221)
136 cd04132 Rho4_like Rho4-like su 99.9 1.4E-21 3E-26 139.8 12.7 154 22-194 1-167 (187)
137 cd01862 Rab7 Rab7 subfamily. 99.9 4E-21 8.7E-26 135.4 14.9 156 22-194 1-167 (172)
138 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.5E-21 5.4E-26 137.0 13.5 153 22-192 2-173 (175)
139 PLN03110 Rab GTPase; Provision 99.9 8.3E-21 1.8E-25 138.7 16.4 155 19-194 10-174 (216)
140 cd04109 Rab28 Rab28 subfamily. 99.9 6.7E-21 1.5E-25 139.1 15.8 153 22-195 1-167 (215)
141 cd04117 Rab15 Rab15 subfamily. 99.9 8.4E-21 1.8E-25 132.6 15.4 147 23-192 2-160 (161)
142 cd04118 Rab24 Rab24 subfamily. 99.9 2.6E-21 5.5E-26 139.1 13.1 154 22-193 1-165 (193)
143 COG1084 Predicted GTPase [Gene 99.9 1.5E-20 3.3E-25 139.7 17.3 168 12-192 157-334 (346)
144 cd01875 RhoG RhoG subfamily. 99.9 3.4E-21 7.4E-26 138.2 13.4 154 22-193 4-176 (191)
145 CHL00071 tufA elongation facto 99.9 8.5E-21 1.8E-25 150.5 16.9 162 19-193 10-210 (409)
146 KOG1423 Ras-like GTPase ERA [C 99.9 6.2E-21 1.3E-25 140.2 14.7 175 19-195 70-272 (379)
147 cd04126 Rab20 Rab20 subfamily. 99.9 3.7E-21 8E-26 140.2 13.5 154 22-193 1-189 (220)
148 cd04104 p47_IIGP_like p47 (47- 99.9 9.4E-21 2E-25 136.5 15.4 165 22-196 2-186 (197)
149 cd04147 Ras_dva Ras-dva subfam 99.9 4.7E-21 1E-25 138.3 13.8 153 23-194 1-163 (198)
150 cd04131 Rnd Rnd subfamily. Th 99.9 4.1E-21 9E-26 136.2 13.2 152 22-192 2-174 (178)
151 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 6.8E-21 1.5E-25 139.7 14.7 156 19-193 11-187 (232)
152 cd04114 Rab30 Rab30 subfamily. 99.9 4.9E-21 1.1E-25 134.7 13.3 154 20-193 6-168 (169)
153 TIGR00437 feoB ferrous iron tr 99.9 5.4E-21 1.2E-25 157.1 15.1 151 28-193 1-154 (591)
154 PRK12735 elongation factor Tu; 99.9 1.9E-20 4E-25 148.0 17.5 163 19-194 10-203 (396)
155 PRK04004 translation initiatio 99.9 2.8E-20 6E-25 152.6 19.0 158 18-191 3-215 (586)
156 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 3.5E-21 7.6E-26 134.9 11.9 151 23-191 1-163 (164)
157 PRK09866 hypothetical protein; 99.9 3.9E-20 8.4E-25 149.1 19.2 118 67-192 230-351 (741)
158 cd04125 RabA_like RabA-like su 99.9 1.4E-20 3E-25 134.8 15.1 154 22-194 1-162 (188)
159 cd04123 Rab21 Rab21 subfamily. 99.9 1.5E-20 3.2E-25 131.1 14.8 151 22-193 1-161 (162)
160 cd00157 Rho Rho (Ras homology) 99.9 5E-21 1.1E-25 134.8 12.3 152 22-191 1-170 (171)
161 cd04133 Rop_like Rop subfamily 99.9 5.3E-21 1.1E-25 135.2 12.3 153 22-193 2-172 (176)
162 cd01870 RhoA_like RhoA-like su 99.9 8.4E-21 1.8E-25 134.3 13.4 155 21-193 1-174 (175)
163 cd04159 Arl10_like Arl10-like 99.9 1.3E-20 2.9E-25 130.7 14.1 150 24-191 2-158 (159)
164 cd01871 Rac1_like Rac1-like su 99.9 1.2E-20 2.6E-25 133.4 14.1 153 22-192 2-173 (174)
165 COG3596 Predicted GTPase [Gene 99.9 2.3E-20 5.1E-25 135.7 15.7 167 18-195 36-223 (296)
166 PRK00049 elongation factor Tu; 99.9 2.7E-20 5.7E-25 147.0 17.2 163 18-193 9-202 (396)
167 PF00025 Arf: ADP-ribosylation 99.9 4E-21 8.7E-26 135.9 11.4 158 19-193 12-175 (175)
168 cd04115 Rab33B_Rab33A Rab33B/R 99.9 3.2E-20 6.9E-25 130.8 15.9 151 21-193 2-168 (170)
169 PF01926 MMR_HSR1: 50S ribosom 99.9 6E-21 1.3E-25 126.2 11.3 113 23-141 1-116 (116)
170 TIGR00231 small_GTP small GTP- 99.9 1.2E-20 2.7E-25 130.6 13.4 154 22-190 2-160 (161)
171 TIGR02034 CysN sulfate adenyly 99.9 2.2E-20 4.8E-25 147.9 16.5 150 22-184 1-187 (406)
172 KOG0084 GTPase Rab1/YPT1, smal 99.9 1E-20 2.2E-25 130.7 12.6 151 21-194 9-172 (205)
173 cd04148 RGK RGK subfamily. Th 99.9 1.1E-20 2.4E-25 138.4 13.6 153 22-195 1-164 (221)
174 cd04143 Rhes_like Rhes_like su 99.9 1.6E-20 3.4E-25 139.4 14.5 152 23-194 2-171 (247)
175 cd04146 RERG_RasL11_like RERG/ 99.9 7.5E-21 1.6E-25 133.3 12.2 152 23-194 1-164 (165)
176 cd04177 RSR1 RSR1 subgroup. R 99.9 6.4E-21 1.4E-25 134.1 11.8 151 22-193 2-163 (168)
177 TIGR00485 EF-Tu translation el 99.9 2.8E-20 6.1E-25 147.0 16.5 162 18-192 9-199 (394)
178 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 2.7E-20 5.8E-25 134.1 14.9 168 22-195 1-185 (196)
179 smart00174 RHO Rho (Ras homolo 99.9 8.2E-21 1.8E-25 134.2 11.9 152 24-193 1-171 (174)
180 cd04111 Rab39 Rab39 subfamily. 99.9 2.4E-20 5.3E-25 135.7 13.9 152 21-193 2-165 (211)
181 cd04130 Wrch_1 Wrch-1 subfamil 99.9 7.7E-21 1.7E-25 134.3 11.0 152 22-191 1-171 (173)
182 TIGR00483 EF-1_alpha translati 99.9 5.1E-20 1.1E-24 147.0 16.8 153 19-184 5-197 (426)
183 KOG0078 GTP-binding protein SE 99.9 5.5E-20 1.2E-24 128.8 14.8 155 17-194 8-174 (207)
184 TIGR01393 lepA GTP-binding pro 99.9 5E-20 1.1E-24 151.5 17.0 158 21-195 3-181 (595)
185 cd04137 RheB Rheb (Ras Homolog 99.9 1.3E-20 2.8E-25 133.9 11.9 153 22-195 2-164 (180)
186 PLN03127 Elongation factor Tu; 99.9 7.3E-20 1.6E-24 145.9 17.4 162 20-194 60-252 (447)
187 cd00876 Ras Ras family. The R 99.8 2.4E-20 5.1E-25 129.8 12.4 149 23-192 1-159 (160)
188 cd04135 Tc10 TC10 subfamily. 99.8 1.2E-20 2.6E-25 133.3 11.0 154 22-193 1-173 (174)
189 cd04103 Centaurin_gamma Centau 99.8 2.7E-20 5.8E-25 129.6 12.4 146 22-192 1-157 (158)
190 PLN03108 Rab family protein; P 99.8 1.3E-19 2.8E-24 131.9 16.5 156 20-193 5-167 (210)
191 smart00176 RAN Ran (Ras-relate 99.8 3.1E-20 6.7E-25 133.7 13.0 143 27-193 1-153 (200)
192 PRK05506 bifunctional sulfate 99.8 9.3E-20 2E-24 151.8 17.6 154 18-184 21-211 (632)
193 cd01892 Miro2 Miro2 subfamily. 99.8 2.8E-20 6.1E-25 131.0 12.4 154 20-193 3-165 (169)
194 COG0532 InfB Translation initi 99.8 5.5E-20 1.2E-24 144.7 15.1 160 19-194 3-170 (509)
195 TIGR01394 TypA_BipA GTP-bindin 99.8 7.3E-20 1.6E-24 150.2 16.0 160 22-195 2-192 (594)
196 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 8E-20 1.7E-24 133.3 14.5 152 22-192 2-174 (222)
197 PTZ00141 elongation factor 1- 99.8 9.9E-20 2.1E-24 145.4 16.2 160 19-191 5-222 (446)
198 PRK05124 cysN sulfate adenylyl 99.8 9.9E-20 2.2E-24 146.4 16.2 154 19-185 25-216 (474)
199 PRK05433 GTP-binding protein L 99.8 8.6E-20 1.9E-24 150.2 15.9 160 19-195 5-185 (600)
200 PLN03126 Elongation factor Tu; 99.8 2.1E-19 4.5E-24 144.1 17.4 149 19-180 79-248 (478)
201 COG2262 HflX GTPases [General 99.8 1.1E-19 2.5E-24 138.9 14.6 162 17-195 188-357 (411)
202 cd04168 TetM_like Tet(M)-like 99.8 1.1E-19 2.4E-24 134.0 13.9 158 23-194 1-235 (237)
203 PRK10218 GTP-binding protein; 99.8 2.9E-19 6.3E-24 146.6 17.0 163 19-195 3-196 (607)
204 COG0536 Obg Predicted GTPase [ 99.8 1.9E-19 4.2E-24 134.4 14.4 160 23-195 161-334 (369)
205 KOG1191 Mitochondrial GTPase [ 99.8 4.5E-20 9.7E-25 143.4 11.4 165 21-194 268-450 (531)
206 KOG1145 Mitochondrial translat 99.8 2.5E-19 5.3E-24 140.8 15.5 160 19-194 151-316 (683)
207 KOG0394 Ras-related GTPase [Ge 99.8 1.4E-19 3E-24 123.7 11.2 161 18-193 6-177 (210)
208 cd01873 RhoBTB RhoBTB subfamil 99.8 2.2E-19 4.8E-24 128.9 12.6 153 22-192 3-194 (195)
209 cd04105 SR_beta Signal recogni 99.8 6.4E-19 1.4E-23 127.4 14.3 155 22-191 1-202 (203)
210 cd01885 EF2 EF2 (for archaea a 99.8 1.7E-18 3.7E-23 126.2 16.5 111 22-145 1-138 (222)
211 cd01850 CDC_Septin CDC/Septin. 99.8 2.9E-18 6.3E-23 129.2 18.0 152 21-177 4-185 (276)
212 KOG2486 Predicted GTPase [Gene 99.8 1.9E-19 4.2E-24 130.8 10.3 180 12-191 127-313 (320)
213 cd04167 Snu114p Snu114p subfam 99.8 5.8E-19 1.3E-23 128.7 12.7 159 22-193 1-210 (213)
214 cd04129 Rho2 Rho2 subfamily. 99.8 8.4E-19 1.8E-23 125.4 13.3 158 22-197 2-176 (187)
215 cd00882 Ras_like_GTPase Ras-li 99.8 6.7E-19 1.4E-23 120.8 11.9 147 26-191 1-157 (157)
216 KOG0073 GTP-binding ADP-ribosy 99.8 3.6E-18 7.9E-23 114.6 14.8 158 19-194 14-178 (185)
217 cd04170 EF-G_bact Elongation f 99.8 1.7E-18 3.8E-23 130.4 14.9 112 23-147 1-131 (268)
218 KOG0098 GTPase Rab2, small G p 99.8 8.8E-19 1.9E-23 120.0 11.6 155 19-191 4-165 (216)
219 KOG0462 Elongation factor-type 99.8 3.7E-19 7.9E-24 139.8 11.0 163 16-195 55-236 (650)
220 cd01886 EF-G Elongation factor 99.8 1.1E-18 2.5E-23 130.9 12.8 139 23-177 1-158 (270)
221 COG2229 Predicted GTPase [Gene 99.8 8E-18 1.7E-22 115.4 15.6 157 18-192 7-176 (187)
222 PLN00043 elongation factor 1-a 99.8 3.5E-18 7.7E-23 136.4 16.0 152 20-184 6-203 (447)
223 PF00071 Ras: Ras family; Int 99.8 2.7E-18 6E-23 119.8 13.3 150 23-193 1-160 (162)
224 KOG0080 GTPase Rab18, small G 99.8 1.6E-18 3.5E-23 115.9 11.0 149 21-193 11-173 (209)
225 PRK00007 elongation factor G; 99.8 4.2E-18 9.1E-23 143.0 16.2 117 18-147 7-142 (693)
226 PTZ00132 GTP-binding nuclear p 99.8 9.4E-18 2E-22 122.6 15.5 153 17-193 5-167 (215)
227 COG5256 TEF1 Translation elong 99.8 7.2E-18 1.6E-22 129.1 15.3 154 19-185 5-202 (428)
228 KOG0075 GTP-binding ADP-ribosy 99.8 8.1E-19 1.8E-23 115.6 8.6 158 21-197 20-185 (186)
229 COG5257 GCD11 Translation init 99.8 4E-18 8.7E-23 126.3 13.3 162 19-194 8-202 (415)
230 PRK12739 elongation factor G; 99.8 5.7E-18 1.2E-22 142.2 15.5 118 17-147 4-140 (691)
231 cd01853 Toc34_like Toc34-like 99.8 6.2E-17 1.4E-21 119.9 18.6 129 18-148 28-165 (249)
232 KOG1490 GTP-binding protein CR 99.8 6.8E-19 1.5E-23 137.0 8.5 181 9-197 154-344 (620)
233 cd01882 BMS1 Bms1. Bms1 is an 99.8 2.2E-17 4.9E-22 121.1 15.5 142 20-179 38-181 (225)
234 KOG0079 GTP-binding protein H- 99.8 2.7E-18 5.8E-23 113.4 9.4 152 21-193 8-168 (198)
235 TIGR00484 EF-G translation elo 99.8 1.6E-17 3.4E-22 139.6 16.2 118 17-147 6-142 (689)
236 cd04169 RF3 RF3 subfamily. Pe 99.8 2.2E-17 4.8E-22 123.8 14.8 127 21-161 2-151 (267)
237 COG2895 CysN GTPases - Sulfate 99.8 1.5E-17 3.2E-22 124.8 13.1 151 20-183 5-192 (431)
238 PRK00741 prfC peptide chain re 99.8 2.7E-17 5.8E-22 133.6 15.4 115 19-146 8-145 (526)
239 cd01899 Ygr210 Ygr210 subfamil 99.8 2.9E-17 6.4E-22 125.5 14.7 156 24-195 1-270 (318)
240 KOG0087 GTPase Rab11/YPT3, sma 99.8 7.3E-18 1.6E-22 117.8 9.7 148 21-191 14-173 (222)
241 PRK13351 elongation factor G; 99.8 2.4E-17 5.1E-22 138.8 14.6 118 17-147 4-140 (687)
242 COG3276 SelB Selenocysteine-sp 99.8 4.8E-17 1E-21 125.4 14.7 156 23-194 2-162 (447)
243 TIGR00503 prfC peptide chain r 99.7 9.1E-17 2E-21 130.5 15.9 115 19-146 9-146 (527)
244 PF04548 AIG1: AIG1 family; I 99.7 7.6E-17 1.6E-21 117.3 13.7 167 22-194 1-186 (212)
245 PF05049 IIGP: Interferon-indu 99.7 3.1E-17 6.8E-22 126.4 11.9 166 20-197 34-221 (376)
246 PRK13768 GTPase; Provisional 99.7 6.3E-17 1.4E-21 120.6 13.0 123 67-195 97-248 (253)
247 KOG0095 GTPase Rab30, small G 99.7 2.5E-16 5.4E-21 104.3 14.1 149 21-191 7-166 (213)
248 PRK09602 translation-associate 99.7 1.1E-16 2.4E-21 125.8 14.6 85 22-114 2-113 (396)
249 KOG0076 GTP-binding ADP-ribosy 99.7 3.9E-17 8.4E-22 110.7 10.0 161 21-195 17-188 (197)
250 COG4917 EutP Ethanolamine util 99.7 6.2E-17 1.3E-21 104.0 10.3 143 22-192 2-144 (148)
251 KOG0093 GTPase Rab3, small G p 99.7 1.9E-16 4E-21 104.6 12.1 151 21-194 21-183 (193)
252 COG1100 GTPase SAR1 and relate 99.7 4.7E-16 1E-20 113.8 15.8 156 22-193 6-184 (219)
253 KOG0070 GTP-binding ADP-ribosy 99.7 2.6E-17 5.6E-22 113.1 8.3 164 16-196 12-180 (181)
254 PF00735 Septin: Septin; Inte 99.7 2.4E-16 5.1E-21 118.8 14.1 170 22-196 5-204 (281)
255 KOG0090 Signal recognition par 99.7 1.1E-16 2.5E-21 112.2 11.1 160 20-193 37-238 (238)
256 cd04102 RabL3 RabL3 (Rab-like3 99.7 3.3E-16 7.1E-21 112.8 13.9 135 23-179 2-175 (202)
257 KOG0086 GTPase Rab4, small G p 99.7 5.2E-16 1.1E-20 103.2 12.6 148 21-190 9-167 (214)
258 PF09439 SRPRB: Signal recogni 99.7 3.8E-17 8.2E-22 114.4 7.4 129 20-162 2-142 (181)
259 KOG0071 GTP-binding ADP-ribosy 99.7 2.5E-16 5.4E-21 103.2 9.9 156 21-194 17-178 (180)
260 KOG0461 Selenocysteine-specifi 99.7 2.2E-15 4.8E-20 113.0 15.9 159 22-193 8-192 (522)
261 PRK09435 membrane ATPase/prote 99.7 4E-15 8.7E-20 114.0 17.5 111 66-196 148-262 (332)
262 PRK14845 translation initiatio 99.7 8.5E-16 1.8E-20 131.8 15.3 146 33-193 473-672 (1049)
263 smart00053 DYNc Dynamin, GTPas 99.7 1.5E-15 3.2E-20 111.5 14.3 80 67-148 125-208 (240)
264 COG1217 TypA Predicted membran 99.7 5.1E-16 1.1E-20 120.3 12.3 162 20-195 4-196 (603)
265 KOG1532 GTPase XAB1, interacts 99.7 2.9E-16 6.3E-21 114.3 9.9 122 68-194 117-264 (366)
266 PTZ00258 GTP-binding protein; 99.7 1E-15 2.3E-20 119.2 13.3 89 19-115 19-127 (390)
267 KOG0072 GTP-binding ADP-ribosy 99.7 3.2E-16 7E-21 103.1 8.8 158 20-195 17-180 (182)
268 KOG0395 Ras-related GTPase [Ge 99.7 8.2E-16 1.8E-20 110.1 11.5 155 20-195 2-166 (196)
269 PLN00116 translation elongatio 99.7 1.5E-15 3.2E-20 130.0 14.9 115 18-145 16-163 (843)
270 PRK12740 elongation factor G; 99.7 8.8E-16 1.9E-20 129.1 13.0 108 27-147 1-127 (668)
271 KOG1144 Translation initiation 99.7 2.3E-15 5E-20 122.2 14.2 161 19-194 473-687 (1064)
272 TIGR00991 3a0901s02IAP34 GTP-b 99.7 9.8E-15 2.1E-19 110.0 16.3 124 19-147 36-168 (313)
273 PTZ00416 elongation factor 2; 99.7 3.6E-15 7.8E-20 127.4 15.6 132 18-162 16-184 (836)
274 COG0481 LepA Membrane GTPase L 99.7 4.9E-16 1.1E-20 120.7 8.9 162 17-195 5-187 (603)
275 KOG1486 GTP-binding protein DR 99.7 7.8E-16 1.7E-20 110.8 9.2 162 17-198 58-292 (364)
276 PLN00023 GTP-binding protein; 99.7 4.7E-15 1E-19 112.4 13.7 120 15-147 15-166 (334)
277 KOG0091 GTPase Rab39, small G 99.6 4.5E-15 9.7E-20 99.8 11.4 149 22-192 9-171 (213)
278 COG5019 CDC3 Septin family pro 99.6 1.4E-14 3.1E-19 109.7 15.4 173 19-196 21-225 (373)
279 KOG0074 GTP-binding ADP-ribosy 99.6 6.7E-16 1.4E-20 101.4 6.9 161 18-194 14-179 (185)
280 PRK07560 elongation factor EF- 99.6 5.2E-15 1.1E-19 125.1 14.2 114 19-145 18-152 (731)
281 KOG0088 GTPase Rab21, small G 99.6 9.7E-16 2.1E-20 102.5 7.2 155 19-191 11-172 (218)
282 PF00350 Dynamin_N: Dynamin fa 99.6 3.6E-15 7.8E-20 104.8 9.0 67 67-142 101-168 (168)
283 KOG0081 GTPase Rab27, small G 99.6 2.1E-15 4.5E-20 101.0 7.2 148 22-192 10-179 (219)
284 KOG0458 Elongation factor 1 al 99.6 3.6E-14 7.8E-19 112.8 14.8 156 17-185 173-373 (603)
285 PF08477 Miro: Miro-like prote 99.6 2.7E-15 5.9E-20 99.4 7.2 108 23-143 1-119 (119)
286 KOG1547 Septin CDC10 and relat 99.6 5.9E-14 1.3E-18 100.5 14.2 171 21-196 46-246 (336)
287 TIGR00073 hypB hydrogenase acc 99.6 1E-14 2.2E-19 105.9 10.6 58 131-193 147-206 (207)
288 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 1.6E-14 3.5E-19 105.4 11.4 159 23-191 1-173 (232)
289 PRK09601 GTP-binding protein Y 99.6 4.5E-14 9.7E-19 109.0 14.3 86 22-115 3-108 (364)
290 KOG0083 GTPase Rab26/Rab37, sm 99.6 1.1E-15 2.3E-20 99.5 4.5 147 26-194 2-160 (192)
291 KOG0097 GTPase Rab14, small G 99.6 1.9E-14 4.1E-19 94.6 9.9 149 21-187 11-166 (215)
292 KOG2655 Septin family protein 99.6 7.5E-14 1.6E-18 106.6 14.7 152 21-177 21-200 (366)
293 COG4108 PrfC Peptide chain rel 99.6 1.9E-14 4.1E-19 111.0 11.3 116 19-147 10-148 (528)
294 KOG1707 Predicted Ras related/ 99.6 1E-14 2.2E-19 115.9 9.9 156 20-192 8-173 (625)
295 KOG3883 Ras family small GTPas 99.6 8.2E-14 1.8E-18 92.8 12.1 156 20-193 8-174 (198)
296 TIGR00750 lao LAO/AO transport 99.6 2.7E-13 5.9E-18 103.6 16.3 109 66-194 126-238 (300)
297 PRK10463 hydrogenase nickel in 99.6 1.5E-14 3.2E-19 108.3 8.3 161 17-193 100-288 (290)
298 PF03308 ArgK: ArgK protein; 99.6 6.4E-14 1.4E-18 102.3 10.7 151 20-195 28-231 (266)
299 PF03029 ATP_bind_1: Conserved 99.5 3.7E-13 7.9E-18 99.3 14.8 117 68-194 92-237 (238)
300 TIGR00993 3a0901s04IAP86 chlor 99.5 8.3E-13 1.8E-17 107.6 17.1 126 20-147 117-251 (763)
301 COG0050 TufB GTPases - transla 99.5 3.6E-13 7.9E-18 99.2 13.6 150 20-182 11-182 (394)
302 TIGR02836 spore_IV_A stage IV 99.5 1.4E-13 3E-18 106.6 11.7 163 19-190 15-233 (492)
303 TIGR00490 aEF-2 translation el 99.5 2.6E-14 5.6E-19 120.7 8.2 115 19-146 17-152 (720)
304 PTZ00099 rab6; Provisional 99.5 1.7E-13 3.8E-18 96.9 10.0 112 66-195 28-143 (176)
305 COG1703 ArgK Putative periplas 99.5 5.2E-13 1.1E-17 98.9 12.7 156 21-196 51-256 (323)
306 COG0012 Predicted GTPase, prob 99.5 3.6E-13 7.8E-18 102.8 12.1 87 21-115 2-109 (372)
307 COG5258 GTPBP1 GTPase [General 99.5 3.1E-13 6.7E-18 102.9 11.5 160 18-190 114-335 (527)
308 KOG0410 Predicted GTP binding 99.5 1.4E-13 3E-18 102.6 8.8 156 17-194 174-341 (410)
309 KOG4252 GTP-binding protein [S 99.5 2.6E-14 5.7E-19 97.6 4.5 153 19-193 18-180 (246)
310 COG5192 BMS1 GTP-binding prote 99.5 4.8E-13 1E-17 106.5 11.6 140 20-178 68-210 (1077)
311 KOG0466 Translation initiation 99.5 2.2E-13 4.8E-18 100.9 9.0 162 20-194 37-241 (466)
312 KOG0393 Ras-related small GTPa 99.5 1.1E-13 2.3E-18 97.6 7.0 156 20-193 3-178 (198)
313 TIGR00101 ureG urease accessor 99.5 7.6E-13 1.6E-17 95.2 11.1 82 104-194 113-196 (199)
314 KOG1954 Endocytosis/signaling 99.5 1.1E-12 2.4E-17 99.5 12.3 156 19-177 56-257 (532)
315 COG0480 FusA Translation elong 99.5 4.3E-13 9.4E-18 111.5 10.8 131 18-162 7-157 (697)
316 COG0378 HypB Ni2+-binding GTPa 99.5 2.7E-13 6E-18 94.5 8.0 164 21-193 13-200 (202)
317 KOG1487 GTP-binding protein DR 99.5 8.3E-14 1.8E-18 100.9 4.9 159 20-198 58-285 (358)
318 cd01900 YchF YchF subfamily. 99.4 4.4E-13 9.6E-18 100.4 8.1 84 24-115 1-104 (274)
319 TIGR03597 GTPase_YqeH ribosome 99.4 6.9E-13 1.5E-17 103.7 6.4 136 22-160 155-294 (360)
320 cd01858 NGP_1 NGP-1. Autoanti 99.4 2.1E-12 4.5E-17 89.8 7.6 57 20-77 101-157 (157)
321 cd01859 MJ1464 MJ1464. This f 99.4 1.2E-11 2.6E-16 85.9 11.2 95 90-194 2-96 (156)
322 cd04178 Nucleostemin_like Nucl 99.4 2.7E-12 5.9E-17 90.2 7.5 56 21-77 117-172 (172)
323 KOG3886 GTP-binding protein [S 99.3 1.3E-11 2.9E-16 88.1 10.3 145 20-178 3-163 (295)
324 KOG3859 Septins (P-loop GTPase 99.3 1.5E-11 3.3E-16 90.2 9.3 171 21-196 42-236 (406)
325 KOG0077 Vesicle coat complex C 99.3 2.2E-11 4.8E-16 82.4 8.9 156 21-192 20-191 (193)
326 KOG1143 Predicted translation 99.3 3.4E-11 7.4E-16 91.7 10.5 159 21-192 167-386 (591)
327 KOG0460 Mitochondrial translat 99.3 1.6E-10 3.4E-15 87.1 13.4 146 19-177 52-218 (449)
328 cd01858 NGP_1 NGP-1. Autoanti 99.2 3.8E-11 8.1E-16 83.5 8.1 88 101-194 6-95 (157)
329 cd01857 HSR1_MMR1 HSR1/MMR1. 99.2 3.5E-11 7.6E-16 82.1 7.2 54 23-77 85-138 (141)
330 KOG0468 U5 snRNP-specific prot 99.2 3.7E-11 8.1E-16 97.3 7.9 114 18-145 125-262 (971)
331 cd01849 YlqF_related_GTPase Yl 99.2 4.3E-11 9.3E-16 83.0 7.2 58 19-77 98-155 (155)
332 KOG0448 Mitofusin 1 GTPase, in 99.2 2.4E-10 5.3E-15 92.8 11.9 102 67-178 206-310 (749)
333 COG1161 Predicted GTPases [Gen 99.2 4E-11 8.6E-16 92.4 7.1 59 20-79 131-189 (322)
334 KOG0463 GTP-binding protein GP 99.2 1.9E-10 4.2E-15 87.8 10.6 158 20-190 132-354 (641)
335 KOG1491 Predicted GTP-binding 99.2 4.8E-10 1E-14 84.5 12.1 88 20-115 19-126 (391)
336 PRK09563 rbgA GTPase YlqF; Rev 99.2 7.7E-11 1.7E-15 89.7 7.9 60 20-80 120-179 (287)
337 cd01855 YqeH YqeH. YqeH is an 99.2 4.9E-11 1.1E-15 85.5 6.5 57 21-77 127-190 (190)
338 cd01856 YlqF YlqF. Proteins o 99.2 3.3E-10 7.3E-15 79.8 10.6 94 91-193 7-100 (171)
339 cd01855 YqeH YqeH. YqeH is an 99.2 4.1E-10 8.9E-15 80.7 10.3 90 102-193 33-124 (190)
340 TIGR03596 GTPase_YlqF ribosome 99.2 9.5E-11 2.1E-15 88.7 7.3 59 20-79 117-175 (276)
341 TIGR03596 GTPase_YlqF ribosome 99.2 6.6E-10 1.4E-14 84.1 11.6 95 91-194 9-103 (276)
342 cd01849 YlqF_related_GTPase Yl 99.1 3.9E-10 8.5E-15 78.2 9.0 82 105-192 1-83 (155)
343 cd01856 YlqF YlqF. Proteins o 99.1 3.2E-10 7E-15 79.9 8.0 57 20-77 114-170 (171)
344 KOG0467 Translation elongation 99.1 7.5E-10 1.6E-14 91.0 10.7 112 17-143 5-135 (887)
345 PRK12288 GTPase RsgA; Reviewed 99.1 3.8E-10 8.2E-15 87.7 8.4 56 23-79 207-269 (347)
346 PF03193 DUF258: Protein of un 99.1 5.7E-11 1.2E-15 81.8 3.1 58 22-79 36-99 (161)
347 PRK09563 rbgA GTPase YlqF; Rev 99.1 1.7E-09 3.7E-14 82.3 11.3 95 91-194 12-106 (287)
348 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 1E-09 2.2E-14 74.9 9.0 78 96-180 4-83 (141)
349 COG0523 Putative GTPases (G3E 99.1 3.8E-09 8.3E-14 81.0 12.8 142 22-176 2-184 (323)
350 KOG0459 Polypeptide release fa 99.1 2.5E-10 5.4E-15 87.7 6.1 158 17-187 75-279 (501)
351 cd01859 MJ1464 MJ1464. This f 99.1 7E-10 1.5E-14 77.0 7.7 57 20-77 100-156 (156)
352 cd03112 CobW_like The function 99.0 1.9E-09 4.1E-14 74.9 8.9 114 22-144 1-158 (158)
353 cd01851 GBP Guanylate-binding 99.0 3.2E-09 6.9E-14 77.9 10.2 91 19-115 5-103 (224)
354 PRK12289 GTPase RsgA; Reviewed 99.0 4.8E-10 1E-14 87.1 6.1 57 23-80 174-237 (352)
355 KOG0447 Dynamin-like GTP bindi 99.0 4.6E-09 1E-13 83.9 11.6 134 14-147 301-494 (980)
356 KOG1673 Ras GTPases [General f 99.0 2.8E-09 6.2E-14 71.6 8.7 156 20-191 19-183 (205)
357 PRK13796 GTPase YqeH; Provisio 99.0 7E-10 1.5E-14 87.0 6.8 57 22-78 161-221 (365)
358 TIGR00157 ribosome small subun 99.0 8.6E-10 1.9E-14 82.0 6.8 56 22-79 121-183 (245)
359 PF02492 cobW: CobW/HypB/UreG, 99.0 1.2E-09 2.7E-14 77.4 5.6 128 22-160 1-170 (178)
360 TIGR00092 GTP-binding protein 99.0 2E-09 4.2E-14 83.6 7.0 87 22-115 3-109 (368)
361 PRK12289 GTPase RsgA; Reviewed 98.9 7.3E-09 1.6E-13 80.6 9.2 84 102-192 88-173 (352)
362 PRK10416 signal recognition pa 98.9 2.2E-08 4.8E-13 77.0 11.2 152 20-187 113-303 (318)
363 PRK00098 GTPase RsgA; Reviewed 98.9 5.9E-09 1.3E-13 79.8 7.8 57 22-79 165-228 (298)
364 TIGR00157 ribosome small subun 98.9 1.3E-08 2.7E-13 75.8 9.2 83 103-191 36-120 (245)
365 COG1162 Predicted GTPases [Gen 98.9 5.6E-09 1.2E-13 78.4 7.2 57 23-79 166-228 (301)
366 TIGR03597 GTPase_YqeH ribosome 98.9 4E-08 8.7E-13 77.1 11.6 99 89-192 52-151 (360)
367 TIGR00064 ftsY signal recognit 98.9 1.9E-07 4.2E-12 70.4 14.7 153 20-187 71-261 (272)
368 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.3E-08 2.8E-13 77.5 8.0 57 22-79 162-225 (287)
369 KOG0096 GTPase Ran/TC4/GSP1 (n 98.8 1E-08 2.2E-13 71.2 6.3 151 20-193 9-168 (216)
370 PRK14974 cell division protein 98.8 4.2E-08 9.1E-13 75.8 10.4 147 21-187 140-323 (336)
371 PRK11537 putative GTP-binding 98.8 2.8E-07 6E-12 71.1 14.6 115 20-147 3-165 (318)
372 TIGR01425 SRP54_euk signal rec 98.8 1.1E-07 2.5E-12 75.4 12.8 118 21-147 100-254 (429)
373 PRK00098 GTPase RsgA; Reviewed 98.8 2.4E-08 5.2E-13 76.4 8.7 84 102-191 79-164 (298)
374 TIGR02475 CobW cobalamin biosy 98.8 5.7E-08 1.2E-12 75.6 10.4 128 20-160 3-201 (341)
375 KOG3905 Dynein light intermedi 98.8 2.8E-07 6.1E-12 69.5 13.5 58 132-192 222-288 (473)
376 cd00066 G-alpha G protein alph 98.8 3.7E-08 8.1E-13 76.0 9.1 115 66-193 160-310 (317)
377 KOG1424 Predicted GTP-binding 98.8 1E-08 2.2E-13 81.2 5.7 58 21-79 314-371 (562)
378 TIGR03348 VI_IcmF type VI secr 98.8 5.9E-08 1.3E-12 86.5 10.7 127 20-147 110-258 (1169)
379 KOG0464 Elongation factor G [T 98.8 1.7E-09 3.6E-14 83.8 0.9 115 20-147 36-169 (753)
380 KOG0465 Mitochondrial elongati 98.8 9.4E-09 2E-13 82.9 4.7 119 19-150 37-174 (721)
381 cd01854 YjeQ_engC YjeQ/EngC. 98.8 4E-08 8.7E-13 74.8 7.9 83 102-191 77-161 (287)
382 KOG2743 Cobalamin synthesis pr 98.7 3.7E-07 8E-12 68.1 12.0 139 16-162 52-241 (391)
383 PRK13796 GTPase YqeH; Provisio 98.7 3.5E-07 7.7E-12 71.9 11.3 94 98-193 63-158 (365)
384 PF00448 SRP54: SRP54-type pro 98.7 1.1E-07 2.4E-12 68.3 7.7 117 23-148 3-156 (196)
385 PRK12288 GTPase RsgA; Reviewed 98.7 3.1E-07 6.8E-12 71.5 10.3 87 102-192 119-206 (347)
386 KOG2485 Conserved ATP/GTP bind 98.6 2.4E-08 5.2E-13 74.7 3.2 63 18-80 140-209 (335)
387 KOG4423 GTP-binding protein-li 98.6 1.6E-09 3.5E-14 74.9 -2.9 156 19-193 23-193 (229)
388 KOG2484 GTPase [General functi 98.6 3.3E-08 7.1E-13 76.2 3.3 60 20-80 251-310 (435)
389 KOG1534 Putative transcription 98.6 2.7E-07 5.8E-12 65.6 7.5 125 67-196 98-253 (273)
390 PRK01889 GTPase RsgA; Reviewed 98.6 5E-07 1.1E-11 70.8 9.5 83 102-191 111-194 (356)
391 PRK14722 flhF flagellar biosyn 98.6 2.6E-07 5.5E-12 72.3 7.8 25 20-44 136-160 (374)
392 cd04178 Nucleostemin_like Nucl 98.6 8.6E-07 1.9E-11 62.4 9.2 56 105-160 1-58 (172)
393 COG3523 IcmF Type VI protein s 98.5 1.3E-06 2.9E-11 76.7 11.7 156 20-181 124-301 (1188)
394 PF05783 DLIC: Dynein light in 98.5 3.3E-06 7.2E-11 68.1 13.0 59 132-193 196-263 (472)
395 cd03114 ArgK-like The function 98.5 1.5E-06 3.2E-11 59.7 9.1 20 24-43 2-21 (148)
396 PF09547 Spore_IV_A: Stage IV 98.5 1.9E-06 4.2E-11 67.5 10.4 163 21-190 17-233 (492)
397 PRK00771 signal recognition pa 98.5 1.9E-06 4.1E-11 69.0 10.4 115 20-148 94-248 (437)
398 COG1618 Predicted nucleotide k 98.4 1.2E-05 2.5E-10 55.0 11.8 156 19-195 3-177 (179)
399 COG1419 FlhF Flagellar GTP-bin 98.4 6.1E-06 1.3E-10 64.6 11.8 117 21-148 203-354 (407)
400 PRK10867 signal recognition pa 98.4 3.1E-06 6.7E-11 67.7 10.3 23 20-42 99-121 (433)
401 PRK12727 flagellar biosynthesi 98.4 6.2E-06 1.3E-10 67.0 12.0 138 20-176 349-519 (559)
402 cd03115 SRP The signal recogni 98.4 3.8E-06 8.2E-11 59.2 9.1 73 66-148 82-155 (173)
403 PRK11889 flhF flagellar biosyn 98.4 3.3E-06 7.2E-11 66.2 9.1 118 21-148 241-393 (436)
404 cd02038 FleN-like FleN is a me 98.4 3.5E-06 7.6E-11 57.3 8.1 126 25-170 4-133 (139)
405 KOG2423 Nucleolar GTPase [Gene 98.4 1.6E-07 3.5E-12 72.5 1.7 60 18-78 304-363 (572)
406 KOG0082 G-protein alpha subuni 98.4 1.5E-05 3.2E-10 61.6 12.3 116 65-193 193-343 (354)
407 TIGR00959 ffh signal recogniti 98.3 8.4E-06 1.8E-10 65.2 11.2 73 66-147 182-254 (428)
408 COG3640 CooC CO dehydrogenase 98.3 1.4E-06 3.1E-11 63.0 5.7 44 102-145 154-198 (255)
409 PRK14721 flhF flagellar biosyn 98.3 5.5E-06 1.2E-10 65.9 9.1 24 20-43 190-213 (420)
410 KOG1707 Predicted Ras related/ 98.3 6.8E-06 1.5E-10 66.5 9.6 149 21-194 425-583 (625)
411 PRK12724 flagellar biosynthesi 98.3 5.9E-06 1.3E-10 65.5 8.7 120 21-148 223-375 (432)
412 PRK05703 flhF flagellar biosyn 98.3 1.4E-05 2.9E-10 64.2 10.8 142 21-182 221-396 (424)
413 PRK12726 flagellar biosynthesi 98.3 7.1E-06 1.5E-10 64.2 8.9 117 20-147 205-357 (407)
414 KOG3887 Predicted small GTPase 98.2 1.8E-05 4E-10 57.6 9.9 155 21-187 27-195 (347)
415 KOG2484 GTPase [General functi 98.2 1.3E-05 2.8E-10 62.3 9.2 71 91-161 134-206 (435)
416 PRK06995 flhF flagellar biosyn 98.2 2.4E-05 5.2E-10 63.4 11.1 23 22-44 257-279 (484)
417 PRK12723 flagellar biosynthesi 98.2 2.1E-05 4.6E-10 62.1 10.4 118 21-148 174-328 (388)
418 smart00010 small_GTPase Small 98.1 4.3E-06 9.4E-11 55.2 4.8 22 23-44 2-23 (124)
419 KOG0446 Vacuolar sorting prote 98.1 1.2E-06 2.6E-11 73.3 2.5 79 67-147 132-214 (657)
420 PRK14723 flhF flagellar biosyn 98.1 1.5E-05 3.2E-10 67.6 8.5 23 22-44 186-208 (767)
421 KOG1424 Predicted GTP-binding 98.1 1.9E-05 4.1E-10 63.2 8.1 80 92-178 163-244 (562)
422 KOG0469 Elongation factor 2 [T 98.1 1.3E-05 2.8E-10 64.1 7.0 131 19-162 17-183 (842)
423 KOG0780 Signal recognition par 98.1 3E-05 6.4E-10 60.2 8.5 23 20-42 100-122 (483)
424 PRK01889 GTPase RsgA; Reviewed 98.0 4.3E-06 9.3E-11 65.6 3.7 57 22-79 196-259 (356)
425 PRK06731 flhF flagellar biosyn 98.0 0.00023 4.9E-09 53.7 12.2 118 20-148 74-227 (270)
426 PRK13695 putative NTPase; Prov 98.0 6.7E-05 1.5E-09 52.9 8.7 74 103-193 96-172 (174)
427 COG1162 Predicted GTPases [Gen 98.0 0.0001 2.2E-09 55.8 9.7 84 104-192 80-165 (301)
428 PF00004 AAA: ATPase family as 98.0 5E-05 1.1E-09 50.7 7.4 21 24-44 1-21 (132)
429 COG0541 Ffh Signal recognition 98.0 0.00023 5.1E-09 56.2 11.7 26 18-43 97-122 (451)
430 COG1161 Predicted GTPases [Gen 97.9 9.9E-05 2.2E-09 57.2 9.2 89 91-187 22-110 (322)
431 cd00071 GMPK Guanosine monopho 97.8 7.2E-05 1.6E-09 50.7 6.5 21 24-44 2-22 (137)
432 PF13671 AAA_33: AAA domain; P 97.8 2.2E-05 4.7E-10 53.4 3.5 21 24-44 2-22 (143)
433 smart00275 G_alpha G protein a 97.8 0.00012 2.6E-09 57.3 7.9 115 66-193 183-333 (342)
434 KOG1533 Predicted GTPase [Gene 97.8 0.0003 6.4E-09 51.2 8.5 75 67-147 97-178 (290)
435 cd03111 CpaE_like This protein 97.7 0.00013 2.8E-09 47.1 6.3 100 24-141 2-106 (106)
436 KOG2423 Nucleolar GTPase [Gene 97.7 0.00038 8.3E-09 54.4 9.6 98 92-195 202-301 (572)
437 TIGR03263 guanyl_kin guanylate 97.7 0.00015 3.3E-09 51.3 6.8 22 23-44 3-24 (180)
438 TIGR03574 selen_PSTK L-seryl-t 97.7 0.00069 1.5E-08 50.7 10.5 21 24-44 2-22 (249)
439 PF13207 AAA_17: AAA domain; P 97.7 3.4E-05 7.4E-10 50.9 3.0 22 23-44 1-22 (121)
440 COG0703 AroK Shikimate kinase 97.7 2.9E-05 6.3E-10 54.1 2.6 24 21-44 2-25 (172)
441 PRK08118 topology modulation p 97.7 3.9E-05 8.6E-10 53.8 3.3 23 22-44 2-24 (167)
442 COG1116 TauB ABC-type nitrate/ 97.7 3.5E-05 7.6E-10 56.5 3.0 24 22-45 30-53 (248)
443 COG0552 FtsY Signal recognitio 97.7 0.00019 4.2E-09 54.9 6.9 153 19-187 137-328 (340)
444 cd02036 MinD Bacterial cell di 97.7 0.0011 2.4E-08 46.7 10.4 65 68-147 64-129 (179)
445 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00046 9.9E-09 38.8 6.6 41 103-143 13-58 (58)
446 PF13555 AAA_29: P-loop contai 97.6 5.8E-05 1.3E-09 43.4 2.9 21 23-43 25-45 (62)
447 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00031 6.8E-09 44.0 6.7 69 24-115 2-70 (99)
448 COG1136 SalX ABC-type antimicr 97.6 4.5E-05 9.7E-10 55.6 3.0 25 21-45 31-55 (226)
449 COG3840 ThiQ ABC-type thiamine 97.6 5.6E-05 1.2E-09 53.0 2.9 24 20-43 24-47 (231)
450 PRK07261 topology modulation p 97.6 6.4E-05 1.4E-09 52.9 3.2 22 23-44 2-23 (171)
451 COG1126 GlnQ ABC-type polar am 97.6 6.3E-05 1.4E-09 54.1 3.0 25 20-44 27-51 (240)
452 PRK08727 hypothetical protein; 97.6 0.0012 2.6E-08 48.9 9.9 23 22-44 42-64 (233)
453 PRK14737 gmk guanylate kinase; 97.6 0.00011 2.3E-09 52.5 4.1 38 21-59 4-41 (186)
454 PRK14738 gmk guanylate kinase; 97.6 0.0001 2.2E-09 53.5 4.1 25 20-44 12-36 (206)
455 PF03205 MobB: Molybdopterin g 97.5 7.3E-05 1.6E-09 50.8 2.7 23 22-44 1-23 (140)
456 PF07015 VirC1: VirC1 protein; 97.5 0.0016 3.4E-08 47.7 9.5 98 67-187 84-187 (231)
457 COG0563 Adk Adenylate kinase a 97.5 9.4E-05 2E-09 52.4 3.1 22 23-44 2-23 (178)
458 PRK04195 replication factor C 97.5 0.0025 5.4E-08 52.3 11.8 24 21-44 39-62 (482)
459 PF00005 ABC_tran: ABC transpo 97.5 9.3E-05 2E-09 49.9 3.0 24 22-45 12-35 (137)
460 PF05621 TniB: Bacterial TniB 97.5 0.00082 1.8E-08 51.1 8.2 50 17-77 57-106 (302)
461 cd02019 NK Nucleoside/nucleoti 97.5 0.00012 2.7E-09 43.3 2.9 21 24-44 2-22 (69)
462 PRK10751 molybdopterin-guanine 97.5 0.00015 3.2E-09 50.9 3.6 25 20-44 5-29 (173)
463 TIGR01313 therm_gnt_kin carboh 97.5 0.0024 5.3E-08 44.4 9.8 21 24-44 1-21 (163)
464 PRK14530 adenylate kinase; Pro 97.4 0.00015 3.2E-09 53.0 3.4 24 21-44 3-26 (215)
465 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00015 3.3E-09 51.5 3.3 25 20-44 2-26 (188)
466 COG3839 MalK ABC-type sugar tr 97.4 0.00013 2.8E-09 56.5 3.0 24 22-45 30-53 (338)
467 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00015 3.3E-09 46.6 2.7 21 22-42 16-36 (107)
468 PF13521 AAA_28: AAA domain; P 97.4 0.0001 2.2E-09 51.4 2.1 22 23-44 1-22 (163)
469 PRK10078 ribose 1,5-bisphospho 97.4 0.00016 3.5E-09 51.6 3.1 22 23-44 4-25 (186)
470 PRK05480 uridine/cytidine kina 97.4 0.00019 4E-09 52.2 3.4 26 19-44 4-29 (209)
471 PRK05416 glmZ(sRNA)-inactivati 97.4 0.0019 4.2E-08 49.2 8.9 23 21-43 6-28 (288)
472 TIGR00235 udk uridine kinase. 97.4 0.00016 3.5E-09 52.5 3.0 25 20-44 5-29 (207)
473 TIGR02322 phosphon_PhnN phosph 97.4 0.00016 3.5E-09 51.1 3.0 22 23-44 3-24 (179)
474 COG0194 Gmk Guanylate kinase [ 97.4 8.9E-05 1.9E-09 52.1 1.5 25 21-45 4-28 (191)
475 COG4525 TauB ABC-type taurine 97.3 0.00016 3.5E-09 51.3 2.8 23 22-44 32-54 (259)
476 KOG2485 Conserved ATP/GTP bind 97.3 0.0019 4E-08 49.1 8.5 68 91-160 34-101 (335)
477 smart00382 AAA ATPases associa 97.3 0.00024 5.1E-09 47.5 3.5 23 22-44 3-25 (148)
478 COG1117 PstB ABC-type phosphat 97.3 0.00026 5.6E-09 51.0 3.5 25 19-43 31-55 (253)
479 cd01130 VirB11-like_ATPase Typ 97.3 0.0002 4.4E-09 51.1 3.1 24 21-44 25-48 (186)
480 COG3638 ABC-type phosphate/pho 97.3 0.0002 4.2E-09 52.3 2.9 24 21-44 30-53 (258)
481 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.1E-09 47.6 2.7 21 24-44 1-21 (129)
482 cd03238 ABC_UvrA The excision 97.3 0.00022 4.8E-09 50.4 3.1 24 20-43 20-43 (176)
483 PRK06217 hypothetical protein; 97.3 0.00023 5E-09 50.6 3.2 23 22-44 2-24 (183)
484 PF02263 GBP: Guanylate-bindin 97.3 0.0008 1.7E-08 50.6 6.1 62 18-79 18-86 (260)
485 KOG3347 Predicted nucleotide k 97.3 0.00024 5.2E-09 48.1 2.7 26 19-44 5-30 (176)
486 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00025 5.5E-09 50.2 2.9 25 20-44 24-48 (177)
487 PRK03839 putative kinase; Prov 97.3 0.00027 5.8E-09 50.1 3.1 22 23-44 2-23 (180)
488 PRK00300 gmk guanylate kinase; 97.2 0.00035 7.6E-09 50.5 3.7 25 20-44 4-28 (205)
489 PF08433 KTI12: Chromatin asso 97.2 0.0026 5.7E-08 48.1 8.4 148 22-191 2-171 (270)
490 cd01131 PilT Pilus retraction 97.2 0.00024 5.2E-09 51.2 2.7 22 23-44 3-24 (198)
491 cd03110 Fer4_NifH_child This p 97.2 0.0037 8.1E-08 44.1 8.8 66 66-146 92-157 (179)
492 cd02023 UMPK Uridine monophosp 97.2 0.00024 5.2E-09 51.2 2.7 21 24-44 2-22 (198)
493 cd03225 ABC_cobalt_CbiO_domain 97.2 0.0003 6.5E-09 51.2 3.2 24 21-44 27-50 (211)
494 PRK13949 shikimate kinase; Pro 97.2 0.0003 6.5E-09 49.4 3.1 23 22-44 2-24 (169)
495 COG1341 Predicted GTPase or GT 97.2 0.0021 4.5E-08 50.5 7.8 26 19-44 71-96 (398)
496 TIGR00960 3a0501s02 Type II (G 97.2 0.00031 6.7E-09 51.3 3.2 25 20-44 28-52 (216)
497 PRK14531 adenylate kinase; Pro 97.2 0.00036 7.7E-09 49.7 3.4 24 21-44 2-25 (183)
498 cd03261 ABC_Org_Solvent_Resist 97.2 0.00031 6.7E-09 52.0 3.2 25 20-44 25-49 (235)
499 PRK08233 hypothetical protein; 97.2 0.00033 7.2E-09 49.5 3.2 23 22-44 4-26 (182)
500 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00032 6.9E-09 51.3 3.2 25 20-44 29-53 (218)
No 1
>COG0218 Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=201.23 Aligned_cols=194 Identities=43% Similarity=0.618 Sum_probs=175.0
Q ss_pred ccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccc
Q 029158 3 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 82 (198)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~ 82 (198)
+.+|+.++....+.|++..+.|+++|.+|+|||||||+|+++..++.++..||.|+.+.++..+..+.++|.||+|.+..
T Consensus 6 ~~~f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv 85 (200)
T COG0218 6 KAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKV 85 (200)
T ss_pred ccEEEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccC
Confidence 57899999999999999999999999999999999999999877899999999999999999988899999999999988
Q ss_pred hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 029158 83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 162 (198)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 162 (198)
.....+.|..++.+|+.......++++++|+.+++...|.++++++...+.|+++|+||+|.....+..+....+.+.+.
T Consensus 86 ~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 86 PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 88999999999999999998899999999999999999999999999999999999999999998877777777776554
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
.......-++..|+.++.|++++.+.|.+.+...
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 4332222288999999999999999999887653
No 2
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=100.00 E-value=3.1e-31 Score=188.45 Aligned_cols=178 Identities=41% Similarity=0.635 Sum_probs=146.2
Q ss_pred ceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchh
Q 029158 5 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE 84 (198)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~ 84 (198)
+|++++.+..+.|+...++|+++|.+|+|||||+++|++........+.+++|.+..++..+.++.+|||||++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~ 81 (179)
T TIGR03598 2 EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSK 81 (179)
T ss_pred EEEeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCCh
Confidence 68999999999999999999999999999999999999874355667778888887766656689999999987654444
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158 85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 164 (198)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 164 (198)
.....|..+...|+.....++++++|+|+++++...+.+++..+...+.|+++|+||+|+..+.+.+...+.+++.+...
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 82 EEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred hHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 45566777777788776678999999999988887777778888877899999999999988776666677777776653
Q ss_pred cCCCCCcEEeccCCCCChH
Q 029158 165 NSLVQPVMMVSSKSGAGIR 183 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~ 183 (198)
....+++++||++|+|++
T Consensus 162 -~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 -ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred -cCCCceEEEECCCCCCCC
Confidence 234589999999999974
No 3
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.97 E-value=1.2e-29 Score=182.72 Aligned_cols=190 Identities=42% Similarity=0.624 Sum_probs=152.2
Q ss_pred ccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccc
Q 029158 3 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 82 (198)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~ 82 (198)
+++|.++....+..+....++|+++|.+|+|||||+++|++.+......+.+++|+...+...+.++.+|||||+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~ 85 (196)
T PRK00454 6 NAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKV 85 (196)
T ss_pred HHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCC
Confidence 45677778888888888999999999999999999999999744566777788888877766678899999999865444
Q ss_pred hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 029158 83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 162 (198)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 162 (198)
.....+.+..+...++.....++++++++|++.+....+.++.+.+...+.|+++++||+|+.+..+.+...+.+++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~ 165 (196)
T PRK00454 86 SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALK 165 (196)
T ss_pred CchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 44445666777778888777778899999988766666666677777778999999999999887666655566666554
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.. ..+++++||++++|+++++++|.+.+..
T Consensus 166 ~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 166 FG---DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred hc---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 32 4789999999999999999999988764
No 4
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.96 E-value=2.9e-29 Score=171.61 Aligned_cols=153 Identities=29% Similarity=0.344 Sum_probs=111.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|.||+|||||+|+|++.+ ..+++++++|.+... ...+..+.++||||+.+-...... +....+++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e----e~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE----ERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH----HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH----HHHHHHHH
Confidence 379999999999999999999985 778999999988653 334688999999996432111111 23333444
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
. ....|++++|+|+++ .+.+.++..++.+.+.|+++|+||+|+..........+.+.+.+ ++|++++||++
T Consensus 75 ~-~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------g~pvi~~sa~~ 145 (156)
T PF02421_consen 75 L-SEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------GVPVIPVSART 145 (156)
T ss_dssp H-HTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------TS-EEEEBTTT
T ss_pred h-hcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------CCCEEEEEeCC
Confidence 3 245899999999986 45567778888888999999999999976554333345555554 48999999999
Q ss_pred CCChHHHHHHH
Q 029158 179 GAGIRSLRTVL 189 (198)
Q Consensus 179 ~~gi~~l~~~i 189 (198)
++|+++|++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999876
No 5
>COG1159 Era GTPase [General function prediction only]
Probab=99.96 E-value=4.9e-28 Score=177.72 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=133.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
..-.|+++|.||+|||||+|+|+++ +++.+++.+.||+... +...+.++.|+||||+... . +...+.+...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p--k---~~l~~~m~~~ 78 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP--K---HALGELMNKA 78 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc--c---hHHHHHHHHH
Confidence 3456999999999999999999999 8999999999998632 3334789999999998664 2 2333666777
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
.......+|+++||+|+.+++...+..+++.+...+.|+++++||+|...+.. +....+.+.... ....++++|
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~-----~f~~ivpiS 153 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL-----PFKEIVPIS 153 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhC-----CcceEEEee
Confidence 77788889999999999999999898899999887789999999999998776 333333333221 235899999
Q ss_pred cCCCCChHHHHHHHHHhhcc
Q 029158 176 SKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~~~~ 195 (198)
|++|.|++.|.+.+..+++.
T Consensus 154 A~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccccCCHHHHHHHHHHhCCC
Confidence 99999999999999998864
No 6
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.95 E-value=9.1e-27 Score=175.38 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=115.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
+|+++|.+|+|||||+|+|++. ....+++.++||+... ....+.++.++||||+.+.. .. ....+......
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~---l~~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HS---LNRLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--ch---HHHHHHHHHHH
Confidence 6899999999999999999998 5667788888887632 22235679999999986531 11 11223333444
Q ss_pred cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
....+|++++|+|++..... +..++..+...+.|+++|+||+|+............+... . ...+++++||++|
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~-~~~~v~~iSA~~g 149 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGD-GEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAIL----E-DFKDIVPISALTG 149 (270)
T ss_pred HHhhCCEEEEEEECCCCCch-HHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhh----c-CCCceEEEecCCC
Confidence 44569999999999875333 2556777777789999999999998544332222222211 1 1247999999999
Q ss_pred CChHHHHHHHHHhhcc
Q 029158 180 AGIRSLRTVLSKIARF 195 (198)
Q Consensus 180 ~gi~~l~~~i~~~~~~ 195 (198)
.|+++++++|.+.++.
T Consensus 150 ~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999987754
No 7
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.95 E-value=6.9e-26 Score=158.92 Aligned_cols=170 Identities=45% Similarity=0.715 Sum_probs=133.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 102 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
.|+++|.+|+|||||++.+++.......++..++|........+..+.++||||++.........+.+......|+....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 37999999999999999999554556667777777776666666799999999998765555555666777778888777
Q ss_pred ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158 103 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi 182 (198)
.++++++++|..........++++.+...+.|+++|+||+|+..+.+.......+...+.. .....+++++||+++.|+
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceEEEecCCCCCH
Confidence 7899999999987666666677788887789999999999998776655555555544432 233578999999999999
Q ss_pred HHHHHHHHHhh
Q 029158 183 RSLRTVLSKIA 193 (198)
Q Consensus 183 ~~l~~~i~~~~ 193 (198)
++++++|.+++
T Consensus 160 ~~l~~~l~~~~ 170 (170)
T cd01876 160 DELRALIEKWL 170 (170)
T ss_pred HHHHHHHHHhC
Confidence 99999998763
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.95 E-value=9.2e-27 Score=179.83 Aligned_cols=158 Identities=25% Similarity=0.372 Sum_probs=127.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
+.|+++|.||+|||||+|+|++. ..+.+++.+|+|+|..+.. .+..+.++||+|+..... + +....+..+.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~---~l~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-D---ELQELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-h---HHHHHHHHHHH
Confidence 78999999999999999999999 7899999999999965433 367799999999864321 1 22244555666
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
.....||+++||+|+.+|+...|.++.+.+++.++|+++|+||+|-...+. ...+. .. .....++++||-+
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~------~~~ef-ys--lG~g~~~~ISA~H 149 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE------LAYEF-YS--LGFGEPVPISAEH 149 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh------hHHHH-Hh--cCCCCceEeehhh
Confidence 666679999999999999999999999999987899999999999874321 11111 11 2246789999999
Q ss_pred CCChHHHHHHHHHhh
Q 029158 179 GAGIRSLRTVLSKIA 193 (198)
Q Consensus 179 ~~gi~~l~~~i~~~~ 193 (198)
|.|+.+|.+++.+.+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999987
No 9
>PRK04213 GTP-binding protein; Provisional
Probab=99.95 E-value=1.3e-25 Score=162.37 Aligned_cols=173 Identities=29% Similarity=0.460 Sum_probs=116.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchh-HHHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVKE 96 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~~~~~~~~~~ 96 (198)
+...++|+++|.+|+|||||+++|++.. ...+..+++|........+ ++.+|||||++...... ...+.+......
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 3456899999999999999999999874 3355566777655443333 79999999975432111 123445555556
Q ss_pred HHh-cccccceEEEEEeCCCCCC-----------cCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158 97 YVS-TRVSLKRVCLLIDTKWGVK-----------PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 164 (198)
Q Consensus 97 ~~~-~~~~~d~vi~v~d~~~~~~-----------~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 164 (198)
++. ....++++++|+|++.... ..+.+++..+...++|+++|+||+|+.... .+..+.+.+.+...
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~ 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLY 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCC
Confidence 654 4566899999999875211 112445566666689999999999997644 22223333333210
Q ss_pred ---cCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 165 ---NSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 165 ---~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
.....+++++||++| |+++++++|.+.+...
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 011236899999999 9999999999877653
No 10
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=1.6e-25 Score=156.70 Aligned_cols=155 Identities=28% Similarity=0.383 Sum_probs=106.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceee--cCCCCceeEEEEEE---e-CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~t~~~~~~~---~-~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.|+++|.+|+|||||+++|.+.. .... ...+++|.+..+.. . +..+.+|||||. ..+...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~-------------~~~~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE-TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH-------------EKFIKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc-cccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh-------------HHHHHH
Confidence 58999999999999999999752 1111 11234555443221 1 568999999996 222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
+......+|++++|+|+++++.....+.+..+...+. |+++|+||+|+..........+.+.+.+........+++++|
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 3344455999999999987655555555555554454 999999999998754444444555555543222357899999
Q ss_pred cCCCCChHHHHHHHHH
Q 029158 176 SKSGAGIRSLRTVLSK 191 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~ 191 (198)
|++++|++++++++.+
T Consensus 148 a~~~~~v~~l~~~l~~ 163 (164)
T cd04171 148 AVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999998864
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=1.1e-25 Score=174.04 Aligned_cols=164 Identities=22% Similarity=0.214 Sum_probs=118.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+|+|++. .+..+++.+.+|++.. +...+.++.+|||||+.+.... ....+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-----l~~~~~r~ 124 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-----LEKAMVRC 124 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-----HHHHHHHH
Confidence 3458999999999999999999988 5566677777776532 2233678999999998543211 11233344
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
.......+|++++|+|+..++...+..+++.+...+.|.++|+||+|+... ... .+.+.+... ....+++++||
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~----~~~~~l~~~-~~~~~i~~iSA 198 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLN----DIKAFLTEN-HPDSLLFPISA 198 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHH----HHHHHHHhc-CCCcEEEEEec
Confidence 444445699999999998877766667777777777889999999999753 222 222222211 22367999999
Q ss_pred CCCCChHHHHHHHHHhhcc
Q 029158 177 KSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~~~ 195 (198)
++|.|+++++++|.+.++.
T Consensus 199 ktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred cCccCHHHHHHHHHHhCCC
Confidence 9999999999999988764
No 12
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.94 E-value=1.8e-25 Score=160.63 Aligned_cols=161 Identities=23% Similarity=0.340 Sum_probs=113.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcc-----ceeecCCCCceeEEEE-----E------------EeCCceEEEeCCCCcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWG-----VVRTSDKPGLTQTINF-----F------------KLGTKLCLVDLPGYGF 79 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~-----~~~~~~~~~~t~~~~~-----~------------~~~~~~~iiDtpG~~~ 79 (198)
.+|+++|.+|+|||||+++|++... .......+++|.+..+ . ..+..+.+|||||+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-- 78 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH-- 78 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc--
Confidence 3699999999999999999997310 0112223445554331 1 11568999999997
Q ss_pred ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH
Q 029158 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 159 (198)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 159 (198)
..+.+.++.....+|++++|+|+..+....+.+.+......+.|+++|+||+|+......+...+.+++
T Consensus 79 -----------~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 79 -----------ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred -----------HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 344556666666789999999999876555555444455557899999999999866554444444544
Q ss_pred HHHh----ccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 160 SLKA----NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 160 ~~~~----~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+.. ......+++++||++|+|+++|++++.+....
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 3322 12335789999999999999999999987654
No 13
>PRK00089 era GTPase Era; Reviewed
Probab=99.94 E-value=3e-25 Score=169.19 Aligned_cols=164 Identities=24% Similarity=0.287 Sum_probs=120.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE-eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
....|+++|.+|+|||||+|+|++. .+..+++.+.||+... +.. .+.++.++||||+.+.. .... ..+...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~---~~~~~~ 77 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALN---RAMNKA 77 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch--hHHH---HHHHHH
Confidence 3456999999999999999999998 6677777787776543 222 34789999999986532 1111 222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC-CcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
.......+|++++|+|+++.+...+..+++.+...+.|+++|+||+|+. .........+.+.+. ....+++++|
T Consensus 78 ~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~-----~~~~~i~~iS 152 (292)
T PRK00089 78 AWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSEL-----MDFAEIVPIS 152 (292)
T ss_pred HHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh-----CCCCeEEEec
Confidence 3344455999999999998767777777777776679999999999998 434444444444332 1246899999
Q ss_pred cCCCCChHHHHHHHHHhhc
Q 029158 176 SKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~~~ 194 (198)
|+++.|++++++++.+.++
T Consensus 153 A~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 9999999999999998875
No 14
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=2e-25 Score=159.80 Aligned_cols=161 Identities=27% Similarity=0.452 Sum_probs=120.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccce-e---------------ecCCCCceeE---EEEE--EeCCceEEEeCCCCc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-R---------------TSDKPGLTQT---INFF--KLGTKLCLVDLPGYG 78 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~-~---------------~~~~~~~t~~---~~~~--~~~~~~~iiDtpG~~ 78 (198)
..++|+++|+.++|||||+++|+...... . .....+.|.. ..+. .....+.++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~- 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH- 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc-
Confidence 35689999999999999999999642100 0 0001122322 2344 45678999999997
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 158 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 158 (198)
.++..+.......+|++++|+|+..++.....+.+..+...+.|+++|+||+|+. ..+..+..+++.
T Consensus 81 ------------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~ 147 (188)
T PF00009_consen 81 ------------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIK 147 (188)
T ss_dssp ------------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHH
T ss_pred ------------cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHH
Confidence 4556666677778999999999999988888999999999999999999999999 555566666666
Q ss_pred HHH-HhccC---CCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 159 ESL-KANNS---LVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 159 ~~~-~~~~~---~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+.+ ..... ...|++++||.+|+|+++|++.|.++++
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 444 22222 2478999999999999999999998875
No 15
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=3.1e-25 Score=174.52 Aligned_cols=178 Identities=16% Similarity=0.198 Sum_probs=125.6
Q ss_pred CccceeeccCCcCCCCCCCCC--------------eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--
Q 029158 2 NKLEFFAAAKVSSSFPAPDLP--------------EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-- 65 (198)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~--------------~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-- 65 (198)
.+.+|.++.......+....+ .|+++|.||+|||||+++|++.+ ..+++++.||....+...
T Consensus 125 gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~ 202 (424)
T PRK12297 125 GNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVET 202 (424)
T ss_pred CchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEE
Confidence 355666666666666666666 99999999999999999999874 557789999987664432
Q ss_pred --CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC----CCcCcHHHHHHHHh-----hCCc
Q 029158 66 --GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG----VKPRDHELISLMER-----SQTK 134 (198)
Q Consensus 66 --~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~-----~~~p 134 (198)
+..+.++||||+.+..... ..+...|+.....++++++|+|++.. +......+.+.+.. .++|
T Consensus 203 ~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP 276 (424)
T PRK12297 203 DDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP 276 (424)
T ss_pred eCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc
Confidence 5789999999986543211 23445566666679999999999752 11112234444443 3689
Q ss_pred EEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 135 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 135 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
+++|+||+|+.... +..+.+.+.+ ..+++++||++++|+++|+++|.+.+...
T Consensus 277 ~IVV~NK~DL~~~~---e~l~~l~~~l------~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 277 QIVVANKMDLPEAE---ENLEEFKEKL------GPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred EEEEEeCCCCcCCH---HHHHHHHHHh------CCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999985432 1122232222 15799999999999999999998877543
No 16
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.3e-25 Score=155.80 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=104.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
|+|+++|.+|+|||||+++|++.. ....+++++|....... .+.++.+|||||+.+..... ...+........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE--RNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC--CchHHHHHHHHH
Confidence 689999999999999999999974 23445566676655433 24689999999985421111 001111111111
Q ss_pred hcccccceEEEEEeCCCCCCc---CcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKP---RDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
. ..+|++++|+|++..... ...+++..+... +.|+++|+||+|+.......+ .++. .. ....++++
T Consensus 77 ~--~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~-~~--~~~~~~~~ 147 (168)
T cd01897 77 A--HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEE-EE--LEGEEVLK 147 (168)
T ss_pred H--hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HHHh-hh--hccCceEE
Confidence 1 125889999999864321 123455556544 799999999999987554433 1111 11 12578999
Q ss_pred eccCCCCChHHHHHHHHHhh
Q 029158 174 VSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+||++|+|++++++++.+.+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 148 ISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred EEecccCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 17
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.94 E-value=5.1e-25 Score=152.95 Aligned_cols=153 Identities=23% Similarity=0.324 Sum_probs=110.7
Q ss_pred EEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158 25 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 101 (198)
Q Consensus 25 ~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (198)
+++|.+|+|||||+++|++. ......+.+++|.+..... .+..+.+|||||+.+... .....+...+....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~ 74 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-----GISKEIREQAELAI 74 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-----HHHHHHHHHHHHHH
Confidence 47899999999999999987 4455667777776544322 357799999999865321 11122222333334
Q ss_pred cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g 181 (198)
..+|++++|+|+.++....+.++.+.+...+.|+++|+||+|+...... ...+... ...+++++|++++.|
T Consensus 75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-------~~~~~~~--~~~~~~~~Sa~~~~g 145 (157)
T cd01894 75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-------AAEFYSL--GFGEPIPISAEHGRG 145 (157)
T ss_pred HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-------HHHHHhc--CCCCeEEEecccCCC
Confidence 4589999999998877777777777787778999999999999875433 1111111 123789999999999
Q ss_pred hHHHHHHHHHh
Q 029158 182 IRSLRTVLSKI 192 (198)
Q Consensus 182 i~~l~~~i~~~ 192 (198)
+++++++|.+.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=173.49 Aligned_cols=169 Identities=27% Similarity=0.338 Sum_probs=133.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.|++|||||+|+|+++ ....+++.++||++. .+...+..+.++||+|+.....-.+..+ ..-...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E--~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVE--KYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceE--EEeehh
Confidence 5789999999999999999999999 568899999999884 3555588899999999844211111000 011122
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc--HHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
-++....+|.+++|+|+.+++.+++......+.+.+.++++|+||||+... ...++....+...+.... ..|++++
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~--~a~i~~i 331 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLD--FAPIVFI 331 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcccc--CCeEEEE
Confidence 333444589999999999999999999999999999999999999999886 455666677777655433 6899999
Q ss_pred ccCCCCChHHHHHHHHHhh
Q 029158 175 SSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~ 193 (198)
||++|.|++++++.+.+..
T Consensus 332 SA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 9999999999999988754
No 19
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.93 E-value=2.2e-24 Score=152.01 Aligned_cols=167 Identities=27% Similarity=0.308 Sum_probs=116.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.++|+++|.+|+|||||+++|++. ......+.++++.... +...+.++.+|||||+.+........+.+. ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~--~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS--VLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH--HHHH
Confidence 568999999999999999999987 3344455566655432 223456799999999865422111111111 1122
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc--HHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
+.....+|++++|+|+..+.......++..+...+.|+++++||+|+... ...+...+.+++.+.. ....+++++|
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~S 156 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPF--LDYAPIVFIS 156 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhccc--ccCCceEEEe
Confidence 23334589999999999877766666677776678999999999999876 3444445555544332 1247899999
Q ss_pred cCCCCChHHHHHHHHHh
Q 029158 176 SKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~ 192 (198)
|++++|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 20
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.93 E-value=2.9e-25 Score=172.01 Aligned_cols=158 Identities=25% Similarity=0.280 Sum_probs=123.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+++++|.||+|||||+|+|++. ..+.+++.+|||+|+-..+ .+.++.++||+|+.++...-+ ..-++..
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE-----~iGIeRs 290 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVE-----RIGIERA 290 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHH-----HHHHHHH
Confidence 468999999999999999999998 7899999999999975333 378999999999976532221 1113334
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
.+....||+++||+|+++.+...+...+. ....+.|+++|+||.|+..+...... ......+++.+|++
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~----------~~~~~~~~i~iSa~ 359 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE----------KLANGDAIISISAK 359 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh----------hccCCCceEEEEec
Confidence 44445599999999999987788877777 44557999999999999986542211 01223579999999
Q ss_pred CCCChHHHHHHHHHhhcc
Q 029158 178 SGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 178 ~~~gi~~l~~~i~~~~~~ 195 (198)
+++|+++|.+.|...+..
T Consensus 360 t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 360 TGEGLDALREAIKQLFGK 377 (454)
T ss_pred CccCHHHHHHHHHHHHhh
Confidence 999999999999987654
No 21
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=1.3e-24 Score=152.75 Aligned_cols=157 Identities=22% Similarity=0.295 Sum_probs=106.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE------eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
|.|+++|.+|+|||||+++|.+.. .. ....+++|....... .+..+.+|||||... +..+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~-~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN-VA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc-cc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHHH
Confidence 569999999999999999999873 22 222334554433111 246799999999622 112222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh---ccCCCCCcE
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVM 172 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~v~ 172 (198)
.++ ..+|++++|+|++++......+.+..+...++|+++|+||+|+..... +.....+.+.... ......+++
T Consensus 69 ~~~---~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01887 69 RGA---SLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIV 144 (168)
T ss_pred HHH---hhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEE
Confidence 222 348999999999886555555566667777899999999999975421 1222222221111 122357899
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|+|+++++++|.++..
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 145 PTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred EeecccCCCHHHHHHHHHHhhh
Confidence 9999999999999999998764
No 22
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=2.1e-24 Score=172.91 Aligned_cols=170 Identities=25% Similarity=0.293 Sum_probs=127.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+|||||+|+|++. .....++.+++|.+.. +...+..+.++||||+..........+.+. ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~ 247 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VI 247 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HH
Confidence 35689999999999999999999987 4566778888888753 333467899999999855322221111111 12
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
..+.....+|++++|+|+..+....+..++..+...++|+++|+||+|+.+.....+..+.+...+... ...|++++|
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~--~~~~i~~~S 325 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFL--DYAPIVFIS 325 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccc--cCCCEEEEe
Confidence 223344558999999999998888888888888888899999999999986655555555555544322 358999999
Q ss_pred cCCCCChHHHHHHHHHhh
Q 029158 176 SKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~~ 193 (198)
|++|.|++++++.+.+..
T Consensus 326 A~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987754
No 23
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.93 E-value=1.6e-24 Score=173.38 Aligned_cols=171 Identities=24% Similarity=0.292 Sum_probs=124.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+|||||+|+|++. ......+.+++|.+.. +...+..+.+|||||+..........+.+. ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VL 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HH
Confidence 34578999999999999999999987 4455677888887643 323456899999999854322111111111 11
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC-CcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
..+.....+|++++|+|+.++....+.+++..+...++|+++|+||+|+. .....++....+.+.+... ...+++++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~ 324 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL--DFAPIVFI 324 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC--CCCceEEE
Confidence 22233445999999999999888888888888887789999999999998 4444445555555443322 24799999
Q ss_pred ccCCCCChHHHHHHHHHhhc
Q 029158 175 SSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (198)
||++|.|++++++++.+.+.
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887654
No 24
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.93 E-value=3e-24 Score=150.24 Aligned_cols=161 Identities=26% Similarity=0.308 Sum_probs=113.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|++|+|||||++++++. ......+...++.... ....+..+.+|||||+.+..... .+. +....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~---~~~~~ 76 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GER---MVKAA 76 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHH---HHHHH
Confidence 467999999999999999999987 5555555555554432 12224679999999986542211 111 22222
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC-cHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
......+|++++++|+..........+...+...+.|+++|+||+|+.. .....+....++.. ....+++++|+
T Consensus 77 ~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~ 151 (168)
T cd04163 77 WSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKEL-----GPFAEIFPISA 151 (168)
T ss_pred HHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhc-----cCCCceEEEEe
Confidence 2333458999999999987566666777777777899999999999983 44444444444332 22468999999
Q ss_pred CCCCChHHHHHHHHHh
Q 029158 177 KSGAGIRSLRTVLSKI 192 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~ 192 (198)
+++.|+++++++|.+.
T Consensus 152 ~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 152 LKGENVDELLEEIVKY 167 (168)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999875
No 25
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=1.2e-24 Score=170.20 Aligned_cols=161 Identities=22% Similarity=0.257 Sum_probs=112.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---C-CceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.|+++|.||+|||||+|+|++.. ..+++++.||+....... + ..+.++||||+.+..... ..+...++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l 232 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG------AGLGIRFL 232 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch------hhHHHHHH
Confidence 89999999999999999999874 578899999987553332 2 359999999986643221 11223344
Q ss_pred hcccccceEEEEEeCCC----CCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 99 STRVSLKRVCLLIDTKW----GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~----~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
.....+|++++|+|++. ........+++.+... +.|+++|+||+|+....+..+....+.+.. ....
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~----~~~~ 308 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL----GWEG 308 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh----CCCC
Confidence 45556999999999872 1112223445555442 589999999999986554433333333221 1124
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+++++||++++|+++++++|.+.+..
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 78999999999999999999987753
No 26
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=5.5e-25 Score=154.93 Aligned_cols=158 Identities=21% Similarity=0.252 Sum_probs=103.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCC-ceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~-~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.|+++|.+|+|||||+++|.+.. ..+...+++|..... ...+. ++.+|||||+.+..... ..+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence 58999999999999999999864 244555556654322 12234 89999999975321111 12223344
Q ss_pred hcccccceEEEEEeCCCC-CCcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 99 STRVSLKRVCLLIDTKWG-VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~-~~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.....+|++++|+|+++. -.... ..+.+.+.. .+.|+++|+||+|+.......+..... .... ...++
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~--~~~~~ 148 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKEL---LKEL--WGKPV 148 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHH---HhhC--CCCCE
Confidence 444458999999999864 11111 233444433 258999999999997765443322222 2211 24689
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++||+++.|+++++++|.+.+
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 149 FPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhhC
Confidence 9999999999999999998753
No 27
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=2.7e-24 Score=173.28 Aligned_cols=170 Identities=21% Similarity=0.219 Sum_probs=120.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
..++|+++|.+|+|||||+|+|++. .....++.+++|.+.. +...+..+.+|||||+..........+.+..+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~- 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT- 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH-
Confidence 4689999999999999999999998 3445677888887642 3334667899999997432211111111111110
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
......+|++++|+|++++....+..++..+...++|+|+|+||+|+............+.+.+.. ....+++++||
T Consensus 288 -~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~~~SA 364 (472)
T PRK03003 288 -HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQ--VPWAPRVNISA 364 (472)
T ss_pred -HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhccc--CCCCCEEEEEC
Confidence 112234999999999999888778888888877789999999999998644333333333333322 22478999999
Q ss_pred CCCCChHHHHHHHHHhhc
Q 029158 177 KSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~~ 194 (198)
++|.|++++++.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 28
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=5.1e-24 Score=154.15 Aligned_cols=160 Identities=22% Similarity=0.275 Sum_probs=111.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEE-----EE-------------------------EeC-----
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTIN-----FF-------------------------KLG----- 66 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~-----~~-------------------------~~~----- 66 (198)
+|+++|+.|+|||||+.+|.+.. .........+.+.... +. ..+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999997651 0000111111111111 00 002
Q ss_pred -CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcCcHHHHHHHHhhCC-cEEEEEeccC
Q 029158 67 -TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTD 143 (198)
Q Consensus 67 -~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~-p~iiv~nK~D 143 (198)
..+.||||||+ ..+...++.....+|++++|+|+..+ ......+.+..+...+. |+++|+||+|
T Consensus 82 ~~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence 57899999996 45666777777789999999999874 34444556665655554 7899999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+..........+.+++.+........+++++||++|+|+++++++|.+.++.
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 9876555555566666554433345789999999999999999999987654
No 29
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.93 E-value=1.7e-24 Score=154.77 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=111.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceee--------------cCCCCceeEEE---EEEeCCceEEEeCCCCccccchhH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEE 85 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~ 85 (198)
+|+++|.+|+|||||+++|++....... ....+++.... ....+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 4899999999999999999987311111 01122333322 2222567999999996321
Q ss_pred HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc
Q 029158 86 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 165 (198)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 165 (198)
......++ ..+|++++|+|+.++......+.+..+...+.|+++|+||+|+..+.+.....+.+++.+....
T Consensus 76 -----~~~~~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 76 -----SSEVIRGL---SVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG 147 (189)
T ss_pred -----HHHHHHHH---HhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence 12222222 3499999999999876666666777777678999999999999986655555566665554432
Q ss_pred -----------CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 166 -----------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 166 -----------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
....+++++||++|.|++++++++...++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 23688999999999999999999998765
No 30
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=2.3e-24 Score=165.75 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...|+++|.||||||||+++|.+.+ ..+++++.||....... ...++.++||||+.+..... ..+..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~ 229 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHR 229 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHH
Confidence 3589999999999999999999874 56788999988765332 24579999999986543221 123345
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
|+.....++++++|+|+++.....+ ..+...+.. .++|+++|+||+|+........ ...+.... ....+
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~--~~~~~~~~---~~~~~ 304 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE--KRAALELA---ALGGP 304 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH--HHHHHHHH---hcCCC
Confidence 5555666899999999986322222 234444443 2689999999999976543221 11111111 11368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhccc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
++++||++++|+++++++|.+.+...
T Consensus 305 i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 305 VFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999887654
No 31
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=1.7e-24 Score=166.30 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=111.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---C-CceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...|+++|.+|+|||||+++|.+.. ..+.+++.||...+.... + ..+.++||||+.+..... ..+...
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~ 228 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHR 228 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHH
Confidence 3689999999999999999999874 557888888876543222 3 689999999986543221 123334
Q ss_pred HHhcccccceEEEEEeCCCCC---CcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGV---KPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~---~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
|++....++++++|+|++..- ...+ ..+.+.+.. .++|+++|+||+|+......++..+.+.+..
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~------ 302 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL------ 302 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc------
Confidence 555555689999999998631 1111 223333432 2689999999999987654433333333221
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
..+++++||++++|+++++++|.+.+
T Consensus 303 ~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 36899999999999999999998765
No 32
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=7.7e-24 Score=146.94 Aligned_cols=152 Identities=26% Similarity=0.351 Sum_probs=108.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|++|+|||||++++++. ......+.++++.+.. +...+..+.+|||||+.+...... ........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-----~~~~~~~~ 75 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE-----KIGIERAR 75 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH-----HHHHHHHH
Confidence 47999999999999999999987 4555667777776543 222356899999999865422111 11111222
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
.....+|++++|+|++......+...+.. ..+.|+++|+||+|+.+.... .......+++++||++
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~------------~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL------------LSLLAGKPIIAISAKT 141 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc------------ccccCCCceEEEECCC
Confidence 33345899999999997555555544443 447999999999999875432 1122357899999999
Q ss_pred CCChHHHHHHHHHhh
Q 029158 179 GAGIRSLRTVLSKIA 193 (198)
Q Consensus 179 ~~gi~~l~~~i~~~~ 193 (198)
+.|+++++++|.+.+
T Consensus 142 ~~~v~~l~~~l~~~~ 156 (157)
T cd04164 142 GEGLDELKEALLELA 156 (157)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998865
No 33
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=6.6e-24 Score=169.06 Aligned_cols=163 Identities=23% Similarity=0.243 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
...|+++|.||+|||||+|+|.+.+ ..+.++++||....... .+..++++||||+.+..... ..+..++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------~gLg~~f 230 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------KGLGLDF 230 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------hHHHHHH
Confidence 3589999999999999999999874 45788999997754332 35689999999986533211 2233345
Q ss_pred HhcccccceEEEEEeCCCCC----CcCcHH-HHHHHH--------------hhCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158 98 VSTRVSLKRVCLLIDTKWGV----KPRDHE-LISLME--------------RSQTKYQVVLTKTDTVFPIDVARRAMQIE 158 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~----~~~~~~-~~~~~~--------------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 158 (198)
+.....+|++++|+|++... ...+.+ +...+. ..++|+|+|+||+|+....+.. +.+.
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~---e~l~ 307 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA---EFVR 307 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH---HHHH
Confidence 55566699999999997521 111111 122221 2368999999999997654332 2222
Q ss_pred HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158 159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
+.+.. ...+++++||++++|+++|+++|.+.+...|
T Consensus 308 ~~l~~---~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 308 PELEA---RGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHH---cCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 22222 1478999999999999999999998876543
No 34
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1.9e-23 Score=168.42 Aligned_cols=161 Identities=21% Similarity=0.250 Sum_probs=115.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
..++|+++|.+|+|||||+|+|++. ......+.+++|++..... .+..+.+|||||+.... ......+.. +
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~---~ 110 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAE---Q 110 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHH---H
Confidence 4589999999999999999999987 4456677888887754333 35679999999975321 111212222 2
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
.......+|++++|+|++.+....+..+...+...++|+++|+||+|+...... ..+. ... +.. ..+++||
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~------~~~~-~~~-g~~-~~~~iSA 181 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD------AAAL-WSL-GLG-EPHPVSA 181 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh------hHHH-Hhc-CCC-CeEEEEc
Confidence 222333499999999999887777777888888888999999999999653211 1111 111 112 3479999
Q ss_pred CCCCChHHHHHHHHHhhcc
Q 029158 177 KSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~~~ 195 (198)
++|.|+++++++|.+.+..
T Consensus 182 ~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCCcHHHHHHHHhhccc
Confidence 9999999999999887643
No 35
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.92 E-value=2.5e-23 Score=174.82 Aligned_cols=172 Identities=20% Similarity=0.198 Sum_probs=123.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
+...++|+++|.+|+|||||+|+|++. ....+.++++||.+.. +...+.++.+|||||+.......+..+.+..+
T Consensus 447 ~~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~- 524 (712)
T PRK09518 447 PSGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSL- 524 (712)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHH-
Confidence 345689999999999999999999998 4455677888887743 33346789999999975432211111111111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
........+|++++|+|++++....+..++..+...++|+++|+||+|+......+.....+...+.. ....+++++
T Consensus 525 -r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~--~~~~~ii~i 601 (712)
T PRK09518 525 -RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDR--VTWARRVNL 601 (712)
T ss_pred -HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccC--CCCCCEEEE
Confidence 11222345999999999999888888888877777789999999999998754433333333333221 235788999
Q ss_pred ccCCCCChHHHHHHHHHhhc
Q 029158 175 SSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (198)
||++|.|++++++.+.+.+.
T Consensus 602 SAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 36
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=1.7e-23 Score=151.63 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eC-CceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
+..++|+++|++|+|||||++++++.. ....+.+.+|.+..... .+ ..+.+|||||+.+.... .....+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~- 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH-QLVEAFRST- 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCH-HHHHHHHHH-
Confidence 456899999999999999999999973 22333334443322111 12 38999999998543221 111222221
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcH-HHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
......+|++++|+|+++....... .+.+.+. ..+.|+++|+||+|+....... .. ......+
T Consensus 115 ---~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-------~~---~~~~~~~ 181 (204)
T cd01878 115 ---LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-------ER---LEAGRPD 181 (204)
T ss_pred ---HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-------HH---hhcCCCc
Confidence 2223348999999999875443332 2233333 3368999999999997754332 11 1123578
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||+++.|+++++++|...+
T Consensus 182 ~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 182 AVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred eEEEEcCCCCCHHHHHHHHHhhC
Confidence 99999999999999999998753
No 37
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=1.5e-23 Score=162.42 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=105.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...++|+++|.+|+|||||+|+|++.+ ....+.+++|.+..... .+..+.+|||||+.... .+...+.+...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~lie~f~~t- 262 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHELVAAFRAT- 262 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC-CHHHHHHHHHH-
Confidence 456899999999999999999999984 45566777776643222 35689999999983321 12222223222
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcH----HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
+.....+|++++|+|++++...... .+++.+...+.|+++|+||+|+....... ... . ...+
T Consensus 263 ---le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~~---~----~~~~ 328 (351)
T TIGR03156 263 ---LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RLE---E----GYPE 328 (351)
T ss_pred ---HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HHH---h----CCCC
Confidence 2233458999999999875433332 22333333368999999999997643221 111 1 1246
Q ss_pred cEEeccCCCCChHHHHHHHHHh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++++||++|+|+++++++|.+.
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHhh
Confidence 8999999999999999999765
No 38
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.91 E-value=4.1e-23 Score=147.97 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=114.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccc--------------eeecCCCCceeEEE---EEEeCCceEEEeCCCCccccch
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~ 83 (198)
..+|+++|..++|||||+++|++.... .......++|.+.. +...+.++.++||||+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~------ 75 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH------ 75 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH------
Confidence 357999999999999999999864100 01111344555443 2223578999999997
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHH-HHHHHHHHHHH
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEESL 161 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~~~ 161 (198)
..+..+.......+|++++|+|+..+....+.+++..+...++| +|+++||+|+....+. +...+++.+.+
T Consensus 76 -------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l 148 (195)
T cd01884 76 -------ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELL 148 (195)
T ss_pred -------HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 44566667777789999999999998888888888888888887 7899999999754443 33455666666
Q ss_pred Hhcc--CCCCCcEEeccCCCCCh----------HHHHHHHHHh
Q 029158 162 KANN--SLVQPVMMVSSKSGAGI----------RSLRTVLSKI 192 (198)
Q Consensus 162 ~~~~--~~~~~v~~~Sa~~~~gi----------~~l~~~i~~~ 192 (198)
.... ....+++++||.+|.++ ..|++.|...
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSY 191 (195)
T ss_pred HHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence 5442 23589999999999874 4566666543
No 39
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=1.8e-23 Score=145.41 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=106.4
Q ss_pred EEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158 26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 102 (198)
Q Consensus 26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
++|.+|+|||||++++++.. .....++++|.+.. +...+.++.+|||||+.+...... ...+...++.. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence 57999999999999999873 45566677776543 222356799999999754321111 02333445543 5
Q ss_pred ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158 103 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi 182 (198)
.+|++++|+|+.+. .....+...+...++|+++|+||+|+............+...+ +.+++++||++++|+
T Consensus 74 ~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~------~~~~~~iSa~~~~~~ 145 (158)
T cd01879 74 KPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELL------GVPVVPTSARKGEGI 145 (158)
T ss_pred CCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhh------CCCeEEEEccCCCCH
Confidence 69999999999862 3334455566667899999999999976543332222222221 468999999999999
Q ss_pred HHHHHHHHHhh
Q 029158 183 RSLRTVLSKIA 193 (198)
Q Consensus 183 ~~l~~~i~~~~ 193 (198)
+++++++...+
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=2.8e-23 Score=166.24 Aligned_cols=157 Identities=24% Similarity=0.320 Sum_probs=118.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
+|+++|.+|+|||||+|+|++. ..+.+.+.+++|++.... ..+..+.+|||||+... ..... ..+..+...
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~---~~~~~~~~~ 74 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLD---KQIREQAEI 74 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHH---HHHHHHHHH
Confidence 4899999999999999999998 456778888988775433 24678999999998532 12222 223333344
Q ss_pred cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
....+|++++|+|+..+....+.++.+.+++.++|+++|+||+|+....... . + +... ...+++++||++|
T Consensus 75 ~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~---~---~-~~~l--g~~~~~~vSa~~g 145 (429)
T TIGR03594 75 AIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA---A---E-FYSL--GFGEPIPISAEHG 145 (429)
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH---H---H-HHhc--CCCCeEEEeCCcC
Confidence 4455999999999999888888888888988899999999999997643211 1 1 1111 1347899999999
Q ss_pred CChHHHHHHHHHhhc
Q 029158 180 AGIRSLRTVLSKIAR 194 (198)
Q Consensus 180 ~gi~~l~~~i~~~~~ 194 (198)
.|++++++++.+.+.
T Consensus 146 ~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 146 RGIGDLLDAILELLP 160 (429)
T ss_pred CChHHHHHHHHHhcC
Confidence 999999999988764
No 41
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.91 E-value=5.2e-23 Score=168.77 Aligned_cols=160 Identities=25% Similarity=0.353 Sum_probs=121.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.|+++|.+++|||||+++|++.. .........++|.+..+.. .+..+.+|||||+ +.+...++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-------------e~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-------------EKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-------------HHHHHHHH
Confidence 68999999999999999999752 0011222355666654333 2467899999996 45566777
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHHHHHHHHHHHHHhccC-CCCCcEEecc
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNS-LVQPVMMVSS 176 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~Sa 176 (198)
.....+|++++|+|+++++.....+.+..+...++| +++|+||+|+.+....+...+.+++.+..... ...+++++||
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA 148 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSA 148 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeC
Confidence 777789999999999998777777777777777888 99999999999876555555566665544322 2589999999
Q ss_pred CCCCChHHHHHHHHHhhcc
Q 029158 177 KSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~~~ 195 (198)
++|+|+++++++|.+.+..
T Consensus 149 ~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 149 KTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCchhHHHHHHHHHHh
Confidence 9999999999999876654
No 42
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.91 E-value=5.4e-24 Score=149.50 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=96.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccce---eecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~---~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
+|+++|++|+|||||+++|.+.. .. .......+|.... +...+..+.+|||||... +..+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 69 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF-SKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LRSLWDK 69 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc-ccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHH
Confidence 48999999999999999998752 11 0011112232222 222367899999999632 1222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
++ ..+|++++|+|+.+...... ..++..+. ..+.|+++++||+|+.......+..+.+............++
T Consensus 70 ~~---~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T cd04160 70 YY---AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLV 146 (167)
T ss_pred Hh---CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEE
Confidence 33 34899999999976321111 12222221 236899999999999765443333333333222222234689
Q ss_pred EEeccCCCCChHHHHHHHHH
Q 029158 172 MMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~ 191 (198)
+++||++|+|++++++||.+
T Consensus 147 ~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 147 LPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEeeCCCCcCHHHHHHHHhc
Confidence 99999999999999999965
No 43
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=2e-23 Score=146.88 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
...+|+++|.+|+|||||+++|..... . .+.+|+ .+. .+...+..+.+|||||.. .+..+...+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~-~---~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~ 73 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS-V---TTIPTVGFNVETVTYKNVKFNVWDVGGQD----------KIRPLWRHY 73 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC-c---cccCCcccceEEEEECCEEEEEEECCCCH----------HHHHHHHHH
Confidence 457999999999999999999987632 1 122221 111 122235779999999962 112333344
Q ss_pred HhcccccceEEEEEeCCCCCC--cCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+.. +|++++|+|+++... ....++.+.+.. .+.|+++|+||+|+......++....+. +........+++
T Consensus 74 ~~~---a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~ 148 (168)
T cd04149 74 YTG---TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLG--LTRIRDRNWYVQ 148 (168)
T ss_pred hcc---CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcC--CCccCCCcEEEE
Confidence 444 899999999986321 111222233322 2589999999999975332222222211 001112235689
Q ss_pred EeccCCCCChHHHHHHHHH
Q 029158 173 MVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~ 191 (198)
++||++|+|++++++||.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999999965
No 44
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.91 E-value=2.3e-23 Score=147.22 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=97.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
+...++|+++|++|+|||||++++.+. ......+..+... ..+...+..+.+|||||... +..+...+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~-~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~ 78 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQI-KTLEYEGYKLNIWDVGGQKT----------LRPYWRNY 78 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccce-EEEEECCEEEEEEECCCCHH----------HHHHHHHH
Confidence 345678999999999999999999987 3322222211111 11222356789999999521 12233344
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHH-H---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh--ccCCCCC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQP 170 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~ 170 (198)
+. .+|++++|+|+.....-.. ..++..+ . ..+.|+++|+||+|+......++ +++.+.. ......+
T Consensus 79 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~ 151 (173)
T cd04154 79 FE---STDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEE----IREALELDKISSHHWR 151 (173)
T ss_pred hC---CCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHH----HHHHhCccccCCCceE
Confidence 43 4899999999986421111 1222222 2 24689999999999976433222 2222211 1123568
Q ss_pred cEEeccCCCCChHHHHHHHHH
Q 029158 171 VMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
++++||++|.|++++++++..
T Consensus 152 ~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 152 IQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEeccCCCCcCHHHHHHHHhc
Confidence 999999999999999999864
No 45
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.91 E-value=1.4e-22 Score=166.84 Aligned_cols=160 Identities=23% Similarity=0.354 Sum_probs=124.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.|+++|.+++|||||+++|.+.+ .........+.|.+..+... +..+.+|||||+ +.+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-------------e~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-------------EKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-------------HHHHHHH
Confidence 58999999999999999999752 11122333567777654332 456899999997 4556667
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
......+|++++|+|+..++...+.+.+..+...++| +++|+||+|+.+....+...+.+++.+........+++++||
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA 148 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAA 148 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeC
Confidence 7777779999999999999888888888888877777 579999999987666666667777666544333578999999
Q ss_pred CCCCChHHHHHHHHHhhcc
Q 029158 177 KSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~~~ 195 (198)
++|+|+++|+++|.+....
T Consensus 149 ~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 149 TEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCCHHHHHHHHHhhcc
Confidence 9999999999999876544
No 46
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=4.6e-23 Score=146.38 Aligned_cols=156 Identities=22% Similarity=0.249 Sum_probs=100.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccc-------eeecC------CCCceeEE-----EEE---EeCCceEEEeCCCCccc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGV-------VRTSD------KPGLTQTI-----NFF---KLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~-------~~~~~------~~~~t~~~-----~~~---~~~~~~~iiDtpG~~~~ 80 (198)
++|+++|.+++|||||+++|++.... ....+ ..+++... .+. ..+..+.+|||||+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~- 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD- 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh-
Confidence 36899999999999999999874200 00111 11223221 111 1245688999999732
Q ss_pred cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 160 (198)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 160 (198)
+......++. .+|++++|+|++.+....+...+..+...++|+++|+||+|+..... .+..+.+.+.
T Consensus 80 ---------~~~~~~~~~~---~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~ 146 (179)
T cd01890 80 ---------FSYEVSRSLA---ACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-ERVKQQIEDV 146 (179)
T ss_pred ---------hHHHHHHHHH---hcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-HHHHHHHHHH
Confidence 1223333443 38999999999886655555555555556899999999999965321 2222333333
Q ss_pred HHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+. ....+++++||++|+|+++++++|.+.++
T Consensus 147 ~~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 147 LG---LDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred hC---CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 21 11235899999999999999999988764
No 47
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=1.9e-23 Score=145.76 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=92.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 102 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
+|+++|++|+|||||++++.+.. .....+..+.+...........+.+|||||... +......++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~~~--- 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE-LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK----------MRTVWKCYLE--- 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-cccccCccCcceEEEEeCCceEEEEEECCCCHh----------HHHHHHHHhc---
Confidence 58999999999999999999874 222111111111111112246799999999621 1222233333
Q ss_pred ccceEEEEEeCCCCCC--cCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 103 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~--~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
.+|++++|+|+++... .....+...+.. .+.|+++|+||+|+......++....+... ........+++++||+
T Consensus 67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~Sa~ 145 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLK-KYCSDRDWYVQPCSAV 145 (160)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCc-ccCCCCcEEEEecccc
Confidence 3899999999986421 111122222221 368999999999997543222222221100 0011123579999999
Q ss_pred CCCChHHHHHHHHH
Q 029158 178 SGAGIRSLRTVLSK 191 (198)
Q Consensus 178 ~~~gi~~l~~~i~~ 191 (198)
+|+|+++++++|.+
T Consensus 146 ~~~gv~~~~~~i~~ 159 (160)
T cd04156 146 TGEGLAEAFRKLAS 159 (160)
T ss_pred cCCChHHHHHHHhc
Confidence 99999999999864
No 48
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.2e-22 Score=162.76 Aligned_cols=156 Identities=23% Similarity=0.327 Sum_probs=114.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
++|+++|.+|+|||||+|+|++. ..+.+.+.+++|++..... .+..+.+|||||+.... .... ..+..+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~---~~~~~~~~ 75 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFE---KQIREQAE 75 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHH---HHHHHHHH
Confidence 68999999999999999999988 4556777888887654322 36789999999986521 1111 22223333
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
.....+|++++|+|++++....+.++.+++...+.|+++|+||+|+.... ....+. ... ....++++||++
T Consensus 76 ~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~------~~~~~~-~~l--g~~~~~~iSa~~ 146 (435)
T PRK00093 76 LAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE------ADAYEF-YSL--GLGEPYPISAEH 146 (435)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch------hhHHHH-Hhc--CCCCCEEEEeeC
Confidence 34445999999999998877777888888888899999999999976422 111111 111 123489999999
Q ss_pred CCChHHHHHHHHHh
Q 029158 179 GAGIRSLRTVLSKI 192 (198)
Q Consensus 179 ~~gi~~l~~~i~~~ 192 (198)
|.|+++++++|...
T Consensus 147 g~gv~~l~~~I~~~ 160 (435)
T PRK00093 147 GRGIGDLLDAILEE 160 (435)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999873
No 49
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.90 E-value=2.8e-22 Score=146.59 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=112.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccc-----eee-------cCCCCceeE-----E---------------------E-EE
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGV-----VRT-------SDKPGLTQT-----I---------------------N-FF 63 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~-----~~~-------~~~~~~t~~-----~---------------------~-~~ 63 (198)
+|+++|..++|||||++++...... ... +...+.|.. . . +.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999854210 000 000111110 0 1 11
Q ss_pred EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEec
Q 029158 64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 141 (198)
Q Consensus 64 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 141 (198)
..+..+.++||||+ ..+.+....... .+|++++|+|+..++...+.+++..+...++|+++|+||
T Consensus 81 ~~~~~i~liDtpG~-------------~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGH-------------ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCc-------------HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence 22567999999997 333444444443 589999999999998888899999999889999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHh-----------------------ccCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158 142 TDTVFPIDVARRAMQIEESLKA-----------------------NNSLVQPVMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 142 ~Dl~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
+|+.......+....+++.+.. ......|+|.+||.+|+|+++|.+.|..
T Consensus 148 ~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 148 IDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9998776677777777766542 1233469999999999999999998865
No 50
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=5.5e-23 Score=164.31 Aligned_cols=153 Identities=29% Similarity=0.350 Sum_probs=109.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.++|+++|.+|+|||||+|+|++. ....+.+.+++|.+.. +...+.++.+|||||+.+.. +.... ......
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~---~gi~~~ 288 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEK---IGIERS 288 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHH---HHHHHH
Confidence 478999999999999999999997 4456778888887754 22246789999999985421 11110 001112
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
+.....+|++++|+|++++....+...+.. ..+.|+++|+||+|+....... .....+++++||+
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~-------------~~~~~~~i~iSAk 353 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE-------------EENGKPVIRISAK 353 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh-------------hccCCceEEEEee
Confidence 223344999999999987655444444443 3478999999999997643221 1224689999999
Q ss_pred CCCChHHHHHHHHHhhc
Q 029158 178 SGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 178 ~~~gi~~l~~~i~~~~~ 194 (198)
+|+|+++++++|.+.+.
T Consensus 354 tg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 354 TGEGIDELREAIKELAF 370 (449)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 51
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=1.8e-22 Score=169.63 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=119.7
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
.+...++|+++|.+|+|||||+|+|++. ....+.+.+++|++..... .+..+.+|||||+.... .... ..+
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~---~~~ 344 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGID---SAI 344 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHH---HHH
Confidence 3455689999999999999999999987 4567788899988765433 25689999999975321 1112 222
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
..+.......+|++++|+|+..++...+.++.+.++..+.|+++|+||+|+...... ..+. ... + ....++
T Consensus 345 ~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~------~~~~-~~l-g-~~~~~~ 415 (712)
T PRK09518 345 ASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD------AAEF-WKL-G-LGEPYP 415 (712)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh------HHHH-HHc-C-CCCeEE
Confidence 333333344599999999999888888888888888889999999999998653211 1111 111 1 124679
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||++|.|+++++++|.+.+.
T Consensus 416 iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 416 ISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred EECCCCCCchHHHHHHHHhcc
Confidence 999999999999999988764
No 52
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=7.3e-23 Score=142.77 Aligned_cols=150 Identities=16% Similarity=0.143 Sum_probs=93.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 100 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198)
+|+++|.+|+|||||++++..... . .+.+|+ .... +......+.+|||||... +..+...+++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~-~---~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~ 67 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI-V---TTIPTIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN 67 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-c---ccCCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHhcC
Confidence 799999999999999999976532 1 122221 1111 222357799999999621 23333444444
Q ss_pred ccccceEEEEEeCCCCC--CcCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 101 RVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
+|++++|+|+++.. .....++...+.. ...|+++++||+|+......++....+. ..........++++|
T Consensus 68 ---ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~S 142 (159)
T cd04150 68 ---TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG--LHSLRNRNWYIQATC 142 (159)
T ss_pred ---CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhC--ccccCCCCEEEEEee
Confidence 89999999997621 1111222222222 2589999999999975422222222221 011112234678999
Q ss_pred cCCCCChHHHHHHHHH
Q 029158 176 SKSGAGIRSLRTVLSK 191 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~ 191 (198)
|++|.|++++++||.+
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999999864
No 53
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.90 E-value=5.5e-23 Score=143.58 Aligned_cols=153 Identities=15% Similarity=0.207 Sum_probs=94.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcc-ceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 101 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (198)
+|+++|.+|+|||||+++|.+... .....+..+.+.. .+...+..+.+|||||... +..+...++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~-- 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFEKGNLSFTAFDMSGQGK----------YRGLWEHYYK-- 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEEECCEEEEEEECCCCHh----------hHHHHHHHHc--
Confidence 489999999999999999998631 1222222222211 1223456789999999621 1233334443
Q ss_pred cccceEEEEEeCCCCCCcCc-HHHHHHH-H-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 102 VSLKRVCLLIDTKWGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
.+|++++|+|+++...... ..++..+ . ..++|+++|+||+|+.......+....+.- ........+++++
T Consensus 68 -~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~--~~~~~~~~~~~~~ 144 (162)
T cd04157 68 -NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGL--ENIKDKPWHIFAS 144 (162)
T ss_pred -cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCC--ccccCceEEEEEe
Confidence 4899999999986432111 1223222 1 236899999999999764322222111110 0111123468999
Q ss_pred ccCCCCChHHHHHHHHH
Q 029158 175 SSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~ 191 (198)
||++|+|+++++++|.+
T Consensus 145 Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 145 NALTGEGLDEGVQWLQA 161 (162)
T ss_pred eCCCCCchHHHHHHHhc
Confidence 99999999999999865
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.90 E-value=1e-22 Score=142.00 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=95.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++++... ...+.+++.+. .+......+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHHHH
Confidence 5799999999999999999998732 22333333221 1111124578899999522 2344445
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
++.. +|++++|+|..+...... ..++..+.. .+.|+++|+||+|+........ ...+.... ...++
T Consensus 69 ~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~~---~~~~~ 139 (162)
T cd04138 69 YMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSR---QGQDLAKS---YGIPY 139 (162)
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHH---HHHHHHHH---hCCeE
Confidence 5544 889999999875221111 123333332 3689999999999975321111 11111111 14689
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++||++|.|++++++++.+.+
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 140 IETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 55
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.90 E-value=1e-22 Score=147.94 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=100.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccee-----------------------------ecCCCCceeEEE---EEEeCCceE
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------------TSDKPGLTQTIN---FFKLGTKLC 70 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~t~~~~---~~~~~~~~~ 70 (198)
+|+++|.+|+|||||+++|+....... .....++|.+.. +...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999986421110 011144555543 223467899
Q ss_pred EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCCcH-
Q 029158 71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPI- 148 (198)
Q Consensus 71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~- 148 (198)
++||||+ ..+..........+|++++|+|++.+....+......+...+. ++|+|+||+|+....
T Consensus 81 liDTpG~-------------~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~ 147 (208)
T cd04166 81 IADTPGH-------------EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSE 147 (208)
T ss_pred EEECCcH-------------HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCH
Confidence 9999996 2222334444556999999999998776666665666665564 478899999997532
Q ss_pred -HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158 149 -DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l 185 (198)
........+++.+........+++++||++|.|+++.
T Consensus 148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2233445555544444333467999999999998753
No 56
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=3.5e-23 Score=146.42 Aligned_cols=154 Identities=21% Similarity=0.239 Sum_probs=100.9
Q ss_pred EEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe-CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158 26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 101 (198)
Q Consensus 26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~-~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (198)
++|++|+|||||+++|.+.. . ...+++++|.... .... +.++.+|||||+.+..... +.+..+++...
T Consensus 1 iiG~~~~GKStll~~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK-P-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC-c-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHH
Confidence 58999999999999999984 2 4566667775543 2223 6789999999974421111 11222333444
Q ss_pred cccceEEEEEeCCCCC------CcCc-HHHHHHHH----------hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158 102 VSLKRVCLLIDTKWGV------KPRD-HELISLME----------RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 164 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~------~~~~-~~~~~~~~----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 164 (198)
..+|++++|+|+.... ...+ ..+...+. ..+.|+++|+||+|+.......... ... . .
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--~~~-~--~ 147 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL--VRE-L--A 147 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH--HHH-H--h
Confidence 4589999999998642 1111 11222222 1368999999999998765443322 111 1 1
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
.....+++++||+++.|++++++++...
T Consensus 148 ~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 2235789999999999999999998764
No 57
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.90 E-value=2.8e-22 Score=140.12 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=96.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|.+|+|||||++++++........+..+.+... .+......+.+|||||.. .+..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHASYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHHHh
Confidence 479999999999999999999873211111111111111 111123568899999952 2334444444
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
.. +|++++|+|+++.....+ ..++..+... +.|+++|+||+|+..... .+ ..+... ....+++++|
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~-~~----~~~~~~---~~~~~~~~~S 139 (161)
T cd04124 71 HK---AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT-QK----KFNFAE---KHNLPLYYVS 139 (161)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH-HH----HHHHHH---HcCCeEEEEe
Confidence 44 899999999986433222 3455555543 689999999999853211 11 111111 1147899999
Q ss_pred cCCCCChHHHHHHHHHhhc
Q 029158 176 SKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~~~ 194 (198)
|++|.|++++++.+.+.+.
T Consensus 140 a~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 140 AADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987653
No 58
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=1.2e-22 Score=143.70 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
...+|+++|++|+|||||+++++.... ....+..+.+. ..+...+..+.+|||||... +......++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~-~~~~~t~~~~~-~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~ 81 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNV-EEIVYKNIRFLMWDIGGQES----------LRSSWNTYYT 81 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEECCeEEEEEECCCCHH----------HHHHHHHHhh
Confidence 357899999999999999999987732 21222111111 12222367899999999521 1222233333
Q ss_pred cccccceEEEEEeCCCCCCcC--cHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 100 TRVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
.+|++++|+|+++..... ..++...+.. .+.|+++++||+|+....+.++..+.+... .......+++++
T Consensus 82 ---~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~--~~~~~~~~~~~~ 156 (174)
T cd04153 82 ---NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLT--SIRDHTWHIQGC 156 (174)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc--cccCCceEEEec
Confidence 489999999998632111 1122233322 258999999999997533222222222100 011124579999
Q ss_pred ccCCCCChHHHHHHHHH
Q 029158 175 SSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~ 191 (198)
||++|+|+++++++|.+
T Consensus 157 SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 157 CALTGEGLPEGLDWIAS 173 (174)
T ss_pred ccCCCCCHHHHHHHHhc
Confidence 99999999999999864
No 59
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=1.6e-22 Score=143.24 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
...+|+++|.+|+|||||++++..... . .+.+|+ .+.. .......+.+|||||... +..+...|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~-~---~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~ 77 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGES-V---TTIPTIGFNVETVTYKNISFTVWDVGGQDK----------IRPLWRHY 77 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC-C---CcCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHH
Confidence 357899999999999999999976532 1 222222 1111 222356789999999522 13334444
Q ss_pred HhcccccceEEEEEeCCCCCCc-CcHHHHHHH-Hh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKP-RDHELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~-~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+.. +|++++|+|+++..+- ...+++..+ .. .+.|+++|+||+|+......++....+.. .........++
T Consensus 78 ~~~---ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~ 152 (175)
T smart00177 78 YTN---TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGL--HSIRDRNWYIQ 152 (175)
T ss_pred hCC---CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCc--cccCCCcEEEE
Confidence 444 8999999999863211 112233332 22 25899999999999754332222222211 11112234577
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|+|++++++||.+.+.
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999988753
No 60
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=1.2e-22 Score=144.90 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....+|+++|.+|+|||||++++.+.. .....+....+. ..+...+..+.++||||... .......++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~ 82 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDR-LAQHQPTQHPTS-EELAIGNIKFTTFDLGGHQQ----------ARRLWKDYF 82 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccccce-EEEEECCEEEEEEECCCCHH----------HHHHHHHHh
Confidence 456899999999999999999999873 222222211111 11222356789999999621 122333444
Q ss_pred hcccccceEEEEEeCCCCCC--cCcHHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh-----ccCCC
Q 029158 99 STRVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-----NNSLV 168 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~ 168 (198)
. .+|++++|+|+++... .....+.+.+. ..+.|+++|+||+|+......++..+.+.-.... .....
T Consensus 83 ~---~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 159 (184)
T smart00178 83 P---EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP 159 (184)
T ss_pred C---CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence 4 4899999999976311 11112222222 1368999999999997543333333332200000 01124
Q ss_pred CCcEEeccCCCCChHHHHHHHHHh
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
..++++||++++|++++++||.+.
T Consensus 160 ~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 160 LEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eEEEEeecccCCChHHHHHHHHhh
Confidence 569999999999999999999865
No 61
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.90 E-value=1e-22 Score=141.79 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=93.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 100 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198)
+|+++|.+|+|||||++++..... .. +.++. ... .+...+..+.+|||||... +..+.+.++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~- 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-VT---TIPTIGFNVETVTYKNLKFQVWDLGGQTS----------IRPYWRCYYS- 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-cC---cCCccCcCeEEEEECCEEEEEEECCCCHH----------HHHHHHHHhc-
Confidence 589999999999999999977632 11 11111 111 1222356799999999621 1223334443
Q ss_pred ccccceEEEEEeCCCCCC--cCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 101 RVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
.+|++++|+|+++... ....++...++. .+.|+++|+||+|+.......+....+.. ........+++++|
T Consensus 66 --~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~~S 141 (158)
T cd04151 66 --NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGL--SELKDRTWSIFKTS 141 (158)
T ss_pred --CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCc--cccCCCcEEEEEee
Confidence 3999999999976311 111223333332 36899999999999754322222121110 01111235799999
Q ss_pred cCCCCChHHHHHHHHH
Q 029158 176 SKSGAGIRSLRTVLSK 191 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~ 191 (198)
|++|.|+++++++|.+
T Consensus 142 a~~~~gi~~l~~~l~~ 157 (158)
T cd04151 142 AIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCCHHHHHHHHhc
Confidence 9999999999999864
No 62
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.90 E-value=1.5e-22 Score=135.66 Aligned_cols=140 Identities=23% Similarity=0.284 Sum_probs=97.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCC-CccccchhHHHHHHHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDAWEELVKEYVST 100 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198)
.||+++|++|||||||+++|.+.+ . ...-|+.+.+.. .+||||| +.+. ..+....+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~-~-----~~~KTq~i~~~~-----~~IDTPGEyiE~----------~~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE-I-----RYKKTQAIEYYD-----NTIDTPGEYIEN----------PRFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC-C-----CcCccceeEecc-----cEEECChhheeC----------HHHHHHHHHH
Confidence 589999999999999999999873 1 112344454432 4599999 3332 3445555556
Q ss_pred ccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC-CcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 101 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
...+|.|+++.|+++....-.-.+ ....+.|+|-|+||+|+. +..+.+...+.++.. . .-.+|.+|+.+|
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~f---a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a----G--~~~if~vS~~~~ 131 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGF---ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNA----G--VKEIFEVSAVTG 131 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchh---hcccCCCEEEEEECccCccchhhHHHHHHHHHHc----C--CCCeEEEECCCC
Confidence 667999999999987432222222 233468999999999999 444444444444433 1 245799999999
Q ss_pred CChHHHHHHHHH
Q 029158 180 AGIRSLRTVLSK 191 (198)
Q Consensus 180 ~gi~~l~~~i~~ 191 (198)
+|+++|.++|.+
T Consensus 132 eGi~eL~~~L~~ 143 (143)
T PF10662_consen 132 EGIEELKDYLEE 143 (143)
T ss_pred cCHHHHHHHHhC
Confidence 999999999864
No 63
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.90 E-value=3.9e-22 Score=138.28 Aligned_cols=159 Identities=28% Similarity=0.294 Sum_probs=107.8
Q ss_pred EEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158 26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 101 (198)
Q Consensus 26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (198)
++|++|+|||||++++++. .........+++........ ..++.+|||||+.+....... +......+ .
T Consensus 1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~---~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRV---L 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHH---H
Confidence 5899999999999999987 33435555555554332221 568999999998664321110 01112222 2
Q ss_pred cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g 181 (198)
..+|++++++|+..........+.......+.|+++|+||+|+........... ............+++++||+++.|
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE--LRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH--HHHhhcccccCCceEEEeeeccCC
Confidence 348999999999986555555445555666899999999999998665544322 111222334468999999999999
Q ss_pred hHHHHHHHHHhh
Q 029158 182 IRSLRTVLSKIA 193 (198)
Q Consensus 182 i~~l~~~i~~~~ 193 (198)
++++++++.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (163)
T cd00880 152 IDELREALIEAL 163 (163)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 64
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.90 E-value=2.2e-22 Score=137.69 Aligned_cols=140 Identities=20% Similarity=0.196 Sum_probs=89.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 102 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
+|+++|.+|+|||||+++|.+.. . .+. .|....+. -.+|||||... .. ......+.....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-~----~~~-~t~~~~~~-----~~~iDt~G~~~-----~~----~~~~~~~~~~~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-I----LYK-KTQAVEYN-----DGAIDTPGEYV-----EN----RRLYSALIVTAA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-c----ccc-cceeEEEc-----CeeecCchhhh-----hh----HHHHHHHHHHhh
Confidence 79999999999999999999873 1 121 23323322 17899999511 01 111222222345
Q ss_pred ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158 103 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi 182 (198)
.+|++++|+|++++.+.....+...+ ..|+++|+||+|+....... +..++..... ...+++++||++|.|+
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~~~--~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLAEADVDI---ERAKELLETA--GAEPIFEISSVDEQGL 133 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccCCcccCH---HHHHHHHHHc--CCCcEEEEecCCCCCH
Confidence 59999999999886655554444332 35999999999997532111 1122222211 1247999999999999
Q ss_pred HHHHHHHH
Q 029158 183 RSLRTVLS 190 (198)
Q Consensus 183 ~~l~~~i~ 190 (198)
+++++++.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 65
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=3.9e-22 Score=141.83 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=97.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
...+|+++|.+|+|||||++++..... ... .+....+.. +...+..+.+|||||.. .+..+...++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~--~pt~g~~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~~~ 82 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 82 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-ccc--cCCcceeEEEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence 347899999999999999999987632 211 111111111 22235779999999951 2233444455
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHH-HHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc--cCCCCCc
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPV 171 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~-~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~v 171 (198)
.. +|++++|+|+++...-.. ...+. .+.. .+.|+++|+||+|+....+.++ +.+.+... ......+
T Consensus 83 ~~---a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 83 QN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHSLRQRHWYI 155 (181)
T ss_pred cc---CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHH----HHHHhCccccCCCceEE
Confidence 44 899999999986321111 11222 2221 2689999999999976544332 22222211 1112346
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|+|++++++||.+.+.
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHh
Confidence 68999999999999999987653
No 66
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=5.6e-22 Score=139.05 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=96.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|++|+|||||++++.+...........++..... +... ...+.+|||||. +.+..+...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ----------ERFRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh----------HHHHHHHHHH
Confidence 46899999999999999999987632111111111111111 1111 247899999994 1223333344
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+. .+|++++++|+++...-.. ..++..+.. .+.|+++|+||+|+....... .+...+..... ...++++
T Consensus 73 ~~---~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~e 145 (165)
T cd01864 73 YR---SANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL--FEEACTLAEKN--GMLAVLE 145 (165)
T ss_pred hc---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHHc--CCcEEEE
Confidence 43 3899999999987422222 344554443 368999999999997543211 11111111111 1246899
Q ss_pred eccCCCCChHHHHHHHHHhh
Q 029158 174 VSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+||++|.|+++++++|.+.+
T Consensus 146 ~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 146 TSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 99999999999999998653
No 67
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.90 E-value=3.6e-22 Score=139.70 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=98.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..+|+++|.+|+|||||++++++.. ....+.+++.+.. +......+.+|||||..+ +..+..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 68 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----------FSAMRE 68 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc----------hhHHHH
Confidence 3589999999999999999999873 2333334433211 111234688999999632 233344
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
.++.. +|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+........ +...+.... ...+
T Consensus 69 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~~~~~~~---~~~~ 140 (164)
T cd04145 69 QYMRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR--EEGQELARK---LKIP 140 (164)
T ss_pred HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH--HHHHHHHHH---cCCc
Confidence 44443 899999999986322111 223333322 3689999999999976432111 112222221 1468
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|+++++++|.+.++
T Consensus 141 ~~~~Sa~~~~~i~~l~~~l~~~~~ 164 (164)
T cd04145 141 YIETSAKDRLNVDKAFHDLVRVIR 164 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHhhC
Confidence 999999999999999999987653
No 68
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=2.4e-22 Score=141.10 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=97.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc----eeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL----TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~----t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
+|+++|.+|+|||||++++.+... . ..++.+ +....+......+.+|||||.... ......++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 68 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-P--ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD----------RANLAAEI 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-C--ccCCCcccceEeeeeecCCeEEEEEEeCCCchhh----------hHHHhhhc
Confidence 799999999999999999998742 1 222222 222222223567899999996321 11222233
Q ss_pred hcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHH---HHHHHHHHHHHHhccCCCCCc
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDV---ARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~v 171 (198)
..+|++++|+|+.+...... ..++..+.. .+.|+++|+||+|+.+.... ++....+.+.+.. ..++
T Consensus 69 ---~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~ 141 (166)
T cd01893 69 ---RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE----IETC 141 (166)
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc----ccEE
Confidence 44899999999876433222 234444443 26899999999999765432 1111222222211 1479
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++||+++.|++++++.+.+.+
T Consensus 142 ~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 142 VECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEeccccccCHHHHHHHHHHHh
Confidence 9999999999999999988765
No 69
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.90 E-value=1.4e-22 Score=141.59 Aligned_cols=151 Identities=16% Similarity=0.108 Sum_probs=96.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||+++++.... ...+.+++.+ .........+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------cchHHHH
Confidence 5899999999999999999998732 2333333322 11112235678999999522 1333334
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
++.. +|++++|+|.++..+... ..++..+.. .+.|+++|+||+|+........ +...+... . ...++
T Consensus 69 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~-~--~~~~~ 140 (163)
T cd04136 69 YIKN---GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR--EEGQALAR-Q--WGCPF 140 (163)
T ss_pred Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH--HHHHHHHH-H--cCCeE
Confidence 4443 899999999976322211 233344432 2589999999999975332211 11111111 1 13789
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++||++|.|++++++++.+.+
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 141 YETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEecCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998754
No 70
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=4.2e-22 Score=162.93 Aligned_cols=158 Identities=21% Similarity=0.272 Sum_probs=111.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CC-ceEEEeCCCCccccchhHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~-~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..+.|+|+++|.+++|||||+++|.+.. +. ....+++|.+...+.. +. .+.||||||+.. +
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~-------------F 148 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTK-VA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA-------------F 148 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCC-cc-cccCCceeecceEEEEEECCCcEEEEEECCCCcc-------------h
Confidence 4567899999999999999999999873 22 2334556665443221 33 799999999722 2
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH--HHhccCCCCCc
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPV 171 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~v 171 (198)
..........+|++++|+|+.++......+.+..+...++|+++++||+|+.... .++....+.+. ....+....++
T Consensus 149 ~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 149 TSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIF 227 (587)
T ss_pred hhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceE
Confidence 2222334556999999999998887777888877777789999999999996532 12222232221 11112224679
Q ss_pred EEeccCCCCChHHHHHHHHH
Q 029158 172 MMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~ 191 (198)
+++||++|+|+++++++|..
T Consensus 228 v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 228 VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEECCCCCChHHHHHhhhh
Confidence 99999999999999999864
No 71
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=5.1e-22 Score=138.16 Aligned_cols=146 Identities=20% Similarity=0.278 Sum_probs=95.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 101 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (198)
.+|+++|.+|+|||||+++|.+.... ...+....+... .+|||||..... ......++...
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~------~~~~~~v~~~~~----~~iDtpG~~~~~---------~~~~~~~~~~~ 62 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL------ARKTQAVEFNDK----GDIDTPGEYFSH---------PRWYHALITTL 62 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc------CccceEEEECCC----CcccCCccccCC---------HHHHHHHHHHH
Confidence 37999999999999999999876311 123333333222 269999963321 11222223334
Q ss_pred cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g 181 (198)
..+|++++|+|++.+......+..+ + ..++|+++++||+|+.... .+. +.+.+... ....|++++||++|+|
T Consensus 63 ~~ad~il~v~d~~~~~s~~~~~~~~-~-~~~~~ii~v~nK~Dl~~~~-~~~----~~~~~~~~-~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 63 QDVDMLIYVHGANDPESRLPAGLLD-I-GVSKRQIAVISKTDMPDAD-VAA----TRKLLLET-GFEEPIFELNSHDPQS 134 (158)
T ss_pred hcCCEEEEEEeCCCcccccCHHHHh-c-cCCCCeEEEEEccccCccc-HHH----HHHHHHHc-CCCCCEEEEECCCccC
Confidence 5699999999998764444433333 2 2368999999999996532 222 22222222 2236999999999999
Q ss_pred hHHHHHHHHHhhc
Q 029158 182 IRSLRTVLSKIAR 194 (198)
Q Consensus 182 i~~l~~~i~~~~~ 194 (198)
++++++++.+...
T Consensus 135 i~~l~~~l~~~~~ 147 (158)
T PRK15467 135 VQQLVDYLASLTK 147 (158)
T ss_pred HHHHHHHHHHhch
Confidence 9999999988764
No 72
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.89 E-value=1e-22 Score=143.39 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=94.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--IN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
+|+++|.+|+|||||++++.+.. . ..+. +|.. .. +...+..+.+|||||.... ......++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~---~~~~-~T~~~~~~~~~~~~~~i~l~Dt~G~~~~----------~~~~~~~~~ 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-F---MQPI-PTIGFNVETVEYKNLKFTIWDVGGKHKL----------RPLWKHYYL 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-C---CCcC-CcCceeEEEEEECCEEEEEEECCCChhc----------chHHHHHhc
Confidence 58999999999999999999873 1 1222 2222 21 2233678999999996321 222233333
Q ss_pred cccccceEEEEEeCCCC--CCcCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 100 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
.+|++++|+|+++. +.....++.+.+.. .+.|+++|+||+|+......++..+.+ ............++++
T Consensus 66 ---~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 141 (169)
T cd04158 66 ---NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKLCCGRSWYIQGC 141 (169)
T ss_pred ---cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccccCCCcEEEEeC
Confidence 38999999999763 11121222233322 248999999999997543332222221 1000001112468899
Q ss_pred ccCCCCChHHHHHHHHHhhc
Q 029158 175 SSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (198)
||++|.|++++++||.+.+.
T Consensus 142 Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 142 DARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999987654
No 73
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.89 E-value=3.4e-22 Score=142.75 Aligned_cols=153 Identities=20% Similarity=0.139 Sum_probs=100.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc-eeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
...+|+++|..|+|||||+.++..... ...+.++ +.+. .+......+.+|||+|.. .+..+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l 71 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST---ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTI 71 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHH
Confidence 457899999999999999999998632 2222211 1221 111223678999999952 23444
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
...|+. .+|++++|+|.++..+-.. ..|++.+... +.|+|+|+||+|+....... .+..++.... .+.+
T Consensus 72 ~~~~~~---~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~--~~~~~~~a~~---~~~~ 143 (189)
T cd04121 72 FRSYSR---GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA--TEQAQAYAER---NGMT 143 (189)
T ss_pred HHHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC--HHHHHHHHHH---cCCE
Confidence 445554 3899999999987332222 3455555442 68999999999996532211 1122222221 2478
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||++|.|++++|++|.+.+
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 144 FFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 74
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.89 E-value=6.1e-22 Score=138.94 Aligned_cols=151 Identities=16% Similarity=0.098 Sum_probs=95.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|++|+|||||++++++..... .+.++. .+ .........+.+|||||.. .+..+..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS---KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP----------EYLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCccceeEEEEEEEECCeEEEEEEEECCccH----------HHHHHHH
Confidence 379999999999999999999984222 222221 11 1112224678999999952 1233334
Q ss_pred HHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh--------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER--------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 166 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~--------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
.++.. +|++++|+|.++..+.. ...++..+.. .+.|+++|+||+|+....... .+..+.....
T Consensus 68 ~~~~~---~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~--- 139 (168)
T cd04119 68 EFYKD---TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS--EDEGRLWAES--- 139 (168)
T ss_pred HHhcc---CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC--HHHHHHHHHH---
Confidence 44443 89999999998632211 1234443332 357999999999997422111 1111111111
Q ss_pred CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 167 LVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
...+++++||++++|+++++++|.+.+
T Consensus 140 ~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 140 KGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 136899999999999999999998754
No 75
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=1.1e-22 Score=142.49 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=96.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---E--EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---N--FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~--~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||+++++... ....+.+++.+. . +......+.+|||||... +..+...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc----------chhHHHH
Confidence 579999999999999999999762 223333444321 1 211235678999999522 2333444
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (198)
++.. +|++++|+|.++..+... .+++..+.. .+.|+++|+||+|+....... .....+.+. ...+
T Consensus 69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~ 139 (164)
T cd04175 69 YMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ------WGCA 139 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH------hCCE
Confidence 4444 899999999875322111 223333322 368999999999997532211 111222211 1368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|++++++++.+.+.
T Consensus 140 ~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 140 FLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987653
No 76
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=4.8e-22 Score=139.46 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=94.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---E--EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---I--NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~--~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++++.... ..+.++... . ........+.+|||||.... ..+...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR---ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc----------hHHHHH
Confidence 57999999999999999999987321 122222111 1 11112356889999996321 222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
++. .+|++++|+|.++..+... ..+++.+.. .+.|+++|+||+|+....+... +....... ....
T Consensus 69 ~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~---~~~~ 140 (165)
T cd04140 69 SIS---KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS--NEGAACAT---EWNC 140 (165)
T ss_pred Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH--HHHHHHHH---HhCC
Confidence 333 3899999999986433222 233444433 3589999999999976332211 11111111 1246
Q ss_pred CcEEeccCCCCChHHHHHHHHHh
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
+++++||++|+|+++++++|...
T Consensus 141 ~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 141 AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred cEEEeecCCCCCHHHHHHHHHhc
Confidence 89999999999999999999764
No 77
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=2.5e-22 Score=142.99 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
...+|+++|++|+|||||++++...... .+.+|+. .. .+...+..+.+|||||.. .+..+...+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~----~~~~T~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~ 81 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV----TTIPTIGFNVETVEYKNLKFTMWDVGGQD----------KLRPLWRHY 81 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCccccceEEEEECCEEEEEEECCCCH----------hHHHHHHHH
Confidence 3478999999999999999999765322 1222211 11 122235779999999952 123334444
Q ss_pred HhcccccceEEEEEeCCCCC--CcCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+.. +|++++|+|+++.. .....++.+.+.. .+.|+++|+||+|+......++....+.. ........+++
T Consensus 82 ~~~---ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~--~~~~~~~~~~~ 156 (182)
T PTZ00133 82 YQN---TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL--HSVRQRNWYIQ 156 (182)
T ss_pred hcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC--CcccCCcEEEE
Confidence 444 89999999997521 1111222222222 25899999999999754332222222111 01111124567
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|+|+++++++|.+.+.
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999987653
No 78
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.89 E-value=5.6e-22 Score=142.95 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=97.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.|+++|..|+|||||+.++.... ....+..|. .+.. +......+.+|||+|. +.+..+...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~---f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq----------e~~~~l~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT---FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ----------ERFNSITSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC---CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc----------hhhHHHHHH
Confidence 68999999999999999999873 222232221 1221 1112367899999995 223444555
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
|+.. +|++++|+|.++..+-.. ..|+..+.. .+.|+++|+||+|+....+... ...++..... .+.+++
T Consensus 69 y~~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~a~~~--~~~~~~ 141 (202)
T cd04120 69 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISR--QQGEKFAQQI--TGMRFC 141 (202)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCH--HHHHHHHHhc--CCCEEE
Confidence 5554 899999999987322222 234444443 2589999999999975332211 1111111111 136799
Q ss_pred EeccCCCCChHHHHHHHHHhh
Q 029158 173 MVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++||++|.|++++|+++.+.+
T Consensus 142 etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 142 EASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 79
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.89 E-value=4e-22 Score=167.36 Aligned_cols=159 Identities=21% Similarity=0.260 Sum_probs=115.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccc--h-hHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA--K-EEVKDAWEELV 94 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~--~-~~~~~~~~~~~ 94 (198)
..+|+++|.+|+|||||+|+|.+.+ ..+++++++|.+.. +...+..+.++||||+.+-.. . .... +...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~ 77 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIA 77 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHH
Confidence 4579999999999999999999874 46788899987654 333467899999999754211 0 0111 2223
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
+.++. ...+|++++|+|+++ .+....+..++.+.++|+++|+||+|+..........+.+++.+ +.|++++
T Consensus 78 ~~~l~-~~~aD~vI~VvDat~--ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L------G~pVvpi 148 (772)
T PRK09554 78 CHYIL-SGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL------GCPVIPL 148 (772)
T ss_pred HHHHh-ccCCCEEEEEecCCc--chhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh------CCCEEEE
Confidence 33332 235899999999986 23445566777778999999999999975544333334444332 4799999
Q ss_pred ccCCCCChHHHHHHHHHhh
Q 029158 175 SSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~ 193 (198)
||++++|++++.+.+.+..
T Consensus 149 SA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EeecCCCHHHHHHHHHHhh
Confidence 9999999999999998764
No 80
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=3.6e-22 Score=165.74 Aligned_cols=159 Identities=21% Similarity=0.331 Sum_probs=110.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-------eCCceEEEeCCCCccccchhHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
.+.|.|+++|.+++|||||+++|.+.. .. ....++.|.....+. .+..+.||||||+. .+.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~-~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ-IA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AFS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc-Cc-cccCCccccccceEEEEEEecCCceEEEEEECCcHH----------HHH
Confidence 467899999999999999999998863 22 222234444322111 24789999999961 222
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH--HHhccCCCC
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQ 169 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~ 169 (198)
.+. ......+|++++|+|+.++......+.+..+...++|+|+++||+|+.... .+.....+... +....+...
T Consensus 310 ~mr---~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~v 385 (742)
T CHL00189 310 SMR---SRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDT 385 (742)
T ss_pred HHH---HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCc
Confidence 222 233345999999999998887777888888887889999999999997532 22222222211 111122347
Q ss_pred CcEEeccCCCCChHHHHHHHHHhh
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++++||++|.|+++|+++|....
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhhh
Confidence 899999999999999999997754
No 81
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.89 E-value=2.4e-22 Score=143.27 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=95.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce---eEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t---~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
..+|+++|.+|+|||||+++++.... ....+... ....+.. .+..+.+|||||.. .+..+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 69 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF---VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE----------KLRPLW 69 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc---CCcCCccccceeEEEeeccCCCceEEEEEECCCcH----------hHHHHH
Confidence 45799999999999999999988632 12222111 1112211 24578999999951 122333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHH----HhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
..++. .+|++++|+|+++.-.... ..++..+ ...+.|+++|+||+|+......++....+ ...........
T Consensus 70 ~~~~~---~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~-~~~~~~~~~~~ 145 (183)
T cd04152 70 KSYTR---CTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLL-ALHELSASTPW 145 (183)
T ss_pred HHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHh-CccccCCCCce
Confidence 33333 3899999999976311111 1122222 22468999999999996432222211111 10000011125
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+++++||++|+|+++++++|.+.+..
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999887643
No 82
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=8.4e-22 Score=141.73 Aligned_cols=151 Identities=23% Similarity=0.247 Sum_probs=95.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-cceee-------------cCCCCceeE---EEEEEeCCceEEEeCCCCccccch
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW-GVVRT-------------SDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~-------------~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~ 83 (198)
.++|+++|.+++|||||+++|++.. ..... ....+++.. ..+...+..+.+|||||+.+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD---- 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH----
Confidence 4589999999999999999999631 11110 011222322 12333467899999999622
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 163 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 163 (198)
+......++. .+|++++|+|+.++.......++..+...+.|+++|+||+|+..... ....+.+.+.+..
T Consensus 78 ------~~~~~~~~~~---~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 147 (194)
T cd01891 78 ------FGGEVERVLS---MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP-EEVVDEVFDLFIE 147 (194)
T ss_pred ------HHHHHHHHHH---hcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHH
Confidence 1222333333 38999999999886544445556666666899999999999975322 2223333333322
Q ss_pred c----cCCCCCcEEeccCCCCChHHH
Q 029158 164 N----NSLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 164 ~----~~~~~~v~~~Sa~~~~gi~~l 185 (198)
. .....+++++||++|+|+.++
T Consensus 148 ~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 148 LGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred hCCccccCccCEEEeehhcccccccc
Confidence 1 122578999999999776443
No 83
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.89 E-value=5.5e-22 Score=157.09 Aligned_cols=161 Identities=23% Similarity=0.311 Sum_probs=113.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccce--eecCCCCceeEEEEEE-----------------------------eCCc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFK-----------------------------LGTK 68 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~-----------------------------~~~~ 68 (198)
...+|+++|.+++|||||+++|.+.. .. ......+.|....+.. ....
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999997641 10 0111122332222110 1357
Q ss_pred eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCCC
Q 029158 69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTVF 146 (198)
Q Consensus 69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~ 146 (198)
+.++||||+ +.+...++.....+|++++|+|++++. .....+.+..+...+ .|+++|+||+|+.+
T Consensus 82 i~liDtPGh-------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 82 VSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred EEEEECCCH-------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 899999996 455566777777799999999999876 556667777666665 46899999999987
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 147 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+...+..+.+.+.+........+++++||++|+|+++|+++|...+.
T Consensus 149 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 149 KEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 655544445555544433233578999999999999999999998654
No 84
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.89 E-value=4e-22 Score=166.72 Aligned_cols=159 Identities=23% Similarity=0.298 Sum_probs=113.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
..+.|.|+++|.+++|||||+++|.+.. +. .....++|.....+. .+..+.||||||+.. +.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~-------------F~ 351 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN-VA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEA-------------FT 351 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCC-cc-ccccCceeeeccEEEEEECCEEEEEEECCCCcc-------------ch
Confidence 4678999999999999999999998863 22 233445565543222 257899999999732 12
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH--HHhccCCCCCcE
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVM 172 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~v~ 172 (198)
..+......+|++++|+|+.++......+.+..+...++|+|+++||+|+.... .+.....+.+. +...++...+++
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~v 430 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFV 430 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEE
Confidence 222334455899999999999887888888888887899999999999997532 22222222221 111123347899
Q ss_pred EeccCCCCChHHHHHHHHHh
Q 029158 173 MVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++||++|+|+++++++|...
T Consensus 431 pvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 431 PVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EEeCCCCCCchHHHHhhhhh
Confidence 99999999999999998753
No 85
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.89 E-value=2.4e-22 Score=141.92 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=96.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.....+|+++|++|+|||||++++.+.. .....+..+.+.. .+...+..+.+|||||... +......+
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~-~~~~~~t~g~~~~-~i~~~~~~~~~~D~~G~~~----------~~~~~~~~ 78 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASED-ISHITPTQGFNIK-TVQSDGFKLNVWDIGGQRA----------IRPYWRNY 78 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCC-CcccCCCCCcceE-EEEECCEEEEEEECCCCHH----------HHHHHHHH
Confidence 3457889999999999999999999873 2222222222111 1222367789999999521 12222333
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHH-HHH---HhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELI-SLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~-~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+ ..+|++++|+|+........ ...+ ..+ ...+.|+++++||+|+....+.++..+.+. +........+++
T Consensus 79 ~---~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~--~~~~~~~~~~~~ 153 (173)
T cd04155 79 F---ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN--LHDLRDRTWHIQ 153 (173)
T ss_pred h---cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC--CcccCCCeEEEE
Confidence 3 34899999999975211111 1122 222 223689999999999976544333332221 111111124578
Q ss_pred EeccCCCCChHHHHHHHHH
Q 029158 173 MVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~ 191 (198)
++||++|+|++++++||.+
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EeECCCCCCHHHHHHHHhc
Confidence 9999999999999999975
No 86
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=7.9e-22 Score=138.61 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=97.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|++|+|||||++++.+........+..+.... ..+......+.+|||||.. .+......+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE----------RFRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHHHH
Confidence 478999999999999999999987421111111111111 1122223578999999942 123333333
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+. .+|++++++|+.+..+-.. .+++..+.. .+.|+++|+||+|+....... .+...+.... ...++++
T Consensus 73 ~~---~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~~ 144 (167)
T cd01867 73 YR---GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS--KEEGEALADE---YGIKFLE 144 (167)
T ss_pred hC---CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHHHHHHH---cCCEEEE
Confidence 33 4899999999976322222 234444443 258999999999998532211 1111111111 1468999
Q ss_pred eccCCCCChHHHHHHHHHhh
Q 029158 174 VSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+||+++.|++++++++.+.+
T Consensus 145 ~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 145 TSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998865
No 87
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=5.4e-22 Score=139.26 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=96.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|++|+|||||++++.+... . ....+..+.+.. +......+.+|||||.. .+......
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~ 70 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-T-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITSS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHHH
Confidence 5899999999999999999998732 1 111121221211 11123568999999952 12333334
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
++. .+|++++|+|+++..+-.. ..++..+.. .+.|+++|+||+|+........ +...+.... ...+++
T Consensus 71 ~~~---~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~ 142 (166)
T cd01869 71 YYR---GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY--SEAQEFADE---LGIPFL 142 (166)
T ss_pred HhC---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH--HHHHHHHHH---cCCeEE
Confidence 443 4899999999976221111 223444433 2589999999999875432211 111111111 247899
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|+|+++++++|.+.+.
T Consensus 143 ~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 143 ETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred EEECCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 88
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.89 E-value=2e-22 Score=141.12 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=95.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
+|+++|++|+|||||++++++... ...+.+++.+. .+......+.+|||||... +..+...+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~~~~ 68 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF---VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE----------FSAMRDQY 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC---CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------chHHHHHH
Confidence 799999999999999999998732 22233333221 1111235688999999632 12333344
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+.. +|++++|+|+.+...... ..+...+.. .+.|+++|+||+|+........ +..++.... ...+++
T Consensus 69 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~ 140 (164)
T smart00173 69 MRT---GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST--EEGKELARQ---WGCPFL 140 (164)
T ss_pred Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH--HHHHHHHHH---cCCEEE
Confidence 443 899999999976322111 222233322 2689999999999975432111 111111111 137899
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||+++.|+++++++|.+.+.
T Consensus 141 ~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 141 ETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EeecCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 89
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.89 E-value=2.5e-22 Score=139.78 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=96.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 102 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
+|+++|.+|+|||||++++++.. .....+..+.+. ..+...+..+.+|||||... +......++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~-- 66 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNV-ETVEYKNVSFTVWDVGGQDK----------IRPLWKHYYEN-- 66 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcce-EEEEECCEEEEEEECCCChh----------hHHHHHHHhcc--
Confidence 58999999999999999999883 222211111111 11222357899999999632 12233334333
Q ss_pred ccceEEEEEeCCCCCCcCc-HHHHHHH-H---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 103 SLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~~~~-~~~~~~~-~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
+|++++|+|+..+..... ..++..+ . ..+.|+++|+||+|+......++....+.... ......+++++||+
T Consensus 67 -~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~ 143 (158)
T cd00878 67 -TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK--ILGRRWHIQPCSAV 143 (158)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh--ccCCcEEEEEeeCC
Confidence 799999999986311111 1222222 2 24689999999999987553333333322211 12234689999999
Q ss_pred CCCChHHHHHHHHH
Q 029158 178 SGAGIRSLRTVLSK 191 (198)
Q Consensus 178 ~~~gi~~l~~~i~~ 191 (198)
+|.|+++++++|..
T Consensus 144 ~~~gv~~~~~~l~~ 157 (158)
T cd00878 144 TGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCHHHHHHHHhh
Confidence 99999999999875
No 90
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.89 E-value=3.4e-22 Score=140.45 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=98.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 102 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
+|+++|.+|+|||||++++.+. ......+..+.+. ..+...+..+.+|||||... +..+...|+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~--- 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRLDKYEVCIFDLGGGAN----------FRGIWVNYYA--- 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEECCEEEEEEECCCcHH----------HHHHHHHHHc---
Confidence 4799999999999999999876 2222222222221 22333467899999999521 1233344444
Q ss_pred ccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHH-HHHHhccCCCCCcEEecc
Q 029158 103 SLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Sa 176 (198)
.+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+.......+..+.+. +.+.......++++++||
T Consensus 66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa 145 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSA 145 (167)
T ss_pred CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEc
Confidence 3899999999986322111 223333322 3689999999999987654443333322 111111122467899999
Q ss_pred CCC------CChHHHHHHHHH
Q 029158 177 KSG------AGIRSLRTVLSK 191 (198)
Q Consensus 177 ~~~------~gi~~l~~~i~~ 191 (198)
++| .|+++.++||.+
T Consensus 146 ~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 146 IEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eeCCCCccccCHHHHHHHHhc
Confidence 998 899999999965
No 91
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.89 E-value=6.6e-22 Score=138.64 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=97.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..+|+++|++|+|||||++++++...... ..+.++.+. ........+.+|||||.. .+..+..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAITS 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHH
Confidence 46899999999999999999998742111 122222221 111123568999999952 2233344
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.++. .++++++|+|+++...... .+++..+... +.|+++|+||+|+....... .+..+..... ...++
T Consensus 71 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~ 142 (165)
T cd01868 71 AYYR---GAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TEEAKAFAEK---NGLSF 142 (165)
T ss_pred HHHC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC--HHHHHHHHHH---cCCEE
Confidence 4443 3899999999975322222 2344444332 58999999999997543211 1122222221 14789
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++||++|.|+++++++|.+.+
T Consensus 143 ~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998654
No 92
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=7.8e-22 Score=139.27 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=97.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++..... ...+.++... ..+......+.+|||||.. .+..+...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~~ 69 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF---PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQA----------EFTAMRDQ 69 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC---CCCcCCcccceEEEEEEECCEEEEEEEEeCCCch----------hhHHHhHH
Confidence 5899999999999999999998732 1222222211 1121223568999999952 22344445
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcH-HHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
++.. +|++++|+|.++..+-... +++..+.. .++|+++|+||+|+........ +..++... ..++++
T Consensus 70 ~~~~---~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~a~---~~~~~~ 141 (172)
T cd04141 70 YMRC---GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT--EEGRNLAR---EFNCPF 141 (172)
T ss_pred Hhhc---CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH--HHHHHHHH---HhCCEE
Confidence 5443 8999999999874333322 23333332 3689999999999865432211 11111111 124789
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|.|++++++++...+.
T Consensus 142 ~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 142 FETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred EEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 93
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.89 E-value=1.3e-21 Score=137.81 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=96.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
+|+++|.+|+|||||+++++++. ....+.++.. +.. ......++.+|||||. +.+..+...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV---FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ----------ERFKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHhhHHH
Confidence 68999999999999999999873 2223332221 211 1112357999999995 222333444
Q ss_pred HHhcccccceEEEEEeCCCCCCc-CcHHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
++.. +|++++|+|+++..+. ....++..+... ..|+++|+||+|+..........+..+..... ...++
T Consensus 69 ~~~~---ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~ 142 (170)
T cd04108 69 YYRG---AQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE---MQAEY 142 (170)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH---cCCeE
Confidence 4443 8999999999762111 123445444332 35689999999996543321111122222111 13678
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|.|++++++.|...+.
T Consensus 143 ~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 143 WSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 94
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=9.2e-22 Score=142.29 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=96.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE--EEEE----eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~--~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
.+|+++|.+|+|||||++++++.. ....+.+|.. +. .... ....+.+|||||.. .+..+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~---~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI---FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE----------RFGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch----------hhhhhH
Confidence 379999999999999999999873 1222222221 11 1111 13468999999952 223444
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 166 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
..++.. +|++++|+|.++..+-.. ..++..+.. .+.|+++|+||+|+...... ..+.+++......
T Consensus 68 ~~~~~~---a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~- 141 (201)
T cd04107 68 RVYYRG---AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENG- 141 (201)
T ss_pred HHHhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC-
Confidence 455544 899999999976322221 223333321 35899999999999742211 1122222222211
Q ss_pred CCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 167 LVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..+++++||++|+|+++++++|.+.+.
T Consensus 142 -~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 142 -FIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred -CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 257999999999999999999988653
No 95
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=1.1e-21 Score=155.40 Aligned_cols=158 Identities=19% Similarity=0.275 Sum_probs=105.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---C-CceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..|+|+++|.+|+|||||+|+|++.+ . ...+.+++|.+...... + ..+.++||||+.... .+...+.+..
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~-~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lve~f~~--- 269 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEAR-V-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLVAAFKA--- 269 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc-e-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHHHHHHH---
Confidence 45899999999999999999999874 3 35677777766543221 2 378999999973211 1222222222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcH----HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC-
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP- 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (198)
.+.....+|++++|+|++++...... .++..+...+.|+++|+||+|+...... . +... . ...+
T Consensus 270 -tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~----~~~~-~----~~~~~ 338 (426)
T PRK11058 270 -TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R----IDRD-E----ENKPI 338 (426)
T ss_pred -HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H----HHHH-h----cCCCc
Confidence 23344569999999999875333332 2334443346999999999999753211 1 1111 0 1234
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|+|+++++++|.+.+.
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999998764
No 96
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.89 E-value=1.2e-21 Score=139.30 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=96.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eE-----EEEE----------EeCCceEEEeCCCCccccchh
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT-----INFF----------KLGTKLCLVDLPGYGFAYAKE 84 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~-----~~~~----------~~~~~~~iiDtpG~~~~~~~~ 84 (198)
..+|+++|++|+|||||++++.+... ...+.++. .+ ..+. .....+.+|||||.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------- 73 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF---NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ------- 73 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh-------
Confidence 46899999999999999999998732 12221111 11 1111 11256899999994
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHH
Q 029158 85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEE 159 (198)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 159 (198)
+.+..+...++. .+|++++|+|+++..+-.. ..++..+.. .+.|+++|+||+|+........ +..++
T Consensus 74 ---~~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~--~~~~~ 145 (180)
T cd04127 74 ---ERFRSLTTAFFR---DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE--EQAKA 145 (180)
T ss_pred ---HHHHHHHHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH--HHHHH
Confidence 222334444444 4899999999976322122 234444443 2578999999999975422111 11222
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
..... ..+++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~~---~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 146 LADKY---GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHc---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22111 36899999999999999999998754
No 97
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.89 E-value=1.2e-21 Score=137.36 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=95.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|.+|+|||||++++.+... ...+.++. .+. .... ....+.+|||||.. .+..+..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~----------~~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF---TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE----------RYRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHH
Confidence 5899999999999999999998742 12222221 111 1111 13568999999952 1122233
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (198)
.++ ..+|++++|+|.++...-.. .+++..+.. ...|+++|+||+|+....... +....+.+. .+.+
T Consensus 69 ~~~---~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~ 139 (165)
T cd01865 69 AYY---RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQ------LGFE 139 (165)
T ss_pred HHc---cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHH------cCCE
Confidence 333 34899999999976321111 234444443 257899999999997543211 111122211 1368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|++++++++.+.+.
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 140 FFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 98
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=1e-21 Score=156.30 Aligned_cols=155 Identities=26% Similarity=0.245 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|++|+|||||+|+|++. ....+.+++++|++... ...+..+.+|||||+.+.. +... . .....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie-~--~gi~~ 275 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVE-R--LGIEK 275 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHH-H--HHHHH
Confidence 4578999999999999999999987 45667888999987542 2236789999999985431 1111 0 01112
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
.......+|++++|+|++++....+. ++..+...+.|+++|+||+|+... +. ..+.+ ....+++.+||
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~~~~------~~~~~~~~vSa 343 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL----EFFVS------SKVLNSSNLSA 343 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch----hhhhh------hcCCceEEEEE
Confidence 22333459999999999876544443 555555557999999999999754 11 11111 11367899999
Q ss_pred CCCCChHHHHHHHHHhh
Q 029158 177 KSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~ 193 (198)
++ .|++++++.+.+.+
T Consensus 344 k~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 344 KQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ec-CCHHHHHHHHHHHH
Confidence 98 57777777766644
No 99
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=7.2e-22 Score=138.65 Aligned_cols=151 Identities=16% Similarity=0.132 Sum_probs=96.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|++|+|||||++++.+... ...++++.. +. .+......+.+|||||. +.+.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF---MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ----------ERFRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCcccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHH
Confidence 5899999999999999999998732 222332221 11 11112357899999994 12233334
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.++. .+|++++|+|.++..+... ..++..+.. .+.|+++|+||+|+....... .+..++.... ...++
T Consensus 70 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~ 141 (166)
T cd04122 70 SYYR---GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT--YEEAKQFADE---NGLLF 141 (166)
T ss_pred HHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC--HHHHHHHHHH---cCCEE
Confidence 4444 3899999999986322111 233333332 257899999999997643221 1112222221 14689
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++||++|+|+++++.++...+
T Consensus 142 ~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 142 LECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999887654
No 100
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.89 E-value=8.4e-22 Score=141.91 Aligned_cols=159 Identities=14% Similarity=0.024 Sum_probs=95.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE---E--EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI---N--FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~---~--~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|.+|+|||||++++.+... ...+.+++. +. . +......+.+|||||..... ......+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f---~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~e~~~--- 72 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF---PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP--GTAGQEWMD--- 72 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC---CcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC--ccchhHHHH---
Confidence 3799999999999999999998732 222333332 21 1 11112568899999974311 011111111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
........+|++++|+|+++..+... ..+++.+.. .+.|+++|+||+|+....... .+..++..... ..
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~~~--~~ 148 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVRKS--WK 148 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHHHh--cC
Confidence 11222345999999999986322222 223333322 358999999999996532111 11122211111 25
Q ss_pred CCcEEeccCCCCChHHHHHHHHHh
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++++++||++|.|++++++.+.+.
T Consensus 149 ~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 149 CGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Confidence 789999999999999999988754
No 101
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.89 E-value=3.5e-22 Score=143.22 Aligned_cols=158 Identities=17% Similarity=0.142 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
...+|+++|++|+|||||++++.+.. .....+..+.+. ..+...+..+.++||||... .......++.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~-~~~~~~T~~~~~-~~i~~~~~~~~l~D~~G~~~----------~~~~~~~~~~ 85 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPTS-EELTIGNIKFKTFDLGGHEQ----------ARRLWKDYFP 85 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccCcce-EEEEECCEEEEEEECCCCHH----------HHHHHHHHhc
Confidence 46889999999999999999999863 221111111111 12222356789999999521 1222223333
Q ss_pred cccccceEEEEEeCCCCCCc-CcHHHHHH-HH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH---------hcc
Q 029158 100 TRVSLKRVCLLIDTKWGVKP-RDHELISL-ME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK---------ANN 165 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~-~~~~~~~~-~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~ 165 (198)
.+|++++|+|+++.-.- .....+.. ++ ..+.|+++++||+|+......++..+.+..... ...
T Consensus 86 ---~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T cd00879 86 ---EVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSG 162 (190)
T ss_pred ---cCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccC
Confidence 48999999999753111 11222222 22 235899999999999754333332222221000 001
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 166 SLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
....+++++||++|+|++++++||.+.
T Consensus 163 ~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 163 IRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 123568999999999999999999765
No 102
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.89 E-value=1e-21 Score=137.00 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=94.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
+|+++|++|+|||||++++++.. .. ....+.++.+.. +.. ....+.+|||||.. .+..+...+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~~ 69 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-FD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE----------RFRSLIPSY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHHH
Confidence 79999999999999999999874 21 222333333322 111 12468999999942 123334444
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHH-hh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~-~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+. .+|++++|+|.++..+... ..++..+. .. +.|+++|+||+|+....... .+........ .+.++++
T Consensus 70 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~--~~~~~~~~~~---~~~~~~~ 141 (161)
T cd01861 70 IR---DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS--TEEGEKKAKE---LNAMFIE 141 (161)
T ss_pred hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccC--HHHHHHHHHH---hCCEEEE
Confidence 43 3899999999976322111 23343332 22 48999999999995432111 1111111111 1378999
Q ss_pred eccCCCCChHHHHHHHHHh
Q 029158 174 VSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~ 192 (198)
+||++++|+++++++|.+.
T Consensus 142 ~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 142 TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999875
No 103
>PTZ00369 Ras-like protein; Provisional
Probab=99.89 E-value=7.4e-22 Score=141.45 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=97.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---E--EEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---I--NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~--~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||++++++... ...+.++... . .+......+.+|||||..+ +..+.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~ 70 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHF---IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE----------YSAMR 70 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC---CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc----------chhhH
Confidence 457999999999999999999998732 1222222211 1 1112234688999999633 13333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
..++.. +|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+........ ....+.... ...
T Consensus 71 ~~~~~~---~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~--~~~~~~~~~---~~~ 142 (189)
T PTZ00369 71 DQYMRT---GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVST--GEGQELAKS---FGI 142 (189)
T ss_pred HHHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHHHHHHHH---hCC
Confidence 444443 899999999986322111 233333332 2689999999999865322111 111111111 136
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++++||++|.|+++++++|.+.+.
T Consensus 143 ~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 143 PFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 104
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.88 E-value=5.9e-22 Score=139.14 Aligned_cols=149 Identities=13% Similarity=0.041 Sum_probs=95.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
.+|+++|++|+|||||+++++.... ...+. +|.... +.. ....+.+|||||... +..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~---~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF---EKKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK----------FGGLR 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CCCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChh----------hcccc
Confidence 3799999999999999999987631 11222 222211 111 235789999999632 12222
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
..++. .+|++++|+|.++..+... ..++..+... +.|+++|+||+|+.......+. .+... ....++
T Consensus 67 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~----~~~~~---~~~~~~ 136 (166)
T cd00877 67 DGYYI---GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQ----ITFHR---KKNLQY 136 (166)
T ss_pred HHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHH----HHHHH---HcCCEE
Confidence 23333 3899999999986433222 2344444433 6999999999999733211111 11111 125789
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|+|+++++++|.+.+.
T Consensus 137 ~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 137 YEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred EEEeCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999987653
No 105
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.88 E-value=1.3e-21 Score=137.02 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=97.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE--EE----EeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FF----KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~--~~----~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
.+|+++|.+|+|||||++++.... ......+.+++ .+.. .. .....+.+|||||. +.+..+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNG-AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ----------ELYSDMV 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH----------HHHHHHH
Confidence 379999999999999999998641 12223333333 1211 11 12357899999994 2233444
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH-HHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA-MQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~ 170 (198)
..++. .+|++++|+|.++..+... ..++..+... +.|+++|+||+|+....+..... ..+.. ..+.+
T Consensus 70 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~ 140 (164)
T cd04101 70 SNYWE---SPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQ------ANQLK 140 (164)
T ss_pred HHHhC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHH------HcCCe
Confidence 44443 4899999999976322111 3445555443 58999999999997543222111 11111 11367
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||+++.|++++++.+.+.+
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 141 FFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEEeCCCCCChHHHHHHHHHHh
Confidence 99999999999999999998754
No 106
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.88 E-value=1.6e-21 Score=136.24 Aligned_cols=149 Identities=21% Similarity=0.216 Sum_probs=94.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-----EEE--EeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-----NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-----~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
+|+++|.+|+|||||++++++... ...+.++. .+. .+. .....+.+|||||. +.+....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF---TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ----------EEFDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch----------HHHHHhH
Confidence 799999999999999999998732 22222221 121 111 12356899999994 2223444
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
..++. .+|++++|+|+.+...... ..++..+.. .+.|+++|+||+|+........ +..++.... .+.++
T Consensus 69 ~~~~~---~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~ 140 (162)
T cd04106 69 KAYYR---GAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN--EEAEALAKR---LQLPL 140 (162)
T ss_pred HHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH--HHHHHHHHH---cCCeE
Confidence 44444 4899999999876322111 223333332 2689999999999976432211 111221211 14689
Q ss_pred EEeccCCCCChHHHHHHHHHh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
+++||+++.|+++++++|...
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 141 FRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 107
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.88 E-value=2.3e-21 Score=158.42 Aligned_cols=158 Identities=23% Similarity=0.340 Sum_probs=104.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC-CCceeEEE--EEEe-------------------CCceEEEeCCCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTIN--FFKL-------------------GTKLCLVDLPGY 77 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~--~~~~-------------------~~~~~iiDtpG~ 77 (198)
+.|.|+++|.+++|||||+++|.+.. +. ... .++|+... +... ...+.+|||||+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~-v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSA-VA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc-cc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 57889999999999999999999873 22 122 22333211 1000 024899999996
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--------
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-------- 149 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-------- 149 (198)
. .+..+...+ ...+|++++|+|++++....+.+.+..+...++|+++++||+|+.....
T Consensus 80 e----------~f~~l~~~~---~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 80 E----------AFTNLRKRG---GALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred H----------hHHHHHHHH---HhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHH
Confidence 2 122222222 2359999999999988777777778877777899999999999974210
Q ss_pred ------HHHH-------HHHHHHHHHh------------ccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 150 ------VARR-------AMQIEESLKA------------NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 150 ------~~~~-------~~~~~~~~~~------------~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.... ...+...+.. ......+++++||++|+|+++|.++|...+
T Consensus 147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0000 0111111111 123357999999999999999999886533
No 108
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=1.8e-21 Score=143.35 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=107.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
+|+++|++|+|||||+++|.+.. ....+++++|.+.. +...+.++++|||||+.+..... ..+..+++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~ 73 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIA 73 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHH
Confidence 68999999999999999999874 44667777775433 33447789999999975432111 122334444
Q ss_pred cccccceEEEEEeCCCCCCc------------------------------------------CcHHH-HHHHHh------
Q 029158 100 TRVSLKRVCLLIDTKWGVKP------------------------------------------RDHEL-ISLMER------ 130 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~------------------------------------------~~~~~-~~~~~~------ 130 (198)
....+|++++|+|+++.... .+.+. ...+.+
T Consensus 74 ~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~ 153 (233)
T cd01896 74 VARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNA 153 (233)
T ss_pred hhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeE
Confidence 55669999999998652210 11111 111111
Q ss_pred ---------------------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHH
Q 029158 131 ---------------------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 189 (198)
Q Consensus 131 ---------------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i 189 (198)
...|+++|+||+|+...++... +.. ..+++++||+++.|++++++.|
T Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~--------~~~----~~~~~~~SA~~g~gi~~l~~~i 221 (233)
T cd01896 154 DVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL--------LAR----QPNSVVISAEKGLNLDELKERI 221 (233)
T ss_pred EEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH--------Hhc----CCCEEEEcCCCCCCHHHHHHHH
Confidence 1258999999999987554431 111 2468999999999999999999
Q ss_pred HHhhccccC
Q 029158 190 SKIARFAKV 198 (198)
Q Consensus 190 ~~~~~~~r~ 198 (198)
.+.+..+||
T Consensus 222 ~~~L~~irv 230 (233)
T cd01896 222 WDKLGLIRV 230 (233)
T ss_pred HHHhCcEEE
Confidence 999999986
No 109
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=1.3e-21 Score=143.05 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=99.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
++....+|+++|.+|+|||||+++++.........+..+.+.. ..+.. ....+.+|||||... +..+
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~ 78 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGL 78 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhh
Confidence 3456679999999999999999998876322222222222211 11211 235789999999522 2233
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
...|+. .+|++++|+|.++..+-.. ..|+..+.. .+.|+++|+||+|+.......+ .+ +... ....+
T Consensus 79 ~~~~~~---~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~---~~-~~~~---~~~~~ 148 (219)
T PLN03071 79 RDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV-TFHR---KKNLQ 148 (219)
T ss_pred hHHHcc---cccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHH---HH-HHHH---hcCCE
Confidence 334444 3899999999987322221 234444442 2689999999999964221111 11 1111 12478
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||++|.|+++++++|.+.+
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 110
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=1.1e-21 Score=140.69 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=95.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
+|+++|.+|+|||||+++|+.... ...+.+++.+. .+......+.+|||||.. .+..+...+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF---VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE----------EYTALRDQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC---CccCCCchHhhEEEEEEECCEEEEEEEEECCCch----------hhHHHHHHH
Confidence 589999999999999999997631 22233333211 111122458899999952 123333344
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
+.. +|++++|+|.++..+... ..++..+.. .+.|+++|+||+|+........ ...++.... .+.+
T Consensus 68 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~~---~~~~ 139 (190)
T cd04144 68 IRE---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST--EEGAALARR---LGCE 139 (190)
T ss_pred HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH--HHHHHHHHH---hCCE
Confidence 444 899999999976322222 234444432 3589999999999965332211 111111111 1368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|++++++++.+.+.
T Consensus 140 ~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 140 FIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 111
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.88 E-value=1.8e-21 Score=136.08 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=96.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc---eeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~---t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|++|+|||||++++++.+......+..+. +....+...+..+.+|||||.. .+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE----------RYRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHHHHh
Confidence 58999999999999999999998422212222221 1222233334578999999941 1222233333
Q ss_pred hcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 99 STRVSLKRVCLLIDTKWGVK-PRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
. .+|++++|+|+++... .....++..+... +.|+++++||+|+....... .+...+..... ..+++++
T Consensus 72 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~~~ 143 (163)
T cd01860 72 R---GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS--TEEAQEYADEN---GLLFFET 143 (163)
T ss_pred c---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC--HHHHHHHHHHc---CCEEEEE
Confidence 3 3899999999975321 1123344444333 58899999999987432111 11122222221 3679999
Q ss_pred ccCCCCChHHHHHHHHHhh
Q 029158 175 SSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~ 193 (198)
||++|.|++++++++.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 144 SAKTGENVNELFTEIAKKL 162 (163)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
No 112
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.9e-22 Score=159.02 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=121.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCcc-ccchhHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGF-AYAKEEVKDAWEELVKE 96 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~-~~~~~~~~~~~~~~~~~ 96 (198)
..+|+++|.||+|||||+|+|++.+ ..+++++++|.+.. +...+..++++|+||.-+ +....+ +...++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D-----E~Var~ 75 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED-----EKVARD 75 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch-----HHHHHH
Confidence 4569999999999999999999985 88999999998754 344467899999999633 111111 444555
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
|+. ...+|+++-|+||++ -+...++.-++.+.+.|+++++|++|.......+-..+.+++.+ ++|++++||
T Consensus 76 ~ll-~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L------GvPVv~tvA 146 (653)
T COG0370 76 FLL-EGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLL------GVPVVPTVA 146 (653)
T ss_pred HHh-cCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHh------CCCEEEEEe
Confidence 554 235799999999986 45556666667778999999999999987665554556666655 599999999
Q ss_pred CCCCChHHHHHHHHHhh
Q 029158 177 KSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~ 193 (198)
++|+|++++++.+.+..
T Consensus 147 ~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 147 KRGEGLEELKRAIIELA 163 (653)
T ss_pred ecCCCHHHHHHHHHHhc
Confidence 99999999999997644
No 113
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-22 Score=139.37 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=107.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC---ceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+++|||||+-++....+.....+..+ .|+.+........+.||||.|. +.+..+..
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ----------ERy~slap 72 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ----------ERYHSLAP 72 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCc----------cccccccc
Confidence 3567899999999999999999998742221122111 1222223223467889999995 34566777
Q ss_pred HHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhhC---CcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQ---TKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~---~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 169 (198)
.|+++ ++++++|+|..+.-+ ..-+.|++.|++.. +-+.+|+||+|+..... .++.....++ .+.
T Consensus 73 MYyRg---A~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~-------~gl 142 (200)
T KOG0092|consen 73 MYYRG---ANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAES-------QGL 142 (200)
T ss_pred ceecC---CcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHh-------cCC
Confidence 78877 889999999986222 12245666666543 33556999999987432 2232222222 368
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
.++++|||+|.|+++++..|.+.++..
T Consensus 143 l~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 143 LFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred EEEEEecccccCHHHHHHHHHHhccCc
Confidence 999999999999999999999887653
No 114
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.88 E-value=1.4e-21 Score=155.99 Aligned_cols=153 Identities=21% Similarity=0.260 Sum_probs=107.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccce-----------------------------eecCCCCceeEEEEEE---eC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LG 66 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~---~~ 66 (198)
....+|+++|++++|||||+++|+...... .....+++|.+..... .+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 355789999999999999999998542100 0111466777765433 36
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC--CCCcCcHHHHHHHHhhCC-cEEEEEeccC
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERSQT-KYQVVLTKTD 143 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~--~~~~~~~~~~~~~~~~~~-p~iiv~nK~D 143 (198)
..+.+|||||+ ..+...++.....+|++++|+|+++ ++...+.+.+..+...+. |+++++||+|
T Consensus 84 ~~i~liDtpG~-------------~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~D 150 (425)
T PRK12317 84 YYFTIVDCPGH-------------RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMD 150 (425)
T ss_pred eEEEEEECCCc-------------ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccc
Confidence 78999999996 2233344555566999999999998 777777777777766665 6899999999
Q ss_pred CCCcH--HHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158 144 TVFPI--DVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 144 l~~~~--~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~ 184 (198)
+.... ......+++++.+..... ...+++++||++|+|+++
T Consensus 151 l~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 151 AVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 97532 233444555555443321 136899999999999986
No 115
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.88 E-value=2.9e-21 Score=135.84 Aligned_cols=155 Identities=17% Similarity=0.099 Sum_probs=96.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|.+|+|||||++++.+...........+.+.. .........+.+|||||.. .+..+...+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 73 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSITRSY 73 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHHH
Confidence 468999999999999999999987421111111111111 1122223578999999941 122333334
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+. .+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+....... .++....... ...++++
T Consensus 74 ~~---~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~e 145 (168)
T cd01866 74 YR---GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAKE---HGLIFME 145 (168)
T ss_pred hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHHHHHHH---cCCEEEE
Confidence 43 4899999999985222222 234444443 268999999999997432211 1112222221 1467999
Q ss_pred eccCCCCChHHHHHHHHHhh
Q 029158 174 VSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+||++++|+++++.++.+.+
T Consensus 146 ~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 146 TSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 116
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.88 E-value=1.9e-21 Score=153.98 Aligned_cols=163 Identities=21% Similarity=0.277 Sum_probs=115.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEE-----------------e------------CCc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------L------------GTK 68 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~-----------------~------------~~~ 68 (198)
....+|+++|..++|||||+.+|.+.. .........+.|.+..+.. . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 445789999999999999999997641 0011111234444432210 0 246
Q ss_pred eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhCC-cEEEEEeccCCCC
Q 029158 69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVF 146 (198)
Q Consensus 69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~ 146 (198)
+.+|||||+ ..+...++.....+|++++|+|+.++. .....+.+..+...+. |+++|+||+|+.+
T Consensus 87 i~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 87 VSFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 899999996 456667888878899999999999876 4555666666666564 6899999999987
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 147 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
........+.+++.+........+++++||++|+|+++|+++|...+.
T Consensus 154 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 154 KERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred chhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 655444445555444332233578999999999999999999988654
No 117
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.88 E-value=1.1e-21 Score=139.68 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=95.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|.+|+|||||++++++... ...+.+|. .+. ........+.+|||+|.. .+..+..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f---~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~~~~ 67 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF---DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR----------EFINMLP 67 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch----------hHHHhhH
Confidence 3799999999999999999998732 22233222 121 111123578999999952 1233333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCc---HHHHHHHHHHHHHHHhccCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP---IDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~ 168 (198)
.++. .+|++++|+|.++..+..+ .+++..+... ..| ++|+||+|+... .+.....+..++.... .+
T Consensus 68 ~~~~---~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~---~~ 140 (182)
T cd04128 68 LVCN---DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA---MK 140 (182)
T ss_pred HHCc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH---cC
Confidence 3333 4899999999976322222 2344444432 356 689999999632 1111122222222222 23
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+++++||++|.|++++++++.+.+-.
T Consensus 141 ~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 141 APLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999876543
No 118
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=1.4e-21 Score=140.03 Aligned_cols=156 Identities=17% Similarity=0.086 Sum_probs=98.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++.+... ...+.++... .........+.+|||||... +..+...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~l~~~ 67 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF---PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE----------FDRLRSL 67 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCccCCcceeeeEEEEEECCEEEEEEEEECCCChh----------ccccccc
Confidence 4799999999999999999998742 1222222211 11111235789999999522 1222222
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~~ 162 (198)
++ ..+|++++|+|.++..+... ..++..+... +.|+++|+||+|+.......... +...+...
T Consensus 68 ~~---~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (189)
T cd04134 68 SY---ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK 144 (189)
T ss_pred cc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 33 34899999999876322222 2355555433 68999999999998654332211 11111111
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
. ...++++++||++|.|++++++++.+.+-.
T Consensus 145 ~--~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 145 R--INALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred H--cCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 1 113679999999999999999999987643
No 119
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.88 E-value=1.3e-21 Score=136.51 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=95.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|++|+|||||+++|.+........+..+.+.... +......+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHh
Confidence 3799999999999999999998742222222222222221 111235789999999521 122223333
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+.+|++++++|+++..+... ..++..+.. .+.|+++|+||+|+.......+....+... ...++++
T Consensus 71 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~ 141 (161)
T cd01863 71 ---RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK------HNMLFIE 141 (161)
T ss_pred ---CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH------cCCEEEE
Confidence 34899999999876322222 223333332 368899999999997433111111122111 1478999
Q ss_pred eccCCCCChHHHHHHHHHh
Q 029158 174 VSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~ 192 (198)
+||++|+|++++++++.+.
T Consensus 142 ~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 142 TSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 120
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=4.1e-21 Score=134.28 Aligned_cols=153 Identities=18% Similarity=0.136 Sum_probs=96.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EE-EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--IN-FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~-~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|++|+|||||++++.+... .....+..+.+ .. +.. ....+.+|||||.. .+......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 3799999999999999999998731 11111111111 11 111 12578899999941 22333334
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
++. .+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+....... .+..++.... .+.+++
T Consensus 69 ~~~---~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~--~~~~~~~~~~---~~~~~~ 140 (164)
T smart00175 69 YYR---GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS--REEAEAFAEE---HGLPFF 140 (164)
T ss_pred HhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC--HHHHHHHHHH---cCCeEE
Confidence 443 4899999999986322222 224444433 358999999999987633211 0111122211 136799
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++++|+++++++|.+.+.
T Consensus 141 e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 141 ETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred EEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998763
No 121
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=3.7e-21 Score=138.08 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=96.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE--EEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~--~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|.+|+|||||++++.+... ....+..++. +. .... ....+.+|||||.. .+.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF--LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhH
Confidence 3799999999999999999998731 1122222221 11 1111 23578999999941 1222233
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.++. .+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+........ +..+..... .+.++
T Consensus 69 ~~~~---~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~~~l~~~---~~~~~ 140 (191)
T cd04112 69 AYYR---DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKR--EDGERLAKE---YGVPF 140 (191)
T ss_pred HHcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCH--HHHHHHHHH---cCCeE
Confidence 3433 4899999999976322111 233444433 2589999999999964321110 111111111 14689
Q ss_pred EEeccCCCCChHHHHHHHHHhhccc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
+++||++|+|+++++++|.+.+...
T Consensus 141 ~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 141 METSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999877544
No 122
>PRK12736 elongation factor Tu; Reviewed
Probab=99.88 E-value=4.2e-21 Score=151.51 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=119.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-----c---------eeecCCCCceeEEEEEE---eCCceEEEeCCCCcccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-----V---------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-----~---------~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~ 81 (198)
....+|+++|+.++|||||+++|++... . .......++|.+..... .+.++.++||||+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh---- 85 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH---- 85 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH----
Confidence 3457899999999999999999986310 0 01111345666554222 3567999999996
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHHH-HHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE 159 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~-~~~~~~~ 159 (198)
.++...++.....+|++++|+|+..+....+.+++..+...++| +|+++||+|+.+.++..+ ..+++.+
T Consensus 86 ---------~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 86 ---------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred ---------HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 45666777777789999999999998888888888888888898 678999999986544332 3345665
Q ss_pred HHHhccC--CCCCcEEeccCCCC--------ChHHHHHHHHHhhc
Q 029158 160 SLKANNS--LVQPVMMVSSKSGA--------GIRSLRTVLSKIAR 194 (198)
Q Consensus 160 ~~~~~~~--~~~~v~~~Sa~~~~--------gi~~l~~~i~~~~~ 194 (198)
.+..... ...|++++||.+|. ++++|++.+.+.++
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 5544322 24789999999983 67899988887654
No 123
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=9.6e-22 Score=137.53 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=95.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||+++++.... ...+.++..+ ..+......+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ----------FASMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCchhheEEEEEEECCEEEEEEEEECCCccc----------ccchHHH
Confidence 5799999999999999999998732 1222233221 11111234588999999522 1233334
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQP 170 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~ 170 (198)
++.. +|++++|+|.++.-+-.+ ..++..+.. .+.|+++|+||+|+........ ....+.+. .+.+
T Consensus 69 ~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~ 139 (163)
T cd04176 69 YIKN---GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE------WGCP 139 (163)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH------hCCE
Confidence 4443 899999999976321111 233333332 3689999999999965332111 11222211 1368
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||++|.|++++++++.+.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 140 FMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998764
No 124
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.88 E-value=1.8e-21 Score=140.56 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=97.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE---EE--EEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI---NF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~---~~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
...+|+++|++|+|||||++++.+... ...+.+|. .+. .+ ......+.+|||||.. .+..+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF---SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE----------RFRTI 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCccccceeEEEEEEECCEEEEEEEEeCCCch----------hHHHH
Confidence 467999999999999999999998731 11222221 111 11 1123468899999952 12333
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
...++.. +|++++|+|+++..+-.. ..++..+... ..|+++|+||+|+....... .+...+.... ...+
T Consensus 72 ~~~~~~~---a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~--~~~~~~~~~~---~~~~ 143 (199)
T cd04110 72 TSTYYRG---THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE--TEDAYKFAGQ---MGIS 143 (199)
T ss_pred HHHHhCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC--HHHHHHHHHH---cCCE
Confidence 3444443 899999999976322111 2344444432 58999999999997543221 1111111111 1378
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||++|.|+++++++|...+
T Consensus 144 ~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 144 LFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 125
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.88 E-value=3.1e-21 Score=133.81 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=94.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|++|+|||||++++.+...........+.+....... ....+.+||+||.. .+......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITPSYY 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHHHHh
Confidence 4799999999999999999998741111111111111111112 24678999999951 1223333343
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
. .+|++++++|+++...... ..++..+... +.|+++++||+|+..+... ..+.+.+.... ...+++++
T Consensus 71 ~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~ 142 (159)
T cd00154 71 R---GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKE---NGLLFFET 142 (159)
T ss_pred c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHH---cCCeEEEE
Confidence 3 3899999999976211111 2344444443 4899999999999632211 11222222222 25789999
Q ss_pred ccCCCCChHHHHHHHH
Q 029158 175 SSKSGAGIRSLRTVLS 190 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~ 190 (198)
||+++.|+++++++|.
T Consensus 143 sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 143 SAKTGENVEELFQSLA 158 (159)
T ss_pred ecCCCCCHHHHHHHHh
Confidence 9999999999999986
No 126
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.88 E-value=5.6e-22 Score=146.88 Aligned_cols=163 Identities=21% Similarity=0.249 Sum_probs=123.0
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
.++++-.+|+++|+|++|||||++.|.+.+ .++..|+.||... .+-+.+.+++++|+||+.+..... ..
T Consensus 58 V~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g------~g 129 (365)
T COG1163 58 VKKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSG------RG 129 (365)
T ss_pred EeccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccC------CC
Confidence 356777899999999999999999999986 7889999988653 466778999999999987654433 22
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCc------------------------------------------H--------
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD------------------------------------------H-------- 122 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~------------------------------------------~-------- 122 (198)
.-++.+...+.||++++|+|+..+....+ .
T Consensus 130 rG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~ 209 (365)
T COG1163 130 RGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILR 209 (365)
T ss_pred CcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHH
Confidence 23467777788999999999986433111 0
Q ss_pred ------------------HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158 123 ------------------ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182 (198)
Q Consensus 123 ------------------~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi 182 (198)
++.+.+... -+|.+.|+||.|+...++.+. +.+. ...+++||+.+.|+
T Consensus 210 Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~----l~~~--------~~~v~isa~~~~nl 277 (365)
T COG1163 210 EYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELER----LARK--------PNSVPISAKKGINL 277 (365)
T ss_pred HhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHH----HHhc--------cceEEEecccCCCH
Confidence 111222211 259999999999998554432 2222 37899999999999
Q ss_pred HHHHHHHHHhhccccC
Q 029158 183 RSLRTVLSKIARFAKV 198 (198)
Q Consensus 183 ~~l~~~i~~~~~~~r~ 198 (198)
++|.+.|.+.+..+||
T Consensus 278 d~L~e~i~~~L~liRV 293 (365)
T COG1163 278 DELKERIWDVLGLIRV 293 (365)
T ss_pred HHHHHHHHHhhCeEEE
Confidence 9999999999999886
No 127
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.88 E-value=2.1e-21 Score=142.06 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=99.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEEE---EEEeCCceE
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKLGTKLC 70 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~---~~~~~~~~~ 70 (198)
+|+++|++++|||||+.+|+..... .......++|.+.. +...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999743100 00111234555533 333477899
Q ss_pred EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhC-CcEEEEEecc
Q 029158 71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVLTKT 142 (198)
Q Consensus 71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~-~p~iiv~nK~ 142 (198)
++||||+ ..+...++.....+|++++|+|+..+ ......+.+......+ .|+++++||+
T Consensus 81 liDtpG~-------------~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGH-------------RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred EEECCCh-------------HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 9999996 23344555666679999999999873 2334445555555555 6899999999
Q ss_pred CCCC----cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChH
Q 029158 143 DTVF----PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIR 183 (198)
Q Consensus 143 Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~ 183 (198)
|+.. ....++..+.+++.+..... ...+++++||++|+|++
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9984 23345555666555554322 24789999999999986
No 128
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=1.8e-21 Score=138.35 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=98.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
+...+|+++|.+|+|||||+.++..... ...+.+|... ..+......+.+|||+|. +.+..+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f---~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~----------e~~~~~ 69 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGS----------PYYDNV 69 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCC---CCccCCceeeeeEEEEEECCEEEEEEEEECCCc----------hhhHhh
Confidence 4567899999999999999999998732 2333333221 112122457899999994 122333
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHH-H---------HHHHHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDV-A---------RRAMQIEE 159 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~-~---------~~~~~~~~ 159 (198)
...++.. +|++++|+|.++..+-.. ..|+..+... +.|+++|+||+|+...... . -..++.++
T Consensus 70 ~~~~~~~---ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 70 RPLSYPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred hhhhcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 3344443 899999999987433222 2345555433 6899999999998642110 0 00111222
Q ss_pred HHHhccCCC-CCcEEeccCCCCC-hHHHHHHHHHh
Q 029158 160 SLKANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKI 192 (198)
Q Consensus 160 ~~~~~~~~~-~~v~~~Sa~~~~g-i~~l~~~i~~~ 192 (198)
.... .+ .+++++||++|+| ++++|+.+.+.
T Consensus 147 ~a~~---~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 147 MAKQ---IGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHH---cCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 2111 13 4899999999998 99999988774
No 129
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.88 E-value=2.8e-21 Score=153.84 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=120.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc-eeecCCCCceeEEEEEE---------------------------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFK--------------------------------- 64 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~--------------------------------- 64 (198)
....+|+++|...+|||||+.+|.+.+.. ...+-..+.|.+..|..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 34568999999999999999999975310 01111223332222110
Q ss_pred ---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcCcHHHHHHHHhhCC-cEEEEE
Q 029158 65 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVL 139 (198)
Q Consensus 65 ---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~-p~iiv~ 139 (198)
....+.|+||||+ ..+.+.++.....+|.+++|+|+.++ ...+..+.+..+...+. ++|+|+
T Consensus 112 ~~~~~~~i~~IDtPGH-------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred cccccceEeeeeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 0236899999996 66777888888889999999999985 56666777776666665 588999
Q ss_pred eccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 140 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 140 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
||+|+.+....++..+.+++.+........+++++||++|+|+++|++.|.+.++.
T Consensus 179 NKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 179 NKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 99999987776676777777665444457899999999999999999999976543
No 130
>PLN03118 Rab family protein; Provisional
Probab=99.88 E-value=5.7e-21 Score=139.13 Aligned_cols=159 Identities=19% Similarity=0.090 Sum_probs=99.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-E--EEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-F--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
+.....+|+++|.+|+|||||+++|++.. .....+..+...... + ......+.+|||||... +..+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~ 78 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTL 78 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHH
Confidence 44456899999999999999999999873 222222221111111 1 11235789999999522 2333
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
...++.. +|++++|+|.++....... .+...+.. .+.|+++|+||+|+........ +........ .
T Consensus 79 ~~~~~~~---~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~~~~~~~---~ 150 (211)
T PLN03118 79 TSSYYRN---AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEGMALAKE---H 150 (211)
T ss_pred HHHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHHHHHHHH---c
Confidence 3444443 8999999999863222221 12222322 2578999999999975432211 111111111 1
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..+++++||+++.|+++++++|...+.
T Consensus 151 ~~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 151 GCLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987653
No 131
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.88 E-value=1.9e-21 Score=135.74 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=95.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|++|+|||||+++|.+........+..+.... ..+......+.+|||||.. .+......++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE----------RFRSVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH----------HHHHhHHHHh
Confidence 37999999999999999999987421111111111111 1111123568999999952 1223333333
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
. .+|++++|+|+++...... ..++..+. ..+.|+++|+||+|+....... .+......... +.+++++
T Consensus 71 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~~~ 142 (161)
T cd04113 71 R---GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVT--FLEASRFAQEN---GLLFLET 142 (161)
T ss_pred c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCC--HHHHHHHHHHc---CCEEEEE
Confidence 3 4899999999987432222 23334333 2368999999999997533211 11122222211 3789999
Q ss_pred ccCCCCChHHHHHHHHHh
Q 029158 175 SSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~ 192 (198)
||+++.|++++++++.+.
T Consensus 143 Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 143 SALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 132
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=2.1e-21 Score=135.72 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=94.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|++|+|||||+++++.... ...+.+++.+ .........+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF---VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED----------YAAIRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---ccccCCcchhhEEEEEEECCEEEEEEEEECCChhh----------hhHHHHH
Confidence 3799999999999999999998632 2233333322 11111235689999999522 1233333
Q ss_pred HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh----hCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccCCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~ 170 (198)
++. .+|++++++|..+.-.-. -..++..+.. .+.|+++|+||+|+..... .......+.+. ...+
T Consensus 68 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~------~~~~ 138 (164)
T cd04139 68 YHR---SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ------WGVP 138 (164)
T ss_pred Hhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH------hCCe
Confidence 333 378999999987521111 1223222222 4799999999999976221 11111122221 1368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++++|++++++++.+.+.
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 139 YVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 133
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=144.53 Aligned_cols=157 Identities=21% Similarity=0.215 Sum_probs=114.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...|.+||.|++|||||+++|...+ ..+.+|+.||...++.. ...++++-|.||+.+..+.. .-+--.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~ 267 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGYK 267 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccHH
Confidence 3578999999999999999999985 68999999997654322 23459999999997765444 333446
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHH----HHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
|+++...++.++||+|.+......-.+ +...++.+ +.|.++|+||+|+++.+ +..++.+.+.++
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq----- 340 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQ----- 340 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcC-----
Confidence 777777799999999998752222222 22333322 68999999999997433 233455555543
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHh
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
...++++||+.++|+.++++.|.+.
T Consensus 341 ~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 341 NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CCcEEEeeeccccchHHHHHHHhhc
Confidence 2469999999999999999998765
No 134
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.88 E-value=2.6e-21 Score=136.28 Aligned_cols=153 Identities=13% Similarity=0.045 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||++++++.+... ...+..+.+ ..+......+.+|||||. +.+..+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~ 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ----------ERFRSLR 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCc--CcCCceeeEEEEEEEEECCeEEEEEEEeCCCh----------HHHHHhH
Confidence 45789999999999999999999874211 111111111 112222356889999994 2223344
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 166 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
..++. .+|++++++|..+..+... ..+...+.. .+.|+++|+||+|+...... .+.+++.....
T Consensus 72 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~-- 143 (170)
T cd04116 72 TPFYR---GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVS---TEEAQAWCREN-- 143 (170)
T ss_pred HHHhc---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccC---HHHHHHHHHHC--
Confidence 44444 3899999999876322222 223332221 25799999999999632111 12222222222
Q ss_pred CCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 167 LVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
...+++++||++|.|++++++++.+.
T Consensus 144 ~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 144 GDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 13579999999999999999998764
No 135
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.2e-21 Score=132.33 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=110.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..+|+++|..++||||||++++... .-.+|.. |..+. +.....++++|||+| ++.+..+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~---fd~~YqA-TIGiDFlskt~~l~d~~vrLQlWDTAG----------QERFrsl 87 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDK---FDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL 87 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhh---hcccccc-eeeeEEEEEEEEEcCcEEEEEEEeccc----------HHHHhhh
Confidence 3789999999999999999999873 3334433 32222 222357899999999 4777888
Q ss_pred HHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
...|++. +.++++|+|.++.- -+...+|++.+... ++-+++|+||.||.++.+......... . ...+
T Consensus 88 ipsY~Rd---s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k--A---kel~ 159 (221)
T KOG0094|consen 88 IPSYIRD---SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK--A---KELN 159 (221)
T ss_pred hhhhccC---CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHH--H---HHhC
Confidence 8888887 78899999987632 23345667666544 256778999999999865432222211 1 1124
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
.-++++||+.|+|+.++|..|...+...
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 6799999999999999999988776543
No 136
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=1.4e-21 Score=139.76 Aligned_cols=154 Identities=15% Similarity=0.077 Sum_probs=95.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-E--EEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~--~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|.+|+|||||++++++... ...+.++... . .... ....+.+|||||.. .+..+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF---PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE----------EYDRLRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC---CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch----------hHHHHHH
Confidence 4799999999999999999998732 2223222211 1 1111 12468999999952 1122222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh--hCCcEEEEEeccCCCCcHHHHH--HHHHHHHHHHhccCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDVAR--RAMQIEESLKANNSLVQ 169 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~ 169 (198)
.++ ..+|++++|+|.++..+.... .++..+.. .+.|+++|+||+|+........ .....++..... +.
T Consensus 68 ~~~---~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~---~~ 141 (187)
T cd04132 68 LSY---PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ---GA 141 (187)
T ss_pred HhC---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc---CC
Confidence 333 348999999999863222221 23333332 2689999999999975331100 011222222111 23
Q ss_pred -CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 170 -PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 170 -~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++++||++|.|++++++.+.+.+.
T Consensus 142 ~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 142 FAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred cEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999987654
No 137
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.88 E-value=4e-21 Score=135.42 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=93.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce---eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|++|+|||||++++.+...........+.+ ...........+.+|||||.. .+..+...++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~ 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE----------RFQSLGVAFY 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHhHHHHHh
Confidence 379999999999999999999873111111111111 111121223467899999952 1223333343
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
+.+|++++++|+.+...... ..+.+.+ .. .+.|+++|+||+|+..+.... .+.++..... ....+
T Consensus 71 ---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~--~~~~~ 143 (172)
T cd01862 71 ---RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVS--TKKAQQWCQS--NGNIP 143 (172)
T ss_pred ---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccC--HHHHHHHHHH--cCCce
Confidence 33899999999986322111 1222222 11 168999999999998422110 1112222211 11368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|+++++++|.+.+.
T Consensus 144 ~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 144 YFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 138
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.87 E-value=2.5e-21 Score=137.03 Aligned_cols=153 Identities=12% Similarity=0.020 Sum_probs=96.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||+.++..... ...+.+|..+ .........+.+|||+|... +..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f---~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED----------YDRLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc----------hhhhhhh
Confidence 5799999999999999999998732 2334444322 11111235788999999632 1222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~~ 162 (198)
++. .+|++++|+|.++..+-... .|+..+... +.|+++|+||+|+....+..+.. +..++...
T Consensus 69 ~~~---~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~ 145 (175)
T cd01874 69 SYP---QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR 145 (175)
T ss_pred hcc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH
Confidence 333 38999999999864322222 344445432 68999999999996543221111 11111111
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
. ....+++++||++|.|++++++.+...
T Consensus 146 ~--~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 146 D--LKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred H--hCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 1 113679999999999999999988764
No 139
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=8.3e-21 Score=138.65 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=99.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
+...+|+++|++|+|||||+++|.+..... ...+....+. .+......+.+|||||. +.+..+
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~--~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~----------~~~~~~ 77 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL--ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----------ERYRAI 77 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCc----------HHHHHH
Confidence 345799999999999999999999874211 1111111121 11112357899999994 223344
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV 168 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 168 (198)
...++.. ++++++|+|.++...... ..++..+.. .+.|+++|+||+|+....... +....+.. ...
T Consensus 78 ~~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~------~~~ 148 (216)
T PLN03110 78 TSAYYRG---AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE------KEG 148 (216)
T ss_pred HHHHhCC---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH------HcC
Confidence 4444443 899999999976322222 234444443 368999999999986543221 11122221 125
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+++++||++|+|++++++++...+.
T Consensus 149 ~~~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 149 LSFLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987653
No 140
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.87 E-value=6.7e-21 Score=139.14 Aligned_cols=153 Identities=18% Similarity=0.134 Sum_probs=97.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE---EEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN---FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~---~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
.+|+++|.+|+|||||+++|.+.. ....+.+|. .+.. +.. ....+.+|||||.. .+..+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~---~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG---FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC---CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHH
Confidence 379999999999999999999873 222333222 2221 111 13568899999942 223444
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh------CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~------~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
..++. .+|++++|+|.++..+... .+++..+... +.|+++|+||+|+....... .+..++.... .
T Consensus 68 ~~~~~---~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~~~---~ 139 (215)
T cd04109 68 DKYIY---GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK--DDKHARFAQA---N 139 (215)
T ss_pred HHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC--HHHHHHHHHH---c
Confidence 44544 3899999999986322222 2344444432 35799999999997533211 1111111111 1
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+++++||++|+|++++++++.+.+..
T Consensus 140 ~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 140 GMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3679999999999999999999887643
No 141
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.87 E-value=8.4e-21 Score=132.62 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=93.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--E-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--I-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
+|+++|++|+|||||++++.+.... ..+ .+|.. . .+......+.+|||||.. .+.....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~---~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH---SSH-ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE----------RYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC---CCC-CCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------hHHhhHH
Confidence 6999999999999999999987421 111 12221 1 111123568899999952 1233333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (198)
.++. .+|++++|+|.++.-+... ..++..+.. .+.|+++|+||+|+....... +....+.+. . ..+
T Consensus 68 ~~~~---~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~----~--~~~ 138 (161)
T cd04117 68 QYYR---RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE----Y--GMD 138 (161)
T ss_pred HHhc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH----c--CCE
Confidence 4443 4899999999876322111 233444333 258999999999997543221 111222211 1 368
Q ss_pred cEEeccCCCCChHHHHHHHHHh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++++||+++.|+++++++|.+.
T Consensus 139 ~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 139 FFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999764
No 142
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.87 E-value=2.6e-21 Score=139.10 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=96.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|.+|+|||||++++++... . ...+.++... ...... ...+.+|||||... +..+..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-L-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER----------YEAMSR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-C-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhH
Confidence 3799999999999999999998742 1 1223333321 111111 24577999999521 122333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHH-HH-HHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDV-AR-RAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 170 (198)
.++. .+|++++|+|.++..+... ..++..+... +.|+++|+||+|+...... .. ..+.+++.... ...+
T Consensus 69 ~~~~---~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~---~~~~ 142 (193)
T cd04118 69 IYYR---GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE---IKAQ 142 (193)
T ss_pred hhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH---cCCe
Confidence 3333 3899999999976322111 2455555543 5899999999998653211 01 01222222221 2467
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||++++|+++++++|.+.+
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 143
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=139.72 Aligned_cols=168 Identities=23% Similarity=0.273 Sum_probs=118.5
Q ss_pred CcCCCC--CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHH
Q 029158 12 VSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEV 86 (198)
Q Consensus 12 ~~~~~~--~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~ 86 (198)
.+..+| ++..+.|++.|+||+|||||++.+.+.+ .++.+||.||+.+.+.+. ..+++++||||+-+..-.+..
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN 234 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence 344455 3578999999999999999999999986 889999999999886665 458999999998775432221
Q ss_pred HHHHHHHHHHHHhcc-cccceEEEEEeCCC--CCCcC-cHHHHHHHHh-hCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158 87 KDAWEELVKEYVSTR-VSLKRVCLLIDTKW--GVKPR-DHELISLMER-SQTKYQVVLTKTDTVFPIDVARRAMQIEESL 161 (198)
Q Consensus 87 ~~~~~~~~~~~~~~~-~~~d~vi~v~d~~~--~~~~~-~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (198)
....+.+.+. ...++|+|++|++. |.+-. ...++..+.. .+.|+++|+||+|..+.+..++....+....
T Consensus 235 -----~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~ 309 (346)
T COG1084 235 -----EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEG 309 (346)
T ss_pred -----HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhc
Confidence 1122222222 23678999999987 33322 2344555554 3689999999999998777666555544321
Q ss_pred HhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
......+++..+.+++.+.+.+...
T Consensus 310 ------~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 310 ------GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ------cccccceeeeehhhHHHHHHHHHHH
Confidence 2335678888889989888776655
No 144
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.87 E-value=3.4e-21 Score=138.19 Aligned_cols=154 Identities=13% Similarity=0.020 Sum_probs=96.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|..|+|||||+.++..... ...+.+|..+. .+......+.+|||+|. +.+..+...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------e~~~~l~~~ 70 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF---PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ----------EEYDRLRTL 70 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC---CcCCCCceEeeeEEEEEECCEEEEEEEEECCCc----------hhhhhhhhh
Confidence 6899999999999999999998732 22333332221 11112356899999995 222334444
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh--hCCcEEEEEeccCCCCcHHH-HHHH---------HHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPIDV-ARRA---------MQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~-~~~~---------~~~~~~~~ 162 (198)
|+.. +|++++|+|.++..+-... .|...+.. .+.|+++|+||+|+...... +... ++.++...
T Consensus 71 ~~~~---a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 147 (191)
T cd01875 71 SYPQ---TNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred hccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 4443 8999999999763222222 23443432 36899999999999654321 1100 11111111
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.. ...+++++||++|+|++++++++.+.+
T Consensus 148 ~~--~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 148 QI--HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred Hc--CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 11 125799999999999999999998755
No 145
>CHL00071 tufA elongation factor Tu
Probab=99.87 E-value=8.5e-21 Score=150.48 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=117.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc--------------ceeecCCCCceeEEE---EEEeCCceEEEeCCCCcccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG--------------VVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~ 81 (198)
....+|+++|.+++|||||+++|++... ........++|.+.. +...+.++.++||||+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh---- 85 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH---- 85 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh----
Confidence 3457899999999999999999997410 011122245665543 2223567999999997
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHH-HHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEE 159 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~ 159 (198)
..+....+.....+|++++|+|+..++...+.+++..+...++| +|+++||+|+.+..+. +...+++.+
T Consensus 86 ---------~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~ 156 (409)
T CHL00071 86 ---------ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRE 156 (409)
T ss_pred ---------HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 45566666667779999999999998888888888888888898 7789999999875543 334456666
Q ss_pred HHHhccC--CCCCcEEeccCCCCC------------------hHHHHHHHHHhh
Q 029158 160 SLKANNS--LVQPVMMVSSKSGAG------------------IRSLRTVLSKIA 193 (198)
Q Consensus 160 ~~~~~~~--~~~~v~~~Sa~~~~g------------------i~~l~~~i~~~~ 193 (198)
.+..... ...|++++||.+|++ +..|++.|.+..
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 6655332 237899999998863 466777776644
No 146
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.87 E-value=6.2e-21 Score=140.24 Aligned_cols=175 Identities=22% Similarity=0.243 Sum_probs=122.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.....|+++|.||+|||||.|.+.+. ++..++....||+--. +.....++.|+||||+...... ...........
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhh
Confidence 45678999999999999999999998 7777888777776533 2233689999999998553111 11112233444
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-CCcEEEEEeccCCCCcHH-------------HHHHHHHHHHHH
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPID-------------VARRAMQIEESL 161 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~-------------~~~~~~~~~~~~ 161 (198)
.+......||.+++++|++..-....-.++..+... ..|-++|+||.|...... +....-.+++.+
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 566666779999999999863334444556666654 699999999999876532 122233444444
Q ss_pred Hhcc-----------CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 162 KANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 162 ~~~~-----------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.... .....+|++||..|+|++++.+++...++.
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 4322 112348999999999999999999987764
No 147
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=3.7e-21 Score=140.23 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=94.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|.+|+|||||+++++... .. .+. +|....+. ....++.+|||||... +..+...++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~-f~---~~~-~Tig~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~ 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR-FK---DTV-STVGGAFYLKQWGPYNISIWDTAGREQ----------FHGLGSMYC 65 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-CC---CCC-CccceEEEEEEeeEEEEEEEeCCCccc----------chhhHHHHh
Confidence 379999999999999999999874 22 122 22222211 1246789999999622 133344444
Q ss_pred hcccccceEEEEEeCCCCCCcCcH--HHHHHHHh--hCCcEEEEEeccCCCCcHH-----------------HHHHHHHH
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPID-----------------VARRAMQI 157 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~Dl~~~~~-----------------~~~~~~~~ 157 (198)
. .+|++++|+|.++..+.... ++....+. .+.|+|+|+||+|+..... ..-..+..
T Consensus 66 ~---~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 66 R---GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred c---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 4 38999999999873222222 22222222 3589999999999975110 00001111
Q ss_pred HHHHHhcc-----------CCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 158 EESLKANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 158 ~~~~~~~~-----------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+....... ....+++++||++|.|+++++..+.+.+
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11111111 1126799999999999999999988654
No 148
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.87 E-value=9.4e-21 Score=136.49 Aligned_cols=165 Identities=22% Similarity=0.201 Sum_probs=107.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecC---CCCceeEEEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~---~~~~t~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||+|+|++......... ...+|.....+.. ..++.+|||||+++..... ..+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------~~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP------DDYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH------HHHHHH
Confidence 5799999999999999999998531111111 1112322222221 3579999999987542211 122221
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH---------HHHHHHHHHHHHH----h
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID---------VARRAMQIEESLK----A 163 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---------~~~~~~~~~~~~~----~ 163 (198)
. ....+|+++++.+. ++...+..+++.+...+.|+++|+||+|+..+.. .++..+.+++.+. .
T Consensus 76 ~--~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 M--KFSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred h--CccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 1 12347888887543 4677888888888888899999999999964322 2233444444333 3
Q ss_pred ccCCCCCcEEeccC--CCCChHHHHHHHHHhhccc
Q 029158 164 NNSLVQPVMMVSSK--SGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 164 ~~~~~~~v~~~Sa~--~~~gi~~l~~~i~~~~~~~ 196 (198)
......++|.+|+. .++|+..|.+.|...+...
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 33345689999998 6899999999999887643
No 149
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=4.7e-21 Score=138.28 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=94.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
+|+++|.+|+|||||++++++... ...+..++.+. .+. .....+.+|||||... +..+...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF---EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS----------FPAMRKLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC---CccCCCchhhheeEEEEECCEEEEEEEEECCCchh----------hhHHHHHH
Confidence 589999999999999999998742 22233333221 111 1225789999999522 12222233
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+. .+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+......... ....+.... ....+++
T Consensus 68 ~~---~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~-~~~~~~~~~--~~~~~~~ 141 (198)
T cd04147 68 IQ---NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA-KDALSTVEL--DWNCGFV 141 (198)
T ss_pred hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH-HHHHHHHHh--hcCCcEE
Confidence 33 3899999999976322221 122222222 36899999999999753211011 111111111 1236789
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|.|+++++++|.+.+.
T Consensus 142 ~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 142 ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 150
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=4.1e-21 Score=136.16 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=95.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++.+.. ....+.+|... ..+......+.+|||+|.. .+..+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~----------~~~~~~~~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC---YPETYVPTVFENYTASFEIDEQRIELSLWDTSGSP----------YYDNVRPL 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc---CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCch----------hhhhcchh
Confidence 579999999999999999999873 22333333221 1111224678999999952 11222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHH-HH---------HHHHHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID-VA---------RRAMQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~-~~---------~~~~~~~~~~~ 162 (198)
++. .+|++++|+|.++..+-.. ..|+..+... +.|+++|+||+|+..... .. -..++.++...
T Consensus 69 ~~~---~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~ 145 (178)
T cd04131 69 CYP---DSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK 145 (178)
T ss_pred hcC---CCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence 333 4899999999986433222 2455555433 689999999999964211 00 00111112211
Q ss_pred hccCCCC-CcEEeccCCCCC-hHHHHHHHHHh
Q 029158 163 ANNSLVQ-PVMMVSSKSGAG-IRSLRTVLSKI 192 (198)
Q Consensus 163 ~~~~~~~-~v~~~Sa~~~~g-i~~l~~~i~~~ 192 (198)
. .+. +++++||++|+| ++++|..+.+.
T Consensus 146 ~---~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 146 Q---LGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred H---hCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 1 134 799999999995 99999988874
No 151
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=6.8e-21 Score=139.65 Aligned_cols=156 Identities=16% Similarity=0.076 Sum_probs=99.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+.++++... ...+.+|... ..+......+.+|||+|. +.+..+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F---~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~----------e~~~~~ 77 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTAGLETEEQRVELSLWDTSGS----------PYYDNV 77 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCC---CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc----------hhhHHH
Confidence 3567899999999999999999998732 2233333211 122223467999999994 222344
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHH----------HHHHHHHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID----------VARRAMQIEE 159 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~ 159 (198)
...++.. +|++++|+|.++..+-.. ..|+..+... +.|+++|+||+|+..... ..-..++.++
T Consensus 78 ~~~~~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 78 RPLCYSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHcCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 4445444 899999999986433222 2455555432 689999999999864210 0000112222
Q ss_pred HHHhccCCCC-CcEEeccCCCC-ChHHHHHHHHHhh
Q 029158 160 SLKANNSLVQ-PVMMVSSKSGA-GIRSLRTVLSKIA 193 (198)
Q Consensus 160 ~~~~~~~~~~-~v~~~Sa~~~~-gi~~l~~~i~~~~ 193 (198)
.... .+. +++++||++|+ |++++|+.+...+
T Consensus 155 ~a~~---~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 155 LAKQ---LGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHH---cCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 2222 135 58999999998 8999999887654
No 152
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=4.9e-21 Score=134.69 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|++|+|||||++++.+.. .. ....+..+.+. .+.. ....+.+|||||... +....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~ 73 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGL-FP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSIT 73 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC-CC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence 45789999999999999999998652 11 11111111111 1111 235688999999521 12223
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
..++. .+|++++++|++....... ..++..+. ..+.|+++|+||+|+....+... ...+.+.... ..+
T Consensus 74 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~---~~~~~~~~~~--~~~ 145 (169)
T cd04114 74 QSYYR---SANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQ---QRAEEFSDAQ--DMY 145 (169)
T ss_pred HHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH---HHHHHHHHHc--CCe
Confidence 33433 3899999999976322111 23333333 33689999999999975433221 1111222111 367
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 146 YLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998753
No 153
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=5.4e-21 Score=157.11 Aligned_cols=151 Identities=26% Similarity=0.290 Sum_probs=106.1
Q ss_pred cCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccccc
Q 029158 28 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL 104 (198)
Q Consensus 28 G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (198)
|.+|+|||||+|++.+.. ...++++++|.+... ...+.++.+|||||..+-..... . +...+.++.. ..+
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~---e~v~~~~l~~-~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E---EEVARDYLLN-EKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-H---HHHHHHHHhh-cCC
Confidence 899999999999999974 467888999887542 23356799999999754211111 1 2233344332 358
Q ss_pred ceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHH
Q 029158 105 KRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 105 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~ 184 (198)
|++++|+|+++ .+...+...++.+.++|+++|+||+|+..........+.+.+.+ +.+++++||++|+|+++
T Consensus 74 DvvI~VvDat~--ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 74 DLVVNVVDASN--LERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERL------GVPVVPTSATEGRGIER 145 (591)
T ss_pred CEEEEEecCCc--chhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHc------CCCEEEEECCCCCCHHH
Confidence 99999999986 23345555566667899999999999865433222223333322 47999999999999999
Q ss_pred HHHHHHHhh
Q 029158 185 LRTVLSKIA 193 (198)
Q Consensus 185 l~~~i~~~~ 193 (198)
+++++.+.+
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998754
No 154
>PRK12735 elongation factor Tu; Reviewed
Probab=99.87 E-value=1.9e-20 Score=147.96 Aligned_cols=163 Identities=20% Similarity=0.256 Sum_probs=116.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc------cc--------eeecCCCCceeEEEEEE---eCCceEEEeCCCCcccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW------GV--------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~------~~--------~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~ 81 (198)
....+|+++|.+++|||||+++|++.. .. .......++|.+..... .+.++.++||||+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh---- 85 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH---- 85 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH----
Confidence 345789999999999999999998620 00 01112345665544222 3567999999997
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCCcHHH-HHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIEE 159 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~-~~~~~~~~~ 159 (198)
.++...+......+|++++|+|+..++...+.+++..+...++|.+ +++||+|+.+.++. +....++.+
T Consensus 86 ---------~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~ 156 (396)
T PRK12735 86 ---------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (396)
T ss_pred ---------HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 4556677777778999999999999887777888888887789966 57999999854332 233345555
Q ss_pred HHHhccC--CCCCcEEeccCCCC----------ChHHHHHHHHHhhc
Q 029158 160 SLKANNS--LVQPVMMVSSKSGA----------GIRSLRTVLSKIAR 194 (198)
Q Consensus 160 ~~~~~~~--~~~~v~~~Sa~~~~----------gi~~l~~~i~~~~~ 194 (198)
.+..... ...+++++||.+|. ++.+|++.|...++
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 5554332 24789999999984 67888888877653
No 155
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=2.8e-20 Score=152.58 Aligned_cols=158 Identities=23% Similarity=0.352 Sum_probs=103.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC-CceeEEEE--EEe-------------------CCceEEEeCC
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF--FKL-------------------GTKLCLVDLP 75 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~-~~t~~~~~--~~~-------------------~~~~~iiDtp 75 (198)
..+.|.|+++|.+++|||||+++|.+. .+. ...+ +.|+.... ... -..+.+||||
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~-~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTP 79 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGT-AVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTP 79 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCc-ccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECC
Confidence 457789999999999999999999876 222 1121 22322111 000 0137899999
Q ss_pred CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH------
Q 029158 76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID------ 149 (198)
Q Consensus 76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------ 149 (198)
|+.. +..+. ......+|++++|+|+++++.....+.+..+...++|+++++||+|+.....
T Consensus 80 G~e~----------f~~~~---~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~ 146 (586)
T PRK04004 80 GHEA----------FTNLR---KRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAP 146 (586)
T ss_pred ChHH----------HHHHH---HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCch
Confidence 9621 12222 2233459999999999998777777778877777899999999999863110
Q ss_pred -----------HH----HHHHHHHHHHHhc------------cCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158 150 -----------VA----RRAMQIEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 150 -----------~~----~~~~~~~~~~~~~------------~~~~~~v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
.. +....+...+... .....+++++||++|+|+++|.+.+..
T Consensus 147 ~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 147 FLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 1111121222211 123578999999999999999988764
No 156
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.86 E-value=3.5e-21 Score=134.92 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=95.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-e-EEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-Q-TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 100 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~-~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198)
.|+++|.+|+|||||++++.+.... ..+.+|. . ...+...+..+.+|||||...- ..+...++..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~---~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~~ 67 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL---ESVVPTTGFNSVAIPTQDAIMELLEIGGSQNL----------RKYWKRYLSG 67 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc---ccccccCCcceEEEeeCCeEEEEEECCCCcch----------hHHHHHHHhh
Confidence 3799999999999999999987322 2222221 1 1223334678999999996321 2223334433
Q ss_pred ccccceEEEEEeCCCCCCcC-cHHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHH-HHHHhccCCCCCcEEecc
Q 029158 101 RVSLKRVCLLIDTKWGVKPR-DHELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Sa 176 (198)
+|++++|+|+++...-. ...++..+.. .++|+++|+||+|+............+. +.+. ....++++++||
T Consensus 68 ---ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~Sa 142 (164)
T cd04162 68 ---SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIA--RGRRWILQGTSL 142 (164)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhc--CCCceEEEEeee
Confidence 89999999997632111 1223333322 3699999999999976554433222221 1111 223577899999
Q ss_pred CC------CCChHHHHHHHHH
Q 029158 177 KS------GAGIRSLRTVLSK 191 (198)
Q Consensus 177 ~~------~~gi~~l~~~i~~ 191 (198)
++ ++|++++++.+..
T Consensus 143 ~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 143 DDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred cCCCChhHHHHHHHHHHHHhc
Confidence 98 9999999998753
No 157
>PRK09866 hypothetical protein; Provisional
Probab=99.86 E-value=3.9e-20 Score=149.08 Aligned_cols=118 Identities=19% Similarity=0.109 Sum_probs=83.6
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC--CcEEEEEeccCC
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDT 144 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl 144 (198)
.++.|+||||+...... .. ...+.+ ....+|+|+||+|+.......+..+++.+...+ .|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~-~L----~k~M~e---qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP-HL----QKMLNQ---QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch-HH----HHHHHH---HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 47899999998653221 11 111222 234489999999999877788888888888766 499999999999
Q ss_pred CCcHH--HHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 145 VFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 145 ~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
.+..+ .+.....+...+.........++++||+.|.|++++.+.|..+
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 75332 3344444444433323335679999999999999999999874
No 158
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=1.4e-20 Score=134.77 Aligned_cols=154 Identities=22% Similarity=0.169 Sum_probs=94.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|.+|+|||||++++.+........+..+......... ....+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER----------FRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHhhHHHHc
Confidence 4799999999999999999998731111111111111111111 235678999999521 122333333
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
. .+|++++|+|.++..+-.. ..++..+.. ...|+++|+||+|+....... .....+.+. .+.++++
T Consensus 71 ~---~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~e 141 (188)
T cd04125 71 R---GAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDS------LNIPFFE 141 (188)
T ss_pred c---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHH------cCCeEEE
Confidence 3 4899999999976322111 223444433 247999999999997543211 111111111 1468999
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||+++.|++++++++.+.+.
T Consensus 142 vSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 142 TSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999887653
No 159
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.86 E-value=1.5e-20 Score=131.08 Aligned_cols=151 Identities=19% Similarity=0.178 Sum_probs=94.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEE---EE--EeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN---FF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~---~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|++|+|||||++++++.. .. .....++ .... +. .....+.+|||||.. .+.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK-FN--EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CC--CCcCCccceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhH
Confidence 379999999999999999999873 22 1222222 2211 11 123468999999941 2233333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.++. .+|++++|+|.++...... ..++..+.. .+.|+++|+||+|+........ +.+.+.... ...++
T Consensus 68 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~~---~~~~~ 139 (162)
T cd04123 68 IYYR---DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK--SEAEEYAKS---VGAKH 139 (162)
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--HHHHHHHHH---cCCEE
Confidence 4443 3899999999876322211 123333332 2589999999999975332111 111111111 14678
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++||+++.|++++++++.+.+
T Consensus 140 ~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 140 FETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 160
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=5e-21 Score=134.80 Aligned_cols=152 Identities=14% Similarity=0.032 Sum_probs=95.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|++|+|||||+++|++... ...+.++..+. ........+.+|||||.... ......
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF---PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccchh
Confidence 4799999999999999999998742 12222222211 11122456899999996431 111111
Q ss_pred HHhcccccceEEEEEeCCCCCC--cCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH---------HHHHHHHHHh
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARR---------AMQIEESLKA 163 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~~~ 163 (198)
++ ..+|++++++|+++..+ ....+++..+... +.|+++|+||+|+......... .+...+....
T Consensus 68 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 68 SY---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred hc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 12 34899999999976222 1223345544443 5999999999999876543210 1222222222
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158 164 NNSLVQPVMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
. + ..+++++||++|+|+++++++|.+
T Consensus 145 ~-~-~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 I-G-AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred h-C-CeEEEEeecCCCCCHHHHHHHHhh
Confidence 1 1 238999999999999999999875
No 161
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.86 E-value=5.3e-21 Score=135.20 Aligned_cols=153 Identities=17% Similarity=0.057 Sum_probs=98.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||+.++..... ...+.+|..+ ........++.+|||+|... +..+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f---~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRPL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC---CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccchh
Confidence 4799999999999999999998742 2233333322 11111246789999999632 1233333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHH--------HHHHHHHHHHHHhc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDV--------ARRAMQIEESLKAN 164 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~ 164 (198)
++. .+|++++|+|.++..+-.. ..|+..+.. .+.|+++|+||+|+...... .-..++.++.....
T Consensus 69 ~~~---~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 145 (176)
T cd04133 69 SYR---GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI 145 (176)
T ss_pred hcC---CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc
Confidence 444 4899999999986433332 245555543 26899999999999653210 00011222221111
Q ss_pred cCCCC-CcEEeccCCCCChHHHHHHHHHhh
Q 029158 165 NSLVQ-PVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 165 ~~~~~-~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+. +++++||++|.|++++|+.+.+.+
T Consensus 146 ---~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 146 ---GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ---CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 34 699999999999999999998764
No 162
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.86 E-value=8.4e-21 Score=134.27 Aligned_cols=155 Identities=13% Similarity=0.055 Sum_probs=94.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
+.+|+++|++|+|||||++++++... ...+.++..+ ..+......+.+|||||.... ..+..
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 67 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY----------DRLRP 67 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhh----------hhccc
Confidence 36899999999999999999998732 2223222211 112122356899999996221 11111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHH----------HHHHHHH
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARRA----------MQIEESL 161 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~ 161 (198)
. ....+|++++++|..+...-.. ..++..+.. .+.|+++|+||+|+.......... ...++..
T Consensus 68 ~---~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 68 L---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred c---ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 1 2245899999999875211111 223344433 268999999999987543221110 1111111
Q ss_pred HhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
... ...+++++||++|.|+++++++|.+.+
T Consensus 145 ~~~--~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 145 NKI--GAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHc--CCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 111 134799999999999999999998654
No 163
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.86 E-value=1.3e-20 Score=130.70 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=92.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 101 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (198)
|+++|++|+|||||+++|.+... ...+.++. .+. ........+.+|||||... +......++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~-- 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF---SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPR----------FRSMWERYCR-- 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC---CcCccCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHHh--
Confidence 79999999999999999998742 12222111 111 1222246789999999521 1223333433
Q ss_pred cccceEEEEEeCCCCCCcC-cHHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 102 VSLKRVCLLIDTKWGVKPR-DHELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~-~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
.+|++++|+|++...... ....+..+. ..+.|+++|+||+|+............+.. ........+++++|+
T Consensus 67 -~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa 143 (159)
T cd04159 67 -GVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNL--KSITDREVSCYSISC 143 (159)
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCc--ccccCCceEEEEEEe
Confidence 389999999997521111 112222221 136899999999999765433322222211 111122467899999
Q ss_pred CCCCChHHHHHHHHH
Q 029158 177 KSGAGIRSLRTVLSK 191 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~ 191 (198)
++|.|+++++++|.+
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999875
No 164
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.86 E-value=1.2e-20 Score=133.40 Aligned_cols=153 Identities=14% Similarity=0.006 Sum_probs=94.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||+.+++.... ...+.++..+ .........+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRPL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhh
Confidence 4799999999999999999998632 2333333322 11211235788999999521 1222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHH-HHHH---------HHHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID-VARR---------AMQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~-~~~~---------~~~~~~~~~ 162 (198)
++. .+|++++|+|.++.-+-... .++..+... +.|+++|+||+|+..... .+.. .+..++...
T Consensus 69 ~~~---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 145 (174)
T cd01871 69 SYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 145 (174)
T ss_pred hcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 333 48999999999863222222 244444332 589999999999965321 1100 011111111
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
.. ...+++++||++|+|++++++.+.+.
T Consensus 146 ~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 146 EI--GAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred Hc--CCcEEEEecccccCCHHHHHHHHHHh
Confidence 11 12589999999999999999998764
No 165
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=135.74 Aligned_cols=167 Identities=23% Similarity=0.243 Sum_probs=119.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
.....+|+++|.+|+|||||+|+|+.. ...++...+.++...+ ....+.++++|||||+++....+ .+..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D------~~~r 108 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD------AEHR 108 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh------HHHH
Confidence 345667889999999999999999976 3455555544443322 22335789999999998865444 2222
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcH----------------HHHHHHHH
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPI----------------DVARRAMQ 156 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~----------------~~~~~~~~ 156 (198)
..|.......|++++++|+.+..-..+.+++..+... +.++++++|.+|...+. ..++..+.
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 2344444458999999999998888888887766543 58999999999987651 12233344
Q ss_pred HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+.++. .-|++..|...++|++++...+.+.++.
T Consensus 189 ~~~~~q~----V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 189 LGRLFQE----VKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHhh----cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 4444443 5789999999999999999999987764
No 166
>PRK00049 elongation factor Tu; Reviewed
Probab=99.86 E-value=2.7e-20 Score=147.01 Aligned_cols=163 Identities=20% Similarity=0.256 Sum_probs=118.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-------c-------eeecCCCCceeEEEEEE---eCCceEEEeCCCCccc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-------V-------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFA 80 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-------~-------~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~ 80 (198)
.....+|+++|..++|||||+++|++... . .......++|.+..... .+.++.++||||+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~--- 85 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH--- 85 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH---
Confidence 34567899999999999999999987310 0 01112345666554322 3567999999997
Q ss_pred cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCCcHHH-HHHHHHHH
Q 029158 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIE 158 (198)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~-~~~~~~~~ 158 (198)
..+..........+|++++|+|+..+....+.+++..+...++|.+ +++||+|+....+. +....++.
T Consensus 86 ----------~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~ 155 (396)
T PRK00049 86 ----------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ----------HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence 4556666677778999999999999888888888888888899976 58999999864332 23344666
Q ss_pred HHHHhcc--CCCCCcEEeccCCCC----------ChHHHHHHHHHhh
Q 029158 159 ESLKANN--SLVQPVMMVSSKSGA----------GIRSLRTVLSKIA 193 (198)
Q Consensus 159 ~~~~~~~--~~~~~v~~~Sa~~~~----------gi~~l~~~i~~~~ 193 (198)
+.+.... ....|++++||.++. |+.+|++.|.+.+
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 6655432 235899999999875 5678888887754
No 167
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.86 E-value=4e-21 Score=135.90 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=102.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....+|+++|+.||||||++++|.... .....+..+... ..+...+..+.+||.+|.... ....+.|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~-~~~~~pT~g~~~-~~i~~~~~~~~~~d~gG~~~~----------~~~w~~y~ 79 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGE-ISETIPTIGFNI-EEIKYKGYSLTIWDLGGQESF----------RPLWKSYF 79 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSS-EEEEEEESSEEE-EEEEETTEEEEEEEESSSGGG----------GGGGGGGH
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcc-ccccCccccccc-ceeeeCcEEEEEEeccccccc----------cccceeec
Confidence 567899999999999999999999763 332222211111 112334678999999995221 22233444
Q ss_pred hcccccceEEEEEeCCCCCC-cCcHHHH-HHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc-cCCCCCcE
Q 029158 99 STRVSLKRVCLLIDTKWGVK-PRDHELI-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVM 172 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~-~~~~~~~-~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 172 (198)
.. +|+++||+|+++.-. ....+.+ +.+. ..++|+++++||+|+......++....+.- ... ......++
T Consensus 80 ~~---~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l--~~l~~~~~~~v~ 154 (175)
T PF00025_consen 80 QN---ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL--EKLKNKRPWSVF 154 (175)
T ss_dssp TT---ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG--GGTTSSSCEEEE
T ss_pred cc---cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh--hhcccCCceEEE
Confidence 43 899999999986211 1112222 2222 236999999999999876554443333321 111 23457799
Q ss_pred EeccCCCCChHHHHHHHHHhh
Q 029158 173 MVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.+||.+|+|+.+.++||.+.+
T Consensus 155 ~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 155 SCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHhcC
Confidence 999999999999999998763
No 168
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.86 E-value=3.2e-20 Score=130.81 Aligned_cols=151 Identities=18% Similarity=0.163 Sum_probs=94.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHH-HH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE-EL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~-~~ 93 (198)
..+|+++|++|+|||||+++++..... ..+..+. .+. .+......+.+|||||... +. .+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP---ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER----------FRKSM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC---CccccceeEEEEEEEEEECCeEEEEEEEeCCChHH----------HHHhh
Confidence 468999999999999999999987311 1111111 111 1111235789999999521 11 22
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL 167 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 167 (198)
...++ ..+|++++|+|++....... ..++..+.. .+.|+++|+||+|+....... .....+.+ . .
T Consensus 69 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----~--~ 139 (170)
T cd04115 69 VQHYY---RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD----A--H 139 (170)
T ss_pred HHHhh---cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH----H--c
Confidence 33333 34899999999986432222 234444443 258999999999987543221 11112211 1 1
Q ss_pred CCCcEEeccCC---CCChHHHHHHHHHhh
Q 029158 168 VQPVMMVSSKS---GAGIRSLRTVLSKIA 193 (198)
Q Consensus 168 ~~~v~~~Sa~~---~~gi~~l~~~i~~~~ 193 (198)
..+++++||++ +.++++++..+...+
T Consensus 140 ~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 SMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 37899999999 888888888887654
No 169
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.86 E-value=6e-21 Score=126.21 Aligned_cols=113 Identities=24% Similarity=0.399 Sum_probs=84.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
+|+++|.+|+|||||+|+|++. .....++.+++|+..... ..+..+.++||||+.+........ .....++.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence 6899999999999999999986 456788888888776432 235678999999987653332211 23444555
Q ss_pred cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEec
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 141 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 141 (198)
....+|+++||+|+.+.....+.++++.++ .+.|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 556699999999987733444566778786 78999999998
No 170
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.86 E-value=1.2e-20 Score=130.55 Aligned_cols=154 Identities=23% Similarity=0.226 Sum_probs=91.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeC--CceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++.+.. ......+.++.+... ...+ ..+.+|||||.... ...+......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhh
Confidence 689999999999999999999984 444444555555432 2223 67899999995321 1111222223
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
........|.++++.++..........+...... +.|+++++||+|+.... ........+.... ..+++++||
T Consensus 74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~--~~~~~~~sa 146 (161)
T TIGR00231 74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK----LKTHVAFLFAKLN--GEPIIPLSA 146 (161)
T ss_pred hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch----hhHHHHHHHhhcc--CCceEEeec
Confidence 2222223344444444332211111112222222 78999999999998754 1122222222222 367999999
Q ss_pred CCCCChHHHHHHHH
Q 029158 177 KSGAGIRSLRTVLS 190 (198)
Q Consensus 177 ~~~~gi~~l~~~i~ 190 (198)
+++.|+.+++++|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999875
No 171
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.86 E-value=2.2e-20 Score=147.88 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=103.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccee-------------------------e------cCCCCceeEEEEEE---eCC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVR-------------------------T------SDKPGLTQTINFFK---LGT 67 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~-------------------------~------~~~~~~t~~~~~~~---~~~ 67 (198)
.+|+++|+.++|||||+++|+....... . ....+.|.+..+.. .+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 3799999999999999999985421000 0 01123344443222 356
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCC
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVF 146 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~ 146 (198)
++.++||||+ ..+...+......+|++++|+|+..++...+.+.+..+...+. ++++++||+|+..
T Consensus 81 ~~~liDtPGh-------------~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGH-------------EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 8999999996 3445555566677999999999999988888888777777665 5888999999985
Q ss_pred cHH--HHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHH
Q 029158 147 PID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 147 ~~~--~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~ 184 (198)
... .++..+.+.+.+........+++++||++|+|+++
T Consensus 148 ~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 148 YDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 332 22333444433333333356899999999999985
No 172
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1e-20 Score=130.69 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=106.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..+|+++|.+|+|||.|+.++.... ....+ ..|..+. .......+++|||+|. +++..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~---f~e~~-~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDT---FTESY-ISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCC---cchhh-cceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhhh
Confidence 5689999999999999999999873 22222 2333332 2223468999999994 566777
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLV 168 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (198)
...|++. +++|++|+|.+..-+-.. ..|++.+++. ++|.++|+||+|+.+...... ..+.+... .+
T Consensus 75 t~syYR~---ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~------~~ 145 (205)
T KOG0084|consen 75 TSSYYRG---AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE------LG 145 (205)
T ss_pred hHhhccC---CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHh------cC
Confidence 7788877 899999999987322222 3456666654 579999999999986543221 11222222 13
Q ss_pred CC-cEEeccCCCCChHHHHHHHHHhhc
Q 029158 169 QP-VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~~-v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.| ++++|||++.++++.|..|...+.
T Consensus 146 ~~~f~ETSAK~~~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 146 IPIFLETSAKDSTNVEDAFLTLAKELK 172 (205)
T ss_pred CcceeecccCCccCHHHHHHHHHHHHH
Confidence 55 999999999999999998877654
No 173
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=1.1e-20 Score=138.38 Aligned_cols=153 Identities=13% Similarity=0.031 Sum_probs=96.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce------eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT------QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t------~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|.+|+|||||+++++..... ...+.++. ....+......+.+|||||.. . ....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-----~-------~~~~ 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD--DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-----M-------WTED 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC--ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-----h-------HHHh
Confidence 37999999999999999999866321 01222111 112222234678999999963 0 1111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
.++.. .+|++++|+|+.+..+.. ..+++..+.. .+.|+|+|+||+|+........ +..++ +.. ..+.+
T Consensus 67 ~~~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~--~~~~~-~a~--~~~~~ 139 (221)
T cd04148 67 SCMQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV--QEGRA-CAV--VFDCK 139 (221)
T ss_pred HHhhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH--HHHHH-HHH--HcCCe
Confidence 22221 489999999998632211 1334444443 3689999999999975432211 11111 111 12468
Q ss_pred cEEeccCCCCChHHHHHHHHHhhcc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++++||+++.|+++++++|...+..
T Consensus 140 ~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 140 FIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987753
No 174
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.86 E-value=1.6e-20 Score=139.38 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=96.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
+|+++|.+|+|||||++++++... ...+.+|+.+.. ... ....+.+|||+|... +..+...+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f---~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~~~ 68 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF---EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRRLS 68 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHHHH
Confidence 799999999999999999998732 223444433221 112 235788999999521 12222223
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 164 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 164 (198)
+. .+|++++|+|.++..+-.. ..+++.+.. .+.|+|+|+||+|+...... ..+.+++.+...
T Consensus 69 ~~---~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~~~ 143 (247)
T cd04143 69 IL---TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVGGD 143 (247)
T ss_pred hc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHHhc
Confidence 32 3899999999986322111 223333322 25899999999999752211 112233332211
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
...+++++||+++.|+++++++|.+.+.
T Consensus 144 --~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 144 --ENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred --CCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 1467999999999999999999988653
No 175
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.86 E-value=7.5e-21 Score=133.34 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=93.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
+|+++|++|+|||||+++++... ....+.+++.. ..+......+.+|||||..... ......+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR---FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc---cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc---------cchHHHH
Confidence 48999999999999999998763 22333333311 1111123458899999974210 1112223
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
+. .+|++++++|+++..+-.. ..++..+.. .+.|+++|+||+|+........ +..++.... ...++
T Consensus 69 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~ 140 (165)
T cd04146 69 IR---WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST--EEGEKLASE---LGCLF 140 (165)
T ss_pred HH---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH--HHHHHHHHH---cCCEE
Confidence 33 3899999999987422221 223333332 2689999999999864322111 111111111 13689
Q ss_pred EEeccCCCC-ChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGA-GIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~-gi~~l~~~i~~~~~ 194 (198)
+++||+++. |++++++.+.+.+.
T Consensus 141 ~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 141 FEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred EEeCCCCCchhHHHHHHHHHHHHh
Confidence 999999995 99999999987654
No 176
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.86 E-value=6.4e-21 Score=134.10 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=95.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++.+... ...+.+++.. ..+......+.+|||||... +..+.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF---IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----------FTAMREL 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCcchheEEEEEEECCEEEEEEEEeCCCccc----------chhhhHH
Confidence 4799999999999999999997742 2222333321 11212235789999999632 2333444
Q ss_pred HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHH----hhCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLME----RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (198)
++.. ++++++|+|.++...-. ...+...+. ..+.|+++++||+|+....... +....+.+. . ...+
T Consensus 69 ~~~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~ 140 (168)
T cd04177 69 YIKS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ----W-GNVP 140 (168)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH----c-CCce
Confidence 4443 78999999987631111 122333332 2368999999999997543221 111112111 1 1368
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||+++.|++++++++...+
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998654
No 177
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=2.8e-20 Score=146.98 Aligned_cols=162 Identities=20% Similarity=0.260 Sum_probs=113.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc-----c-c--------eeecCCCCceeEEEEEE---eCCceEEEeCCCCccc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQW-----G-V--------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFA 80 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~-----~-~--------~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~ 80 (198)
.....+|+++|..++|||||+++|++.. . . .......++|.+..... .+.++.+|||||+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh--- 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH--- 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch---
Confidence 3456789999999999999999998420 0 0 01112355666654322 2567999999997
Q ss_pred cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCCcHHHH-HHHHHHH
Q 029158 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVA-RRAMQIE 158 (198)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~-~~~~~~~ 158 (198)
..+...++.....+|++++|+|+.++....+.+++..+...++|.+ +++||+|+.+.++.. ...++++
T Consensus 86 ----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 86 ----------ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred ----------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 4455677777778999999999999888888888888888788866 689999998754432 2334566
Q ss_pred HHHHhccCC--CCCcEEeccCCCC--------ChHHHHHHHHHh
Q 029158 159 ESLKANNSL--VQPVMMVSSKSGA--------GIRSLRTVLSKI 192 (198)
Q Consensus 159 ~~~~~~~~~--~~~v~~~Sa~~~~--------gi~~l~~~i~~~ 192 (198)
+.+...... .++++++||.++. ++.++++.|.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred HHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 665544322 3799999999874 345566665543
No 178
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.86 E-value=2.7e-20 Score=134.08 Aligned_cols=168 Identities=11% Similarity=0.112 Sum_probs=112.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|.+|+|||||+|.|++.+........++.|...... ..+..+.++||||+.+..... ......+.+.+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~--~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP--EQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh--HHHHHHHHHHHH
Confidence 479999999999999999999984222222234556554322 246789999999998754322 112233444444
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHH----HHHHHHHHhccCCCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQ 169 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~ 169 (198)
.....+|++++|+|+.+ +...+...++.+.+. -.++++|+|++|.......++.. ..++...... +.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c---~~ 154 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC---GG 154 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh---CC
Confidence 44567899999999987 777787888777653 26899999999988765544432 2333333332 22
Q ss_pred CcEEec-----cCCCCChHHHHHHHHHhhcc
Q 029158 170 PVMMVS-----SKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 170 ~v~~~S-----a~~~~gi~~l~~~i~~~~~~ 195 (198)
.++.++ +..+.++++|++.|.+.++.
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 344444 45688999999999887764
No 179
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.86 E-value=8.2e-21 Score=134.20 Aligned_cols=152 Identities=16% Similarity=0.009 Sum_probs=93.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EE--EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
|+++|.+|+|||||++++++... ...+.++.... .+ ......+.+|||||.... ..+...++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF---PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY----------DRLRPLSY 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC---CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc----------chhchhhc
Confidence 58999999999999999998732 22222222221 11 111346899999995321 12222222
Q ss_pred hcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH-HH---------HHHHHHHHHhc
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA-RR---------AMQIEESLKAN 164 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~-~~---------~~~~~~~~~~~ 164 (198)
..+|++++++|.++.-+-.. ..++..+... +.|+++|+||+|+....... .. .+..++.....
T Consensus 68 ---~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 68 ---PDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 34899999999976322111 2344444432 69999999999997633211 00 01111121111
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
...+++++||++|+|++++++.+.+.+
T Consensus 145 --~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 145 --GAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred --CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 124799999999999999999988764
No 180
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=2.4e-20 Score=135.68 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=95.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
..+|+++|.+|+|||||++++++.. .... ..+..+.+.. +.. ....+.+|||||. +.+..+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~-~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~----------~~~~~~~ 69 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGR-FAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ----------ERFRSIT 69 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcc----------hhHHHHH
Confidence 3689999999999999999999873 2111 1111111211 111 1246889999995 2223334
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV 168 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 168 (198)
..++.. +|++++|+|.++..+-.. .+++..+.. ...|+++|+||+|+....... +....+.+. .+
T Consensus 70 ~~~~~~---~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~------~~ 140 (211)
T cd04111 70 RSYYRN---SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD------LG 140 (211)
T ss_pred HHHhcC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH------hC
Confidence 444444 899999999986321111 233443332 246789999999997643211 111222221 13
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhh
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.+++++||++|+|+++++++|.+.+
T Consensus 141 ~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 141 MKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998755
No 181
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.85 E-value=7.7e-21 Score=134.32 Aligned_cols=152 Identities=12% Similarity=0.043 Sum_probs=94.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+++++|++|+|||||+.++.+.. ....+.+|..+.. +......+.+|||||... +..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG---YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE----------FDKLRPL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh----------hcccccc
Confidence 378999999999999999998763 2334444443321 111235688999999622 1111222
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHHH---------H-HHHHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVA---------R-RAMQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~---------~-~~~~~~~~~~ 162 (198)
+ ...+|++++|+|..+..+... ..++..+.. .+.|+++|+||+|+....... . ..+...+...
T Consensus 68 ~---~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 144 (173)
T cd04130 68 C---YPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE 144 (173)
T ss_pred c---cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH
Confidence 2 234899999999986322222 235555543 268999999999997543210 0 0111111111
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
.. ...+++++||++|.|++++++.+.-
T Consensus 145 ~~--~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 145 KI--GACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred Hh--CCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 11 1248999999999999999998753
No 182
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.85 E-value=5.1e-20 Score=147.05 Aligned_cols=153 Identities=20% Similarity=0.312 Sum_probs=103.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-ce----------------------------eecCCCCceeEEEEEE---eC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VV----------------------------RTSDKPGLTQTINFFK---LG 66 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~---~~ 66 (198)
....+|+++|..++|||||+++|+.... +. ......+.|.+..... .+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4557899999999999999999985210 00 0111335565554332 35
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC---CCcCcHHHHHHHHhhC-CcEEEEEecc
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQ-TKYQVVLTKT 142 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~-~p~iiv~nK~ 142 (198)
..+.+|||||+ ..+...++.....+|++++|+|++.+ ......+.+..+...+ .|+++|+||+
T Consensus 85 ~~i~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGH-------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCH-------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 78999999996 34455566666679999999999987 3344444444444444 4689999999
Q ss_pred CCCC--cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158 143 DTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 143 Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~ 184 (198)
|+.. ....+...+++++.+..... ...+++++||++|+|+++
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9974 23344445555555544321 247899999999999986
No 183
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.5e-20 Score=128.77 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=111.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-------eCCceEEEeCCCCccccchhHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDA 89 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~~~~~~ 89 (198)
+.....+|+++|.+|+|||+++-++.... .......|..+.+.. ....+++|||.|. +.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~----f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ----------er 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDS----FNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ----------ER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhcc----CcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc----------hh
Confidence 44567899999999999999999999873 222223444433322 2457899999994 56
Q ss_pred HHHHHHHHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHhh---CCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhc
Q 029158 90 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKAN 164 (198)
Q Consensus 90 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 164 (198)
+..+...|+.. |+++++|+|.....+-. -..|++.+.++ ++|.++|+||+|+.....+. +.-+.+...+
T Consensus 74 f~ti~~sYyrg---A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~--- 147 (207)
T KOG0078|consen 74 FRTITTAYYRG---AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREY--- 147 (207)
T ss_pred HHHHHHHHHhh---cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHh---
Confidence 67778888887 89999999987633322 24467777654 68999999999998744322 1222222222
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+.+++++|||+|.|+++.+-.+.+.+.
T Consensus 148 ---G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 148 ---GIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred ---CCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988877554
No 184
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.85 E-value=5e-20 Score=151.46 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=104.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccc-------eeec------CCCCceeEEE---EEE---e--CCceEEEeCCCCcc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTIN---FFK---L--GTKLCLVDLPGYGF 79 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~-------~~~~------~~~~~t~~~~---~~~---~--~~~~~iiDtpG~~~ 79 (198)
.++++++|..++|||||+++|+..... .... ...+.|.... +.. . ...+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 568999999999999999999864210 0011 1124443322 211 1 25789999999732
Q ss_pred ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH
Q 029158 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 159 (198)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 159 (198)
+......++ ..+|++++|+|++++....+...+..+...+.|+++|+||+|+.... .....+.+.+
T Consensus 83 ----------F~~~v~~~l---~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~ 148 (595)
T TIGR01393 83 ----------FSYEVSRSL---AACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEE 148 (595)
T ss_pred ----------HHHHHHHHH---HhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHH
Confidence 122222333 34899999999998877666665555555689999999999997532 1222334433
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+. .....++++||++|.|+++++++|.+.++.
T Consensus 149 ~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 149 VIG---LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HhC---CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 321 112358999999999999999999887653
No 185
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.85 E-value=1.3e-20 Score=133.94 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=95.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++.+... ...+.+++.. .........+.+|||||..+ +..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF---VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILPQK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHHHH
Confidence 4799999999999999999998731 2223333221 22222235678999999522 1222222
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
++. .++++++++|.++...... ..++..+. ..+.|+++|+||+|+........ ......... ...++
T Consensus 69 ~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~~---~~~~~ 140 (180)
T cd04137 69 YSI---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST--EEGKELAES---WGAAF 140 (180)
T ss_pred HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH--HHHHHHHHH---cCCeE
Confidence 333 3889999999986322111 12222222 23679999999999975332111 111111111 13689
Q ss_pred EEeccCCCCChHHHHHHHHHhhcc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+++||+++.|+.++++++.+.+..
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 141 LESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 186
>PLN03127 Elongation factor Tu; Provisional
Probab=99.85 E-value=7.3e-20 Score=145.94 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=113.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC------c-cce-------eecCCCCceeEEEEEE---eCCceEEEeCCCCccccc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ------W-GVV-------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 82 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~------~-~~~-------~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~ 82 (198)
...+|+++|..++|||||+++|.+. . ... ..+...++|.+..... .+.++.++||||+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh----- 134 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH----- 134 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc-----
Confidence 4568999999999999999999732 0 000 1122356776654333 3568999999997
Q ss_pred hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcE-EEEEeccCCCCcHHHHH-HHHHHHHH
Q 029158 83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVAR-RAMQIEES 160 (198)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~~~~-~~~~~~~~ 160 (198)
..++..+......+|++++|+|+..+....+.+++..+...++|. |+++||+|+.+..+..+ ..+++++.
T Consensus 135 --------~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~ 206 (447)
T PLN03127 135 --------ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELREL 206 (447)
T ss_pred --------cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 234555555556699999999999988888889999998889994 78999999986544333 23355555
Q ss_pred HHhcc--CCCCCcEEeccC---CCCC-------hHHHHHHHHHhhc
Q 029158 161 LKANN--SLVQPVMMVSSK---SGAG-------IRSLRTVLSKIAR 194 (198)
Q Consensus 161 ~~~~~--~~~~~v~~~Sa~---~~~g-------i~~l~~~i~~~~~ 194 (198)
+.... ....|++++|+. +|.| +.+|++++.+.++
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 44322 224789999885 4544 7888888887653
No 187
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.85 E-value=2.4e-20 Score=129.82 Aligned_cols=149 Identities=14% Similarity=0.086 Sum_probs=94.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
+|+++|++|+|||||++++++.. ....+.+++.+. .+.. ....+.+||+||... +......+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 58999999999999999999873 233333333321 1111 135689999999522 22333333
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+.. +|++++|+|..+.....+ ..++..+.. .+.|+++|+||+|+....... .+...+..... ..+++
T Consensus 68 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~ 139 (160)
T cd00876 68 IRQ---GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGKALAKEW---GCPFI 139 (160)
T ss_pred Hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHHHHHHHc---CCcEE
Confidence 333 899999999876322111 222222221 369999999999998632211 12222222221 27899
Q ss_pred EeccCCCCChHHHHHHHHHh
Q 029158 173 MVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++||+++.|+++++++|.+.
T Consensus 140 ~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 140 ETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EeccCCCCCHHHHHHHHHhh
Confidence 99999999999999999865
No 188
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=1.2e-20 Score=133.34 Aligned_cols=154 Identities=13% Similarity=0.000 Sum_probs=93.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|++|+|||||++++++... ...+.++..+. ........+.+|||||.... ......
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLRPL 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccccc
Confidence 3799999999999999999998732 22233332221 11112345789999996331 111111
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHH----------HHHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPIDVARR----------AMQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~~~~~ 162 (198)
+ ...+|++++|+|..+.-.-.. ..++..+.. .+.|+++|+||+|+.+....... .+..++...
T Consensus 68 ~---~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 68 S---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred c---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 2 234799999999876322111 233444433 36999999999998654322110 111112211
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.. ...+++++||++|.|++++++.+.+.+
T Consensus 145 ~~--~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 145 EI--GAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred Hc--CCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 11 124699999999999999999987653
No 189
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.85 E-value=2.7e-20 Score=129.58 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=91.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce----eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t----~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.+|+++|.+|+|||||+.+++...... .++++. ....+......+.+|||+|... ..+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~---~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ---LESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQF 62 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC---CCCCCccceEEEEEECCEEEEEEEEECCCCCc---------------hhH
Confidence 379999999999999999988763211 122111 1122222235689999999631 122
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCc--HHHHHHHHHHHHHHHhccCCCCC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
+. .+|++++|+|.++.-+-.. ..++..+.. .+.|+++|+||+|+... ..... +..++ +... ...++
T Consensus 63 ~~---~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~--~~~~~-~~~~-~~~~~ 135 (158)
T cd04103 63 AS---WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDD--ARARQ-LCAD-MKRCS 135 (158)
T ss_pred Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCH--HHHHH-HHHH-hCCCc
Confidence 22 3899999999987332222 234444443 24799999999998531 21111 11111 1111 11478
Q ss_pred cEEeccCCCCChHHHHHHHHHh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++++||++++|++++|+.+.+.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999998754
No 190
>PLN03108 Rab family protein; Provisional
Probab=99.85 E-value=1.3e-19 Score=131.87 Aligned_cols=156 Identities=16% Similarity=0.098 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|++|+|||||++++++........+..+.+.. ..+......+.+|||||.. .+..+...
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~~~~ 74 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSITRS 74 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence 3578999999999999999999987321111111111111 1121223468899999951 12233333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
++. .+|++++|+|+....+... ..++..+.. ...|+++|+||+|+....... .+..++.... ...+++
T Consensus 75 ~~~---~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~ 146 (210)
T PLN03108 75 YYR---GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKE---HGLIFM 146 (210)
T ss_pred Hhc---cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC--HHHHHHHHHH---cCCEEE
Confidence 443 3899999999976322222 133333332 268999999999997532111 1111111111 146899
Q ss_pred EeccCCCCChHHHHHHHHHhh
Q 029158 173 MVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++||+++.|++++++++.+.+
T Consensus 147 e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 147 EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999998887654
No 191
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.85 E-value=3.1e-20 Score=133.70 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=93.0
Q ss_pred EcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 27 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 27 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
+|.+|+|||||+++++.... ...+.+ |.... +. .....+.+|||+|. +.+..+...|+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f---~~~~~~-Tig~~~~~~~~~~~~~~~~l~iwDt~G~----------e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF---EKKYVA-TLGVEVHPLVFHTNRGPIRFNVWDTAGQ----------EKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC---CCCCCC-ceeEEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhHHHhc
Confidence 69999999999999997631 222222 22211 11 12467899999995 222344444555
Q ss_pred cccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
. +|++++|+|.++..+-.. ..|+..+.. .+.|+++|+||+|+....-..+ .. +... ...++++++||
T Consensus 67 ~---ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~---~~-~~~~---~~~~~~~e~SA 136 (200)
T smart00176 67 Q---GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAK---SI-TFHR---KKNLQYYDISA 136 (200)
T ss_pred C---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHH---HH-HHHH---HcCCEEEEEeC
Confidence 4 899999999987432222 235555554 3689999999999854211111 11 1111 22578999999
Q ss_pred CCCCChHHHHHHHHHhh
Q 029158 177 KSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~ 193 (198)
++|+|++++|++|...+
T Consensus 137 k~~~~v~~~F~~l~~~i 153 (200)
T smart00176 137 KSNYNFEKPFLWLARKL 153 (200)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 192
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.85 E-value=9.3e-20 Score=151.75 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=105.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccee-------------ec------------------CCCCceeEEE---EE
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTIN---FF 63 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~-------------~~------------------~~~~~t~~~~---~~ 63 (198)
.....+|+++|.+++|||||+++|+....... .+ ...+.|.+.. +.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34456899999999999999999996521100 00 0122333332 22
Q ss_pred EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEecc
Q 029158 64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKT 142 (198)
Q Consensus 64 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~ 142 (198)
..+.++.++||||+ ..+...+......+|++++|+|+..++...+.+.+..+...+ .++++++||+
T Consensus 101 ~~~~~~~liDtPG~-------------~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~ 167 (632)
T PRK05506 101 TPKRKFIVADTPGH-------------EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKM 167 (632)
T ss_pred cCCceEEEEECCCh-------------HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEec
Confidence 23568999999996 333444555666799999999999988888888777777666 5688999999
Q ss_pred CCCCc--HHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHH
Q 029158 143 DTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 143 Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~ 184 (198)
|+... ...++....+.+.+........+++++||++|+|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 99752 2233444455444443333346899999999999874
No 193
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=2.8e-20 Score=130.96 Aligned_cols=154 Identities=18% Similarity=0.093 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE------EEEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT------INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~------~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
+..+|+++|.+|+|||||++++++... . ...+.+|+.. ..+......+.+||++|.... ..+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~ 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-S-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA----------ILL 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-C-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc----------ccc
Confidence 356899999999999999999998732 1 1334444321 111111246889999995321 112
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH-hhCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (198)
...++ ..+|++++|+|+++...... .+++..+. ..+.|+++|+||+|+....... ...+.+.+.+ + ..+
T Consensus 71 ~~~~~---~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~----~-~~~ 142 (169)
T cd01892 71 NDAEL---AACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKL----G-LPP 142 (169)
T ss_pred chhhh---hcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHc----C-CCC
Confidence 22233 23999999999976311111 13333332 2368999999999996543210 1112222221 1 124
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++++||++++|++++++.+.+.+
T Consensus 143 ~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 143 PLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CEEEEeccCccHHHHHHHHHHHh
Confidence 68999999999999999998765
No 194
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.5e-20 Score=144.70 Aligned_cols=160 Identities=20% Similarity=0.286 Sum_probs=121.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe------CCceEEEeCCCCccccchhHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
.+.|.|.++|+...|||||+..+-+. .++ .....+.|+-+.-+.. ...++|+||||+ ..
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t-~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-------------eA 67 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKT-NVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-------------EA 67 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcC-ccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcH-------------HH
Confidence 46788999999999999999999887 333 3333456665432222 268999999996 44
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH--HHHhccCCCCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE--SLKANNSLVQP 170 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~ 170 (198)
+...--++...+|.+++|+++.+++..++.+.++.++..++|+++++||+|.++.+. .....++++ .....++....
T Consensus 68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E~~gg~v~ 146 (509)
T COG0532 68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPEEWGGDVI 146 (509)
T ss_pred HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHhhcCCceE
Confidence 444444566779999999999999999999999999999999999999999996532 233333332 22233444578
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|+|+++|++.+.-..+
T Consensus 147 ~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 147 FVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHH
Confidence 999999999999999998865543
No 195
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.84 E-value=7.3e-20 Score=150.17 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=112.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccce-e-------------ecCCCCceeEE---EEEEeCCceEEEeCCCCccccchh
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVV-R-------------TSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE 84 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~-~-------------~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~ 84 (198)
++|+++|+.++|||||+++|+...... . .....+.|... .+.+.+..+.+|||||+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh------- 74 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH------- 74 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH-------
Confidence 579999999999999999998641100 0 01122344332 34445788999999997
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158 85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 164 (198)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 164 (198)
.++..+.......+|++++|+|+..+.......++..+...++|+++|+||+|+.... ..+....+.+.+...
T Consensus 75 ------~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 75 ------ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAEL 147 (594)
T ss_pred ------HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhh
Confidence 2233333444445999999999999887778888888888899999999999997532 223334444433221
Q ss_pred ----cCCCCCcEEeccCCCC----------ChHHHHHHHHHhhcc
Q 029158 165 ----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIARF 195 (198)
Q Consensus 165 ----~~~~~~v~~~Sa~~~~----------gi~~l~~~i~~~~~~ 195 (198)
.....|++++||++|. |++.|++.|.+.++.
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1124789999999996 899999999988764
No 196
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.84 E-value=8e-20 Score=133.33 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=93.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||+.++.+... ...+.+|... ..+......+.+|||+|.. .+..+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f---~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e----------~~~~l~~~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY---PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS----------YYDNVRPL 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCccCCccccceEEEEEECCEEEEEEEEeCCCcH----------HHHHHhHH
Confidence 5799999999999999999998732 2233333211 1222234678999999952 22333333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHh--hCCcEEEEEeccCCCCcHH-HHHH---------HHHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID-VARR---------AMQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~-~~~~---------~~~~~~~~~ 162 (198)
++. .+|++++|+|.++..+-.. ..|...+.. .+.|+++|+||+|+..... .... .++.+. +.
T Consensus 69 ~~~---~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~-~a 144 (222)
T cd04173 69 AYP---DSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTV-LA 144 (222)
T ss_pred hcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHH-HH
Confidence 433 4899999999987422222 123333322 2689999999999975321 1110 011111 11
Q ss_pred hccCCC-CCcEEeccCCCCC-hHHHHHHHHHh
Q 029158 163 ANNSLV-QPVMMVSSKSGAG-IRSLRTVLSKI 192 (198)
Q Consensus 163 ~~~~~~-~~v~~~Sa~~~~g-i~~l~~~i~~~ 192 (198)
. ..+ .+++++||+++++ ++++|+.+...
T Consensus 145 k--~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 145 K--QVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred H--HcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 1 113 4899999999985 99999988764
No 197
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.84 E-value=9.9e-20 Score=145.36 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=115.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc-e----------------------------eecCCCCceeEEEEEE---eC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-V----------------------------RTSDKPGLTQTINFFK---LG 66 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~---~~ 66 (198)
....+|+++|..++|||||+.+|+..... . ......+.|.+..+.. .+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34568999999999999999999852100 0 0011234555544333 35
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhCCc-EEEE
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVV 138 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv 138 (198)
..+.|+||||+ .++..++......+|++++|+|+..|. .....+++..+...++| +|++
T Consensus 85 ~~i~lIDtPGh-------------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~ 151 (446)
T PTZ00141 85 YYFTIIDAPGH-------------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVC 151 (446)
T ss_pred eEEEEEECCCh-------------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEE
Confidence 68999999997 566777888888899999999999876 35667888888888887 5789
Q ss_pred EeccCCCC----cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH------------HHHHHHH
Q 029158 139 LTKTDTVF----PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS------------LRTVLSK 191 (198)
Q Consensus 139 ~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~------------l~~~i~~ 191 (198)
+||+|... ....++..+.+++.+..... ...+++++|+.+|+|+.+ |++.|..
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~ 222 (446)
T PTZ00141 152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT 222 (446)
T ss_pred EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC
Confidence 99999532 34556667777776664432 258899999999999964 7777654
No 198
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.84 E-value=9.9e-20 Score=146.37 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccee-------------ec------------------CCCCceeEEEEE---E
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTINFF---K 64 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~-------------~~------------------~~~~~t~~~~~~---~ 64 (198)
....+|+++|.+++|||||+++|+....... .+ ...+.|.+..+. .
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4567999999999999999999986521100 00 012234444322 2
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccC
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTD 143 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D 143 (198)
.+.++.|+||||+ ..+..........+|++++|+|+..++...+.+.+..+...+ .|+|+++||+|
T Consensus 105 ~~~~i~~iDTPGh-------------~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGH-------------EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence 3578999999996 344445555567799999999999988887777766666655 46889999999
Q ss_pred CCCcH--HHHHHHHHHHHHHHhcc-CCCCCcEEeccCCCCChHHH
Q 029158 144 TVFPI--DVARRAMQIEESLKANN-SLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 144 l~~~~--~~~~~~~~~~~~~~~~~-~~~~~v~~~Sa~~~~gi~~l 185 (198)
+.... ...+..+.+...+.... ....+++++||++|+|++++
T Consensus 172 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 98532 23334444444333222 23578999999999999764
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=8.6e-20 Score=150.19 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=106.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc-e------ee------cCCCCceeEE---EEEE-----eCCceEEEeCCCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-V------RT------SDKPGLTQTI---NFFK-----LGTKLCLVDLPGY 77 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~-~------~~------~~~~~~t~~~---~~~~-----~~~~~~iiDtpG~ 77 (198)
...++++++|..++|||||+.+|+..... . .. ....+.|... .+.. .+..+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 45678999999999999999999863100 0 00 1112333321 1211 1467899999997
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHH
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 157 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 157 (198)
.+ +......++ ..+|++++|+|++++....+...+..+...+.|+++|+||+|+.... .....+.+
T Consensus 85 ~d----------F~~~v~~sl---~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-~~~v~~ei 150 (600)
T PRK05433 85 VD----------FSYEVSRSL---AACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-PERVKQEI 150 (600)
T ss_pred HH----------HHHHHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHH
Confidence 32 122222333 34899999999999877666666666666689999999999997532 22223334
Q ss_pred HHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 158 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 158 ~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++.+. .....++++||++|.|+++++++|.+.++.
T Consensus 151 ~~~lg---~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 151 EDVIG---IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHhC---CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 33321 112348999999999999999999887653
No 200
>PLN03126 Elongation factor Tu; Provisional
Probab=99.84 E-value=2.1e-19 Score=144.08 Aligned_cols=149 Identities=20% Similarity=0.244 Sum_probs=109.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc--------------ceeecCCCCceeEEE---EEEeCCceEEEeCCCCcccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG--------------VVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~ 81 (198)
....+|+++|.+++|||||+++|++... ........+.|.+.. +...+..+.++||||+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh---- 154 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH---- 154 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH----
Confidence 3456799999999999999999996310 001122344555543 2234678999999997
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHH-HHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEE 159 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~ 159 (198)
..+..+++.....+|++++|+|+..+....+.+++..+...++| +|+++||+|+.+.++. +...+++.+
T Consensus 155 ---------~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 155 ---------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred ---------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 45666777777789999999999999888888888888888898 7789999999875543 334446666
Q ss_pred HHHhcc--CCCCCcEEeccCCCC
Q 029158 160 SLKANN--SLVQPVMMVSSKSGA 180 (198)
Q Consensus 160 ~~~~~~--~~~~~v~~~Sa~~~~ 180 (198)
.+.... ....|++++|+.++.
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHhcCCCcCcceEEEEEccccc
Confidence 665532 236889999998874
No 201
>COG2262 HflX GTPases [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=138.86 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=110.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
..+..|.|+++|.+|+|||||+|+|.+.. ....+....|-+.+... .+.++.+-||-||.... +++.-+.|..
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L-P~~LV~AFks 264 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL-PHPLVEAFKS 264 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccC-ChHHHHHHHH
Confidence 45678999999999999999999999874 44455555554433222 25789999999986643 3333344443
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHH-HHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
.+. ....+|+++.|+|++++......+ ..+.+.+ ...|+|+|+||+|+...... ... .... .
T Consensus 265 TLE----E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~----~~~~---~ 330 (411)
T COG2262 265 TLE----EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAE----LERG---S 330 (411)
T ss_pred HHH----HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhh----hhhc---C
Confidence 333 334589999999999853222222 2233333 46899999999999876541 111 1111 1
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
...+++||++|+|++.|.+.|.+.+..
T Consensus 331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 331 PNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 158999999999999999999987763
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.84 E-value=1.1e-19 Score=134.04 Aligned_cols=158 Identities=23% Similarity=0.279 Sum_probs=106.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccc----eeec------C------CCCceeE---EEEEEeCCceEEEeCCCCccccch
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGV----VRTS------D------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~----~~~~------~------~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~ 83 (198)
+|+++|.+|+|||||+++|+..... ..+. + ..+.+.. ..+...+.++.+|||||+.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~---- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD---- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence 4899999999999999999864210 0000 0 1112222 22334467899999999742
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 163 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 163 (198)
+..+.......+|++++|+|+.++.......++..+...++|+++++||+|+.... .++..+.+++.+..
T Consensus 77 ---------f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~ 146 (237)
T cd04168 77 ---------FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSS 146 (237)
T ss_pred ---------hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHHHHHHHCC
Confidence 11222233344899999999999877666777888888899999999999997532 23333333333221
Q ss_pred ----------------------------------------------------------ccCCCCCcEEeccCCCCChHHH
Q 029158 164 ----------------------------------------------------------NNSLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 164 ----------------------------------------------------------~~~~~~~v~~~Sa~~~~gi~~l 185 (198)
..+...|++..||.++.|+..|
T Consensus 147 ~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~l 226 (237)
T cd04168 147 DIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEEL 226 (237)
T ss_pred CeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHH
Confidence 0111367888899999999999
Q ss_pred HHHHHHhhc
Q 029158 186 RTVLSKIAR 194 (198)
Q Consensus 186 ~~~i~~~~~ 194 (198)
++.|.+.++
T Consensus 227 l~~~~~~~p 235 (237)
T cd04168 227 LEGITKLFP 235 (237)
T ss_pred HHHHHHhcC
Confidence 999998775
No 203
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=2.9e-19 Score=146.59 Aligned_cols=163 Identities=19% Similarity=0.154 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-cee-------------ecCCCCceeEEE---EEEeCCceEEEeCCCCcccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVR-------------TSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~~-------------~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~ 81 (198)
....+|+++|..++|||||+++|+.... +.. .....+.|.... +...+..+.+|||||+.+-
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df- 81 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF- 81 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh-
Confidence 3567899999999999999999996311 000 011233343322 3334678999999997331
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 161 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (198)
..........+|++++|+|+..+....+..++..+...++|.++++||+|+.... .....+.+.+.+
T Consensus 82 ------------~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~-~~~vl~ei~~l~ 148 (607)
T PRK10218 82 ------------GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR-PDWVVDQVFDLF 148 (607)
T ss_pred ------------HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCc-hhHHHHHHHHHH
Confidence 1122222344999999999999877777778888888899999999999997542 223334444443
Q ss_pred Hhc----cCCCCCcEEeccCCCC----------ChHHHHHHHHHhhcc
Q 029158 162 KAN----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIARF 195 (198)
Q Consensus 162 ~~~----~~~~~~v~~~Sa~~~~----------gi~~l~~~i~~~~~~ 195 (198)
... ....+|++++||++|. |+..|++.|.++++.
T Consensus 149 ~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 149 VNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred hccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 221 1224889999999998 688999998887753
No 204
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=134.45 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=113.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EE-EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
-|.+||.|++|||||++.+...+ ..+.+|+.||.-.. +. .....+++-|.||+.+..+.. .-+-.+|+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~FL 232 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG------VGLGLRFL 232 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC------CCccHHHH
Confidence 58899999999999999999985 88999999997643 22 235679999999998765433 22334666
Q ss_pred hcccccceEEEEEeCCCCCC---cCc-HHHHHHHHhh-----CCcEEEEEeccCCCCc-HHHHHHHHHHHHHHHhccCCC
Q 029158 99 STRVSLKRVCLLIDTKWGVK---PRD-HELISLMERS-----QTKYQVVLTKTDTVFP-IDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~---~~~-~~~~~~~~~~-----~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (198)
++...+.++++|+|.+..-. ..+ ..+...+..+ ++|.++|+||+|+... ++.++..+.+++... .
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~-----~ 307 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG-----W 307 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC-----C
Confidence 66667899999999986322 111 2223444332 6899999999996544 455555555554422 2
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
....++||.+++|+++|...+.+.+..
T Consensus 308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 308 EVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred CcceeeehhcccCHHHHHHHHHHHHHH
Confidence 223339999999999999998887654
No 205
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.5e-20 Score=143.37 Aligned_cols=165 Identities=25% Similarity=0.277 Sum_probs=118.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.+.|+++|+||+|||||+|+|.+. .+..+++.++||+|. .+.-.+.++.++||+|+.+.. .+..+ ..-+++.
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~-~~~iE---~~gI~rA 342 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES-NDGIE---ALGIERA 342 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc-CChhH---HHhHHHH
Confidence 478999999999999999999998 789999999999984 354558899999999986611 11111 1123344
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh------------CCcEEEEEeccCCCCcHHHH-H-HHHHHHHHHHh
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS------------QTKYQVVLTKTDTVFPIDVA-R-RAMQIEESLKA 163 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~------------~~p~iiv~nK~Dl~~~~~~~-~-~~~~~~~~~~~ 163 (198)
......+|++++|+|+.....+.+..+.+.+... ..|++++.||.|+.++.... . .....+.
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~---- 418 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA---- 418 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc----
Confidence 4555569999999999887788887766666532 26889999999998763211 1 0111111
Q ss_pred ccCCC-CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 164 NNSLV-QPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 164 ~~~~~-~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..... ..+.++|+++++|+++|.+.+.+.+.
T Consensus 419 ~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 419 EGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 11112 34556999999999999999887654
No 206
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.5e-19 Score=140.77 Aligned_cols=160 Identities=21% Similarity=0.295 Sum_probs=121.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
++.|.|.++|....|||||+.+|-+.. ++ .....+.|+-+.-+. .+..++|+||||+ ..+.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~-VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-------------aAF~ 215 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS-VA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-------------AAFS 215 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc-ee-hhhcCCccceeceEEEecCCCCEEEEecCCcH-------------HHHH
Confidence 568899999999999999999999873 33 333455666544222 4788999999996 3444
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH-H-HHhccCCCCCcE
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE-S-LKANNSLVQPVM 172 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~-~~~~~~~~~~v~ 172 (198)
..--++....|.+++|+-+.+|+..++.+.++.....++|+|+.+||+|.+...- ++...++.+ - .....+...+++
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvi 294 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVI 294 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEE
Confidence 4444566779999999999999999999999999999999999999999886543 222222221 1 112234468899
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|+|++.|.+.+.-.+.
T Consensus 295 piSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 295 PISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred EeecccCCChHHHHHHHHHHHH
Confidence 9999999999999998876543
No 207
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=123.69 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=107.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC---CCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
+....+|.++|.+|+|||||++++.+.+....... ....|++..+...-..+++|||+|. +++..+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ----------ERFqsLg 75 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ----------ERFQSLG 75 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccH----------HHhhhcc
Confidence 45568999999999999999999998642111111 1224555555555567899999993 4445554
Q ss_pred HHHHhcccccceEEEEEeCCCC--CCcCcH---HHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWG--VKPRDH---ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 166 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~--~~~~~~---~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
-.++++ +|..++++|.... +...+. +++.+... ...|.|+++||+|+.............++-+....
T Consensus 76 ~aFYRg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g- 151 (210)
T KOG0394|consen 76 VAFYRG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG- 151 (210)
T ss_pred cceecC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC-
Confidence 455555 7888888887653 222222 22333222 24799999999999875433333344444444433
Q ss_pred CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 167 LVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.+|+|++|||...|+++.|+.+...+
T Consensus 152 -nipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 152 -NIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred -CceeEEecccccccHHHHHHHHHHHH
Confidence 69999999999999999999887654
No 208
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=2.2e-19 Score=128.94 Aligned_cols=153 Identities=12% Similarity=-0.047 Sum_probs=92.5
Q ss_pred CeEEEEcCCCCCHHHHHH-HHhcCccc--eeecCCCCcee--E-E------------EEEEeCCceEEEeCCCCccccch
Q 029158 22 PEIAFAGRSNVGKSSMLN-ALTRQWGV--VRTSDKPGLTQ--T-I------------NFFKLGTKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~-~l~~~~~~--~~~~~~~~~t~--~-~------------~~~~~~~~~~iiDtpG~~~~~~~ 83 (198)
.+|+++|.+|+|||||+. ++.+.... .....+.+|.. + . .+......+.+|||+|...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 589999999999999996 55543110 11222333321 1 0 1111246789999999621
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh--hCCcEEEEEeccCCCCcHH----------
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPID---------- 149 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~Dl~~~~~---------- 149 (198)
.+...++ ..+|++++|+|.++..+-... .|+..+.. .+.|+++|+||+|+.....
T Consensus 79 --------~~~~~~~---~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 147 (195)
T cd01873 79 --------KDRRFAY---GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred --------hhhcccC---CCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccc
Confidence 1111222 359999999999864332222 34555543 2689999999999964210
Q ss_pred -------HHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 150 -------VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 150 -------~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
..-..++.++... ..+++++++||++|+|++++|+.+.+.
T Consensus 148 ~~~~~~~~~V~~~e~~~~a~---~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 148 ARPIKNADILPPETGRAVAK---ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccCCccCHHHHHHHHH---HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 0000111222211 124789999999999999999998764
No 209
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.82 E-value=6.4e-19 Score=127.41 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=91.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-----eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
++|+++|++|+|||||+++|..... ....+.++....... .+..+.+|||||+.. +......
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~---~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~----------~~~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY---RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK----------LRDKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---CCccCcEeecceEEEeecCCCCceEEEEECCCCHH----------HHHHHHH
Confidence 5799999999999999999998731 112222222222111 256799999999632 1222223
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--HHH-HHHHH-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH------
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--HEL-ISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK------ 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~-~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------ 162 (198)
++... +++++||+|+........ .++ +..+. ..+.|+++++||+|+......+...+.+++.+.
T Consensus 68 ~~~~~--~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r 145 (203)
T cd04105 68 TLKNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESR 145 (203)
T ss_pred HHhcc--CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 33331 399999999987421111 112 22221 137999999999999865433333333222111
Q ss_pred -h-c-------------------------cCCCCCcEEeccCCCC-ChHHHHHHHHH
Q 029158 163 -A-N-------------------------NSLVQPVMMVSSKSGA-GIRSLRTVLSK 191 (198)
Q Consensus 163 -~-~-------------------------~~~~~~v~~~Sa~~~~-gi~~l~~~i~~ 191 (198)
. . ....+.++.+|++.+. |++++.+||.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 146 SKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred hccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 0 0012457888887765 69999999875
No 210
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.82 E-value=1.7e-18 Score=126.18 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=76.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccce--------e------ecCCCCceeE-----EEEEEe--------CCceEEEeC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVV--------R------TSDKPGLTQT-----INFFKL--------GTKLCLVDL 74 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~--------~------~~~~~~~t~~-----~~~~~~--------~~~~~iiDt 74 (198)
++|+++|..++|||||+.+|+...... . .....+.|.. ..+... +..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 369999999999999999998642110 0 0001122211 112211 567899999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 75 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
||+.+ +..+.......+|++++|+|+.++....+..++..+...++|+++|+||+|+.
T Consensus 81 PG~~~-------------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVD-------------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCccc-------------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99732 22333344445999999999999887777778877777789999999999986
No 211
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.82 E-value=2.9e-18 Score=129.16 Aligned_cols=152 Identities=20% Similarity=0.328 Sum_probs=100.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecC--------CCCcee-EEE---EEEeC--CceEEEeCCCCccccchhHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQ-TIN---FFKLG--TKLCLVDLPGYGFAYAKEEV 86 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~--------~~~~t~-~~~---~~~~~--~~~~iiDtpG~~~~~~~~~~ 86 (198)
..+|+++|.+|+|||||+|+|++.. +..... ...++. ... +...+ .++++|||||+++.......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCC-CccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 4689999999999999999999884 332221 122221 111 11112 46999999999876533221
Q ss_pred H--------HHHHHHHHHHHhc-------ccccceEEEEEeCCC-CCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH
Q 029158 87 K--------DAWEELVKEYVST-------RVSLKRVCLLIDTKW-GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 150 (198)
Q Consensus 87 ~--------~~~~~~~~~~~~~-------~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 150 (198)
. +.+...+.+-.+. ...+|+++|++++.. ++...+.++++.+.. ++|+++|+||+|+.+..++
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHH
Confidence 1 1122222111111 124788999998764 666777888888875 7999999999999987777
Q ss_pred HHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 151 ARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
....+.+++.+... +++++.....
T Consensus 162 ~~~k~~i~~~l~~~---~i~~~~~~~~ 185 (276)
T cd01850 162 KEFKQRIMEDIEEH---NIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHc---CCceECCCCC
Confidence 77777777777654 4677776653
No 212
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=130.82 Aligned_cols=180 Identities=33% Similarity=0.471 Sum_probs=139.4
Q ss_pred CcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC-CCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHH
Q 029158 12 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAW 90 (198)
Q Consensus 12 ~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~ 90 (198)
.....|...+|++++.|.+++|||||+|.++....+...+. .++-|+.++.+..+..+.++|.||++.+--.......|
T Consensus 127 ~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 127 TAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred eeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchH
Confidence 34445667889999999999999999999998754443333 67788889999999999999999976654455556677
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--HH----HHHHHHHHHHHhc
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VA----RRAMQIEESLKAN 164 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~----~~~~~~~~~~~~~ 164 (198)
..+...|+-.+.+.--+++++|++.++...|...+.++.+.++|+.+|+||||...... .. .....++...+..
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 88888999888877778889999999999999999999999999999999999875432 11 1122233333333
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHH
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
.....|++.+|+.++.|++.|.=.|..
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 333578889999999999988655544
No 213
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=5.8e-19 Score=128.74 Aligned_cols=159 Identities=20% Similarity=0.211 Sum_probs=97.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccee-----------ecC------CCCceeE---EEEE-----EeCCceEEEeCCC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVR-----------TSD------KPGLTQT---INFF-----KLGTKLCLVDLPG 76 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~-----------~~~------~~~~t~~---~~~~-----~~~~~~~iiDtpG 76 (198)
++|+++|.+|+|||||+++|+....... ..+ ..+.+.. ..+. .....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3689999999999999999987521110 000 0112211 1111 1135789999999
Q ss_pred CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC-------cH-
Q 029158 77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-------PI- 148 (198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------~~- 148 (198)
+.+- ..........+|++++|+|+.++......+++..+...+.|+++|+||+|+.. .+
T Consensus 81 ~~~f-------------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~ 147 (213)
T cd04167 81 HVNF-------------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA 147 (213)
T ss_pred Ccch-------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence 7431 11222223348999999999887655555566666656799999999999862 12
Q ss_pred --HHHHHHHHHHHHHHhccC--------CCCCcEEeccCCCCChH--------HHHHHHHHhh
Q 029158 149 --DVARRAMQIEESLKANNS--------LVQPVMMVSSKSGAGIR--------SLRTVLSKIA 193 (198)
Q Consensus 149 --~~~~~~~~~~~~~~~~~~--------~~~~v~~~Sa~~~~gi~--------~l~~~i~~~~ 193 (198)
...+..+.+...+..... ....+++.|++.++++. +|++.|.+..
T Consensus 148 ~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 148 YFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 122233334433332211 12338899999998887 6777666554
No 214
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.81 E-value=8.4e-19 Score=125.43 Aligned_cols=158 Identities=16% Similarity=0.057 Sum_probs=94.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|++|+|||||++++...... ..+.++..+ ..+......+.+|||+|.... ......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~ 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP---EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY----------ERLRPL 68 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcccceEEEEEEECCEEEEEEEEECCCChhc----------cccchh
Confidence 47999999999999999999865321 122222211 111112346889999996321 111111
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH------HH--HHHHHHHHHhc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA------RR--AMQIEESLKAN 164 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~------~~--~~~~~~~~~~~ 164 (198)
+ ...+|++++++|..+...... ..++..+... +.|+++|+||+|+....... .. .+..+.....
T Consensus 69 ~---~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~- 144 (187)
T cd04129 69 S---YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE- 144 (187)
T ss_pred h---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH-
Confidence 1 234889999999865322222 2345555432 69999999999985421000 00 0111111111
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
....+++++||++|.|++++++++.+.+-..|
T Consensus 145 -~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 145 -IGAKKYMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred -hCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 11247999999999999999999998765544
No 215
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.81 E-value=6.7e-19 Score=120.77 Aligned_cols=147 Identities=21% Similarity=0.112 Sum_probs=92.0
Q ss_pred EEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158 26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 100 (198)
Q Consensus 26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198)
++|++|+|||||++++++... . ......+... .... ..+..+.+||+||.... .... ...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~---~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF-V-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLR---RLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc-C-CcccccchhheeeEEEEECCEEEEEEEEecCChHHH----------HhHH---HHH
Confidence 579999999999999998731 1 1111111111 1111 12567999999996321 1111 222
Q ss_pred ccccceEEEEEeCCCCCCcCcHHHH-----HHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 101 RVSLKRVCLLIDTKWGVKPRDHELI-----SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~~~~~~~~~-----~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
...+|++++|+|++.+....+...+ ......+.|+++++||+|+.......... ...... .....+++++|
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~--~~~~~~~~~~s 141 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLA--KELGVPYFETS 141 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHH--hhcCCcEEEEe
Confidence 3448999999999874333332221 22233479999999999998765443321 111111 12358999999
Q ss_pred cCCCCChHHHHHHHHH
Q 029158 176 SKSGAGIRSLRTVLSK 191 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~ 191 (198)
++.+.|+++++++|.+
T Consensus 142 ~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 142 AKTGENVEELFEELAE 157 (157)
T ss_pred cCCCCChHHHHHHHhC
Confidence 9999999999999853
No 216
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.81 E-value=3.6e-18 Score=114.58 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=103.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+..+|+++|..||||||++++|.+. ....+++..+... .+....+..+.+||..|. ...+..|. .|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~I-ktl~~~~~~L~iwDvGGq------~~lr~~W~----nYf 81 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQI-KTLEYKGYTLNIWDVGGQ------KTLRSYWK----NYF 81 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCC-CccccCCccceee-EEEEecceEEEEEEcCCc------chhHHHHH----Hhh
Confidence 35788999999999999999999997 3222222221111 123344788999999994 33344444 454
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHH-HH---hhCCcEEEEEeccCCCCcHHHHHHH--HHHHHHHHhccCCCCCc
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISL-ME---RSQTKYQVVLTKTDTVFPIDVARRA--MQIEESLKANNSLVQPV 171 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~-~~---~~~~p~iiv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~v 171 (198)
.. .|++++|+|++....-.+ ...+.. +. -.+.|+++++||.|+...-..+.+. ..+.+.. ....+++
T Consensus 82 es---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~---ks~~~~l 155 (185)
T KOG0073|consen 82 ES---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA---KSHHWRL 155 (185)
T ss_pred hc---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc---cccCceE
Confidence 44 899999999976322211 111222 21 2368999999999998544433332 2222222 2335899
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+-||+.+|+++.+-++|+...+.
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred EEEeccccccHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 217
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.81 E-value=1.7e-18 Score=130.40 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=76.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccce----eecC------C------CCceeE---EEEEEeCCceEEEeCCCCccccch
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVV----RTSD------K------PGLTQT---INFFKLGTKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~----~~~~------~------~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~ 83 (198)
+|+++|.+|+|||||+++|+...... .+.. + .+.+.. ..+...+..+.+|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 48999999999999999998542110 0100 0 011111 12333467899999999621
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
+..........+|++++|+|++.+........++.+...+.|.++++||+|+...
T Consensus 77 ---------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 ---------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred ---------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 2222333334599999999999877666677777777778999999999998754
No 218
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=8.8e-19 Score=120.01 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=102.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce---eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....++.++|..|+|||+|+.+++...+.+......+.. +..++......+++|||+|+ +.+....+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq----------e~frsv~~ 73 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ----------ESFRSVTR 73 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCc----------HHHHHHHH
Confidence 346789999999999999999999984333222222211 11223333568999999995 56677888
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.|++. +.++++|+|....-+-.. ..|+..++. .+.-+++++||+||....++.+ ++-+..... .+..+
T Consensus 74 syYr~---a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~--EEGeaFA~e---hgLif 145 (216)
T KOG0098|consen 74 SYYRG---AAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSK--EEGEAFARE---HGLIF 145 (216)
T ss_pred HHhcc---CcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccH--HHHHHHHHH---cCcee
Confidence 88888 778899999876322222 123333332 3677899999999987654432 122222211 25788
Q ss_pred EEeccCCCCChHHHHHHHHH
Q 029158 172 MMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~ 191 (198)
+++||++++|+++.|.-+..
T Consensus 146 mETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 146 METSAKTAENVEEAFINTAK 165 (216)
T ss_pred ehhhhhhhhhHHHHHHHHHH
Confidence 99999999999999875543
No 219
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.7e-19 Score=139.78 Aligned_cols=163 Identities=20% Similarity=0.207 Sum_probs=120.5
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcc-------------ceeecCCCCceeEE---EEEEeC---CceEEEeCCC
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWG-------------VVRTSDKPGLTQTI---NFFKLG---TKLCLVDLPG 76 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~-------------~~~~~~~~~~t~~~---~~~~~~---~~~~iiDtpG 76 (198)
.|-++..++.++-....|||||..+|+.... .-....+.+.|... ..++.+ +-+.+|||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 3557788999999999999999999986521 01122345566443 244444 7789999999
Q ss_pred CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHH
Q 029158 77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 156 (198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 156 (198)
+-+ +-.+..+....||++++|+||++|+..++..-+....+.+..+|.|+||+|++.+. .+....+
T Consensus 135 HvD-------------Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~ad-pe~V~~q 200 (650)
T KOG0462|consen 135 HVD-------------FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSAD-PERVENQ 200 (650)
T ss_pred ccc-------------ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCC-HHHHHHH
Confidence 743 11122223334999999999999999999888777778899999999999998754 3445555
Q ss_pred HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+++.+. ....+++.+|||+|.|+++++++|.+..+.
T Consensus 201 ~~~lF~---~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 201 LFELFD---IPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHhc---CCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 555544 234689999999999999999999988764
No 220
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.80 E-value=1.1e-18 Score=130.88 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=94.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc----cceee------------cCCCCceeEE---EEEEeCCceEEEeCCCCccccch
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQW----GVVRT------------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~----~~~~~------------~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~ 83 (198)
+|+++|.+|+|||||+++|+... ....+ ....++|.+. .+...+..+.++||||+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~----- 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV----- 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH-----
Confidence 48999999999999999997421 11111 1123344442 233447789999999973
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 163 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 163 (198)
++..+.......+|++++|+|+..+....+..++..+...++|+++++||+|+.... .+...+.+++.+..
T Consensus 76 --------df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~ 146 (270)
T cd01886 76 --------DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGA 146 (270)
T ss_pred --------HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCC
Confidence 222334444455899999999999888777888888888899999999999997532 33445566655542
Q ss_pred ccCCCCCcEEeccC
Q 029158 164 NNSLVQPVMMVSSK 177 (198)
Q Consensus 164 ~~~~~~~v~~~Sa~ 177 (198)
. ....++|+|+.
T Consensus 147 ~--~~~~~~Pisa~ 158 (270)
T cd01886 147 N--PVPLQLPIGEE 158 (270)
T ss_pred C--ceEEEeccccC
Confidence 2 12335677775
No 221
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=8e-18 Score=115.44 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=118.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccee-----ecCCC---CceeEEEEEEe----CCceEEEeCCCCccccchhH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----TSDKP---GLTQTINFFKL----GTKLCLVDLPGYGFAYAKEE 85 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~-----~~~~~---~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~ 85 (198)
.-...+|++.|+.++||||++..+.....+.. ..... .||....+... +..+.++||||+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq-------- 78 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ-------- 78 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc--------
Confidence 34567899999999999999999998731111 11112 25555443332 478999999995
Q ss_pred HHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158 86 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 164 (198)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 164 (198)
+++..++..+.++ ++++++++|++.+......++++.+...+ .|+++.+||.|+.+....+++.+.+...+
T Consensus 79 --~RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--- 150 (187)
T COG2229 79 --ERFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL--- 150 (187)
T ss_pred --HHHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc---
Confidence 5566777666666 89999999999876666677788887776 99999999999998876666655555443
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
...|+|..+|..++|..+.++.+...
T Consensus 151 --~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 --LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred --CCCceeeeecccchhHHHHHHHHHhh
Confidence 35899999999999999998887765
No 222
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.80 E-value=3.5e-18 Score=136.43 Aligned_cols=152 Identities=20% Similarity=0.231 Sum_probs=106.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEEEEEE---eCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LGT 67 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~---~~~ 67 (198)
...+|+++|..++|||||+.+|+..... .......+.|.+..+.. .+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 4567999999999999999998842100 00111233455544332 356
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------cCcHHHHHHHHhhCCc-EEEEE
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQVVL 139 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~ 139 (198)
.+.++||||+ .++..++......+|++++|+|+..+.. ....+.+..+...++| +|+++
T Consensus 86 ~i~liDtPGh-------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGH-------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEECCCH-------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 8999999997 6677777888888999999999998632 3445666667777885 68899
Q ss_pred eccCCCCc----HHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158 140 TKTDTVFP----IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 140 nK~Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~ 184 (198)
||+|+.+. ...++..+++++.+..... ...+++++||.+|+|+.+
T Consensus 153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 99998732 2344556666666654331 247899999999999853
No 223
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.79 E-value=2.7e-18 Score=119.84 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=96.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE---EEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~---~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
+|+++|++|+|||||++++.+... ...+.++. .+. .+. .....+.+||++|...- ..+...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF---PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF----------DSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST---TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG----------HHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc---ccccccccccccccccccccccccccccccccccccc----------cccccc
Confidence 689999999999999999998732 22232222 121 121 23467999999995321 222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
++.. +|++++++|.++.-+-.. ..|+..+... +.|+++|+||.|+........ +..++..... ..+++
T Consensus 68 ~~~~---~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~--~~~~~~~~~~---~~~~~ 139 (162)
T PF00071_consen 68 FYRN---SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV--EEAQEFAKEL---GVPYF 139 (162)
T ss_dssp HHTT---ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH--HHHHHHHHHT---TSEEE
T ss_pred cccc---cccccccccccccccccccccccccccccccccccceeeeccccccccccchh--hHHHHHHHHh---CCEEE
Confidence 3333 899999999876322111 2445554433 489999999999986332211 1222222222 38999
Q ss_pred EeccCCCCChHHHHHHHHHhh
Q 029158 173 MVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++||+++.|+.+++..+.+.+
T Consensus 140 e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 140 EVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp EEBTTTTTTHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999988765
No 224
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=115.94 Aligned_cols=149 Identities=17% Similarity=0.092 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..+|+++|.+|+|||||+-++.... ..+..++|..+. +...+..+.+|||+| ++.+..+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~----fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG----------qErFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT----FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG----------QERFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc----cCccCCceeeeeEEEEEEEEcCceEEEEEEeccc----------hHhhhcc
Confidence 4789999999999999999999873 445555555433 333357899999999 4667777
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcH-HHHHHHHhh----CCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS----QTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNS 166 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 166 (198)
...|+++ +.++|+|.|..+..+-..+ .|++.+..+ ++-.++|.||+|..+...+ ++-.... ..
T Consensus 77 TpSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfA-------r~ 146 (209)
T KOG0080|consen 77 TPSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFA-------RK 146 (209)
T ss_pred CHhHhcc---CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHH-------Hh
Confidence 8888887 7889999999764333333 345666544 3456789999997643221 1111111 12
Q ss_pred CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 167 LVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
..+-++++|||+.+|++..|+.+.+.+
T Consensus 147 h~~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 147 HRCLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred hCcEEEEcchhhhccHHHHHHHHHHHH
Confidence 246799999999999999999887654
No 225
>PRK00007 elongation factor G; Reviewed
Probab=99.79 E-value=4.2e-18 Score=142.98 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=88.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc----cceeec------------CCCCceeEE---EEEEeCCceEEEeCCCCc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYG 78 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~----~~~~~~------------~~~~~t~~~---~~~~~~~~~~iiDtpG~~ 78 (198)
....++|+++|.+++|||||+++|+... ...... ...++|.+. .+...+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 4457799999999999999999997421 000111 134455543 344457899999999972
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
++..+.......+|++++|+|+..++...+..++..+...++|+|+++||+|+...
T Consensus 87 -------------~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 -------------DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred -------------HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 23334555556689999999999999999999999999989999999999999753
No 226
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.79 E-value=9.4e-18 Score=122.58 Aligned_cols=153 Identities=13% Similarity=0.007 Sum_probs=94.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE-------EEeCCceEEEeCCCCccccchhHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDA 89 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~-------~~~~~~~~iiDtpG~~~~~~~~~~~~~ 89 (198)
++....+|+++|++|+|||||+++++.... ...+. +|....+ ......+.+|||+|...
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~---~~~~~-~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~---------- 70 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEF---EKKYI-PTLGVEVHPLKFYTNCGPICFNVWDTAGQEK---------- 70 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCC---CCCCC-CccceEEEEEEEEECCeEEEEEEEECCCchh----------
Confidence 445568999999999999999987765521 11121 2222211 11235789999999521
Q ss_pred HHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158 90 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 166 (198)
Q Consensus 90 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
+..+...++. .++++++++|.++..+-.. ..++..+.. .+.|+++++||+|+.......+... ... .
T Consensus 71 ~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~----~~~---~ 140 (215)
T PTZ00132 71 FGGLRDGYYI---KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQIT----FHR---K 140 (215)
T ss_pred hhhhhHHHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHH----HHH---H
Confidence 1222233333 3789999999986332222 123333332 2689999999999864321111111 111 1
Q ss_pred CCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 167 LVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
....++++||+++.|+++.+.+|.+.+
T Consensus 141 ~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 141 KNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 246799999999999999999887754
No 227
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=7.2e-18 Score=129.07 Aligned_cols=154 Identities=19% Similarity=0.248 Sum_probs=111.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-----------------------cce------eecCCCCceeEEE---EEEeC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW-----------------------GVV------RTSDKPGLTQTIN---FFKLG 66 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-----------------------~~~------~~~~~~~~t~~~~---~~~~~ 66 (198)
..+.+++++|+..+|||||+.+|+.+. .++ ....+.+.|.+.. +....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 456789999999999999999998531 001 1122344555543 33335
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhC-CcEEEE
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVV 138 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~-~p~iiv 138 (198)
++++++|+||+ .++...++.+..+||..++|+|++.+ ...++.+.+...+..+ ..+|++
T Consensus 85 ~~~tIiDaPGH-------------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGH-------------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred ceEEEeeCCch-------------HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 67999999997 77888999999999999999999986 5566777777777666 457899
Q ss_pred EeccCCCCcH--HHHHHHHHHHHHHHhccCC--CCCcEEeccCCCCChHHH
Q 029158 139 LTKTDTVFPI--DVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 139 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~--~~~v~~~Sa~~~~gi~~l 185 (198)
+||+|+++.. ..++....+........-. ..+++|+|+..|+|+.+-
T Consensus 152 vNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 152 VNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 9999999743 3445555555533333222 478999999999988653
No 228
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.79 E-value=8.1e-19 Score=115.65 Aligned_cols=158 Identities=17% Similarity=0.168 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
...+.++|-.++|||||+|.++..+ ...+-..|.....+.. ...+.+||.||. ..+..+.+.|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~----~~edmiptvGfnmrk~tkgnvtiklwD~gGq----------~rfrsmWery 85 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQ----YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------PRFRSMWERY 85 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeecc----chhhhcccccceeEEeccCceEEEEEecCCC----------ccHHHHHHHH
Confidence 4568999999999999999988753 2223334444443332 467899999994 2335555566
Q ss_pred HhcccccceEEEEEeCCCCC--CcCcHHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
.+. +++++|++|+++.- +..-.++-+.+. -.++|+++++||.|+..+-......+++- +.......+.++
T Consensus 86 cR~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmg--L~sitdREvcC~ 160 (186)
T KOG0075|consen 86 CRG---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMG--LSSITDREVCCF 160 (186)
T ss_pred hhc---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhC--ccccccceEEEE
Confidence 655 89999999998721 111223333333 33799999999999988765544433322 223334457799
Q ss_pred EeccCCCCChHHHHHHHHHhhcccc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
.+||+...|++.+.+||.++....|
T Consensus 161 siScke~~Nid~~~~Wli~hsk~~~ 185 (186)
T KOG0075|consen 161 SISCKEKVNIDITLDWLIEHSKSLR 185 (186)
T ss_pred EEEEcCCccHHHHHHHHHHHhhhhc
Confidence 9999999999999999999987654
No 229
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4e-18 Score=126.32 Aligned_cols=162 Identities=24% Similarity=0.344 Sum_probs=127.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC--CCCceeEEE-----EE------------------------EeCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--KPGLTQTIN-----FF------------------------KLGT 67 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~--~~~~t~~~~-----~~------------------------~~~~ 67 (198)
....+|.++|....|||||..+|.+.+.. ..+. ..+.|.... ++ ..-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~-~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTD-RHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeee-chhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 45678999999999999999999986310 0100 011111100 00 0113
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCC
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTV 145 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~ 145 (198)
.+.|+|.||+ +-++..++.+....|++++|+.+++.. +.+..+++..++-.+ ..+|+|-||+|++
T Consensus 87 ~VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 87 RVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred EEEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 6899999997 788899999999999999999999854 566788888887766 6789999999999
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 146 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+.+...+.+++++++.....-.+.|++|+||.++.|++.|+++|.+..+
T Consensus 154 ~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 154 SRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred cHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 9998888888999888877777899999999999999999999998765
No 230
>PRK12739 elongation factor G; Reviewed
Probab=99.78 E-value=5.7e-18 Score=142.23 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=87.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcc----ceeec------------CCCCceeEE---EEEEeCCceEEEeCCCC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~----~~~~~------------~~~~~t~~~---~~~~~~~~~~iiDtpG~ 77 (198)
+....++|+++|.+++|||||+++|+.... ..... ...++|.+. .+...+..+.++||||+
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 345678899999999999999999975311 11111 133455443 34445788999999996
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
. .+..+.......+|++++|+|+..+....+..++..+...++|+|+++||+|+...
T Consensus 84 ~-------------~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 V-------------DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred H-------------HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2 22334555555689999999999998888888888888889999999999999854
No 231
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.78 E-value=6.2e-17 Score=119.91 Aligned_cols=129 Identities=22% Similarity=0.178 Sum_probs=86.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
.....+|+++|.+|+|||||+|+|++. .....+...++|....... .+..+.+|||||+++........+.....+
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 345789999999999999999999998 4455666666666654332 357899999999987632122222222233
Q ss_pred HHHHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-C----CcEEEEEeccCCCCcH
Q 029158 95 KEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI 148 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-~----~p~iiv~nK~Dl~~~~ 148 (198)
..|+.. ...|+++|+..... .....+..+++.+... + .++++|+||+|...+.
T Consensus 107 ~~~l~~-~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKK-KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhc-cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 344432 24678888875543 3445556677766642 2 6899999999997653
No 232
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.78 E-value=6.8e-19 Score=137.02 Aligned_cols=181 Identities=19% Similarity=0.162 Sum_probs=127.4
Q ss_pred ccCCcCCCC--CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeC---CceEEEeCCCCccccch
Q 029158 9 AAKVSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 9 ~~~~~~~~~--~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~iiDtpG~~~~~~~ 83 (198)
.......+| ++..++++++|.|++|||||++.+...+ ..+.+|+.||...-+.+.+ -.++++||||+.+....
T Consensus 154 Vrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 154 VRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred HHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchh
Confidence 344555566 5778899999999999999999998875 6789999999887655543 46899999998764322
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcC---cHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR---DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIE 158 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 158 (198)
+.... +-..-..+.++.. +|+|++|.++..... ..+++..+... +.|+|+|+||+|+..++++.+..+.+.
T Consensus 232 drN~I--EmqsITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 232 DRNII--EMQIITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred hhhHH--HHHHHHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHH
Confidence 22111 1111123334333 499999998733222 23445555543 799999999999999887766655555
Q ss_pred HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158 159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
+.+... ..++++.+|+.+.+|+.++....++.+-..|
T Consensus 308 ~~~~~~--~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 308 QTIIDD--GNVKVVQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred HHHHhc--cCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence 554433 2488999999999999999998888765544
No 233
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.77 E-value=2.2e-17 Score=121.08 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=98.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
....|+++|.+|+|||||++.+++...........++. . .....+.++.++||||.. ...+.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~-i~~~~~~~i~~vDtPg~~----------------~~~l~ 99 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-T-VVTGKKRRLTFIECPNDI----------------NAMID 99 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-E-EEecCCceEEEEeCCchH----------------HHHHH
Confidence 34569999999999999999998752111122222221 1 122346789999999841 12222
Q ss_pred cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCCcH-HHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
....+|.+++++|++.++...+..++..+...+.|.+ +|+||+|+.... ..++..+.+++.+......+.+++++||+
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 2345899999999998887777788888887788855 599999998543 34556666766555333346899999998
Q ss_pred CC
Q 029158 178 SG 179 (198)
Q Consensus 178 ~~ 179 (198)
+.
T Consensus 180 ~~ 181 (225)
T cd01882 180 VH 181 (225)
T ss_pred cC
Confidence 76
No 234
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.77 E-value=2.7e-18 Score=113.36 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=106.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEEEEe-----CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINFFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
..+.+++|.+|+|||+|+-++... .+..+|..|+ .+..+... ...+.||||+| .+.+..+.
T Consensus 8 LfkllIigDsgVGKssLl~rF~dd---tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG----------qErFrtit 74 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADD---TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAG----------QERFRTIT 74 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhc---ccccceEEEeeeeEEEEEeecCCcEEEEEEeeccc----------HHHHHHHH
Confidence 345789999999999999999876 3444443222 22222222 35789999999 47778888
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
..|+.. .+++|+|.|...+-+-.. ..|++.++.. .+|-++|+||.|.+...-... +..+... ...++.+
T Consensus 75 styyrg---thgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t--~dAr~~A---~~mgie~ 146 (198)
T KOG0079|consen 75 STYYRG---THGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDT--EDARAFA---LQMGIEL 146 (198)
T ss_pred HHHccC---CceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeeh--HHHHHHH---HhcCchh
Confidence 888877 789999999987544333 5567777654 478899999999986432221 1111111 1236889
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
|++|||..+|++..|..|.++.
T Consensus 147 FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 147 FETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred eehhhhhcccchHHHHHHHHHH
Confidence 9999999999999999887653
No 235
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.77 E-value=1.6e-17 Score=139.63 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=84.6
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc----eeecC------------CCCceeEE---EEEEeCCceEEEeCCCC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTI---NFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~~~~------------~~~~t~~~---~~~~~~~~~~iiDtpG~ 77 (198)
+....++|+++|.+++|||||+++|+..... ....+ ..++|.+. .+...+..+.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 3456779999999999999999999753211 01111 23455443 34445788999999998
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
.+- ..+.......+|++++|+|+..+....+..++..+...++|+++++||+|+...
T Consensus 86 ~~~-------------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDF-------------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cch-------------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 431 112222333489999999999988887788888888889999999999999853
No 236
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.77 E-value=2.2e-17 Score=123.79 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=82.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc----ceeec----------CCC------CceeE---EEEEEeCCceEEEeCCCC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS----------DKP------GLTQT---INFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~----~~~~~----------~~~------~~t~~---~~~~~~~~~~~iiDtpG~ 77 (198)
.++|+++|++|+|||||+++|+.... ...+. ++. +.+.. ..+...+..+.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 46799999999999999999985311 01110 100 11111 223344778999999996
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHH
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 157 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 157 (198)
.+ +..+.......+|++++|+|+..+.......+++.....++|+++++||+|+..... ....+.+
T Consensus 82 ~d-------------f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~-~~~~~~l 147 (267)
T cd04169 82 ED-------------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDP-LELLDEI 147 (267)
T ss_pred hH-------------HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCH-HHHHHHH
Confidence 21 112222233448999999999987766566677777777899999999999876532 2334555
Q ss_pred HHHH
Q 029158 158 EESL 161 (198)
Q Consensus 158 ~~~~ 161 (198)
++.+
T Consensus 148 ~~~l 151 (267)
T cd04169 148 EEEL 151 (267)
T ss_pred HHHH
Confidence 5544
No 237
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.5e-17 Score=124.77 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=117.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccc-------------------------------eeecCCCCceeEEEE---EEe
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGV-------------------------------VRTSDKPGLTQTINF---FKL 65 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~t~~~~~---~~~ 65 (198)
...+++-+|...-||||||.+|+...+. -....+++.|.++.+ ++.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4578999999999999999999964200 011224557777664 334
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDT 144 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl 144 (198)
...|.+.||||+ +.+.+.+..+...||++++++|+..|+.++.+.+.....-.+ ..+++.+||+||
T Consensus 85 KRkFIiADTPGH-------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGH-------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcH-------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 788999999998 788889999999999999999999999888887755555556 457889999999
Q ss_pred CCc--HHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChH
Q 029158 145 VFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 183 (198)
Q Consensus 145 ~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~ 183 (198)
.+- +..+.+...+.............++|+||..|+|+-
T Consensus 152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 864 345566677777777777667899999999998864
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.76 E-value=2.7e-17 Score=133.58 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-cce---ee----------cCC------CCceeE---EEEEEeCCceEEEeCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVV---RT----------SDK------PGLTQT---INFFKLGTKLCLVDLP 75 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~---~~----------~~~------~~~t~~---~~~~~~~~~~~iiDtp 75 (198)
....+|+++|++++|||||+++|+... .+. .+ .++ .+.+.. ..+...+..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 467899999999999999999997421 010 10 000 111111 2244446789999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158 76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 146 (198)
Q Consensus 76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 146 (198)
|+.+ +..........+|++++|+|+..+.......++......++|+++++||+|+..
T Consensus 88 G~~d-------------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHED-------------FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred Cchh-------------hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 9732 122222233448999999999988776667778777778999999999999865
No 239
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.76 E-value=2.9e-17 Score=125.50 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=103.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE----E-----------------------EeCCceEEEeCCC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----F-----------------------KLGTKLCLVDLPG 76 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~----~-----------------------~~~~~~~iiDtpG 76 (198)
|+++|.|++|||||+|+|++.. ..+.+++++|.+... . ....++++|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5799999999999999999984 567888888865331 1 0124689999999
Q ss_pred CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------------cCcHH-----H--------------
Q 029158 77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------------PRDHE-----L-------------- 124 (198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------------~~~~~-----~-------------- 124 (198)
+...... ...+..+++...+.+|++++|+|+..... ..+.+ +
T Consensus 79 lv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~ 152 (318)
T cd01899 79 LVPGAHE------GKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEK 152 (318)
T ss_pred CCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8543211 13345566666777999999999974100 00100 0
Q ss_pred ------------------------------HHHH------------------------HhhCCcEEEEEeccCCCCcHHH
Q 029158 125 ------------------------------ISLM------------------------ERSQTKYQVVLTKTDTVFPIDV 150 (198)
Q Consensus 125 ------------------------------~~~~------------------------~~~~~p~iiv~nK~Dl~~~~~~ 150 (198)
...+ ....+|+|+|+||.|+....+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~ 232 (318)
T cd01899 153 IVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN 232 (318)
T ss_pred HHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH
Confidence 0000 0113599999999998654432
Q ss_pred HHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH-HHHHhhcc
Q 029158 151 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT-VLSKIARF 195 (198)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~-~i~~~~~~ 195 (198)
. +.++.. ....+++++||+.+.+++++.+ .+.++++.
T Consensus 233 ~---~~l~~~-----~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 233 I---SKLRLK-----YPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred H---HHHHhh-----CCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 2 222221 1246799999999999999998 68887753
No 240
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=7.3e-18 Score=117.83 Aligned_cols=148 Identities=18% Similarity=0.133 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-------eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..+|+++|.+++|||-|+.++...+ .....-.|..+.+.. .....+||||+|. +++..+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnE----F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ----------ERyrAi 79 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNE----FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ----------ERYRAI 79 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccc----cCcccccceeEEEEeeceeecCcEEEEeeecccch----------hhhccc
Confidence 5679999999999999999999875 333333444444333 3457899999994 555666
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCc-CcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLV 168 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (198)
...|++. +-++++|.|.+...+- .-..|++.++.+ ++++++|+||+||..-..... ....+++ ..+
T Consensus 80 tSaYYrg---AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae------~~~ 150 (222)
T KOG0087|consen 80 TSAYYRG---AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE------KEG 150 (222)
T ss_pred cchhhcc---cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHH------hcC
Confidence 7777777 7889999999753332 335677777765 689999999999976322211 1112221 125
Q ss_pred CCcEEeccCCCCChHHHHHHHHH
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
..++++||.++.|++..|+.+..
T Consensus 151 l~f~EtSAl~~tNVe~aF~~~l~ 173 (222)
T KOG0087|consen 151 LFFLETSALDATNVEKAFERVLT 173 (222)
T ss_pred ceEEEecccccccHHHHHHHHHH
Confidence 78999999999999999976654
No 241
>PRK13351 elongation factor G; Reviewed
Probab=99.75 E-value=2.4e-17 Score=138.76 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=82.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc----ee------ecC------CCCceeE---EEEEEeCCceEEEeCCCC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV----VR------TSD------KPGLTQT---INFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~------~~~------~~~~t~~---~~~~~~~~~~~iiDtpG~ 77 (198)
+....++|+++|..|+|||||+++|+..... .. ..+ ..+.|.. ..+...+..+.+|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 4456789999999999999999999853210 00 000 1222322 223334678999999997
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
.+ +..+.......+|++++|+|+..+........+..+...++|+++++||+|+...
T Consensus 84 ~d-------------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 ID-------------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HH-------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 32 1222223334489999999999887777777788887778999999999998864
No 242
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=4.8e-17 Score=125.44 Aligned_cols=156 Identities=23% Similarity=0.346 Sum_probs=130.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.|+..|.-..|||||+.++.+.. .........++|.+..+++. +..+.|+|.||+ ++++..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-------------~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-------------PDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-------------HHHHHHHH
Confidence 46788999999999999999863 23344456789999988775 568999999998 77888999
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
.+....|.+++|+|+.+|+..++.+++..+...+.+ .++|+||+|+.++...+....++.+... ....++|.+|++
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l~~~~i~~~s~~ 145 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---LANAKIFKTSAK 145 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc---cccccccccccc
Confidence 998999999999999999999999999988888765 4999999999998766655555555444 446889999999
Q ss_pred CCCChHHHHHHHHHhhc
Q 029158 178 SGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 178 ~~~gi~~l~~~i~~~~~ 194 (198)
+|+|+++|.+.|.+...
T Consensus 146 ~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 146 TGRGIEELKNELIDLLE 162 (447)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999998773
No 243
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.74 E-value=9.1e-17 Score=130.50 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-cce---eec----------C------CCCceeE---EEEEEeCCceEEEeCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVV---RTS----------D------KPGLTQT---INFFKLGTKLCLVDLP 75 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~---~~~----------~------~~~~t~~---~~~~~~~~~~~iiDtp 75 (198)
...++|+++|.+++|||||+++|+... .+. .+. + ..+.+.. ..+...+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 467899999999999999999986421 111 110 0 0112221 2233447889999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158 76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 146 (198)
Q Consensus 76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 146 (198)
|+. ++..........+|++++|+|+..++......+++.+...+.|+++++||+|+..
T Consensus 89 G~~-------------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHE-------------DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred Chh-------------hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 972 2222233333459999999999988776667777777777899999999999863
No 244
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.74 E-value=7.6e-17 Score=117.34 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|.+|+||||++|.|++...........+.|..... ...+..+.++||||+.+..... .+....+.+.+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~--~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD--EEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH--HHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH--HHHHHHHHHHHH
Confidence 37999999999999999999998532222223334443332 2347889999999997764332 122233333333
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHHH-----HHHHHHHhccCCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAM-----QIEESLKANNSLV 168 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~ 168 (198)
......+++++|++.. .+...+...++.+... -..+++|+|.+|...+...++... .+++.+... +
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c---~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC---G 154 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT---T
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc---C
Confidence 3445689999999998 6777787777776642 357999999999887766544433 244444433 3
Q ss_pred CCcEEeccC------CCCChHHHHHHHHHhhc
Q 029158 169 QPVMMVSSK------SGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~~v~~~Sa~------~~~gi~~l~~~i~~~~~ 194 (198)
.+++.++.+ ....+.+|++.|.+.++
T Consensus 155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence 467777766 34567777777766544
No 245
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.74 E-value=3.1e-17 Score=126.41 Aligned_cols=166 Identities=23% Similarity=0.185 Sum_probs=98.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCCceeEEEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+|+|.+|+|||||||+|.+-. .-+...+...||....-+.. -+++++||.||+|...- -.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f----------~~ 103 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNF----------PP 103 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS------------H
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC----------CH
Confidence 45789999999999999999998631 11111112234444443333 36899999999876421 12
Q ss_pred HHHHhc--ccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC-c------------HHHHHHHHHHHH
Q 029158 95 KEYVST--RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-P------------IDVARRAMQIEE 159 (198)
Q Consensus 95 ~~~~~~--~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~------------~~~~~~~~~~~~ 159 (198)
..|+.. ....|.++++.+.. +...+.++.+.++..++|+++|-||+|..- . .-++++.+.+.+
T Consensus 104 ~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 104 EEYLKEVKFYRYDFFIIISSER--FTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HHHHHHTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HHHHHHccccccCEEEEEeCCC--CchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 233332 23478766666554 688888899999999999999999999611 1 113445555666
Q ss_pred HHHhccCCCCCcEEeccCC--CCChHHHHHHHHHhhcccc
Q 029158 160 SLKANNSLVQPVMMVSSKS--GAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~--~~gi~~l~~~i~~~~~~~r 197 (198)
.++.......++|.+|+.+ ..++..|.+.+.+.++..|
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 6665555567899999976 5678889999988777654
No 246
>PRK13768 GTPase; Provisional
Probab=99.74 E-value=6.3e-17 Score=120.60 Aligned_cols=123 Identities=25% Similarity=0.314 Sum_probs=80.4
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHH-----hhCCcEEEEEec
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK 141 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK 141 (198)
.++.++||||..+... .+..+..+.+.+... . .+++++|+|++......+......+. ..+.|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~---~~~~~~~~~~~l~~~-~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFA---FRESGRKLVERLSGS-S-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHh---hhHHHHHHHHHHHhc-C-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 4799999999644221 122223333332222 2 78999999998755555544333222 458999999999
Q ss_pred cCCCCcHHHHHHHHHHHH------------------------HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 142 TDTVFPIDVARRAMQIEE------------------------SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 142 ~Dl~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+|+....+.++....+.. .+.. .....+++++|+++++|++++.++|.+.+..
T Consensus 172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-TGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-HCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 999987665544443331 1111 1224689999999999999999999988754
No 247
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.5e-16 Score=104.29 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=103.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..+|+++|..|+|||.|++++...- ..+..+.|..+. +......+++|||+| ++.+..+
T Consensus 7 lfkivlvgnagvgktclvrrftqgl----fppgqgatigvdfmiktvev~gekiklqiwdtag----------qerfrsi 72 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL----FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG----------QERFRSI 72 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC----CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc----------hHHHHHH
Confidence 4689999999999999999998762 333344444332 222346799999999 3666777
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
...|++. +++++++.|.+..++-.- -+|+..++.+ ++--|+|.||+|+.+..+.. +++-+.+.... ..
T Consensus 73 tqsyyrs---ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp---~qigeefs~~q--dm 144 (213)
T KOG0095|consen 73 TQSYYRS---AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVP---QQIGEEFSEAQ--DM 144 (213)
T ss_pred HHHHhhh---cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhh---HHHHHHHHHhh--hh
Confidence 7777776 889999999987433322 3566666654 34558999999998765433 33333333221 24
Q ss_pred CcEEeccCCCCChHHHHHHHHH
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
-++++||+..+|++.||..+..
T Consensus 145 yfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 145 YFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhhhcccchhhHHHHHHHHHH
Confidence 4789999999999999987654
No 248
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.73 E-value=1.1e-16 Score=125.81 Aligned_cols=85 Identities=22% Similarity=0.213 Sum_probs=63.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------------------eCCceEEEeC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL 74 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------~~~~~~iiDt 74 (198)
.+|+++|.||+|||||+|+|++.. ....+++++|.+..... ...+++++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 579999999999999999999874 45678888886544211 1246889999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 029158 75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 114 (198)
Q Consensus 75 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 114 (198)
||+....... ..+...++.....+|++++|+|+.
T Consensus 80 aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9986542211 234556766777799999999997
No 249
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.9e-17 Score=110.73 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=108.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeec---CCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~---~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...|+++|.-+||||||+.++-......... ....+|......+ ....+.+||.-|. ...+..|+.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQ------e~lrSlw~~-- 88 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQ------ESLRSLWKK-- 88 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCCh------HHHHHHHHH--
Confidence 3458999999999999999876542111111 1112333333322 2577999999993 334444444
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
|+.. +++++|++|+...-.-.+ ...++.+. ..+.|+++.+||.|+.+..+..++...+.. .........
T Consensus 89 --yY~~---~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~ 162 (197)
T KOG0076|consen 89 --YYWL---AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDN 162 (197)
T ss_pred --HHHH---hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccC
Confidence 4444 899999999987211111 11122222 237999999999999887776666555554 455667789
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++.++||.+|+|+++-..|+...+..
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHHhh
Confidence 99999999999999999999887654
No 250
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.73 E-value=6.2e-17 Score=104.04 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 101 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (198)
.+++++|+.|+|||||.++|-+.+.. .-.|+.+++...+ .+||||--.. + ..+....+...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l------ykKTQAve~~d~~----~IDTPGEy~~------~---~~~Y~aL~tt~ 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL------YKKTQAVEFNDKG----DIDTPGEYFE------H---PRWYHALITTL 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh------hcccceeeccCcc----ccCCchhhhh------h---hHHHHHHHHHh
Confidence 57999999999999999999987411 1134555554433 3999993110 1 22223344445
Q ss_pred cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g 181 (198)
..+|.+++|..+.++.+.-.- ..+.....|+|-|++|.|+.+..+.+.....+.+.- ..++|.+|+.+..|
T Consensus 63 ~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG------a~~IF~~s~~d~~g 133 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAG------AEPIFETSAVDNQG 133 (148)
T ss_pred hccceeeeeecccCccccCCc---ccccccccceEEEEecccccchHhHHHHHHHHHHcC------CcceEEEeccCccc
Confidence 568999999888764322221 112233567999999999998766655555555442 47899999999999
Q ss_pred hHHHHHHHHHh
Q 029158 182 IRSLRTVLSKI 192 (198)
Q Consensus 182 i~~l~~~i~~~ 192 (198)
+++|++++...
T Consensus 134 v~~l~~~L~~~ 144 (148)
T COG4917 134 VEELVDYLASL 144 (148)
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 251
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.9e-16 Score=104.60 Aligned_cols=151 Identities=18% Similarity=0.197 Sum_probs=99.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEe--CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..+++++|.+.+|||||+.+.++.. . .+....|..+ +++.. ...+++|||.|. +.+..+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS-F---t~afvsTvGidFKvKTvyr~~kRiklQiwDTagq----------Eryrti 86 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS-F---TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ----------ERYRTI 86 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc-c---ccceeeeeeeeEEEeEeeecccEEEEEEEecccc----------hhhhHH
Confidence 5699999999999999999999873 1 1111222222 22222 467999999995 233444
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV 168 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 168 (198)
.-.|+++ ++++++++|.....+-+. ..|.-++. ..+.|+|+|.||||+.++.... +....+.+.+ +
T Consensus 87 TTayyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L------G 157 (193)
T KOG0093|consen 87 TTAYYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQL------G 157 (193)
T ss_pred HHHHhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHh------C
Confidence 4455555 899999999976322111 22322232 2378999999999998764321 1112222222 4
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..+|++|||.+-|++++++.+...+.
T Consensus 158 fefFEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 158 FEFFETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred hHHhhhcccccccHHHHHHHHHHHHH
Confidence 68999999999999999998877654
No 252
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.72 E-value=4.7e-16 Score=113.84 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=98.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee--EEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~--~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.+|+++|++|+|||||+++|.+.. ....++.+.. ....... ...+.+|||+|. +.+..+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq----------~~~~~~~~ 72 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE---FPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ----------EEYRSLRP 72 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc---CcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH----------HHHHHHHH
Confidence 789999999999999999999883 2222222211 1111111 244899999995 23344455
Q ss_pred HHHhcccccceEEEEEeCCC--CCCcCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHH----------HHHHHHH
Q 029158 96 EYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARR----------AMQIEES 160 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~--~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~~~ 160 (198)
.|+.. ++++++++|... ........+...+... +.|+++|.||+|+......... .......
T Consensus 73 ~y~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 73 EYYRG---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred HHhcC---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 55555 888999998875 2223334455555543 4899999999999876532211 1111111
Q ss_pred HHhccCCCCCcEEeccC--CCCChHHHHHHHHHhh
Q 029158 161 LKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKIA 193 (198)
Q Consensus 161 ~~~~~~~~~~v~~~Sa~--~~~gi~~l~~~i~~~~ 193 (198)
..........++.+|++ ++.++++++..+...+
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 11111112338999999 9999999999887765
No 253
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.6e-17 Score=113.08 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=109.3
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.......+|+++|--+|||||++..|-..+.+. ..+..+.... .+...+.++.+||..|... . ..+..
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-tvPTiGfnVE-~v~ykn~~f~vWDvGGq~k------~----R~lW~ 79 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TVPTIGFNVE-TVEYKNISFTVWDVGGQEK------L----RPLWK 79 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCccc-CCCcccccee-EEEEcceEEEEEecCCCcc------c----ccchh
Confidence 345567789999999999999999998774222 2222221111 2334478999999999521 1 23344
Q ss_pred HHHhcccccceEEEEEeCCCCCC--cCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
.|+.. .+++|||+|+++... +...++...+... +.|+++.+||.|++.+-...++.+.+.- .........
T Consensus 80 ~Y~~~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l--~~l~~~~w~ 154 (181)
T KOG0070|consen 80 HYFQN---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGL--HSLRSRNWH 154 (181)
T ss_pred hhccC---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhh--hccCCCCcE
Confidence 55554 899999999987322 2222333333322 6899999999999876555444443332 122334577
Q ss_pred cEEeccCCCCChHHHHHHHHHhhccc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
+..++|.+|+|+.+.++|+.+.+...
T Consensus 155 iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 155 IQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred EeeccccccccHHHHHHHHHHHHhcc
Confidence 89999999999999999999987653
No 254
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.72 E-value=2.4e-16 Score=118.75 Aligned_cols=170 Identities=21% Similarity=0.349 Sum_probs=98.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeec-CCCC------ceeEEE-----EEE--eCCceEEEeCCCCccccchhH--
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPG------LTQTIN-----FFK--LGTKLCLVDLPGYGFAYAKEE-- 85 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-~~~~------~t~~~~-----~~~--~~~~~~iiDtpG~~~~~~~~~-- 85 (198)
.+|+++|.+|+|||||+|.|++.. +.... ..+. .+..+. ... ...+++++||||+|+......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 579999999999999999999973 22221 1111 111111 111 135789999999988654322
Q ss_pred --HHHHHHHHHHHHHhc----------ccccceEEEEEeCC-CCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHH
Q 029158 86 --VKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 152 (198)
Q Consensus 86 --~~~~~~~~~~~~~~~----------~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 152 (198)
+...++.....++.. ....++++|+++++ +++...|.+.++.+.. .+++|.|+.|+|..+++++..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~el~~ 162 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPEELQA 162 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCHHHHHH
Confidence 212222222223221 12368899999975 4788888998998886 699999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCcEEeccCCCCCh-HHHHHHHHHhhccc
Q 029158 153 RAMQIEESLKANNSLVQPVMMVSSKSGAGI-RSLRTVLSKIARFA 196 (198)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi-~~l~~~i~~~~~~~ 196 (198)
.+..+.+.+.... ++++.......+.- .+....+....+++
T Consensus 163 ~k~~i~~~l~~~~---I~~f~f~~~~~~~~e~~~~~~~~~~~PFa 204 (281)
T PF00735_consen 163 FKQRIREDLEENN---IKIFDFPEDDDDDEEIEENQKIRSMLPFA 204 (281)
T ss_dssp HHHHHHHHHHHTT-----S----------HCHHHHHHHHHC-SEE
T ss_pred HHHHHHHHHHHcC---ceeeccccccccccccccccccccceeeE
Confidence 9999999887653 55555433322110 23444555555543
No 255
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.1e-16 Score=112.21 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=103.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
..+.|+++|+++||||+|+-.|....... -+...+.. ..+.....+++++|.||+. .....+.+++
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~---TvtSiepn~a~~r~gs~~~~LVD~PGH~----------rlR~kl~e~~ 103 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRG---TVTSIEPNEATYRLGSENVTLVDLPGHS----------RLRRKLLEYL 103 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccC---eeeeeccceeeEeecCcceEEEeCCCcH----------HHHHHHHHHc
Confidence 44679999999999999999998763111 11111111 2233334557999999962 2234455666
Q ss_pred hcccccceEEEEEeCCCCCCcCc---HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc-----
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD---HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----- 165 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~---~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----- 165 (198)
.....+.+++||+|+........ ..+++.+.. ...|++++.||.|+..+...+.+.+.++..+....
T Consensus 104 ~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa 183 (238)
T KOG0090|consen 104 KHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSA 183 (238)
T ss_pred cccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 66667899999999976322211 223344432 35899999999999987665555555444333111
Q ss_pred ----------------------------CCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 166 ----------------------------SLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 166 ----------------------------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
...+.+.+.|++++ +++++.+||.+.+
T Consensus 184 ~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 184 LRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred hhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01355888999998 8999999998764
No 256
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.72 E-value=3.3e-16 Score=112.83 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=82.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce---eEEEEEE--------eCCceEEEeCCCCccccchhHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t---~~~~~~~--------~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
+|+++|.+|+|||||++++++... ...+.+|. ....... ....+.+|||+|.. .+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f---~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e----------~~~ 68 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV---LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE----------SVK 68 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch----------hHH
Confidence 799999999999999999998742 22222221 1111111 12468999999952 224
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----------------------hCCcEEEEEeccCCCCcH
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----------------------SQTKYQVVLTKTDTVFPI 148 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----------------------~~~p~iiv~nK~Dl~~~~ 148 (198)
.+...++.. +|++++|+|.++..+... ..|+..+.. .+.|+++|+||+|+.+..
T Consensus 69 ~l~~~~yr~---ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 69 STRAVFYNQ---VNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHHHhCc---CCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 444455554 899999999987433222 234444432 258999999999997543
Q ss_pred HHHH-----HHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 149 DVAR-----RAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 149 ~~~~-----~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
.... ....+.++ .+.+.+.++|...
T Consensus 146 ~~~~~~~~~~~~~ia~~------~~~~~i~~~c~~~ 175 (202)
T cd04102 146 ESSGNLVLTARGFVAEQ------GNAEEINLNCTNG 175 (202)
T ss_pred ccchHHHhhHhhhHHHh------cCCceEEEecCCc
Confidence 1111 11122221 2577888888754
No 257
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=5.2e-16 Score=103.21 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=97.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..+++++|+.|+|||.|+.++...+. .+....|..+. +......++||||+| ++.+...
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kf----kDdssHTiGveFgSrIinVGgK~vKLQIWDTAG----------QErFRSV 74 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKF----KDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG----------QERFRSV 74 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhh----cccccceeeeeecceeeeecCcEEEEEEeeccc----------HHHHHHH
Confidence 46899999999999999999998742 22222333333 223346799999999 4677888
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
.+.|+++ +.+.++|.|+.+..+-+. ..|+...+ ..++-++++.||.|+....++.- .+..+..+ ....
T Consensus 75 tRsYYRG---AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf--lEAs~Faq---Enel 146 (214)
T KOG0086|consen 75 TRSYYRG---AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEASRFAQ---ENEL 146 (214)
T ss_pred HHHHhcc---ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH--HHHHhhhc---ccce
Confidence 8889888 678899999976322111 12332222 22566788999999987654321 11112211 2235
Q ss_pred CcEEeccCCCCChHHHHHHHH
Q 029158 170 PVMMVSSKSGAGIRSLRTVLS 190 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~ 190 (198)
-++++||++|+|+++.|=...
T Consensus 147 ~flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 147 MFLETSALTGENVEEAFLKCA 167 (214)
T ss_pred eeeeecccccccHHHHHHHHH
Confidence 789999999999999875443
No 258
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.70 E-value=3.8e-17 Score=114.39 Aligned_cols=129 Identities=18% Similarity=0.263 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
..+.|+++|++|+|||+|...|..+.....+... .....+.. .+..+.++|+||+..-. ..+. +
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rlr---------~~~~-~ 68 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRLR---------SKLL-D 68 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEEECCGSSTCGTCECEEEETT-HCCC---------HHHH-H
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCceEEeecCCCCEEEEEECCCcHHHH---------HHHH-H
Confidence 4578999999999999999999987422222221 11111111 25689999999974321 1112 1
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc----HHHHHHHH-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD----HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 162 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~----~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 162 (198)
.+.....+.+|+||+|++. ....- ..+++.+. ....|++++.||+|+........+...++..+.
T Consensus 69 ~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~ 142 (181)
T PF09439_consen 69 ELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEID 142 (181)
T ss_dssp HHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHH
T ss_pred hhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHH
Confidence 1112344899999999974 11111 12233332 236899999999999987655555555554443
No 259
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.5e-16 Score=103.20 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=106.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
..+|+++|-.++||||++..|+....... .+.+.-.+ ++...+..+.+||..|. +.+..+.+.|+.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~---ipTvGFnvetVtykN~kfNvwdvGGq----------d~iRplWrhYy~ 83 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQ----------DKIRPLWRHYYT 83 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc---ccccceeEEEEEeeeeEEeeeeccCc----------hhhhHHHHhhcc
Confidence 67899999999999999999988742221 11111111 23334677999999994 233566677777
Q ss_pred cccccceEEEEEeCCCCCC--cCcHHHHHHHH---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 100 TRVSLKRVCLLIDTKWGVK--PRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
+ ..++|||+|+.+.-. +...++...+. -...++++.+||.|++.+-..+++...++-. ...+...-+.++
T Consensus 84 g---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe--~~r~~~W~vqp~ 158 (180)
T KOG0071|consen 84 G---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELE--RIRDRNWYVQPS 158 (180)
T ss_pred C---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccc--cccCCccEeecc
Confidence 7 678999999976311 11122333332 2368999999999999876665555444422 133445668999
Q ss_pred ccCCCCChHHHHHHHHHhhc
Q 029158 175 SSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (198)
||.+|.|+.+-+.|+...+.
T Consensus 159 ~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 159 CALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccccchhHHHHHHHHHhhcc
Confidence 99999999999999998765
No 260
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.2e-15 Score=113.00 Aligned_cols=159 Identities=22% Similarity=0.337 Sum_probs=118.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccc-----eeecCCCCceeEEEEEEe------------CCceEEEeCCCCccccchh
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYAKE 84 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~-----~~~~~~~~~t~~~~~~~~------------~~~~~iiDtpG~~~~~~~~ 84 (198)
.++.++|...+|||||.++|..-..- ...+.+.+.|.|..+... ..+++++|+||+
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH------- 80 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH------- 80 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-------
Confidence 68999999999999999998754211 112223445555544442 236799999998
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH----HHHHHHHHHHH
Q 029158 85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID----VARRAMQIEES 160 (198)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~ 160 (198)
..+++..+.+....|+.++|+|+..|.+....+.+-.-+..-...++|+||.|...++. .++....++..
T Consensus 81 ------asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 81 ------ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred ------HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 67788899999999999999999999888887776555555567889999999887643 34455666666
Q ss_pred HHhccCC-CCCcEEeccCCC----CChHHHHHHHHHhh
Q 029158 161 LKANNSL-VQPVMMVSSKSG----AGIRSLRTVLSKIA 193 (198)
Q Consensus 161 ~~~~~~~-~~~v~~~Sa~~~----~gi~~l~~~i~~~~ 193 (198)
+...... ..|++++||..| +++.+|.+.+.+.+
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 6655533 489999999999 88888888887654
No 261
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.69 E-value=4e-15 Score=113.99 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
+..+.|+||+|.+... .... ..+|.++++++...+ .+.+..+. .......++|+||+|+.
T Consensus 148 g~d~viieT~Gv~qs~---------~~i~-------~~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSE---------TAVA-------GMVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccch---------hHHH-------HhCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence 4689999999987431 1111 138999999874432 22222111 01123349999999999
Q ss_pred CcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 146 FPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
...........+...+.... ....|++++||+++.|+++|++.|.+++++.
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 77666666666776665422 1236899999999999999999999987643
No 262
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.69 E-value=8.5e-16 Score=131.84 Aligned_cols=146 Identities=22% Similarity=0.320 Sum_probs=97.5
Q ss_pred CHHHHHHHHhcCccceeecCCCCceeEEEEEEe---------------------CCceEEEeCCCCccccchhHHHHHHH
Q 029158 33 GKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 33 GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
+||||+.+|.+. .++ .....+.|+.+..+.. .+.+.||||||+ .
T Consensus 473 ~KTtLLD~iR~t-~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh-------------e 537 (1049)
T PRK14845 473 HNTTLLDKIRKT-RVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH-------------E 537 (1049)
T ss_pred ccccHHHHHhCC-Ccc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc-------------H
Confidence 499999999987 332 3333456665432211 124899999996 2
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--------------HHHHHHHH
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------------VARRAMQI 157 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------------~~~~~~~~ 157 (198)
.+..........+|++++|+|+++++...+.+.+..+...++|+++|+||+|+..... .+....++
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el 617 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTEL 617 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHH
Confidence 2222222234558999999999998888888888888888899999999999964211 11112222
Q ss_pred HHH-------HHh------------ccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 158 EES-------LKA------------NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 158 ~~~-------~~~------------~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
... +.. ......+++++||++|+|+++|.++|....
T Consensus 618 ~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 618 EIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111 111 123367899999999999999999886543
No 263
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.69 E-value=1.5e-15 Score=111.52 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=62.5
Q ss_pred CceEEEeCCCCcccc---chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEecc
Q 029158 67 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT 142 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~ 142 (198)
.+++++||||+.... ........+..+...|+... .+++++|+|++.++...+ .++.+.+...+.|+++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECC
Confidence 589999999985431 12335566777777777753 458999999998888777 578888888899999999999
Q ss_pred CCCCcH
Q 029158 143 DTVFPI 148 (198)
Q Consensus 143 Dl~~~~ 148 (198)
|.....
T Consensus 203 D~~~~~ 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCcc
Confidence 998754
No 264
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.69 E-value=5.1e-16 Score=120.35 Aligned_cols=162 Identities=21% Similarity=0.196 Sum_probs=114.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecC---------------CCCceeE---EEEEEeCCceEEEeCCCCcccc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQT---INFFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~---------------~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~ 81 (198)
...+|+++-....|||||+..|+.+. -....+ +.+.|.- ..+.+.+..+.++||||+.+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQS-Gtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD-- 80 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQS-GTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD-- 80 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhc-cccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC--
Confidence 45689999999999999999999873 111111 2223321 23445578999999999743
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH---HHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV---ARRAMQIE 158 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~ 158 (198)
+--+..+-..-.|++++++||.+|+..+.+-+++.....+.+.|+|+||+|.+.+... ++....+-
T Consensus 81 -----------FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~ 149 (603)
T COG1217 81 -----------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFV 149 (603)
T ss_pred -----------ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 1112222223389999999999999999999999888889999999999999876532 22222222
Q ss_pred HHHHhccCCCCCcEEeccCCC----------CChHHHHHHHHHhhcc
Q 029158 159 ESLKANNSLVQPVMMVSSKSG----------AGIRSLRTVLSKIARF 195 (198)
Q Consensus 159 ~~~~~~~~~~~~v~~~Sa~~~----------~gi~~l~~~i~~~~~~ 195 (198)
+.-........|+++.|+..| .++.-||+.|.++++.
T Consensus 150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 150 ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 222222233689999999876 6788899999998764
No 265
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.68 E-value=2.9e-16 Score=114.30 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=76.5
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-----CcHHHHHHHHhhCCcEEEEEecc
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-----RDHELISLMERSQTKYQVVLTKT 142 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-----~~~~~~~~~~~~~~p~iiv~nK~ 142 (198)
.+.++||||..+........ .++-+-+... ..-+++|++|+...-.. +.++....+-+.+.|.|+|.||+
T Consensus 117 ~~~liDTPGQIE~FtWSAsG----sIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASG----SIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred CEEEEcCCCceEEEEecCCc----cchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecc
Confidence 68999999987754322211 1111111111 14578999998663222 22344466667789999999999
Q ss_pred CCCCcHHHHHHH---HHHHHHHHhcc------------------CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 143 DTVFPIDVARRA---MQIEESLKANN------------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 143 Dl~~~~~~~~~~---~~~~~~~~~~~------------------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
|+.+..-..++- +.+++.+.... -.....+-+||.+|+|+++++.++.+.+.
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 999876443332 33333333100 01477899999999999999998877543
No 266
>PTZ00258 GTP-binding protein; Provisional
Probab=99.68 E-value=1e-15 Score=119.24 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=67.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--------------------CCceEEEeCCCCc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG 78 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~iiDtpG~~ 78 (198)
....+|+++|.||+|||||+|+|.+.. ..+.++++||.+...... +.++.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 345689999999999999999998874 678899999976443221 2359999999986
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
...... ..+..+++.....+|++++|+|+..
T Consensus 97 ~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f~ 127 (390)
T PTZ00258 97 KGASEG------EGLGNAFLSHIRAVDGIYHVVRAFE 127 (390)
T ss_pred cCCcch------hHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 543222 2344566777777999999999853
No 267
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.2e-16 Score=103.10 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=109.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
...+++++|.-|+||||++-++--.+ .+...|..... .++.+.+.++.+||..|.+.. ..+++.|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvge---vvttkPtigfnve~v~yKNLk~~vwdLggqtSi----------rPyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGE---VVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSI----------RPYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCc---ccccCCCCCcCccccccccccceeeEccCcccc----------cHHHHHHh
Confidence 66789999999999999987775542 12222222222 224446778999999996543 56677777
Q ss_pred hcccccceEEEEEeCCCC--CCcCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
.. .|.+|||+|+++. ......+++..+++. ...+++++||+|........+....+.- .........+|.
T Consensus 84 ~d---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l--~~Lk~r~~~Iv~ 158 (182)
T KOG0072|consen 84 AD---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGL--QKLKDRIWQIVK 158 (182)
T ss_pred cc---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhCh--HHHhhheeEEEe
Confidence 77 7999999999872 233334555555433 4678899999999876655554444331 122233488999
Q ss_pred eccCCCCChHHHHHHHHHhhcc
Q 029158 174 VSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.||.+|+|++...+|+++-++.
T Consensus 159 tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eccccccCCcHHHHHHHHHHhc
Confidence 9999999999999999987764
No 268
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.68 E-value=8.2e-16 Score=110.09 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||+|...+.... +...+.+|..+ ..+......+.|+||+|..+ +..+.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~---f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~----------~~~~~ 68 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGR---FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE----------FSAMR 68 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccc---cccccCCCccccceEEEEECCEEEEEEEEcCCCccc----------ChHHH
Confidence 35689999999999999999999884 34445444433 22333356788999999422 24444
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
..++.. .++.++|++..+..+-.+ ..+++.+.+ ...|+++|+||+|+........ +.-++. .. ...+
T Consensus 69 ~~~~~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~--eeg~~l-a~--~~~~ 140 (196)
T KOG0395|consen 69 DLYIRN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSE--EEGKAL-AR--SWGC 140 (196)
T ss_pred HHhhcc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCH--HHHHHH-HH--hcCC
Confidence 555555 688888888876333222 223444422 2579999999999987432221 111111 11 2257
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+++++||+...+++++|..+....+.
T Consensus 141 ~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 141 AFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 89999999999999999999887654
No 269
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.67 E-value=1.5e-15 Score=129.98 Aligned_cols=115 Identities=17% Similarity=0.278 Sum_probs=86.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceee--------cC------CCCceeE---EEEEE----------------
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--------SD------KPGLTQT---INFFK---------------- 64 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~--------~~------~~~~t~~---~~~~~---------------- 64 (198)
+...++|+++|+.++|||||+++|+........ .+ ..+.|.. ..+..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 456789999999999999999999865211000 01 1112222 11111
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCC
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 144 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 144 (198)
.+..+.++||||+ .++..+.......+|++++|+|+.+|+...+..+++.+...++|+++++||+|+
T Consensus 96 ~~~~inliDtPGh-------------~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 96 NEYLINLIDSPGH-------------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred CceEEEEECCCCH-------------HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcc
Confidence 1456789999997 556666777777899999999999999999999999998889999999999999
Q ss_pred C
Q 029158 145 V 145 (198)
Q Consensus 145 ~ 145 (198)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 8
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.67 E-value=8.8e-16 Score=129.10 Aligned_cols=108 Identities=22% Similarity=0.260 Sum_probs=73.5
Q ss_pred EcCCCCCHHHHHHHHhcCccc-eeec---------C------CCCceeEE---EEEEeCCceEEEeCCCCccccchhHHH
Q 029158 27 AGRSNVGKSSMLNALTRQWGV-VRTS---------D------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK 87 (198)
Q Consensus 27 vG~~~~GKSsli~~l~~~~~~-~~~~---------~------~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~ 87 (198)
+|++++|||||+++|+..... ...+ + ..+.|... .+...+..+.+|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 599999999999999654210 0000 0 12233322 2334477899999999732
Q ss_pred HHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 88 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 88 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
+..+.......+|++++++|++.+........+..+...+.|+++|+||+|+...
T Consensus 73 -----~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 -----FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred -----HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 1222233334499999999999877766667777777778999999999998753
No 271
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.3e-15 Score=122.19 Aligned_cols=161 Identities=23% Similarity=0.359 Sum_probs=115.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe-------------------CCceEEEeCCCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-------------------GTKLCLVDLPGY 77 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~-------------------~~~~~iiDtpG~ 77 (198)
-+.|.++++|...+|||-|+..+.+.. ...+...++|+.+. ++.. -+.+.+|||||+
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 357889999999999999999998863 33455566666542 3331 146899999996
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc----------
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP---------- 147 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---------- 147 (198)
+.+..---++...||++|+|+|..+|+.....+-+..++..++|+|+.+||+|..-.
T Consensus 551 -------------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 551 -------------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred -------------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHH
Confidence 333333334445699999999999999999999999999999999999999997532
Q ss_pred -----------HHHHHHHHHHHHHHHhcc------------CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 148 -----------IDVARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 148 -----------~~~~~~~~~~~~~~~~~~------------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+....++.+.-.++... +..+.++|+||.+|+|+.+|+-+|.++.+
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 011122222222222111 11356899999999999999999988654
No 272
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.66 E-value=9.8e-15 Score=109.97 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+||||++|+|++. .+...+...+++... .....+..+.+|||||+.+.. ...+.....+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHH
Confidence 45779999999999999999999998 444444544433222 122246789999999987642 12222233344
Q ss_pred HHHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 147 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~ 147 (198)
.++.. ...|+++||.+... .+...+..+++.+... ..++|+|+|++|...+
T Consensus 112 ~~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 44332 35899999955432 3455666677666543 3689999999998744
No 273
>PTZ00416 elongation factor 2; Provisional
Probab=99.66 E-value=3.6e-15 Score=127.42 Aligned_cols=132 Identities=14% Similarity=0.271 Sum_probs=92.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccce--------e------ecCCCCceeEE---EEEEe----------CCceE
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVV--------R------TSDKPGLTQTI---NFFKL----------GTKLC 70 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~--------~------~~~~~~~t~~~---~~~~~----------~~~~~ 70 (198)
....++|+++|+.++|||||+++|+...... . .....++|... .+... +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 3456799999999999999999998642110 0 00011222221 11111 34689
Q ss_pred EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC----
Q 029158 71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF---- 146 (198)
Q Consensus 71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---- 146 (198)
++||||+ .++..+.......+|++++|+|+..++...+..++..+...++|+++++||+|+.-
T Consensus 96 liDtPG~-------------~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~ 162 (836)
T PTZ00416 96 LIDSPGH-------------VDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQ 162 (836)
T ss_pred EEcCCCH-------------HhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcC
Confidence 9999997 34455566666779999999999999999999999999888899999999999972
Q ss_pred --c----HHHHHHHHHHHHHHH
Q 029158 147 --P----IDVARRAMQIEESLK 162 (198)
Q Consensus 147 --~----~~~~~~~~~~~~~~~ 162 (198)
+ .+.....+.+++.+.
T Consensus 163 ~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 163 LDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 1 234455666665554
No 274
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=4.9e-16 Score=120.71 Aligned_cols=162 Identities=19% Similarity=0.213 Sum_probs=113.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCc-------------cceeecCCCCceeEEE-----EEE---eCCceEEEeCC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQW-------------GVVRTSDKPGLTQTIN-----FFK---LGTKLCLVDLP 75 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~-------------~~~~~~~~~~~t~~~~-----~~~---~~~~~~iiDtp 75 (198)
+..+.++..++-.-..|||||..+|+... ..-....+.+.|...+ +.. ..+.+.++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 44567788899999999999999998532 1112233455664432 222 13678999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHH
Q 029158 76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 155 (198)
Q Consensus 76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 155 (198)
|+-+= ...+...+ ..|.++++|+||++|...+...-.-...+.+.-+|.|+||+||+.++ .+....
T Consensus 85 GHVDF----------sYEVSRSL---AACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad-pervk~ 150 (603)
T COG0481 85 GHVDF----------SYEVSRSL---AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD-PERVKQ 150 (603)
T ss_pred Cccce----------EEEehhhH---hhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC-HHHHHH
Confidence 97431 11111222 23899999999999988888765555555689999999999999764 345555
Q ss_pred HHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 156 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++++.+. ......+.+|||+|.|++++++.|.+.++.
T Consensus 151 eIe~~iG---id~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 151 EIEDIIG---IDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHhC---CCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 5555442 223568999999999999999999988764
No 275
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.65 E-value=7.8e-16 Score=110.81 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=116.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
.+++-.+|+++|.|++|||||+..+.... .+...+..||... ...+.+.+++++|.||+.+...+.. ..
T Consensus 58 ~KsGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgk------GR 129 (364)
T KOG1486|consen 58 LKSGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGK------GR 129 (364)
T ss_pred eccCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCC------CC
Confidence 35567799999999999999999999874 5667777777553 3555688999999999877654432 22
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc------------------------------------------H---------
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD------------------------------------------H--------- 122 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~------------------------------------------~--------- 122 (198)
-++.+...+.+|+|++++|++.+..... .
T Consensus 130 GRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILhe 209 (364)
T KOG1486|consen 130 GRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHE 209 (364)
T ss_pred CceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHH
Confidence 4466677778999999999976211110 0
Q ss_pred -----------------HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChH
Q 029158 123 -----------------ELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 183 (198)
Q Consensus 123 -----------------~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~ 183 (198)
++++.+... -++++.|-||+|.++-++.+. +.+ ...-+-+||.-..|++
T Consensus 210 ykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdr----lAr--------~PnsvViSC~m~lnld 277 (364)
T KOG1486|consen 210 YKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDR----LAR--------QPNSVVISCNMKLNLD 277 (364)
T ss_pred HeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHH----Hhc--------CCCcEEEEeccccCHH
Confidence 122222211 137899999999988665532 211 2456778999999999
Q ss_pred HHHHHHHHhhccccC
Q 029158 184 SLRTVLSKIARFAKV 198 (198)
Q Consensus 184 ~l~~~i~~~~~~~r~ 198 (198)
.+.+.|.+.+...||
T Consensus 278 ~lle~iWe~l~L~rv 292 (364)
T KOG1486|consen 278 RLLERIWEELNLVRV 292 (364)
T ss_pred HHHHHHHHHhceEEE
Confidence 999999999988775
No 276
>PLN00023 GTP-binding protein; Provisional
Probab=99.65 E-value=4.7e-15 Score=112.38 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=76.9
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE-------------eCCceEEEeCCCCc
Q 029158 15 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK-------------LGTKLCLVDLPGYG 78 (198)
Q Consensus 15 ~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~-------------~~~~~~iiDtpG~~ 78 (198)
..++....+|+++|..|+|||||++++.+........+..+.+.. +.+.. ....+.||||+|.
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq- 93 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH- 93 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC-
Confidence 356777889999999999999999999987422211222222211 11110 1235899999995
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---------------CCcEEEEEecc
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---------------QTKYQVVLTKT 142 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---------------~~p~iiv~nK~ 142 (198)
+.+..+...|+.. +|++++|+|.++...... ..|++.+... ++|+++|+||+
T Consensus 94 ---------ErfrsL~~~yyr~---AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 94 ---------ERYKDCRSLFYSQ---INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred ---------hhhhhhhHHhccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 2234444555554 899999999986322222 2355555432 37899999999
Q ss_pred CCCCc
Q 029158 143 DTVFP 147 (198)
Q Consensus 143 Dl~~~ 147 (198)
|+...
T Consensus 162 DL~~~ 166 (334)
T PLN00023 162 DIAPK 166 (334)
T ss_pred ccccc
Confidence 99754
No 277
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.64 E-value=4.5e-15 Score=99.84 Aligned_cols=149 Identities=21% Similarity=0.233 Sum_probs=98.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--------eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
.++.++|.+-+|||+|+..+... +.+... -+|..+.++. ....+++|||+| ++.+..+
T Consensus 9 frlivigdstvgkssll~~ft~g-kfaels---dptvgvdffarlie~~pg~riklqlwdtag----------qerfrsi 74 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEG-KFAELS---DPTVGVDFFARLIELRPGYRIKLQLWDTAG----------QERFRSI 74 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcC-cccccC---CCccchHHHHHHHhcCCCcEEEEEEeeccc----------hHHHHHH
Confidence 57899999999999999999988 344333 2333333221 135789999999 4667778
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHhh-----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
...|+++ .-++++|+|.+..-+-. -..|++....+ ++-..+|++|+|+.....+.. ++.+..... .
T Consensus 75 tksyyrn---svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~--EEaEklAa~---h 146 (213)
T KOG0091|consen 75 TKSYYRN---SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTA--EEAEKLAAS---H 146 (213)
T ss_pred HHHHhhc---ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccH--HHHHHHHHh---c
Confidence 8888887 66899999997622211 12233333322 233467999999986543321 222222221 2
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHh
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
+..++++||++|.|+++.++-+.+.
T Consensus 147 gM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 147 GMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred CceEEEecccCCCcHHHHHHHHHHH
Confidence 5789999999999999999877654
No 278
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.64 E-value=1.4e-14 Score=109.70 Aligned_cols=173 Identities=23% Similarity=0.315 Sum_probs=114.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeec---CCCC----ceeEEEEEE-------eCCceEEEeCCCCccccchh
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPG----LTQTINFFK-------LGTKLCLVDLPGYGFAYAKE 84 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~---~~~~----~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~ 84 (198)
....+|+++|++|.|||||+|.|++.. +.... +..+ .+..+.... ...+++++||||+|+.....
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 345789999999999999999999872 22111 1111 222222111 13578999999999864322
Q ss_pred ----HHHHHHHHHHHHHHhcc-----------cccceEEEEEe-CCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH
Q 029158 85 ----EVKDAWEELVKEYVSTR-----------VSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 148 (198)
Q Consensus 85 ----~~~~~~~~~~~~~~~~~-----------~~~d~vi~v~d-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 148 (198)
.+-..++...++|+... ...++++|.+. .++++...+.+.++.+.. .+.+|.|+.|+|..+..
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDD 178 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHH
Confidence 23344444444555321 12567888875 466889999999998886 69999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcE-EeccCCC-CChHHHHHHHHHhhccc
Q 029158 149 DVARRAMQIEESLKANNSLVQPVM-MVSSKSG-AGIRSLRTVLSKIARFA 196 (198)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~-~~Sa~~~-~gi~~l~~~i~~~~~~~ 196 (198)
++...++.+.+.+.... +++| |.+.-.. ...-+.-+.+....+|+
T Consensus 179 El~~~K~~I~~~i~~~n---I~vf~pyd~e~~~~e~~e~~~~l~~~~PFA 225 (373)
T COG5019 179 ELAEFKERIREDLEQYN---IPVFDPYDPEDDEDESLEENQDLRSLIPFA 225 (373)
T ss_pred HHHHHHHHHHHHHHHhC---CceeCCCCccccchhhHHHHHHHhhcCCeE
Confidence 99999999999888663 6666 4333222 13334444555555554
No 279
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.64 E-value=6.7e-16 Score=101.35 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=107.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+..+++++|-.++|||||+..|.+.+ .....+..+.......+.....+.+||..|. ..++..|. .|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn~k~v~~~g~f~LnvwDiGGq------r~IRpyWs----NY 82 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQ------RGIRPYWS----NY 82 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcceEEEeecCcEEEEEEecCCc------cccchhhh----hh
Confidence 3567899999999999999999999873 4444444333333333344578999999994 23344444 44
Q ss_pred HhcccccceEEEEEeCCCC--CCcCcHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+.. .|.++||+|+.+. +.+...++.+.+++ ..+|+.+-.||.|+......++....+. +........++-
T Consensus 83 yen---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~kln--l~~lrdRswhIq 157 (185)
T KOG0074|consen 83 YEN---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLN--LAGLRDRSWHIQ 157 (185)
T ss_pred hhc---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcc--hhhhhhceEEee
Confidence 444 8999999997652 12222333344433 3689999999999987655544332222 222233357889
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+||.+++|+.+-.+|++....
T Consensus 158 ~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 158 ECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred eCccccccCccCcchhhhcCCC
Confidence 9999999999999999887654
No 280
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.64 E-value=5.2e-15 Score=125.14 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccee--------ecC------CCCceeEE-----EE--EEeCCceEEEeCCCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR--------TSD------KPGLTQTI-----NF--FKLGTKLCLVDLPGY 77 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~--------~~~------~~~~t~~~-----~~--~~~~~~~~iiDtpG~ 77 (198)
...++|+++|+.++|||||+.+|+....... ..+ ..+.|... .+ ...+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4677899999999999999999986421100 000 11122221 11 112567899999997
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
.+ +..+.......+|++++|+|+..++...+..++..+...+.|.|+++||+|+.
T Consensus 98 ~d-------------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VD-------------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cC-------------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 33 22344444455999999999999988888888888777788999999999986
No 281
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.63 E-value=9.7e-16 Score=102.48 Aligned_cols=155 Identities=18% Similarity=0.125 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC---CCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
.-..+++++|..=+|||||+-+++..++-...-. ....++...+.....++.||||+|. +.+..+-.
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ----------ErfHALGP 80 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ----------ERFHALGP 80 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccch----------HhhhccCc
Confidence 4467899999999999999999987641111110 1112333445556678999999994 55566666
Q ss_pred HHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
-|++. .+++++|+|..+.-+-. -+.|...++. ..+-+++|.||+|+.....+.. ++..+....-+..+
T Consensus 81 IYYRg---SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~-----qeAe~YAesvGA~y 152 (218)
T KOG0088|consen 81 IYYRG---SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTR-----QEAEAYAESVGALY 152 (218)
T ss_pred eEEeC---CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhH-----HHHHHHHHhhchhh
Confidence 67766 78999999997621111 1223333332 2477899999999975443221 11111111225779
Q ss_pred EEeccCCCCChHHHHHHHHH
Q 029158 172 MMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~ 191 (198)
+++||+.+.|+.++|+.+..
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTA 172 (218)
T ss_pred eecccccccCHHHHHHHHHH
Confidence 99999999999999987654
No 282
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.61 E-value=3.6e-15 Score=104.78 Aligned_cols=67 Identities=24% Similarity=0.460 Sum_probs=46.8
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHH-HHHhhCCcEEEEEecc
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVLTKT 142 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~ 142 (198)
.++.|+||||+.+....+ ..+..+|+ ..+|+++||+++.+.+...+.+.+. ........+++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~------~~~~~~~~---~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEH------TEITEEYL---PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTT------SHHHHHHH---STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhh------HHHHHHhh---ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 379999999997643222 24455555 3489999999999877766666554 4444566799999985
No 283
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.1e-15 Score=101.00 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=95.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE-------e---------CCceEEEeCCCCccccchhH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------L---------GTKLCLVDLPGYGFAYAKEE 85 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------~---------~~~~~iiDtpG~~~~~~~~~ 85 (198)
.+.+.+|.+|+||||++-.+.... .+...-+|..+.+.. . ...+++|||+|
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~----F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--------- 76 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGK----FNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--------- 76 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCc----ccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc---------
Confidence 356778999999999998887663 111112232222111 1 24689999999
Q ss_pred HHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHH-HHHHHH
Q 029158 86 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS----QTKYQVVLTKTDTVFPIDVARR-AMQIEE 159 (198)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~ 159 (198)
++.+..+.-.|++. +=+.++++|..+.-+ -+...|+.+++.+ +--++++.||+|+.+...+.+. ...+.+
T Consensus 77 -QERFRSLTTAFfRD---AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ 152 (219)
T KOG0081|consen 77 -QERFRSLTTAFFRD---AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALAD 152 (219)
T ss_pred -HHHHHHHHHHHHHh---hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHH
Confidence 35556666666666 567788899875211 1224566666643 3447899999999876544321 112222
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
..+.|+|++||.+|.|+++..+.+...
T Consensus 153 ------kyglPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 153 ------KYGLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred ------HhCCCeeeeccccCcCHHHHHHHHHHH
Confidence 226999999999999999988776543
No 284
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.6e-14 Score=112.79 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=110.6
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCc---------------------cc--------eeecCCCCceeEEE---EEE
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQW---------------------GV--------VRTSDKPGLTQTIN---FFK 64 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~---------------------~~--------~~~~~~~~~t~~~~---~~~ 64 (198)
++......+++|...+|||||+.+|+..- .. +......+.|.++. +..
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34456789999999999999999988421 00 11122334444432 333
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------cCcHHHHHHHHhhC-CcEE
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQ-TKYQ 136 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~-~p~i 136 (198)
....++++|+||+ .+++..++.+...+|+.++|+|++.+.. ....++...++..+ ..+|
T Consensus 253 ~~~~~tliDaPGh-------------kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 253 KSKIVTLIDAPGH-------------KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred CceeEEEecCCCc-------------cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 3578999999997 6778889999999999999999987422 33466777777766 4578
Q ss_pred EEEeccCCCCcH--HHHHHHHHHHHHH-Hhcc--CCCCCcEEeccCCCCChHHH
Q 029158 137 VVLTKTDTVFPI--DVARRAMQIEESL-KANN--SLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 137 iv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~--~~~~~v~~~Sa~~~~gi~~l 185 (198)
+++||+|+++.. ..+++...+...+ .... ...+.++|+|+..|+|+-..
T Consensus 320 vaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 320 VAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred EEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 999999999764 4456666666666 2222 23468999999999998654
No 285
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.60 E-value=2.7e-15 Score=99.40 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=61.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccc--eeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~--~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
||+++|.+|+|||||+++|++.... .......+.+........ ...+.+||++|.... ......+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~ 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF----------YSQHQFF 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH----------HCTSHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee----------cccccch
Confidence 6899999999999999999987422 011222222222221111 234899999996321 1111111
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHH---HHHHHh--hCCcEEEEEeccC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HEL---ISLMER--SQTKYQVVLTKTD 143 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~---~~~~~~--~~~p~iiv~nK~D 143 (198)
...+|++++|+|.++..+-.. .++ +..+.. .+.|+++|+||.|
T Consensus 71 ---~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 ---LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ---HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ---hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 223899999999986321111 122 233332 2599999999998
No 286
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.60 E-value=5.9e-14 Score=100.52 Aligned_cols=171 Identities=20% Similarity=0.291 Sum_probs=108.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeec-------CCCCceeEE------EEEEeCCceEEEeCCCCccccchhH--
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTI------NFFKLGTKLCLVDLPGYGFAYAKEE-- 85 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~t~~~------~~~~~~~~~~iiDtpG~~~~~~~~~-- 85 (198)
..+|++||.+|.|||||+|.|+... +...+ +++.|+.-. .......+++++||||+|+.+..+.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 4689999999999999999998752 22111 122222211 1111245789999999999765443
Q ss_pred ------HHHHHHHHHHHHHhcc-------cccceEEEEEeC-CCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHH
Q 029158 86 ------VKDAWEELVKEYVSTR-------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 151 (198)
Q Consensus 86 ------~~~~~~~~~~~~~~~~-------~~~d~vi~v~d~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 151 (198)
+.+.++.++++-+... ...+.++|.+.+ .+.+...|.++++.+.+ -+.++-|+-|+|..+-++..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlTleEr~ 203 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLTLEERS 203 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccccHHHHH
Confidence 2333333333222110 114556776655 55788899999998876 47899999999999999988
Q ss_pred HHHHHHHHHHHhccCCCCCcEEeccCCCC-ChHHHHHHHHHhhccc
Q 029158 152 RRAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIARFA 196 (198)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~-gi~~l~~~i~~~~~~~ 196 (198)
+..+.+++.+.... ..+.+-.+.+.. .=..+-+.+.+..+++
T Consensus 204 ~FkqrI~~el~~~~---i~vYPq~~fded~ed~~lN~kvR~~iPFA 246 (336)
T KOG1547|consen 204 AFKQRIRKELEKHG---IDVYPQDSFDEDLEDKTLNDKVRESIPFA 246 (336)
T ss_pred HHHHHHHHHHHhcC---cccccccccccchhHHHHHHHHHhhCCeE
Confidence 99999998888653 455554444321 1123444555555554
No 287
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.60 E-value=1e-14 Score=105.86 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=42.5
Q ss_pred hCCcEEEEEeccCCCCcH--HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 131 SQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.+.|.++++||+|+.... ...+..+.+++. ....+++++||++++|++++++++.++.
T Consensus 147 ~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~-----~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 147 FKEADLIVINKADLAEAVGFDVEKMKADAKKI-----NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HhhCCEEEEEHHHccccchhhHHHHHHHHHHh-----CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 357889999999998642 233333333322 2358899999999999999999998764
No 288
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.60 E-value=1.6e-14 Score=105.43 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=88.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
||+++|+.||||||..+.++++. .+....+.+.|.+++.... ...+.+||+||...-.... +.......+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-----~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-----FNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-----HTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-----ccccHHHHH
Confidence 68999999999999999999873 3333444455655553333 4589999999975422110 000111223
Q ss_pred hcccccceEEEEEeCCCCCCcCcHH----HHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHH----HHHHhccCCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHE----LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIE----ESLKANNSLV 168 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~ 168 (198)
+. +++++||+|+.+.....+.. .+..+.+. +..+-+.++|+|+..++...+....++ +.+.......
T Consensus 75 ~~---v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~ 151 (232)
T PF04670_consen 75 SN---VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED 151 (232)
T ss_dssp CT---ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred hc---cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 33 88999999998532333322 22333332 578999999999998776655544444 3443332223
Q ss_pred CCcEEeccCCCCChHHHHHHHHH
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
..++.+|..+ +.+-+.+..|..
T Consensus 152 ~~~~~TSI~D-~Sly~A~S~Ivq 173 (232)
T PF04670_consen 152 ITFFLTSIWD-ESLYEAWSKIVQ 173 (232)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHH
T ss_pred eEEEeccCcC-cHHHHHHHHHHH
Confidence 6678888777 555555555544
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.60 E-value=4.5e-14 Score=109.00 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=66.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE--EEe-C-----------------CceEEEeCCCCcccc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G-----------------TKLCLVDLPGYGFAY 81 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~-----------------~~~~iiDtpG~~~~~ 81 (198)
.+|+++|.||+|||||+|+|++.. ..+.++++||.+... ... + .++.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 689999999999999999999984 678999999976432 111 1 259999999986543
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
... ..+..+++.....+|++++|+|+..
T Consensus 81 ~~g------~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 81 SKG------EGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred ChH------HHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 222 3345677777778999999999864
No 290
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.60 E-value=1.1e-15 Score=99.50 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=100.6
Q ss_pred EEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE-------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 26 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 26 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~-------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
++|.+++|||.|+-++-.. +...+..-.|..+.+. .....+++|||.|. +.+......|+
T Consensus 2 llgds~~gktcllir~kdg---afl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------erfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDG---AFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------ERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccC---ceecCceeeeeeeccccceeccCCcEEEEEEeeccch----------HHHhhhhHhhh
Confidence 6899999999998887655 3333333334443322 23467999999993 55566666677
Q ss_pred hcccccceEEEEEeCCCCCCcC-cHHHHHHHHhh---CCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+. +|+++++.|.....+-. -..|+.++.+. .+.+.++.||||+.....+. +.-+.+.+.. ++|+.+
T Consensus 69 rd---a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y------~ipfme 139 (192)
T KOG0083|consen 69 RD---ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY------GIPFME 139 (192)
T ss_pred cc---cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHH------CCCcee
Confidence 66 89999999987633322 24566666554 47789999999997643211 1123333333 489999
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+|||+|.|++-.+-.|.+.+.
T Consensus 140 tsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 140 TSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccccccccHhHHHHHHHHHHH
Confidence 999999999999988877654
No 291
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.9e-14 Score=94.64 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=98.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC---ceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+..++|..|+|||.|+..+...+..+......+ -|+-+.+......+++|||.| ++.+....+.|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtag----------qerfravtrsy 80 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG----------QERFRAVTRSY 80 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeeccc----------HHHHHHHHHHH
Confidence 45788999999999999999988743332222211 233345555567899999999 46778888888
Q ss_pred HhcccccceEEEEEeCCCCCCcCcH-HHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+++ +.+.++|.|.........+ .|+-..+. .+.-++++.||.|+....++. .++.++... ..+..+++
T Consensus 81 yrg---aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~--yeeak~fae---engl~fle 152 (215)
T KOG0097|consen 81 YRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVT--YEEAKEFAE---ENGLMFLE 152 (215)
T ss_pred hcc---ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCc--HHHHHHHHh---hcCeEEEE
Confidence 887 6778899998753222221 12222222 245678899999997655331 122222222 22578999
Q ss_pred eccCCCCChHHHHH
Q 029158 174 VSSKSGAGIRSLRT 187 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~ 187 (198)
+|||+|+++++.|-
T Consensus 153 ~saktg~nvedafl 166 (215)
T KOG0097|consen 153 ASAKTGQNVEDAFL 166 (215)
T ss_pred ecccccCcHHHHHH
Confidence 99999999988664
No 292
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=7.5e-14 Score=106.56 Aligned_cols=152 Identities=20% Similarity=0.316 Sum_probs=104.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccee------ecCCCCceeEEEEEE-------eCCceEEEeCCCCccccchhH--
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVR------TSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEE-- 85 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~------~~~~~~~t~~~~~~~-------~~~~~~iiDtpG~~~~~~~~~-- 85 (198)
...++++|++|.|||||+|.|+... +.. ....+..|..+.... ...+++++||||+|+......
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~-l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTD-LSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhh-ccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 4689999999999999999999873 111 111111222222111 125789999999998653332
Q ss_pred --HHHHHHHHHHHHHhccc----------ccceEEEEEeC-CCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHH
Q 029158 86 --VKDAWEELVKEYVSTRV----------SLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 152 (198)
Q Consensus 86 --~~~~~~~~~~~~~~~~~----------~~d~vi~v~d~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 152 (198)
+...++...++|+.... ..++++|.+.+ .+++...|.+.++.+.. .+++|.|+.|+|..++.++..
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~ 178 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELNQ 178 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHHH
Confidence 33444444555554321 36678888765 55789999999988876 799999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCcEEeccC
Q 029158 153 RAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
....+.+.+.... ++++.....
T Consensus 179 ~K~~I~~~i~~~n---I~vf~fp~~ 200 (366)
T KOG2655|consen 179 FKKRIRQDIEEHN---IKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHcC---cceecCCCC
Confidence 9999998887653 555544433
No 293
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.9e-14 Score=110.98 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc--Cc------------cceeecC------CCC---ceeEEEEEEeCCceEEEeCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTR--QW------------GVVRTSD------KPG---LTQTINFFKLGTKLCLVDLP 75 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~--~~------------~~~~~~~------~~~---~t~~~~~~~~~~~~~iiDtp 75 (198)
.++...+++..|.+|||||-..|+- .- .....++ ..+ ++.-.++.+.+..+.++|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3567899999999999999998772 10 0000111 111 33335677778899999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
|+.+ +-...|+.+..+|.+++|+|+..|+....+++++..+..++|++-.+||+|....
T Consensus 90 GHeD-------------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHED-------------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred Cccc-------------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 9832 2333333344489999999999999999999999988889999999999997643
No 294
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.58 E-value=1e-14 Score=115.86 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC-CCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.-.||+++|..|+||||||.+|+..+++..+.+. +.++.+..+........++||+.-.+. +.. ..
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~------~~~-------l~ 74 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDD------RLC-------LR 74 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccch------hHH-------HH
Confidence 3468999999999999999999998654444443 345666667777778999999863221 111 11
Q ss_pred hcccccceEEEEEeCCC--CCCcCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCCC
Q 029158 99 STRVSLKRVCLLIDTKW--GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~--~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~ 169 (198)
...+.+|+++++....+ .+......|+-.++. .++|+|+|.||+|....... +.....+..++.. ..
T Consensus 75 ~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E----iE 150 (625)
T KOG1707|consen 75 KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE----IE 150 (625)
T ss_pred HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH----HH
Confidence 22233899999987654 222333456665553 36999999999999876543 2223333333332 35
Q ss_pred CcEEeccCCCCChHHHHHHHHHh
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++|.|||++..++.+++-..++.
T Consensus 151 tciecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 151 TCIECSALTLANVSELFYYAQKA 173 (625)
T ss_pred HHHhhhhhhhhhhHhhhhhhhhe
Confidence 78999999999999998876654
No 295
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.58 E-value=8.2e-14 Score=92.81 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=107.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe------CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..-+|+++|..++|||+++..|+... ........+|..++-.... .-.+.+.||.|+.+.. .++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~-~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---------~eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGN-HVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---------QEL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhcc-CCCCCccccchhhheeEeeecCCChhheEEEeecccccCch---------hhh
Confidence 34589999999999999999998773 2333334445455432222 3579999999985531 344
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcHHHH-HHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
-+.|++. +|+.++|.++.+.-+-...+.+ +.+.+ ..+|+++++||+|+..+.+......+.+...+ .
T Consensus 78 prhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rE-----k 149 (198)
T KOG3883|consen 78 PRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKRE-----K 149 (198)
T ss_pred hHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhh-----h
Confidence 5566665 8999999998763222222332 22322 25899999999999887766655555554433 3
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhh
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+..+++++++...+-+.|.++...+
T Consensus 150 vkl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 150 VKLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred eeEEEEEeccchhhhhHHHHHHHhc
Confidence 7899999999999999998877643
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.57 E-value=2.7e-13 Score=103.62 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=66.3
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
+.++.|+||+|.+... .... ..+|.++++.+... ..+.+.+..- -.++|.++|+||+|+.
T Consensus 126 g~D~viidT~G~~~~e---------~~i~-------~~aD~i~vv~~~~~---~~el~~~~~~-l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---------VDIA-------NMADTFVVVTIPGT---GDDLQGIKAG-LMEIADIYVVNKADGE 185 (300)
T ss_pred CCCEEEEeCCCCchhh---------hHHH-------HhhceEEEEecCCc---cHHHHHHHHH-HhhhccEEEEEccccc
Confidence 4689999999975321 1111 12778887765432 2232322211 1368889999999998
Q ss_pred CcHHHHHHHHHHHHHHHh----ccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 146 FPIDVARRAMQIEESLKA----NNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
...+.......+...+.. ......+++++||++++|+++++++|.++..
T Consensus 186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 765432222222111111 1112347999999999999999999988654
No 297
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.56 E-value=1.5e-14 Score=108.25 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=87.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcC----ccceeecCCCCceeEEE-EEEeCCceEEEeCCCCccccchhHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
...+...|.++|++|||||||++.+++. .......+...+..+.. +...+.++.-+.|.+... .........+.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Ch-l~a~mv~~Al~ 178 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCH-LDAQMIADAAP 178 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCc-CcHHHHHHHHH
Confidence 3455678999999999999999887754 12334444433332321 111234445555543221 11112222222
Q ss_pred HHHHHHHhcccccce---------------------EEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc--H
Q 029158 92 ELVKEYVSTRVSLKR---------------------VCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--I 148 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~---------------------vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~ 148 (198)
.+... ..|. -+.+++..++.. +.+++-.....+-++|+||+|+.+. .
T Consensus 179 ~L~~~------~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~d----kplKyp~~f~~ADIVVLNKiDLl~~~~~ 248 (290)
T PRK10463 179 RLPLD------DNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGED----KPLKYPHMFAAASLMLLNKVDLLPYLNF 248 (290)
T ss_pred HHhhc------CCcEEEEECCCCccCCCccchhhceeEEEEECccccc----cchhccchhhcCcEEEEEhHHcCcccHH
Confidence 22110 0111 122333332210 1111112224667999999999863 2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 149 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++...+.+++. .+..+++++||++|+|+++|.+||.+..
T Consensus 249 dle~~~~~lr~l-----np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 249 DVEKCIACAREV-----NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred HHHHHHHHHHhh-----CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 444444444433 2368899999999999999999998854
No 298
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.55 E-value=6.4e-14 Score=102.26 Aligned_cols=151 Identities=19% Similarity=0.279 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC--ceeE-----------------EEEEE-----------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG--LTQT-----------------INFFK----------- 64 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~--~t~~-----------------~~~~~----------- 64 (198)
+..+|.+.|+||+|||||+++|.... +++...-.|. .|-. .-+..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45689999999999999999987431 2222211111 0100 00111
Q ss_pred ------------eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHh
Q 029158 65 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER 130 (198)
Q Consensus 65 ------------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~ 130 (198)
.++++.|++|.|.|... -+.. ..+|.+++|+-+..|-.-+.. -+++.
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---------~~I~-------~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---------VDIA-------DMADTVVLVLVPGLGDEIQAIKAGIMEI--- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---------HHHH-------TTSSEEEEEEESSTCCCCCTB-TTHHHH---
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---------HHHH-------HhcCeEEEEecCCCccHHHHHhhhhhhh---
Confidence 13589999999987531 1111 238999999877665433332 23333
Q ss_pred hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 131 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.-|+|+||+|+... +....+++..+.... ....|++.+||.+++|+++|++.|.++..+
T Consensus 169 ---aDi~vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 169 ---ADIFVVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp ----SEEEEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---ccEEEEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33999999995433 333444554444332 223689999999999999999999987654
No 299
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.55 E-value=3.7e-13 Score=99.30 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=59.6
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcCcHHHH-------HHHHhhCCcEEEE
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELI-------SLMERSQTKYQVV 138 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~-------~~~~~~~~p~iiv 138 (198)
.+.++||||..+-. .+........+... ..-++++++|+... .....++ ....+.+.|.|.|
T Consensus 92 ~y~l~DtPGQiElf-------~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~--~~~~~f~s~~L~s~s~~~~~~lP~vnv 162 (238)
T PF03029_consen 92 DYLLFDTPGQIELF-------THSDSGRKIVERLQKNGRLVVVFLVDSSFC--SDPSKFVSSLLLSLSIMLRLELPHVNV 162 (238)
T ss_dssp SEEEEE--SSHHHH-------HHSHHHHHHHHTSSS----EEEEEE-GGG---SSHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cEEEEeCCCCEEEE-------EechhHHHHHHHHhhhcceEEEEEEecccc--cChhhHHHHHHHHHHHHhhCCCCEEEe
Confidence 79999999974421 11222222333322 24468899999752 2222222 2223458999999
Q ss_pred EeccCCCCcHHHHHHH-----------------HHHHHHHH-hccCC--CCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 139 LTKTDTVFPIDVARRA-----------------MQIEESLK-ANNSL--VQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 139 ~nK~Dl~~~~~~~~~~-----------------~~~~~~~~-~~~~~--~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||+|+.... .+... ..+.+.+. ..... ..+++++|+++++|+++|+..|.+..+
T Consensus 163 lsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 163 LSKIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp E--GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred eeccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 9999999833 11111 11111111 11111 237999999999999999999998765
No 300
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.54 E-value=8.3e-13 Score=107.63 Aligned_cols=126 Identities=20% Similarity=0.206 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC-CCceeEEEEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+||||++|+|++.. ....... +.||...... ..+..+.+|||||+.+..........+...+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGek-vf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEV-KFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccc-cccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 45689999999999999999999983 3444444 4455433332 236789999999998753322222222222333
Q ss_pred HHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh-----CCcEEEEEeccCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS-----QTKYQVVLTKTDTVFP 147 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~ 147 (198)
++.. ..+|+++||+....... ..+..+++.+... -..+|+|+|+.|...+
T Consensus 196 ~Lsk-~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKK-NPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhc-CCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 3332 24788998886543212 2344556666432 3678999999999864
No 301
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.6e-13 Score=99.22 Aligned_cols=150 Identities=20% Similarity=0.241 Sum_probs=110.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc--------------cceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA 82 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~ 82 (198)
...+|..+|..+.|||||..++.... ..+......+.|... .+...+..+..+|+||+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH----- 85 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH----- 85 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh-----
Confidence 45689999999999999999887431 001112223445442 23334678999999998
Q ss_pred hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHHHH-HHHHHHHHH
Q 029158 83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEES 160 (198)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~-~~~~~~~~~ 160 (198)
.+++.+++....+.|+.|+|+.+.+++..+.++.+-..+..++| +++.+||+|+++..++. ....++.+.
T Consensus 86 --------aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 86 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred --------HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999988878877886 66789999999866554 445666666
Q ss_pred HHhccCC--CCCcEEeccCC-CCCh
Q 029158 161 LKANNSL--VQPVMMVSSKS-GAGI 182 (198)
Q Consensus 161 ~~~~~~~--~~~v~~~Sa~~-~~gi 182 (198)
+.....+ ..|++.-||.. .+|-
T Consensus 158 Ls~y~f~gd~~Pii~gSal~ale~~ 182 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSALKALEGD 182 (394)
T ss_pred HHHcCCCCCCcceeechhhhhhcCC
Confidence 6655433 57888888743 3443
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.53 E-value=1.4e-13 Score=106.55 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc---ce-----------eecCCCC---ceeEEEE--------EEe---CCceE
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG---VV-----------RTSDKPG---LTQTINF--------FKL---GTKLC 70 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~---~~-----------~~~~~~~---~t~~~~~--------~~~---~~~~~ 70 (198)
.+..-|.++|+.++|||||+|+|.++-. +. -..+.+| +|.+..+ ... ..+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 3567799999999999999999998721 11 2334455 4443222 111 37899
Q ss_pred EEeCCCCccccchhHHH-HH------------------HHHHHHHHHhcccccceEEEEE-eCC------CCCCcCcHHH
Q 029158 71 LVDLPGYGFAYAKEEVK-DA------------------WEELVKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHEL 124 (198)
Q Consensus 71 iiDtpG~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~d~vi~v~-d~~------~~~~~~~~~~ 124 (198)
++||+|+...-.....+ +. -+--.+..+.. .+|..++|. |.+ .+....+.++
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d--hstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE--HSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHh--cCcEEEEEEcCCCccccccccchHHHHHH
Confidence 99999985421111100 00 00001222221 378888888 875 3455667788
Q ss_pred HHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC--CCChHHHHHHHH
Q 029158 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS--GAGIRSLRTVLS 190 (198)
Q Consensus 125 ~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~--~~gi~~l~~~i~ 190 (198)
+..+...++|+++|+||+|-..++. ....+.+++.+ +.|++++|+-. .+.+..+++.+.
T Consensus 173 i~eLk~~~kPfiivlN~~dp~~~et-~~l~~~l~eky------~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 173 IEELKELNKPFIILLNSTHPYHPET-EALRQELEEKY------DVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHHHhcCCCEEEEEECcCCCCchh-HHHHHHHHHHh------CCceEEEEHHHcCHHHHHHHHHHHH
Confidence 9999999999999999999544332 22233333322 37888888854 455555555443
No 303
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.53 E-value=2.6e-14 Score=120.74 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc--------eeecC------CCCceeEEE-------EEEeCCceEEEeCCCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTIN-------FFKLGTKLCLVDLPGY 77 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~--------~~~~~------~~~~t~~~~-------~~~~~~~~~iiDtpG~ 77 (198)
...++|+++|..++|||||+++|+..... ....+ ..++|.... +...+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34679999999999999999999753100 00001 122333221 1223578999999997
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 146 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 146 (198)
.+- ..........+|++++|+|+..++...+..++..+...+.|.++++||+|...
T Consensus 97 ~~f-------------~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDF-------------GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred ccc-------------HHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 431 11222333449999999999998888888888877777889999999999974
No 304
>PTZ00099 rab6; Provisional
Probab=99.51 E-value=1.7e-13 Score=96.86 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=72.4
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEec
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTK 141 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK 141 (198)
...+.||||||.. .+..+...|+. .+|++++|+|.++..+-.. ..++..+.. ...|+++|+||
T Consensus 28 ~v~l~iwDt~G~e----------~~~~~~~~~~~---~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQE----------RFRSLIPSYIR---DSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChH----------HhhhccHHHhC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 4678999999952 22334445554 4899999999987322112 234444432 25789999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 142 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 142 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+|+........ ......... ....++++||++|+|+++++++|.+.+..
T Consensus 95 ~DL~~~~~v~~--~e~~~~~~~---~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 95 TDLGDLRKVTY--EEGMQKAQE---YNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cccccccCCCH--HHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99964321110 111111111 13578999999999999999999988754
No 305
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.51 E-value=5.2e-13 Score=98.89 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=92.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC--ceeE-----------------EEEEE------------
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG--LTQT-----------------INFFK------------ 64 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~--~t~~-----------------~~~~~------------ 64 (198)
..+|.+.|.||+|||||+..|.... .++...-.|. .|-. .-+..
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~ 130 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR 130 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence 4589999999999999999987421 2222211111 1100 00100
Q ss_pred -----------eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC
Q 029158 65 -----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT 133 (198)
Q Consensus 65 -----------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~ 133 (198)
.++.+.|++|.|.|... -+.... +|.+++|.-+..|-. .+.++. .-..+
T Consensus 131 at~~~i~~ldAaG~DvIIVETVGvGQse---------v~I~~~-------aDt~~~v~~pg~GD~---~Q~iK~-GimEi 190 (323)
T COG1703 131 ATREAIKLLDAAGYDVIIVETVGVGQSE---------VDIANM-------ADTFLVVMIPGAGDD---LQGIKA-GIMEI 190 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcch---------hHHhhh-------cceEEEEecCCCCcH---HHHHHh-hhhhh
Confidence 13589999999987641 222222 788888876654322 111110 01123
Q ss_pred cEEEEEeccCCCCcHHHH-HHHHHHHHHH--HhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 134 KYQVVLTKTDTVFPIDVA-RRAMQIEESL--KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 134 p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~--~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
--|+|+||.|....+... ++...++... ........|++.+||.+|+|+++|++.|.++.++.
T Consensus 191 aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 191 ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 449999999965443222 2222222221 22334468899999999999999999999988753
No 306
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.6e-13 Score=102.81 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------------eCCceEEEeCCCCcc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------LGTKLCLVDLPGYGF 79 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------------~~~~~~iiDtpG~~~ 79 (198)
..++.+||.||+|||||+|+++... ....+||.||.+....- ....+.++|.+|+-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 4689999999999999999999984 78899999997743211 124689999999865
Q ss_pred ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
+.+.. +.+-.+|+.+.+.+|+++.|+|+..
T Consensus 80 GAs~G------eGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 80 GASKG------EGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CcccC------CCcchHHHHhhhhcCeEEEEEEecC
Confidence 54333 4556688888888999999999875
No 307
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.51 E-value=3.1e-13 Score=102.90 Aligned_cols=160 Identities=23% Similarity=0.297 Sum_probs=114.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc------------cceeecCCCCceeEEEE--EEe------------------
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQW------------GVVRTSDKPGLTQTINF--FKL------------------ 65 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~------------~~~~~~~~~~~t~~~~~--~~~------------------ 65 (198)
.+....|...|..++|||||+..|...+ .+....-..+-+.++.+ +..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3456779999999999999999988542 00000111112222211 110
Q ss_pred ------CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEE
Q 029158 66 ------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQV 137 (198)
Q Consensus 66 ------~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~ii 137 (198)
+.-+.|+||.|+ +.+++..++.. +..|..++++-|.++++...++.+-.+...+.|+|+
T Consensus 194 ~vv~~aDklVsfVDtvGH-------------EpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviV 260 (527)
T COG5258 194 AVVKRADKLVSFVDTVGH-------------EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIV 260 (527)
T ss_pred HhhhhcccEEEEEecCCc-------------cHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEE
Confidence 124789999997 45555555443 358999999999999999999999988888999999
Q ss_pred EEeccCCCCcHHHHHHHHHHHHHHHhccCC----------------------CCCcEEeccCCCCChHHHHHHHH
Q 029158 138 VLTKTDTVFPIDVARRAMQIEESLKANNSL----------------------VQPVMMVSSKSGAGIRSLRTVLS 190 (198)
Q Consensus 138 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~v~~~Sa~~~~gi~~l~~~i~ 190 (198)
|+||+|+.+.+..+...+.+.+.+....+. ..|+|.+|+.+|+|++-|.+.+.
T Consensus 261 vvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 261 VVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred EEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 999999999888777777777665532221 47899999999999876666544
No 308
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=102.60 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=103.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE----EEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
-....|.|+++|.+|+|||||+++|.+. . ....+...-|.|.+ ..+.+..+.+.||-||.... +...-..|..
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~A-a-l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL-P~~LvaAF~A 250 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKA-A-LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL-PIQLVAAFQA 250 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhh-h-cCccchhheeccchhhhccCCCCcEEEEeechhhhhhC-cHHHHHHHHH
Confidence 3455688999999999999999999965 2 22333334444433 22346789999999986532 1222222222
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHH-HHHHHHhhCCc-------EEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTK-------YQVVLTKTDTVFPIDVARRAMQIEESLKAN 164 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~p-------~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 164 (198)
.+.....+|+++.|+|.+++..+...+ ++..+...++| ++=|-||.|.....-..+
T Consensus 251 ----TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------------ 314 (410)
T KOG0410|consen 251 ----TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------------ 314 (410)
T ss_pred ----HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------------
Confidence 223344589999999999966555544 45666655554 566889999865331100
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..-.+.+||.+|+|++++++.+.....
T Consensus 315 ---~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 315 ---KNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ---cCCccccccccCccHHHHHHHHHHHhh
Confidence 122778999999999999999877653
No 309
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=2.6e-14 Score=97.62 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=104.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC------ceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG------LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~------~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
....+++++|..++||||+|.++|.. .+..++.. ..+++.+...+....+|||.|. +.++.
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkg---ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq----------eEfDa 84 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKG---IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ----------EEFDA 84 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcc---ccccccccccchhhhhHHHHhhHHHHHHHHHHhccc----------hhHHH
Confidence 45689999999999999999999976 22222211 1223334444567889999994 45577
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLV 168 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (198)
+...|+++ +.+.++|+...+..+ +...+|...++.. ++|.++|-||+|+++...... ..+.+...+ .
T Consensus 85 ItkAyyrg---aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l------~ 155 (246)
T KOG4252|consen 85 ITKAYYRG---AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL------H 155 (246)
T ss_pred HHHHHhcc---ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHh------h
Confidence 77788877 566777777765222 2335566666543 699999999999987653322 112222222 3
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhh
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.+++-+|++..-|+..+|.++.+.+
T Consensus 156 ~RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 156 KRLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 6788999999999999999988765
No 310
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.8e-13 Score=106.50 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....|+++||||+||||||.+|............ +-+++ +.....+++|+++|.- +.+++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i---~GPiTvvsgK~RRiTflEcp~D----------------l~~mi 128 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI---RGPITVVSGKTRRITFLECPSD----------------LHQMI 128 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc---CCceEEeecceeEEEEEeChHH----------------HHHHH
Confidence 3446789999999999999999875211112221 11222 3344577999999952 33566
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCc-HHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP-IDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
.-...+|+|++++|++.|+.....+++..+..++.| ++-|+|+.|+... ..+......++-+++...-.+..+|++|.
T Consensus 129 DvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsg 208 (1077)
T COG5192 129 DVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSG 208 (1077)
T ss_pred hHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence 666679999999999999999999999999999987 5669999999854 46777777777777776667899999997
Q ss_pred CC
Q 029158 177 KS 178 (198)
Q Consensus 177 ~~ 178 (198)
..
T Consensus 209 V~ 210 (1077)
T COG5192 209 VE 210 (1077)
T ss_pred cc
Confidence 64
No 311
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.2e-13 Score=100.89 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=121.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceee-------------------------cCCCCceeEE--------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-------------------------SDKPGLTQTI-------------- 60 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~-------------------------~~~~~~t~~~-------------- 60 (198)
...+|.-+|..-.||||++.++.+...+.+- .++|.+-+..
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 4568899999999999999999875211100 0011100000
Q ss_pred --EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CCcCcHHHHHHHHhhC-CcEE
Q 029158 61 --NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQ 136 (198)
Q Consensus 61 --~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~-~p~i 136 (198)
..+..-..+.|+|+||+ +-++..++.+....|++++++-+++. ++.+..+.+..++-.. +.++
T Consensus 117 ~~~~~klvRHVSfVDCPGH-------------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii 183 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII 183 (466)
T ss_pred CCCceEEEEEEEeccCCch-------------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE
Confidence 00111236889999997 66788888888889999999988774 3455666666666554 5788
Q ss_pred EEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 137 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++-||+|+...+...+..++++.........+.|++++||.-+.|++.+.++|....+
T Consensus 184 ilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 184 ILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 9999999999888888889999988877777899999999999999999999998765
No 312
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.48 E-value=1.1e-13 Score=97.58 Aligned_cols=156 Identities=14% Similarity=0.049 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-----eEEEEE-EeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-----~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
...++++||..++|||+|+..+..+ .....+.+|. .+..+. ....++.+|||.|..+- +.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~---~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY----------Dr- 68 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTN---AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY----------DR- 68 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccC---cCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc----------cc-
Confidence 4578999999999999999998876 3344443332 223443 44567899999996442 11
Q ss_pred HHHHHhcccccceEEEEEeCCCC--CCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHH-HHHH---------HHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDV-ARRA---------MQIEE 159 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~-~~~~---------~~~~~ 159 (198)
++.+ .-..+|.++++++..+. +.....+|+..+..+ +.|+|+|++|.||.+.... ++.. ++-++
T Consensus 69 lRpl--sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~ 146 (198)
T KOG0393|consen 69 LRPL--SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLE 146 (198)
T ss_pred cccc--CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHH
Confidence 2211 12336787777766553 333345566666655 6999999999999854311 1111 11111
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
... ......++++||++..|++++|+.....+
T Consensus 147 lA~--~iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 147 LAK--EIGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHH--HhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 111 11136799999999999999999877654
No 313
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.47 E-value=7.6e-13 Score=95.24 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=54.4
Q ss_pred cceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc--HHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158 104 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181 (198)
Q Consensus 104 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g 181 (198)
+|.++.|+|+.++..... ....++ ...-++++||+|+.+. .+.+...+.+++. ....+++++||++|+|
T Consensus 113 ~~~~i~vvD~~~~~~~~~-~~~~qi---~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~Sa~~g~g 183 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-KGGPGI---TRSDLLVINKIDLAPMVGADLGVMERDAKKM-----RGEKPFIFTNLKTKEG 183 (199)
T ss_pred hCcEEEEEEcchhhhhhh-hhHhHh---hhccEEEEEhhhccccccccHHHHHHHHHHh-----CCCCCEEEEECCCCCC
Confidence 467899999976433211 111112 2334999999999853 2333333333333 2368999999999999
Q ss_pred hHHHHHHHHHhhc
Q 029158 182 IRSLRTVLSKIAR 194 (198)
Q Consensus 182 i~~l~~~i~~~~~ 194 (198)
+++++++|.+.+.
T Consensus 184 i~el~~~i~~~~~ 196 (199)
T TIGR00101 184 LDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999998764
No 314
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-12 Score=99.46 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=97.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc-eeecCCCCceeEEEEEEe-------------C------------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKL-------------G------------------ 66 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~~-------------~------------------ 66 (198)
...|.|+++|+.+.||||+|+.|+.++.- ..++++|.|..-..+... +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 46789999999999999999999988421 123333332222111110 0
Q ss_pred -----------CceEEEeCCCCccccchhHHHH-HHHHHHHHHHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhhCC
Q 029158 67 -----------TKLCLVDLPGYGFAYAKEEVKD-AWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQT 133 (198)
Q Consensus 67 -----------~~~~iiDtpG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~ 133 (198)
..+.++||||+-+...+.-.+. -+...+.+|... +|.|++++|+-. +.+.+..++++.+....-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCcc
Confidence 1699999999866533221111 112233333333 999999999865 455666788999988878
Q ss_pred cEEEEEeccCCCCcHHHHHHHHHH-HHHHHhccCCCCCcEEeccC
Q 029158 134 KYQVVLTKTDTVFPIDVARRAMQI-EESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 134 p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~Sa~ 177 (198)
.+-+|+||+|.++.+++....-.+ +..-.-..-+.++-+++-+.
T Consensus 213 kiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvYigSf 257 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVYIGSF 257 (532)
T ss_pred eeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEEeecc
Confidence 889999999999988876655333 33333233333344444443
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.3e-13 Score=111.48 Aligned_cols=131 Identities=18% Similarity=0.266 Sum_probs=95.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-ce---ee------------cCCCCceeE---EEEEEeC-CceEEEeCCCC
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-VV---RT------------SDKPGLTQT---INFFKLG-TKLCLVDLPGY 77 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~---~~------------~~~~~~t~~---~~~~~~~-~~~~iiDtpG~ 77 (198)
..+.++|.++|+..+|||||..+|+.... +. .+ ....+.|.. ..+...+ ..+.+|||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 56788999999999999999999884310 01 11 111223332 2355554 89999999998
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHH
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 157 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 157 (198)
- ++..+..+....+|++++|+|+.+|...+...+++++.+.++|.++++||+|....+ .....+.+
T Consensus 87 V-------------DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~-~~~~~~~l 152 (697)
T COG0480 87 V-------------DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD-FYLVVEQL 152 (697)
T ss_pred c-------------ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC-hhhhHHHH
Confidence 3 334455555566999999999999999999999999999999999999999998643 33444555
Q ss_pred HHHHH
Q 029158 158 EESLK 162 (198)
Q Consensus 158 ~~~~~ 162 (198)
+..+.
T Consensus 153 ~~~l~ 157 (697)
T COG0480 153 KERLG 157 (697)
T ss_pred HHHhC
Confidence 55544
No 316
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.47 E-value=2.7e-13 Score=94.54 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=91.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC----ccceeecCCCCceeEEE-EEE-eCCceEEEeCC-CCccccchhHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTIN-FFK-LGTKLCLVDLP-GYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~-~~~-~~~~~~iiDtp-G~~~~~~~~~~~~~~~~~ 93 (198)
..+|.+.|++|||||+|+.+++.. ++++.+.+...|..+.. +.. .+.++.-+.|. |... ..+.....++++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~--da~m~~~ai~~l 90 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHL--DASMNLEAIEEL 90 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCC--cHHHHHHHHHHH
Confidence 368999999999999999987753 34444444444433322 122 34556666666 4311 112222333333
Q ss_pred HHHHHh-------c-c--------cccc-eEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHH
Q 029158 94 VKEYVS-------T-R--------VSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 156 (198)
Q Consensus 94 ~~~~~~-------~-~--------~~~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 156 (198)
..++-. . . ...| +-++|+|..+|.....+ ....+ -..-++|+||.|+.+.-+.+ .+.
T Consensus 91 ~~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K-~gP~i---~~aDllVInK~DLa~~v~~d--lev 164 (202)
T COG0378 91 VLDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRK-GGPGI---FKADLLVINKTDLAPYVGAD--LEV 164 (202)
T ss_pred hhcCCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCccc-CCCce---eEeeEEEEehHHhHHHhCcc--HHH
Confidence 332110 0 0 0022 56777787765322211 00000 01348999999998754331 122
Q ss_pred HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+.+.... .++..|++++|+++|+|++++++|+...+
T Consensus 165 m~~da~~-~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 165 MARDAKE-VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHH-hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 2222222 24579999999999999999999998764
No 317
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=8.3e-14 Score=100.85 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=111.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...++.++|.|++||||++..|.+.. .++..+.++|-. ......+..+++.|.||+.+..... ...-++
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdg------kgrg~q 129 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG------KGRGKQ 129 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccC------CCCccE
Confidence 34589999999999999999999974 566667666533 2344668899999999987754332 122345
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc--------------------------------------HH---------------
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD--------------------------------------HE--------------- 123 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~--------------------------------------~~--------------- 123 (198)
.+...+.|+++++|+|...++.... .+
T Consensus 130 viavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAd 209 (358)
T KOG1487|consen 130 VIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSAD 209 (358)
T ss_pred EEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchh
Confidence 6666777999999999865322110 01
Q ss_pred -----------HHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHH
Q 029158 124 -----------LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 190 (198)
Q Consensus 124 -----------~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~ 190 (198)
++..++.. -+|.+.++||+|-.+-++++- .......+++||.+++|++++++.+.
T Consensus 210 i~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi------------i~~iphavpISA~~~wn~d~lL~~mw 277 (358)
T KOG1487|consen 210 IALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI------------IYTIPHAVPISAHTGWNFDKLLEKMW 277 (358)
T ss_pred eeeecCcchhhhhhhhccCceeeeeeeeecccceeeeeccce------------eeeccceeecccccccchHHHHHHHh
Confidence 11112211 258899999999887655421 11136789999999999999999999
Q ss_pred HhhccccC
Q 029158 191 KIARFAKV 198 (198)
Q Consensus 191 ~~~~~~r~ 198 (198)
+.+...|+
T Consensus 278 eyL~Lvri 285 (358)
T KOG1487|consen 278 EYLKLVRI 285 (358)
T ss_pred hcchheEE
Confidence 99888764
No 318
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.44 E-value=4.4e-13 Score=100.37 Aligned_cols=84 Identities=25% Similarity=0.288 Sum_probs=62.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--e-C-----------------CceEEEeCCCCccccch
Q 029158 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~-----------------~~~~iiDtpG~~~~~~~ 83 (198)
|+++|.|++|||||+|+|++.. ..++++++||.+..... . + .++.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5799999999999999999984 37888999997644211 1 1 24999999998654322
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
. ..+..+++...+.+|++++|+|+..
T Consensus 79 ~------~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 79 G------EGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred h------hHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2 3344567777777999999999854
No 319
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.39 E-value=6.9e-13 Score=103.70 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=91.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc----cceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.+++++|.+|+|||||+|+|++.. .....+..++||........+..+.++||||+... +.....+......+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~---~~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS---HQMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh---hHhhhhcCHHHHhh
Confidence 479999999999999999999853 23567889999999887777777899999998653 11111111111123
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 160 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 160 (198)
+........+.|.++..+.+.......++.+...+..+.+.+++.+.......++..+.+++.
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~ 294 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKH 294 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence 333445677889999887555555444555544456678888888877665554444444443
No 320
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.38 E-value=2.1e-12 Score=89.78 Aligned_cols=57 Identities=33% Similarity=0.588 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~ 77 (198)
...+|+++|.||+|||||+|+|.+. .....++.+++|+...+...+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 3467899999999999999999997 56788999999998887777777999999995
No 321
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.37 E-value=1.2e-11 Score=85.89 Aligned_cols=95 Identities=25% Similarity=0.333 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 90 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 90 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
|..+.+..+.. +|++++|+|++.+....+.++...+...+.|+++|+||+|+.+........ .+. . ..+.
T Consensus 2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~-~~~---~---~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWK-SIK---E---SEGI 71 (156)
T ss_pred HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHH-HHH---H---hCCC
Confidence 34444444443 899999999987666666666666666689999999999997543322211 111 1 1246
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++++||+++.|++++++.+.+.++
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 8999999999999999999988754
No 322
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.36 E-value=2.7e-12 Score=90.18 Aligned_cols=56 Identities=34% Similarity=0.555 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~ 77 (198)
..+++++|.||+|||||+|+|.+. ....+++.+++|+..+....+.++.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 468999999999999999999998 56778999999999887777788999999995
No 323
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-11 Score=88.07 Aligned_cols=145 Identities=21% Similarity=0.202 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
+..+|+++|.+|+||||+=..++.. .++.-...++.|.++...+. +.-+.+||..|. +..+.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq-------------e~fme 68 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ-------------EEFME 68 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCc-------------HHHHH
Confidence 5678999999999999998888876 45666777888888876654 356889999995 34444
Q ss_pred HHHhc-----ccccceEEEEEeCCCCCCcCcHHHHHH----HHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc
Q 029158 96 EYVST-----RVSLKRVCLLIDTKWGVKPRDHELISL----MERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 164 (198)
Q Consensus 96 ~~~~~-----~~~~d~vi~v~d~~~~~~~~~~~~~~~----~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 164 (198)
.|+.. -...+++++|+|+++.-.+.|.+.++. +... ...+...++|+|++.....+...+.-.+.+...
T Consensus 69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~ 148 (295)
T KOG3886|consen 69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRL 148 (295)
T ss_pred HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHh
Confidence 55542 134788999999998656666555444 3222 456888999999997665554444444433333
Q ss_pred cC-CCCCcEEeccCC
Q 029158 165 NS-LVQPVMMVSSKS 178 (198)
Q Consensus 165 ~~-~~~~v~~~Sa~~ 178 (198)
.. ..+.++++|.-+
T Consensus 149 s~~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 149 SRPLECKCFPTSIWD 163 (295)
T ss_pred cccccccccccchhh
Confidence 22 235667766544
No 324
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.5e-11 Score=90.16 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=109.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecC--CCC-----ceeEEEEEEeCCceEEEeCCCCccccchhHHH----HH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--KPG-----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVK----DA 89 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~--~~~-----~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~----~~ 89 (198)
..+|+++|.+|.|||||+..|++...-...++ .+. .|.+.+.......++++||.|+|+....+... +.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 57899999999999999999998741111111 111 12223333345678999999999976555421 22
Q ss_pred HHHHHHHHHh------------cccccceEEEEE-eCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHH
Q 029158 90 WEELVKEYVS------------TRVSLKRVCLLI-DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 156 (198)
Q Consensus 90 ~~~~~~~~~~------------~~~~~d~vi~v~-d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 156 (198)
++.-...|++ ......+++|.+ +..+++...++-.++.+.. ++.+|.|+-|.|.....++......
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~k 200 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIK 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 2222222222 122355666665 5566777777777777775 6899999999999999999988888
Q ss_pred HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
+...+..+. +.+... ..+.+.+.+.-..+..+++++
T Consensus 201 imsEL~sng---v~IYqf-PtDdetva~~N~~mn~~lPFA 236 (406)
T KOG3859|consen 201 IMSELVSNG---VQIYQF-PTDDETVAKANSEMNHSLPFA 236 (406)
T ss_pred HHHHHHhcC---ceeeec-cchHHHHHHHHHHhhcCCcee
Confidence 887777553 344332 233455566666666666654
No 325
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.2e-11 Score=82.41 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=95.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
.-+++++|-.|+|||||++-|-.. +....-+...+| ....+ -+..++.+|..|+..+ +..|.+....
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE~l~I--g~m~ftt~DLGGH~qA------rr~wkdyf~~--- 87 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEELSI--GGMTFTTFDLGGHLQA------RRVWKDYFPQ--- 87 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChHHhee--cCceEEEEccccHHHH------HHHHHHHHhh---
Confidence 347899999999999999998776 455555543333 33333 2567899999997432 3334443333
Q ss_pred cccccceEEEEEeCCCCCCcCc-HHHHHHH---H-hhCCcEEEEEeccCCCCcHHHHHHHH--HHHHHHHh--------c
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRD-HELISLM---E-RSQTKYQVVLTKTDTVFPIDVARRAM--QIEESLKA--------N 164 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~---~-~~~~p~iiv~nK~Dl~~~~~~~~~~~--~~~~~~~~--------~ 164 (198)
+|+++|++|+-+.-...+ +..++.+ + -.++|+++..||+|.+.+...++... .+...... .
T Consensus 88 ----v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~ 163 (193)
T KOG0077|consen 88 ----VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDS 163 (193)
T ss_pred ----hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCC
Confidence 899999999976211111 1112222 1 24799999999999987654333221 11121111 1
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
......+|.+|...+.|.-+-+.|+...
T Consensus 164 ~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCeEEEEEEEEEccCccceeeeehhhh
Confidence 1112457889998888877777776543
No 326
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.4e-11 Score=91.75 Aligned_cols=159 Identities=26% Similarity=0.379 Sum_probs=107.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-----cceeec-------CCCCceeEEE-----EEEe------------------
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-------DKPGLTQTIN-----FFKL------------------ 65 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~-------~~~~~t~~~~-----~~~~------------------ 65 (198)
..+++++|...+|||||+..|...+ ..+..+ -..+-|..+. |...
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4689999999999999999888542 001100 0111111110 0000
Q ss_pred -CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEecc
Q 029158 66 -GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 142 (198)
Q Consensus 66 -~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 142 (198)
..-++|+|.+|+. .+....+.++ -..+.+++|+.+..+..-...+.+..+...++|+.++++|+
T Consensus 247 SSKlvTfiDLAGh~-------------kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~ 313 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHA-------------KYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKM 313 (591)
T ss_pred hcceEEEeecccch-------------hhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEee
Confidence 1248999999962 2222222222 23788999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHH-----------------------hccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 143 DTVFPIDVARRAMQIEESLK-----------------------ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 143 Dl~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
|+.+...+++...++...+. .......|+|.+|+.+|+|++-+..++...
T Consensus 314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~L 386 (591)
T KOG1143|consen 314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCL 386 (591)
T ss_pred ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhc
Confidence 99998666554444443332 223335899999999999999887776654
No 327
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.6e-10 Score=87.07 Aligned_cols=146 Identities=20% Similarity=0.258 Sum_probs=107.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc--------------cceeecCCCCceeEE---EEEEeCCceEEEeCCCCcccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~ 81 (198)
....+|.-+|....|||||-.++..-. +.+......+.|... .+......+.=+|+||+
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH---- 127 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH---- 127 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch----
Confidence 345678999999999999998877420 011112223455443 23333567888999998
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCC-CcHHHHHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV-FPIDVARRAMQIEE 159 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~-~~~~~~~~~~~~~~ 159 (198)
.+++..++.+..+.|+.|+|+.+.+|...+.++.+-..+.-+++ +++.+||.|++ +++.++-...++.+
T Consensus 128 ---------ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RE 198 (449)
T KOG0460|consen 128 ---------ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRE 198 (449)
T ss_pred ---------HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999988877777755 67789999999 55555656667777
Q ss_pred HHHhcc--CCCCCcEEeccC
Q 029158 160 SLKANN--SLVQPVMMVSSK 177 (198)
Q Consensus 160 ~~~~~~--~~~~~v~~~Sa~ 177 (198)
.+..+. +...|++.-||.
T Consensus 199 lLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHcCCCCCCCCeeecchh
Confidence 776554 345889988874
No 328
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.25 E-value=3.8e-11 Score=83.46 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=64.1
Q ss_pred ccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 101 RVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
...+|++++|+|++.+....+..+.+.+... ++|+++|+||+|+.+.+........+.+. . ...++++||+.
T Consensus 6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~--~~~~~~iSa~~ 79 (157)
T cd01858 6 IDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKE----Y--PTIAFHASINN 79 (157)
T ss_pred hhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----C--cEEEEEeeccc
Confidence 3449999999999987666677777766543 48999999999998655433333333221 1 12258899999
Q ss_pred CCChHHHHHHHHHhhc
Q 029158 179 GAGIRSLRTVLSKIAR 194 (198)
Q Consensus 179 ~~gi~~l~~~i~~~~~ 194 (198)
+.|++++.+++.+.+.
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999987653
No 329
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.24 E-value=3.5e-11 Score=82.11 Aligned_cols=54 Identities=39% Similarity=0.566 Sum_probs=46.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~ 77 (198)
+++++|.+|+|||||+|+|++. ........+++|+.......+..+.++||||+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCc
Confidence 8999999999999999999988 44567777888887776666678999999997
No 330
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=3.7e-11 Score=97.26 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeec-C---------------CCCceeE---EEEEE-----eCCceEEEe
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-D---------------KPGLTQT---INFFK-----LGTKLCLVD 73 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-~---------------~~~~t~~---~~~~~-----~~~~~~iiD 73 (198)
+.....|+++|+-.+|||+|+..|..+.. .... + ..+++.. .+..- ..+-+.++|
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceecc-ccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 34567899999999999999999987731 1110 0 1111111 11111 124589999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 74 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 74 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
|||+- ++..+.......+|++++++|+.+|+.-+...+++..-..+.|+++|+||+|+.
T Consensus 204 TPGHV-------------nF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHV-------------NFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CCCcc-------------cchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 99973 334455555556999999999999999999999988888899999999999974
No 331
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.22 E-value=4.3e-11 Score=82.98 Aligned_cols=58 Identities=34% Similarity=0.487 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~ 77 (198)
....+++++|.+|+|||||+|.|.+. .....+..+++|........+..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 35678999999999999999999997 44557778899998887777788999999995
No 332
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.4e-10 Score=92.85 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=63.0
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 146 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 146 (198)
..+.++|.||++-+. ....+.......+|+++||+.+.+.+...+.+++..+.+.+..+.++.||+|...
T Consensus 206 nDivliDsPGld~~s----------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDS----------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASA 275 (749)
T ss_pred ccceeccCCCCCCch----------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhc
Confidence 378999999986531 1111222223349999999999988888888888888775555677888999986
Q ss_pred cHH--HHHHHHHHHHHHHh-ccCCCCCcEEeccCC
Q 029158 147 PID--VARRAMQIEESLKA-NNSLVQPVMMVSSKS 178 (198)
Q Consensus 147 ~~~--~~~~~~~~~~~~~~-~~~~~~~v~~~Sa~~ 178 (198)
.+. .+.++.++.+.-.. .....-.++++||+.
T Consensus 276 se~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 276 SEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred ccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 542 12233332211000 001124589999654
No 333
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.21 E-value=4e-11 Score=92.38 Aligned_cols=59 Identities=36% Similarity=0.564 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
...+++++|.|++|||||||+|.+. ....+++.||+|...+.......+.++||||+..
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~ 189 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCC
Confidence 3467999999999999999999998 6789999999999999999989999999999754
No 334
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.21 E-value=1.9e-10 Score=87.83 Aligned_cols=158 Identities=24% Similarity=0.272 Sum_probs=108.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc------------cceeecCCCCcee----EE--------------------EEE
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW------------GVVRTSDKPGLTQ----TI--------------------NFF 63 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~------------~~~~~~~~~~~t~----~~--------------------~~~ 63 (198)
...+|+++|...+|||||+..|...+ +.....-+.+-|. ++ .+.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 46799999999999999999887542 0000000111111 10 111
Q ss_pred Ee----CCceEEEeCCCCccccchhHHHHHHHHHHHHHHh--cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEE
Q 029158 64 KL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQV 137 (198)
Q Consensus 64 ~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~ii 137 (198)
.. ..-++|||++|+ +.++....- .....|...+++.++.+.--...+.+.......+|+.+
T Consensus 212 kIce~saKviTFIDLAGH-------------EkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfv 278 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGH-------------EKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFV 278 (641)
T ss_pred eeccccceeEEEEeccch-------------hhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEE
Confidence 10 124789999996 222222111 22347889999999999988999999988888999999
Q ss_pred EEeccCCCCcHHHHHHHHHHHHHHHhcc-----------------------CCCCCcEEeccCCCCChHHHHHHHH
Q 029158 138 VLTKTDTVFPIDVARRAMQIEESLKANN-----------------------SLVQPVMMVSSKSGAGIRSLRTVLS 190 (198)
Q Consensus 138 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~v~~~Sa~~~~gi~~l~~~i~ 190 (198)
|+||+|....+-+++-.+.+.+.+.... ...+|+|.+|..+|+|++-|..++.
T Consensus 279 VVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 279 VVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred EEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 9999999998877776666666554311 1148999999999999987776654
No 335
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.20 E-value=4.8e-10 Score=84.46 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=68.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--------------------CCceEEEeCCCCcc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 79 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~iiDtpG~~~ 79 (198)
..+++.+||.|++|||||+|+|.+.. ....++|.+|.+...... ...++++|.+|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 45689999999999999999999983 448999999988543221 24799999999865
Q ss_pred ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
+.+.. ..+-..|+.+.+.+|+++-|+++..
T Consensus 97 GAs~G------~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAG------EGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccC------cCchHHHHHhhhhccceeEEEEecC
Confidence 44333 3445677788888999999988865
No 336
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.19 E-value=7.7e-11 Score=89.66 Aligned_cols=60 Identities=33% Similarity=0.594 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~ 80 (198)
...+++++|.||+|||||+|+|.+. ....+++.+++|+..++...+..+.++||||+...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCC
Confidence 4568999999999999999999997 56678889999999988887888999999998553
No 337
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.19 E-value=4.9e-11 Score=85.49 Aligned_cols=57 Identities=35% Similarity=0.475 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc-------ceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~-------~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~ 77 (198)
..+++++|.+|+|||||+|+|++... ....+..++||++......+.++.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 35799999999999999999998531 1345677889999887777668999999995
No 338
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.19 E-value=3.3e-10 Score=79.80 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=66.6
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
...+++.......+|++++|+|++.+....+..+...+. +.|+++|+||+|+.+........+.++. ...+
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-------~~~~ 77 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKYFES-------KGEK 77 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCChHHHHHHHHHHHh-------cCCe
Confidence 445556666667799999999998766655555555442 5899999999999754332222222111 1356
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++.+||++++|++++.+.+...+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 89999999999999999998864
No 339
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.17 E-value=4.1e-10 Score=80.71 Aligned_cols=90 Identities=17% Similarity=0.038 Sum_probs=57.7
Q ss_pred cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH-HH-HHhccCCCCCcEEeccCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE-ES-LKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~-~~~~~~~~~~v~~~Sa~~~ 179 (198)
..+|++++|+|+++........+. ....+.|+++|+||+|+............+. .. .........+++++||+++
T Consensus 33 ~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~ 110 (190)
T cd01855 33 PKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKG 110 (190)
T ss_pred cCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCC
Confidence 448999999999874433333331 2234689999999999975432222112221 11 1111111246899999999
Q ss_pred CChHHHHHHHHHhh
Q 029158 180 AGIRSLRTVLSKIA 193 (198)
Q Consensus 180 ~gi~~l~~~i~~~~ 193 (198)
+|+++++++|.+.+
T Consensus 111 ~gi~eL~~~l~~~l 124 (190)
T cd01855 111 WGVEELINAIKKLA 124 (190)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 340
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.17 E-value=9.5e-11 Score=88.71 Aligned_cols=59 Identities=32% Similarity=0.544 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
...+++++|.||+|||||+|+|.+. ....+++.+++|+..+....+.++.++||||+..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~ 175 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILW 175 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCccc
Confidence 3568999999999999999999987 5567788999999888777777899999999844
No 341
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.16 E-value=6.6e-10 Score=84.13 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=69.7
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
....++.......+|++++|+|++.+....+..+.+.+. +.|+++|+||+|+.+........+.+++ .+.+
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~~~-------~~~~ 79 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEE-------KGIK 79 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHHHH-------cCCe
Confidence 445556666666799999999998877766666666553 6899999999999765433332222221 1357
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||+++.|+++|.+.+.+.++
T Consensus 80 vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred EEEEECCCcccHHHHHHHHHHHHH
Confidence 899999999999999999887664
No 342
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.14 E-value=3.9e-10 Score=78.17 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=59.2
Q ss_pred ceEEEEEeCCCCCCcCcHHHH-HHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChH
Q 029158 105 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 183 (198)
Q Consensus 105 d~vi~v~d~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~ 183 (198)
|++++|+|++.+....+..+. ..+...++|+++|+||+|+.+..........+++. ...+++++||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~------~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHS------YPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhh------CCceEEEEeccCCcChh
Confidence 689999999886666555554 45556689999999999997654333222222211 13678999999999999
Q ss_pred HHHHHHHHh
Q 029158 184 SLRTVLSKI 192 (198)
Q Consensus 184 ~l~~~i~~~ 192 (198)
++.+.+.+.
T Consensus 75 ~L~~~i~~~ 83 (155)
T cd01849 75 KKESAFTKQ 83 (155)
T ss_pred hHHHHHHHH
Confidence 999988654
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.13 E-value=3.2e-10 Score=79.89 Aligned_cols=57 Identities=33% Similarity=0.584 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~ 77 (198)
..++++++|.+|+|||||+|++.+. .....++.+++|...+....+..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 4468999999999999999999987 44567778888988876666678999999996
No 344
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=7.5e-10 Score=90.95 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=81.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC----------------CCceeE---EEEEEeCCceEEEeCCCC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK----------------PGLTQT---INFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~----------------~~~t~~---~~~~~~~~~~~iiDtpG~ 77 (198)
+..+..++.++-....|||||+.+|.... ..+++. .+.|-. +.....+..+.+||+||+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asn--gvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASN--GVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhc--cEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 44567889999999999999999998653 122221 112211 112224678999999998
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccC
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 143 (198)
.+ +-.+.-.....+|+.++++|+.+|...++..++++.-..+...++|+||+|
T Consensus 83 vd-------------f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 83 VD-------------FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred cc-------------hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhh
Confidence 43 222333344458999999999999999999888877777899999999999
No 345
>PRK12288 GTPase RsgA; Reviewed
Probab=99.11 E-value=3.8e-10 Score=87.66 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=43.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCC-------CceeEEEEEEeCCceEEEeCCCCcc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
.++++|.+|+|||||+|+|++.. ...++..+ .||...+++..+....++||||+.+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCc
Confidence 58999999999999999999873 33333333 3777788777765667999999865
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.10 E-value=5.7e-11 Score=81.78 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=39.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccce--ee----cCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVV--RT----SDKPGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~--~~----~~~~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
..++++|++|+|||||+|+|....... .+ ..-..||.....+..+....++||||+.+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCc
Confidence 689999999999999999999873111 11 11233666677777778899999999855
No 347
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.09 E-value=1.7e-09 Score=82.30 Aligned_cols=95 Identities=14% Similarity=0.209 Sum_probs=69.0
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
....++.......+|++++|+|++.+....+..+.+.+. +.|+++|+||+|+.+........+.+++ . +.+
T Consensus 12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~----~---~~~ 82 (287)
T PRK09563 12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEE----Q---GIK 82 (287)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHH----c---CCe
Confidence 444555666666799999999998877766666655554 7899999999999764333333222221 1 357
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||+++.|++++.+.+.+.++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHH
Confidence 899999999999999998887654
No 348
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.09 E-value=1e-09 Score=74.89 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=55.4
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+.......+|++++|+|++.+....+..+.+.+... ++|+++|+||+|+.+........+ .+... ..++++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~----~~~~~---~~~ii~ 76 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAE----YFKKE---GIVVVF 76 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHH----HHHhc---CCeEEE
Confidence 334444559999999999987777777777777665 799999999999976544332222 22221 357899
Q ss_pred eccCCCC
Q 029158 174 VSSKSGA 180 (198)
Q Consensus 174 ~Sa~~~~ 180 (198)
+||+++.
T Consensus 77 iSa~~~~ 83 (141)
T cd01857 77 FSALKEN 83 (141)
T ss_pred EEecCCC
Confidence 9998764
No 349
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=99.08 E-value=3.8e-09 Score=81.04 Aligned_cols=142 Identities=16% Similarity=0.136 Sum_probs=84.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCC--------------------------ceeE---------EEEE
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG--------------------------LTQT---------INFF 63 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~--------------------------~t~~---------~~~~ 63 (198)
|..++.|.-|||||||+++++.+. +++..-++.+ ||.. ..-.
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 567899999999999999999653 2222222111 1100 0001
Q ss_pred EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc---HHHHHHHHhhCCcEEEEEe
Q 029158 64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD---HELISLMERSQTKYQVVLT 140 (198)
Q Consensus 64 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~---~~~~~~~~~~~~p~iiv~n 140 (198)
..+....+|+|.|+.+....- . ......-+......|.++-|+|+.+.....+ ..+.+++.-.+ ++|+|
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~--~---t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlN 153 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVI--Q---TFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLN 153 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHH--H---HhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc---EEEEe
Confidence 123578899999997752111 0 1111123334445788999999987433332 22345555444 99999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 141 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
|.|+.++.+++.....+++. .+..+++.+|.
T Consensus 154 K~Dlv~~~~l~~l~~~l~~l-----np~A~i~~~~~ 184 (323)
T COG0523 154 KTDLVDAEELEALEARLRKL-----NPRARIIETSY 184 (323)
T ss_pred cccCCCHHHHHHHHHHHHHh-----CCCCeEEEccc
Confidence 99999988655544554443 33577888776
No 350
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.5e-10 Score=87.75 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=105.5
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCc-----------------------cceee------cCCCCceeEEE---EEE
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQW-----------------------GVVRT------SDKPGLTQTIN---FFK 64 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~-----------------------~~~~~------~~~~~~t~~~~---~~~ 64 (198)
++....+++++|...+||||+-..++... ..... ....+-|.... +..
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 45667899999999999999988877431 00000 01111222222 333
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-------CcHHHHHHHHhhC-CcEE
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQ-TKYQ 136 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-------~~~~~~~~~~~~~-~p~i 136 (198)
...+++++|+||+ ..+..+++.+..++|+.++|+.+..+-.+ +..+....+...+ ...|
T Consensus 155 e~~~ftiLDApGH-------------k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV 221 (501)
T KOG0459|consen 155 ENKRFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 221 (501)
T ss_pred cceeEEeeccCcc-------------cccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence 4578999999998 56677899999999999999998653211 2344444444444 5789
Q ss_pred EEEeccCCCCcHHHHHHHHHHHHHHHhcc-------CCCCCcEEeccCCCCChHHHHH
Q 029158 137 VVLTKTDTVFPIDVARRAMQIEESLKANN-------SLVQPVMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 137 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~Sa~~~~gi~~l~~ 187 (198)
+++||+|-++.+.-.++.+++.+.+.... .....++++|..+|.++.+..+
T Consensus 222 v~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 222 VLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 99999999876554444444444443322 3467799999999999987765
No 351
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.07 E-value=7e-10 Score=76.95 Aligned_cols=57 Identities=37% Similarity=0.567 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~ 77 (198)
...+++++|.+|+|||||+|++.+. ......+.+++|...++...+..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 4568999999999999999999987 45566777788877776666778999999995
No 352
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.04 E-value=1.9e-09 Score=74.90 Aligned_cols=114 Identities=21% Similarity=0.281 Sum_probs=66.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCC--------------ceeEEE---------------E-------
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG--------------LTQTIN---------------F------- 62 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~--------------~t~~~~---------------~------- 62 (198)
|.++++|..|+|||||++.++... .+....+..+ ...... +
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 467899999999999999988652 1111111111 000000 0
Q ss_pred --EEeCCceEEEeCCCCccccchhHHHHHHHH-HHHHHHhcccccceEEEEEeCCCCCCc--CcHHHHHHHHhhCCcEEE
Q 029158 63 --FKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMERSQTKYQV 137 (198)
Q Consensus 63 --~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~p~ii 137 (198)
.....+..++||||+.+.. .. ... +....+.....+|.+++++|+.+.... ....+..++...+ ++
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~---~~---~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~i 151 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPG---PV---AQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RI 151 (158)
T ss_pred HhccCCCCEEEEECCCcCCHH---HH---HHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EE
Confidence 0124678999999986531 11 111 112234445568999999999762221 1233455565545 88
Q ss_pred EEeccCC
Q 029158 138 VLTKTDT 144 (198)
Q Consensus 138 v~nK~Dl 144 (198)
|+||+|+
T Consensus 152 vlnk~dl 158 (158)
T cd03112 152 LLNKTDL 158 (158)
T ss_pred EEecccC
Confidence 9999996
No 353
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.03 E-value=3.2e-09 Score=77.94 Aligned_cols=91 Identities=19% Similarity=0.097 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-cceeecCCCCceeEEEEEEe------CCceEEEeCCCCccccchh-HHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKE-EVKDAW 90 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~~~~~~-~~~~~~ 90 (198)
.+...|+++|++++|||+|+|.|++.. ..........||+.+..+.. +..+.++||||+.+..... .....+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 345679999999999999999999872 33444455778887664433 3689999999997754322 111111
Q ss_pred HHHHHHHHhcccccceEEEEEeCCC
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
..+ .. -.++.++|.++...
T Consensus 85 ~~l-----~~-llss~~i~n~~~~~ 103 (224)
T cd01851 85 FAL-----AT-LLSSVLIYNSWETI 103 (224)
T ss_pred HHH-----HH-HHhCEEEEeccCcc
Confidence 111 11 12788888888764
No 354
>PRK12289 GTPase RsgA; Reviewed
Probab=99.03 E-value=4.8e-10 Score=87.11 Aligned_cols=57 Identities=33% Similarity=0.482 Sum_probs=44.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCC-------ceeEEEEEEeCCceEEEeCCCCccc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~iiDtpG~~~~ 80 (198)
.++++|++|+|||||+|+|++. ....++..++ ||+..+.+.......++||||+..-
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence 5899999999999999999986 3344455555 8888888777555689999998653
No 355
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.03 E-value=4.6e-09 Score=83.91 Aligned_cols=134 Identities=23% Similarity=0.242 Sum_probs=78.2
Q ss_pred CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC---------------------------------------
Q 029158 14 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--------------------------------------- 54 (198)
Q Consensus 14 ~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~--------------------------------------- 54 (198)
++-...+.|+|++||..++||||.+..+...+-++..+..-
T Consensus 301 sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR 380 (980)
T KOG0447|consen 301 SYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALR 380 (980)
T ss_pred cccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHH
Confidence 33455688999999999999999999988652111111100
Q ss_pred -------------CceeEEE---EEEeC---CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 55 -------------GLTQTIN---FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 55 -------------~~t~~~~---~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
++|.... ..-.+ .+.+++|.||+..+...+...+.-+.+.+....+..+.++||+++--.+
T Consensus 381 ~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS 460 (980)
T KOG0447|consen 381 HEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS 460 (980)
T ss_pred HHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC
Confidence 0111100 00011 3689999999876544433222223333333333344788888874332
Q ss_pred -CCC-cCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 116 -GVK-PRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 116 -~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
+.. ..--++..++...+.+.|+|+||+|+...
T Consensus 461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 111 12234566667778999999999999754
No 356
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.03 E-value=2.8e-09 Score=71.55 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC---ceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
-..+|.++|.+..|||||+-.+.+...-.......+ ..+.......+..+.+||..|. ++...+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~-------------~~~~n~ 85 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ-------------REFINM 85 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc-------------Hhhhcc
Confidence 357899999999999999988887631111111111 1112223333567899999995 111211
Q ss_pred HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHhhCC--cEEEEEeccCCCC--cHHHH-HHHHHHHHHHHhccCCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERSQT--KYQVVLTKTDTVF--PIDVA-RRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~~~--p~iiv~nK~Dl~~--~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (198)
.--....+-+++|++|.++...-+ -.+|+++.+..+. --|+|+||-|+.- +.+.+ .+..+...... ....+
T Consensus 86 lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk---~mnAs 162 (205)
T KOG1673|consen 86 LPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAK---VMNAS 162 (205)
T ss_pred CceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHH---HhCCc
Confidence 111223356788999988643322 2567887776542 1367899999742 22222 22222222221 22588
Q ss_pred cEEeccCCCCChHHHHHHHHH
Q 029158 171 VMMVSSKSGAGIRSLRTVLSK 191 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~ 191 (198)
.|++|+.+.-|++.+|..+..
T Consensus 163 L~F~Sts~sINv~KIFK~vlA 183 (205)
T KOG1673|consen 163 LFFCSTSHSINVQKIFKIVLA 183 (205)
T ss_pred EEEeeccccccHHHHHHHHHH
Confidence 999999999999999986654
No 357
>PRK13796 GTPase YqeH; Provisional
Probab=99.02 E-value=7e-10 Score=87.02 Aligned_cols=57 Identities=32% Similarity=0.420 Sum_probs=47.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc----cceeecCCCCceeEEEEEEeCCceEEEeCCCCc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 78 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~ 78 (198)
.+++++|.+|+|||||+|+|++.. .....+..++||.+......+....++||||+.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence 479999999999999999998542 234578889999998877776678999999984
No 358
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.02 E-value=8.6e-10 Score=81.97 Aligned_cols=56 Identities=32% Similarity=0.459 Sum_probs=41.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecC-------CCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
..++++|++|+|||||+|+|.+.. ...++. ...||+....... ..-.++||||+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccc
Confidence 578999999999999999999863 222222 2347877776666 3458999999865
No 359
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.96 E-value=1.2e-09 Score=77.40 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=70.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc----CccceeecCCCC-ce-------------eEE------------------E-EEE
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR----QWGVVRTSDKPG-LT-------------QTI------------------N-FFK 64 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~----~~~~~~~~~~~~-~t-------------~~~------------------~-~~~ 64 (198)
|.+++.|..|||||||+++++. ..++....+..+ .. ... . ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 5688999999999999999992 223343433332 00 000 0 011
Q ss_pred e--CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC--CCcCcHHHHHHHHhhCCcEEEEEe
Q 029158 65 L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERSQTKYQVVLT 140 (198)
Q Consensus 65 ~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~p~iiv~n 140 (198)
. ..+..++++.|..+...- .+. ...+...-..+.++.|+|+..- .......+..++...+ ++|+|
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l-----~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD---vIvln 149 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPL-----ILQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD---VIVLN 149 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGH-----HHH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S---EEEEE
T ss_pred cCCCcCEEEECCccccccchh-----hhc---cccccccccccceeEEeccccccccccchhhhhhcchhcC---EEEEe
Confidence 1 357899999997654221 001 2222333346889999999652 1112223344454444 99999
Q ss_pred ccCCCCcHH-HHHHHHHHHHH
Q 029158 141 KTDTVFPID-VARRAMQIEES 160 (198)
Q Consensus 141 K~Dl~~~~~-~~~~~~~~~~~ 160 (198)
|+|+.+..+ .+...+.+++.
T Consensus 150 K~D~~~~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 150 KIDLVSDEQKIERVREMIREL 170 (178)
T ss_dssp -GGGHHHH--HHHHHHHHHHH
T ss_pred ccccCChhhHHHHHHHHHHHH
Confidence 999998763 24444444443
No 360
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.96 E-value=2e-09 Score=83.59 Aligned_cols=87 Identities=21% Similarity=0.138 Sum_probs=63.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--------------------CCceEEEeCCCCcccc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAY 81 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~iiDtpG~~~~~ 81 (198)
.++.++|.|++|||||+++|.+.. .....+++.||.+...... ...+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~-~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLL-GNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCC-ccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 678999999999999999999983 3377888888765332111 1368999999986543
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
... ..+...++...+.+|+++.|+++..
T Consensus 82 s~g------~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKG------EGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcc------cCcchHHHHHHHhCCEEEEEEeCCC
Confidence 222 2234467777777999999999864
No 361
>PRK12289 GTPase RsgA; Reviewed
Probab=98.93 E-value=7.3e-09 Score=80.59 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=58.2
Q ss_pred cccceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
.++|.+++|+|+.++..... ..++..+...+.|+++|+||+|+.+..+.....+ .+.. .+.+++++||+++
T Consensus 88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~----~~~~---~g~~v~~iSA~tg 160 (352)
T PRK12289 88 ANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQD----RLQQ---WGYQPLFISVETG 160 (352)
T ss_pred hcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHH----HHHh---cCCeEEEEEcCCC
Confidence 34899999999975321211 2344444556899999999999986544332222 2221 2467999999999
Q ss_pred CChHHHHHHHHHh
Q 029158 180 AGIRSLRTVLSKI 192 (198)
Q Consensus 180 ~gi~~l~~~i~~~ 192 (198)
.|+++|++++...
T Consensus 161 ~GI~eL~~~L~~k 173 (352)
T PRK12289 161 IGLEALLEQLRNK 173 (352)
T ss_pred CCHHHHhhhhccc
Confidence 9999999988653
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.91 E-value=2.2e-08 Score=77.00 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC------------ceeEEEEE-------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG------------LTQTINFF------------------- 63 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~------------~t~~~~~~------------------- 63 (198)
....++++|++|+||||++..|.... .+........ .-....+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999887421 1111111100 00001110
Q ss_pred -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh--cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEe
Q 029158 64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 140 (198)
Q Consensus 64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n 140 (198)
..+.++.++||||..... ....+....+.+ ... ....++.+++|+|+..+ ...........+.-.+.-+|+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~--~~l~~eL~~~~~-v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~~~~giIlT 267 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNK--TNLMEELKKIKR-VIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAVGLTGIILT 267 (318)
T ss_pred HhCCCCEEEEeCCCCCcCC--HHHHHHHHHHHH-HHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhCCCCEEEEE
Confidence 124689999999964321 111111122111 111 11236789999999853 2222222222221235579999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 141 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~ 187 (198)
|.|...... .......+. ..|+.+++ +|++++++..
T Consensus 268 KlD~t~~~G--~~l~~~~~~-------~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 268 KLDGTAKGG--VVFAIADEL-------GIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCCCcc--HHHHHHHHH-------CCCEEEEe--CCCChhhCcc
Confidence 999664332 222222221 58999998 8888877754
No 363
>PRK00098 GTPase RsgA; Reviewed
Probab=98.90 E-value=5.9e-09 Score=79.77 Aligned_cols=57 Identities=32% Similarity=0.493 Sum_probs=42.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCC-------CCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
..++++|++|+|||||+|+|++.. ....+.. ..||+.......+....++||||+.+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 468999999999999999999863 2222222 23677667666665679999999863
No 364
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.90 E-value=1.3e-08 Score=75.77 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=57.5
Q ss_pred ccceEEEEEeCCCCC-CcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCC
Q 029158 103 SLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 180 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~ 180 (198)
.+|.+++|+|+.++. .... ..++..+...+.|+++|+||+||.+...... ...+.+.. .+.+++++||++|+
T Consensus 36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~---~~~~~~~~---~g~~v~~~SAktg~ 109 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEK---EQLDIYRN---IGYQVLMTSSKNQD 109 (245)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHH---HHHHHHHH---CCCeEEEEecCCch
Confidence 389999999998633 2111 2345555556899999999999976443321 11122222 25789999999999
Q ss_pred ChHHHHHHHHH
Q 029158 181 GIRSLRTVLSK 191 (198)
Q Consensus 181 gi~~l~~~i~~ 191 (198)
|++++++.+..
T Consensus 110 gi~eLf~~l~~ 120 (245)
T TIGR00157 110 GLKELIEALQN 120 (245)
T ss_pred hHHHHHhhhcC
Confidence 99999998764
No 365
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.90 E-value=5.6e-09 Score=78.37 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=43.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc--cceeec----CCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQW--GVVRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~--~~~~~~----~~~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
..+++|++|+|||||+|+|.... ....++ .-..||+....+..+..=.++||||+.+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCc
Confidence 68999999999999999999742 111111 2244788888888877789999999865
No 366
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.87 E-value=4e-08 Score=77.11 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH-HHHHHHHHHHHHHHhccCC
Q 029158 89 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSL 167 (198)
Q Consensus 89 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 167 (198)
.+..+...+.. .++++++|+|+.+....-..++.+.+. +.|+++|+||+|+.... ..++..+.+++........
T Consensus 52 ~f~~~l~~~~~---~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 52 DFLNLLNSLGD---SNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHhhccc---CCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 33444444433 378999999997643333333333332 68999999999997543 2233334444333332211
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHh
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
...++++||++++|++++++.|.+.
T Consensus 127 ~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2358999999999999999999765
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.87 E-value=1.9e-07 Score=70.42 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCC------------ceeEEEEE-------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPG------------LTQTINFF------------------- 63 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~------------~t~~~~~~------------------- 63 (198)
....++++|++|+||||++..|... .++........ .-....+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999998887632 11211111100 00001111
Q ss_pred -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH-hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEec
Q 029158 64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV-STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 141 (198)
Q Consensus 64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 141 (198)
..+..+.++||||.... .....+.+..+.+... .....+|.+++|+|+..+ ...........+.-...-+|+||
T Consensus 151 ~~~~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTK 226 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTK 226 (272)
T ss_pred HHCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEc
Confidence 12468999999996442 1111111111111110 011237889999999742 22323222222212356789999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158 142 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 142 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~ 187 (198)
+|....... ........ ..|+.+++ +|++++++..
T Consensus 227 lDe~~~~G~--~l~~~~~~-------~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 227 LDGTAKGGI--ILSIAYEL-------KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred cCCCCCccH--HHHHHHHH-------CcCEEEEe--CCCChHhCcc
Confidence 999764321 11222211 47888887 7888877654
No 368
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=1.3e-08 Score=77.49 Aligned_cols=57 Identities=30% Similarity=0.385 Sum_probs=41.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeec-------CCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
..++++|++|+|||||+|.|++.. ....+ ....||.............++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL-DLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh-hccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 579999999999999999999863 22111 1233666666666654568999999844
No 369
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1e-08 Score=71.23 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE----EEEEEe-C-CceEEEeCCCCccccchhHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKL-G-TKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~----~~~~~~-~-~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
...+++++|..|.||||++++.+... ....++.|+.- ..+... + .++..|||.|...- ...
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltge---Fe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~----------ggl 75 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGE---FEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK----------GGL 75 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhccc---ceecccCcceeEEeeeeeecccCcEEEEeeecccceee----------ccc
Confidence 35688999999999999999988763 23333333321 122222 2 57899999995221 000
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh-CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
-.-|+-. ...+++++|..+.+.-.. .+.-+.++.. ++|+++++||.|........ +.........+.
T Consensus 76 rdgyyI~---~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~-------k~v~~~rkknl~ 145 (216)
T KOG0096|consen 76 RDGYYIQ---GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKA-------KPVSFHRKKNLQ 145 (216)
T ss_pred ccccEEe---cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccccccc-------ccceeeecccce
Confidence 0011111 234677788776444333 3334444433 58999999999987643111 112222344678
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.+++||+...|.+.-|-|+.+.+
T Consensus 146 y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 146 YYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred eEEeecccccccccchHHHhhhh
Confidence 99999999999999888887754
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=98.84 E-value=4.2e-08 Score=75.82 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCC---ce---------eEEEE--------------------E
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPG---LT---------QTINF--------------------F 63 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~---~t---------~~~~~--------------------~ 63 (198)
...|+++|++|+||||++..|... ..+........ .. ....+ .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 467999999999999988777632 11211111100 00 00000 0
Q ss_pred EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccC
Q 029158 64 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143 (198)
Q Consensus 64 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 143 (198)
..+.++.++||+|..... ...+.++ ..+.. ....|.+++|+|+..+ ....+..+.....-..--+++||.|
T Consensus 220 ~~~~DvVLIDTaGr~~~~-----~~lm~eL-~~i~~-~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHTD-----ANLMDEL-KKIVR-VTKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred hCCCCEEEEECCCccCCc-----HHHHHHH-HHHHH-hhCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeec
Confidence 124579999999964321 1111221 12221 2236889999999653 2222223333322234578999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158 144 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~ 187 (198)
....... ....... ...|+.+++ +|++++++..
T Consensus 291 ~~~~~G~--~ls~~~~-------~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 291 ADAKGGA--ALSIAYV-------IGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCCccH--HHHHHHH-------HCcCEEEEe--CCCChhhccc
Confidence 9754321 1122221 157999987 7898887754
No 371
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.83 E-value=2.8e-07 Score=71.06 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCCce-eE--------EEEEE-----------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLT-QT--------INFFK----------------------- 64 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t-~~--------~~~~~----------------------- 64 (198)
+.|..++.|.-|||||||+|+++... +++...+..+.. .+ ..+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 56889999999999999999998542 223332322200 00 00000
Q ss_pred ------eCCceEEEeCCCCccccchhHHHHHHHHHHHH-----HHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh
Q 029158 65 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE-----YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS 131 (198)
Q Consensus 65 ------~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~ 131 (198)
......+|+|.|+.+. ..+... .+...-..+.++.|+|+.......+ .....++...
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p----------~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A 152 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADP----------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA 152 (318)
T ss_pred HHhccCCCCCEEEEECCCccCH----------HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC
Confidence 1256789999998653 122222 2233334688999999986332222 1223455544
Q ss_pred CCcEEEEEeccCCCCc
Q 029158 132 QTKYQVVLTKTDTVFP 147 (198)
Q Consensus 132 ~~p~iiv~nK~Dl~~~ 147 (198)
+ ++|+||+|+.+.
T Consensus 153 D---~IvlnK~Dl~~~ 165 (318)
T PRK11537 153 D---RILLTKTDVAGE 165 (318)
T ss_pred C---EEEEeccccCCH
Confidence 4 999999999974
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.83 E-value=1.1e-07 Score=75.40 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc-----CccceeecCCCC-----------ce-eEEEEEE-------------------
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTR-----QWGVVRTSDKPG-----------LT-QTINFFK------------------- 64 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~-----~~~~~~~~~~~~-----------~t-~~~~~~~------------------- 64 (198)
...|+++|++|+||||++..|.. ...+..+..... .. ..+.++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999998862 112222222110 00 0011111
Q ss_pred -eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccC
Q 029158 65 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 143 (198)
Q Consensus 65 -~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 143 (198)
.+.++.|+||||.... + .....+ +..+. ....++.+++|+|+..+ .......+.+.+.-.+.-+|+||.|
T Consensus 180 ~~~~DvViIDTaGr~~~---d--~~lm~E-l~~i~-~~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQ---E--DSLFEE-MLQVA-EAIQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred hCCCCEEEEECCCCCcc---h--HHHHHH-HHHHh-hhcCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECcc
Confidence 1468999999995321 1 111122 22222 22346789999999754 2223344444443346678999999
Q ss_pred CCCc
Q 029158 144 TVFP 147 (198)
Q Consensus 144 l~~~ 147 (198)
....
T Consensus 251 ~~ar 254 (429)
T TIGR01425 251 GHAK 254 (429)
T ss_pred CCCC
Confidence 8653
No 373
>PRK00098 GTPase RsgA; Reviewed
Probab=98.82 E-value=2.4e-08 Score=76.43 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=57.1
Q ss_pred cccceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
..+|.+++|+|+.++..... .+++..+...++|+++|+||+|+....+. .....+.... .+.+++++||+++
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~---~g~~v~~vSA~~g 152 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEE---ARELLALYRA---IGYDVLELSAKEG 152 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHH---HHHHHHHHHH---CCCeEEEEeCCCC
Confidence 45899999999976322222 34455566668999999999999743221 1122222221 2468999999999
Q ss_pred CChHHHHHHHHH
Q 029158 180 AGIRSLRTVLSK 191 (198)
Q Consensus 180 ~gi~~l~~~i~~ 191 (198)
+|+++|++++..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999998753
No 374
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.81 E-value=5.7e-08 Score=75.56 Aligned_cols=128 Identities=18% Similarity=0.282 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCCce-----------------eEE-E-----------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLT-----------------QTI-N----------------- 61 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t-----------------~~~-~----------------- 61 (198)
..|..++.|.-|||||||+++++... +++...+..+.. ... .
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 35678999999999999999998541 223332222200 000 0
Q ss_pred ---E--EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH----HhcccccceEEEEEeCCCCCCcC------------
Q 029158 62 ---F--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY----VSTRVSLKRVCLLIDTKWGVKPR------------ 120 (198)
Q Consensus 62 ---~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~vi~v~d~~~~~~~~------------ 120 (198)
. ........+++|.|+.+. ..+...+ +......|.++.|+|+.......
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P----------~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~ 152 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALP----------KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQR 152 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCH----------HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhc
Confidence 0 011357889999998653 2222222 22233578899999997532100
Q ss_pred ------------cHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158 121 ------------DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 160 (198)
Q Consensus 121 ------------~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 160 (198)
...+..++.. .-++++||+|+.+..+++...+.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~Qi~~---AD~IvlnK~Dl~~~~~l~~~~~~l~~~ 201 (341)
T TIGR02475 153 AADDNLDHETPLEELFEDQLAC---ADLVILNKADLLDAAGLARVRAEIAAE 201 (341)
T ss_pred cccccccccchHHHHHHHHHHh---CCEEEEeccccCCHHHHHHHHHHHHHh
Confidence 0112344443 349999999999988776666666553
No 375
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.81 E-value=2.8e-07 Score=69.53 Aligned_cols=58 Identities=17% Similarity=0.059 Sum_probs=42.3
Q ss_pred CCcEEEEEeccCCCCcH---------HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 132 QTKYQVVLTKTDTVFPI---------DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 132 ~~p~iiv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++|+++|+||||.++-- ..+.+...++..+... +...|++|+|..-|++-|..+|...
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~---GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRY---GAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHc---CceeEEeecccccchHHHHHHHHHH
Confidence 45899999999996432 2233344444444433 6889999999999999999998764
No 376
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.80 E-value=3.7e-08 Score=76.00 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC--------cCcHH---HHHHHHh----
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDHE---LISLMER---- 130 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~--------~~~~~---~~~~~~~---- 130 (198)
+..+.++|++|... .+.. +..++. .+++|+||+|.++--. ..-.+ .++.+-.
T Consensus 160 ~~~~~~~DvgGq~~------~R~k----W~~~f~---~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 160 NLKFRMFDVGGQRS------ERKK----WIHCFE---DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ceEEEEECCCCCcc------cchh----HHHHhC---CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 45788999999522 2222 234444 3899999999986211 01111 2222222
Q ss_pred hCCcEEEEEeccCCCC------------------cHHHHHHHHHHHHHHHhccC---CCCCcEEeccCCCCChHHHHHHH
Q 029158 131 SQTKYQVVLTKTDTVF------------------PIDVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRTVL 189 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~---~~~~v~~~Sa~~~~gi~~l~~~i 189 (198)
.++|+++++||.|+.. +.+.+...+.+...+..... ..+-+..++|.+-+++..+++.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 2689999999999632 12445666666666655432 23456778999999999999888
Q ss_pred HHhh
Q 029158 190 SKIA 193 (198)
Q Consensus 190 ~~~~ 193 (198)
.+.+
T Consensus 307 ~~~i 310 (317)
T cd00066 307 KDII 310 (317)
T ss_pred HHHH
Confidence 7754
No 377
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.79 E-value=1e-08 Score=81.22 Aligned_cols=58 Identities=40% Similarity=0.629 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
...|.+||.||+||||+||+|.+. +...++..||-|+-.+.......+.+.|+||+-.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVf 371 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVF 371 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCccc
Confidence 578999999999999999999999 6777999999999888888889999999999754
No 378
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.78 E-value=5.9e-08 Score=86.52 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceee-cC----CCCceeEEEEEEeCCceEEEeCCCCcccc--chhHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SD----KPGLTQTINFFKLGTKLCLVDLPGYGFAY--AKEEVKDAWEE 92 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~-~~----~~~~t~~~~~~~~~~~~~iiDtpG~~~~~--~~~~~~~~~~~ 92 (198)
..|-.+++|++|+||||++...--.-..... +. ..+.|..+.++ ...+.+++||+|---.. ........|..
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~ww-f~~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWW-FTDEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceE-ecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence 4588999999999999999987222111110 00 11223333332 23567899999932211 11223456777
Q ss_pred HHHHHHhcc--cccceEEEEEeCCCCCCcCcH---H----H---HHHHHh---hCCcEEEEEeccCCCCc
Q 029158 93 LVKEYVSTR--VSLKRVCLLIDTKWGVKPRDH---E----L---ISLMER---SQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 93 ~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~---~----~---~~~~~~---~~~p~iiv~nK~Dl~~~ 147 (198)
++....+.. .-.++||+++|..+-+..... . + +..+.. ...||.+|+||||+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 776665553 458999999999863322221 1 1 122221 26899999999999864
No 379
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.7e-09 Score=83.83 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc----------------cceeecCCCCceeE---EEEEEeCCceEEEeCCCCccc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW----------------GVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~ 80 (198)
...+|.++..-.+||||...+++.-. .+.......+.|.+ +++...+.++.++||||+-+-
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 45689999999999999999887421 00011112334433 345566899999999997441
Q ss_pred cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
. .+..+-.+..|+++.|+|++.|...+..-++.+..+.+.|-++.+||+|....
T Consensus 116 ~-------------leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 R-------------LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred E-------------EEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh
Confidence 1 01111122379999999999999999999999999999999999999998754
No 380
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=9.4e-09 Score=82.87 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-cceeecC---------------CCCceeE---EEEEEeCCceEEEeCCCCcc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSD---------------KPGLTQT---INFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~~~~---------------~~~~t~~---~~~~~~~~~~~iiDtpG~~~ 79 (198)
+...+|.+.-.-.+||||+-++++.-. .....+. ..++|.+ ..+...+.++.+|||||+.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 456788888889999999999887421 0011111 1122322 12333478999999999733
Q ss_pred ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH
Q 029158 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 150 (198)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 150 (198)
+.-+..+.+...|++++|+|+..|...+...+.+++.+.++|-|..+||+|.......
T Consensus 117 -------------FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 117 -------------FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPF 174 (721)
T ss_pred -------------EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChH
Confidence 2223444555689999999999999999999999999999999999999999876543
No 381
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.76 E-value=4e-08 Score=74.82 Aligned_cols=83 Identities=23% Similarity=0.298 Sum_probs=57.7
Q ss_pred cccceEEEEEeCCCCC-CcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 102 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
..+|.+++|+|+.++. .... ..++..+...++|+++|+||+|+.+..+.... ..... ..+.+++++||+++
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~----~~~~~---~~g~~v~~vSA~~g 149 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELE----LVEAL---ALGYPVLAVSAKTG 149 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHH----HHHHH---hCCCeEEEEECCCC
Confidence 3489999999998754 2222 23455566668999999999999765321111 11111 12478999999999
Q ss_pred CChHHHHHHHHH
Q 029158 180 AGIRSLRTVLSK 191 (198)
Q Consensus 180 ~gi~~l~~~i~~ 191 (198)
.|+++|..++..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988764
No 382
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.73 E-value=3.7e-07 Score=68.13 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=84.1
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCc---cceeecCCCCceeEE---------------------------EEE--
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTI---------------------------NFF-- 63 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~---------------------------~~~-- 63 (198)
.+..+.|.-.+.|.-|||||||+|+++..+ +++..-+..+-..++ ++.
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~ 131 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN 131 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecch
Confidence 355677888999999999999999999643 444444443321110 010
Q ss_pred -----------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc--------HHH
Q 029158 64 -----------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--------HEL 124 (198)
Q Consensus 64 -----------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--------~~~ 124 (198)
.......+++|.|+.....-. . -.+..+-+...-..|+|+-|+|+.+.....+ .+.
T Consensus 132 gvraie~lvqkkGkfD~IllETTGlAnPaPia--~---~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA 206 (391)
T KOG2743|consen 132 GVRAIENLVQKKGKFDHILLETTGLANPAPIA--S---MFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEA 206 (391)
T ss_pred HHHHHHHHHhcCCCcceEEEeccCCCCcHHHH--H---HHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHH
Confidence 112357899999986542111 1 1222333344445899999999987322111 112
Q ss_pred HHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 029158 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 162 (198)
Q Consensus 125 ~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 162 (198)
..++. ..--+++||.|++..+++....+.+.+...
T Consensus 207 ~~QiA---~AD~II~NKtDli~~e~~~~l~q~I~~INs 241 (391)
T KOG2743|consen 207 TRQIA---LADRIIMNKTDLVSEEEVKKLRQRIRSINS 241 (391)
T ss_pred HHHHh---hhheeeeccccccCHHHHHHHHHHHHHhhh
Confidence 22222 333689999999999888777777766544
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.68 E-value=3.5e-07 Score=71.93 Aligned_cols=94 Identities=14% Similarity=0.013 Sum_probs=57.8
Q ss_pred Hhcccccc-eEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 98 VSTRVSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 98 ~~~~~~~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
+......| .|++|+|+.+. .......+.... .+.|+++|+||+|+..... .++..+.++............++.+|
T Consensus 63 l~~i~~~~~lIv~VVD~~D~-~~s~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vS 140 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDF-NGSWIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLIS 140 (365)
T ss_pred HHhhcccCcEEEEEEECccC-CCchhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEE
Confidence 33333344 89999999763 322222233222 2689999999999975321 22222333333322211123689999
Q ss_pred cCCCCChHHHHHHHHHhh
Q 029158 176 SKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~~ 193 (198)
|+++.|++++++.|.+..
T Consensus 141 Ak~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 141 AQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999997764
No 384
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.68 E-value=1.1e-07 Score=68.34 Aligned_cols=117 Identities=24% Similarity=0.319 Sum_probs=61.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-----cceeecCC--C-Cce---------eEEEEEE--------------------e
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK--P-GLT---------QTINFFK--------------------L 65 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~--~-~~t---------~~~~~~~--------------------~ 65 (198)
.++++|++|+||||.+-.|.... ++..++-. . +.. -.+.++. .
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 58999999999999998877431 11111111 0 000 0011111 1
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
+.++.++||||..... ....+. +..++... ..+-+++|++++.+ ..+..........-.+-=+++||.|..
T Consensus 83 ~~D~vlIDT~Gr~~~d--~~~~~e----l~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~~lIlTKlDet 153 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRD--EELLEE----LKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAFGIDGLILTKLDET 153 (196)
T ss_dssp TSSEEEEEE-SSSSTH--HHHHHH----HHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTCEEEEESTTSS
T ss_pred CCCEEEEecCCcchhh--HHHHHH----HHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcccCceEEEEeecCC
Confidence 3579999999964321 111112 22233322 36789999999863 233332222222222345779999997
Q ss_pred CcH
Q 029158 146 FPI 148 (198)
Q Consensus 146 ~~~ 148 (198)
...
T Consensus 154 ~~~ 156 (196)
T PF00448_consen 154 ARL 156 (196)
T ss_dssp STT
T ss_pred CCc
Confidence 643
No 385
>PRK12288 GTPase RsgA; Reviewed
Probab=98.66 E-value=3.1e-07 Score=71.53 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=57.8
Q ss_pred cccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 180 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~ 180 (198)
.++|.+++|.+....+.... ..++..+...++|.++|+||+|+.+..+.... ....+.+. ..+.+++++||++++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~-~~~~~~y~---~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFV-NEQLDIYR---NIGYRVLMVSSHTGE 194 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHH-HHHHHHHH---hCCCeEEEEeCCCCc
Confidence 45888888888754333222 22344455567999999999999865432221 12222222 224789999999999
Q ss_pred ChHHHHHHHHHh
Q 029158 181 GIRSLRTVLSKI 192 (198)
Q Consensus 181 gi~~l~~~i~~~ 192 (198)
|+++|+++|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998754
No 386
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.63 E-value=2.4e-08 Score=74.73 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=49.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC----ccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~ 80 (198)
.+..+.+.++|.||+|||||+|++... .+.+.++.+++.|+.+.. ......+.++||||+.-.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 346789999999999999999987642 256788999999988652 223677999999997654
No 387
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.62 E-value=1.6e-09 Score=74.86 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=95.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee---E---EEEEE-eCCceEEEeCCCCccccchhHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---T---INFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~---~---~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
.+..+++++|.-|+|||+++.+..... +...+..|.. . .++.. ...++++||..|. +++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~n---fs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQ----------erfg 89 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQN---FSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQ----------ERFG 89 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHH---HHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhh----------hhhc
Confidence 356789999999999999999988652 1111111110 0 11111 1256889999994 2334
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-----h--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----S--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 163 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-----~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 163 (198)
.+.+-|+.. +.+.++|+|.++...... ..+.+.+.. . ..|+++..||||....... +....+.+....
T Consensus 90 ~mtrVyyke---a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~ke 165 (229)
T KOG4423|consen 90 NMTRVYYKE---AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKE 165 (229)
T ss_pred ceEEEEecC---CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhc
Confidence 444445444 778888999887544433 233333321 1 3678999999998654321 111222222222
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 164 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
......+++|+|..-+++|.-+.+.+..
T Consensus 166 --ngf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 166 --NGFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred --cCccceeeeccccccChhHHHHHHHHHH
Confidence 2256799999999999999998887753
No 388
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.60 E-value=3.3e-08 Score=76.18 Aligned_cols=60 Identities=33% Similarity=0.518 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~ 80 (198)
...+|.++|.|++||||+||+|... ....+++.++.|+..+.-+.+.++.++|.||+...
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPP 310 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceeec
Confidence 4568999999999999999999998 67889999999999998899999999999997543
No 389
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.60 E-value=2.7e-07 Score=65.56 Aligned_cols=125 Identities=13% Similarity=0.162 Sum_probs=68.8
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHH------HHHHHHhhCCcEEEEEe
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE------LISLMERSQTKYQVVLT 140 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~------~~~~~~~~~~p~iiv~n 140 (198)
..+.++|+||..+-+..-. ....+++..-+...++ .++|++|+.- +....+. .+...-...+|.|=|++
T Consensus 98 ddylifDcPGQIELytH~p---Vm~~iv~hl~~~~F~~-c~Vylldsqf-~vD~~KfiSG~lsAlsAMi~lE~P~INvls 172 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLP---VMPQIVEHLKQWNFNV-CVVYLLDSQF-LVDSTKFISGCLSALSAMISLEVPHINVLS 172 (273)
T ss_pred CCEEEEeCCCeeEEeecCh---hHHHHHHHHhcccCce-eEEEEeccch-hhhHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 4789999999766332111 1133333333322122 3778888753 1222221 12222234799999999
Q ss_pred ccCCCCcHHHHHHH-----------------------HHHHHHHHh-cc-CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 141 KTDTVFPIDVARRA-----------------------MQIEESLKA-NN-SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 141 K~Dl~~~~~~~~~~-----------------------~~~~~~~~~-~~-~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
|+|+......++.. ..+.+.... .. ..-+.++|+.+.+.+.++.++..|-...++
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy 252 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQY 252 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHh
Confidence 99998763211110 011111111 10 113678899999999999999988877765
Q ss_pred c
Q 029158 196 A 196 (198)
Q Consensus 196 ~ 196 (198)
.
T Consensus 253 ~ 253 (273)
T KOG1534|consen 253 G 253 (273)
T ss_pred c
Confidence 3
No 390
>PRK01889 GTPase RsgA; Reviewed
Probab=98.58 E-value=5e-07 Score=70.83 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=59.9
Q ss_pred cccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 180 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~ 180 (198)
.++|.+++|+++..++.... ..++..+...+++.++|+||+||.+..+ ...+.+... ..+.+++++|++++.
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~~~~~~~-----~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKIAEVEAL-----APGVPVLAVSALDGE 183 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHHHHHHHh-----CCCCcEEEEECCCCc
Confidence 45899999999975544433 3456666677899999999999986421 222333222 336899999999999
Q ss_pred ChHHHHHHHHH
Q 029158 181 GIRSLRTVLSK 191 (198)
Q Consensus 181 gi~~l~~~i~~ 191 (198)
|+++|.+++..
T Consensus 184 gl~~L~~~L~~ 194 (356)
T PRK01889 184 GLDVLAAWLSG 194 (356)
T ss_pred cHHHHHHHhhc
Confidence 99999999853
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.58 E-value=2.6e-07 Score=72.33 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....++++|++|+||||++..|...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998753
No 392
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.55 E-value=8.6e-07 Score=62.41 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=44.0
Q ss_pred ceEEEEEeCCCCCCcCcHHHHHH--HHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158 105 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 160 (198)
Q Consensus 105 d~vi~v~d~~~~~~~~~~~~~~~--~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 160 (198)
|++++|+|+..++...+.++.+. +...+.|+|+|+||+|+.++....++.+.+++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 78999999998877777777777 444579999999999998877666666665543
No 393
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=1.3e-06 Score=76.69 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC----ceeEEEEEEeCCceEEEeCCCCcccc--chhHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG----LTQTINFFKLGTKLCLVDLPGYGFAY--AKEEVKDAWEEL 93 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~iiDtpG~~~~~--~~~~~~~~~~~~ 93 (198)
..|-.+++|++|+||||++..-.-+..+.......+ -|+... ......-++|||.|---.. ........|..+
T Consensus 124 eLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred cCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHH
Confidence 467889999999999999887654321111111111 133333 2335668999999932211 223345556655
Q ss_pred HHHHHh--cccccceEEEEEeCCCCCCcCcHHH---H-------HHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158 94 VKEYVS--TRVSLKRVCLLIDTKWGVKPRDHEL---I-------SLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIE 158 (198)
Q Consensus 94 ~~~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~---~-------~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 158 (198)
+.-... ...-.++|++.+|..+-......+- . +.+.. ...|+++++||.|+...- ++....+.
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF--~efF~~l~ 280 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF--EEFFGSLN 280 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH--HHHHhccC
Confidence 443333 3345899999999877333222111 1 22222 268999999999998743 22222222
Q ss_pred -HHHHhccCCCCCcEEeccCCCCC
Q 029158 159 -ESLKANNSLVQPVMMVSSKSGAG 181 (198)
Q Consensus 159 -~~~~~~~~~~~~v~~~Sa~~~~g 181 (198)
+..... ....|+.++....+
T Consensus 281 ~~~r~qv---wG~tf~~~~~~~~~ 301 (1188)
T COG3523 281 KEEREQV---WGVTFPLDARRNAN 301 (1188)
T ss_pred HHHHhhh---ceeccccccccccc
Confidence 111111 23466777776633
No 394
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.52 E-value=3.3e-06 Score=68.12 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=41.4
Q ss_pred CCcEEEEEeccCCCCcH---------HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 132 QTKYQVVLTKTDTVFPI---------DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 132 ~~p~iiv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++|++||++|+|....- ..+-+.+.++..+..+ +...|++|++...+++-|+.+|...+
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~y---GAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKY---GASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhc---CCeEEEeeccccccHHHHHHHHHHHh
Confidence 46999999999986421 1222333344444333 68899999999999999999887654
No 395
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.50 E-value=1.5e-06 Score=59.70 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029158 24 IAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~ 43 (198)
+.++|+.|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998774
No 396
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.49 E-value=1.9e-06 Score=67.51 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeec--------------C----CCCceeE-------EE--EE-EeCCceEEE
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS--------------D----KPGLTQT-------IN--FF-KLGTKLCLV 72 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~--------------~----~~~~t~~-------~~--~~-~~~~~~~ii 72 (198)
-.=+.+|||..+||||||.++...-.++... + ..-||.+ .. +. ....+++++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 3458999999999999999988431000000 0 0112222 11 11 124689999
Q ss_pred eCCCCcc-cc------------chhHHHHHHHHHHHHHHhccc-----ccceEEEEEeCCCC-CC-----cCcHHHHHHH
Q 029158 73 DLPGYGF-AY------------AKEEVKDAWEELVKEYVSTRV-----SLKRVCLLIDTKWG-VK-----PRDHELISLM 128 (198)
Q Consensus 73 DtpG~~~-~~------------~~~~~~~~~~~~~~~~~~~~~-----~~d~vi~v~d~~~~-~~-----~~~~~~~~~~ 128 (198)
|+-|+.= .. ..+|....+..-.+.-+...+ .--++++..|.+-+ ++ +.+.+..+.|
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9998611 00 111111111111111111111 12245555666542 12 2335577888
Q ss_pred HhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC--CCChHHHHHHHH
Q 029158 129 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS--GAGIRSLRTVLS 190 (198)
Q Consensus 129 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~--~~gi~~l~~~i~ 190 (198)
...++|+++++|=.+-.+++. .+..+.+.+.. ++|++++++-. .+.+..+++.+.
T Consensus 177 k~igKPFvillNs~~P~s~et-~~L~~eL~ekY------~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEIGKPFVILLNSTKPYSEET-QELAEELEEKY------DVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHhCCCEEEEEeCCCCCCHHH-HHHHHHHHHHh------CCcEEEeehHHcCHHHHHHHHHHHH
Confidence 888999999999988766543 33444444443 48999998854 445555555443
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.47 E-value=1.9e-06 Score=69.03 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCC--Cce----------eEEEEEE------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKP--GLT----------QTINFFK------------------ 64 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~--~~t----------~~~~~~~------------------ 64 (198)
....|+++|++|+||||++..|... ..+..+.... ... ....++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 3557999999999999999887632 1111111100 000 0000000
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH--hcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCc-EEEEE
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTK-YQVVL 139 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p-~iiv~ 139 (198)
....+.++||||.... + ..++.++. .....+|.+++|+|+..+ .+.+..++.. ..+ .-+|+
T Consensus 174 ~~~DvVIIDTAGr~~~---d------~~lm~El~~l~~~~~pdevlLVvda~~g-----q~av~~a~~F~~~l~i~gvIl 239 (437)
T PRK00771 174 KKADVIIVDTAGRHAL---E------EDLIEEMKEIKEAVKPDEVLLVIDATIG-----QQAKNQAKAFHEAVGIGGIII 239 (437)
T ss_pred hcCCEEEEECCCcccc---h------HHHHHHHHHHHHHhcccceeEEEecccc-----HHHHHHHHHHHhcCCCCEEEE
Confidence 1247999999995331 1 11121111 112247889999999764 2333333332 233 35789
Q ss_pred eccCCCCcH
Q 029158 140 TKTDTVFPI 148 (198)
Q Consensus 140 nK~Dl~~~~ 148 (198)
||.|.....
T Consensus 240 TKlD~~a~~ 248 (437)
T PRK00771 240 TKLDGTAKG 248 (437)
T ss_pred ecccCCCcc
Confidence 999986543
No 398
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.43 E-value=1.2e-05 Score=55.04 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC---CCceeEEEEEEeCCceEEEeCC-CCccc-----cchhH----
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---PGLTQTINFFKLGTKLCLVDLP-GYGFA-----YAKEE---- 85 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~iiDtp-G~~~~-----~~~~~---- 85 (198)
....+|++.|+||+||||++..+...- ...++ ...|..+........|.++|+. |=... .....
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L---~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL---REKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH---HhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 356789999999999999999887431 00101 1122222222233557777776 21000 00000
Q ss_pred --HHHHHHHHHHHHHh-cccccceEEEEEeCCCCCCc---CcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH
Q 029158 86 --VKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKP---RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 159 (198)
Q Consensus 86 --~~~~~~~~~~~~~~-~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 159 (198)
.-+.+++.....++ +...+|+++ +|--....- ...+.++.+...+.|+|.++.+-+.-+ ..+.+..
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P------~v~~ik~ 151 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHP------LVQRIKK 151 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCCh------HHHHhhh
Confidence 11222322222222 223356554 554332222 234445555566899999999886521 1122222
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
. +.-+++ .+.+|-+.+...|...+..
T Consensus 152 ~-------~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 152 L-------GGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred c-------CCEEEE---EccchhhHHHHHHHHHhcc
Confidence 1 111222 5666667888887776653
No 399
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.43 E-value=6.1e-06 Score=64.60 Aligned_cols=117 Identities=22% Similarity=0.252 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-------cceeecC--C-CCce-----------eEEEEEE------------eCC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW-------GVVRTSD--K-PGLT-----------QTINFFK------------LGT 67 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~-------~~~~~~~--~-~~~t-----------~~~~~~~------------~~~ 67 (198)
...|++|||+|+||||-+-.|.... +++.++- | .+-- .+..... .+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 6679999999999999888776542 1111110 0 0000 0011111 135
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcE-EEEEeccCCC
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKY-QVVLTKTDTV 145 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~-iiv~nK~Dl~ 145 (198)
++.++||.|..... ...-.-+..|+... ...-+++|++++. ...+ .++++.... .|+ =+++||.|..
T Consensus 283 d~ILVDTaGrs~~D------~~~i~el~~~~~~~-~~i~~~Lvlsat~--K~~dlkei~~~f~~--~~i~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYD------KEKIEELKELIDVS-HSIEVYLVLSATT--KYEDLKEIIKQFSL--FPIDGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccC------HHHHHHHHHHHhcc-ccceEEEEEecCc--chHHHHHHHHHhcc--CCcceeEEEccccc
Confidence 89999999964421 11123344555555 3445777888864 3333 233444443 333 3678999987
Q ss_pred CcH
Q 029158 146 FPI 148 (198)
Q Consensus 146 ~~~ 148 (198)
..-
T Consensus 352 ~s~ 354 (407)
T COG1419 352 TSL 354 (407)
T ss_pred Cch
Confidence 643
No 400
>PRK10867 signal recognition particle protein; Provisional
Probab=98.42 E-value=3.1e-06 Score=67.70 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=18.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~ 42 (198)
....|+++|++|+||||++..|.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 34578999999999999776665
No 401
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=6.2e-06 Score=67.03 Aligned_cols=138 Identities=18% Similarity=0.214 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-------ccceeecCCCC-c-----------eeEEEEEE--------------eC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ-------WGVVRTSDKPG-L-----------TQTINFFK--------------LG 66 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~-------~~~~~~~~~~~-~-----------t~~~~~~~--------------~~ 66 (198)
....|+++|++|+||||++..|... ..+..+..... . .....+.. .+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3567999999999999999887742 11222211110 0 00001111 14
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 146 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 146 (198)
.++.||||||.... +. ..... +..+.... ....++|+++....... .+.++.+.. ..+.-+|+||+|...
T Consensus 429 ~DLVLIDTaG~s~~---D~--~l~ee-L~~L~aa~--~~a~lLVLpAtss~~Dl-~eii~~f~~-~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQR---DR--ALAAQ-LNWLRAAR--QVTSLLVLPANAHFSDL-DEVVRRFAH-AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchh---hH--HHHHH-HHHHHHhh--cCCcEEEEECCCChhHH-HHHHHHHHh-hCCeEEEEecCcCcc
Confidence 68999999997432 11 11111 11111111 23467788887531111 223333333 246779999999865
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 147 PIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
.. ......+... ..|+.+++.
T Consensus 499 ~l--G~aLsv~~~~-------~LPI~yvt~ 519 (559)
T PRK12727 499 RF--GSALSVVVDH-------QMPITWVTD 519 (559)
T ss_pred ch--hHHHHHHHHh-------CCCEEEEeC
Confidence 32 2222222221 467777753
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.38 E-value=3.8e-06 Score=59.22 Aligned_cols=73 Identities=22% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHH-hhCCcEEEEEeccCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-RSQTKYQVVLTKTDT 144 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl 144 (198)
+.++.++||||.... + ...... +..+.. ....|.+++|+|+... ....+...... ..+ ..-+|+||.|.
T Consensus 82 ~~d~viiDt~g~~~~---~--~~~l~~-l~~l~~-~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQI---D--ENLMEE-LKKIKR-VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchh---h--HHHHHH-HHHHHh-hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcC
Confidence 456899999996321 0 011111 122222 2337899999998642 22233333332 223 35678899998
Q ss_pred CCcH
Q 029158 145 VFPI 148 (198)
Q Consensus 145 ~~~~ 148 (198)
....
T Consensus 152 ~~~~ 155 (173)
T cd03115 152 DARG 155 (173)
T ss_pred CCCc
Confidence 7643
No 403
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=3.3e-06 Score=66.24 Aligned_cols=118 Identities=22% Similarity=0.315 Sum_probs=63.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC---ce---------eEEEEE---------------E--eC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG---LT---------QTINFF---------------K--LG 66 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~---~t---------~~~~~~---------------~--~~ 66 (198)
...|+++|++|+||||++..|.... .+......+. .. ..+.+. . .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 4689999999999999999987421 1221111110 00 000000 0 13
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCC
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
..+.+|||||-.... .....++ ..++.. ...+.+++|+|++.. ..+ .+.++..... -.-=+++||.|..
T Consensus 321 ~DvVLIDTaGRs~kd-----~~lm~EL-~~~lk~-~~PdevlLVLsATtk--~~d~~~i~~~F~~~-~idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRA-----SETVEEM-IETMGQ-VEPDYICLTLSASMK--SKDMIEIITNFKDI-HIDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcC-----HHHHHHH-HHHHhh-cCCCeEEEEECCccC--hHHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence 589999999963311 1112222 223322 235678899998642 222 2333333321 2346899999987
Q ss_pred CcH
Q 029158 146 FPI 148 (198)
Q Consensus 146 ~~~ 148 (198)
...
T Consensus 391 ~k~ 393 (436)
T PRK11889 391 ASS 393 (436)
T ss_pred CCc
Confidence 643
No 404
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.36 E-value=3.5e-06 Score=57.26 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=66.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158 25 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 102 (198)
Q Consensus 25 ~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
+.-|..|+||||+...+.... .. .+....-.+ .+....++++.++|||+..+. .....+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~--~~-~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~~------------~~~~~l~--- 65 (139)
T cd02038 4 VTSGKGGVGKTNISANLALAL--AK-LGKRVLLLDADLGLANLDYDYIIIDTGAGISD------------NVLDFFL--- 65 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHH--HH-CCCcEEEEECCCCCCCCCCCEEEEECCCCCCH------------HHHHHHH---
Confidence 455779999999977766431 10 000000001 011111378999999974221 1112222
Q ss_pred ccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 103 SLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
.+|.++++++.+..........++.+... ..++.+|+|+++.. .+.++..+.+.+.+........+
T Consensus 66 ~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r~~~~~l~ 133 (139)
T cd02038 66 AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP--KEGKKVFKRLSNVSNRFLGLSLD 133 (139)
T ss_pred hCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHHHhCCChh
Confidence 28999999998642222223445555432 46788999999743 33344455555544443333333
No 405
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.36 E-value=1.6e-07 Score=72.53 Aligned_cols=60 Identities=32% Similarity=0.550 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 78 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~ 78 (198)
+.....|.++|.|++||||+||.|-.. .+..+.+.++-|.-.++...-.++-+||+||+-
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvV 363 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVV 363 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCcc
Confidence 445678999999999999999999887 788899999988877766666789999999973
No 406
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.36 E-value=1.5e-05 Score=61.62 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=69.6
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC--CCCcCc---H------HHHHHHHhh--
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRD---H------ELISLMERS-- 131 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~--~~~~~~---~------~~~~~~~~~-- 131 (198)
.+.++.++|.+|.. ..+..|- ..+.. +++|+|++..++ .....+ . .+.+.+-..
T Consensus 193 k~~~f~~~DvGGQR------seRrKWi----hcFe~---v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQR------SERKKWI----HCFED---VTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred CCCceEEEeCCCcH------HHhhhHH----HhhcC---CCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 35689999999942 1122222 23333 899999998876 111111 1 222333222
Q ss_pred --CCcEEEEEeccCCCCc-----------------HHHHHHHHHHHHHHHhccCCC---CCcEEeccCCCCChHHHHHHH
Q 029158 132 --QTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANNSLV---QPVMMVSSKSGAGIRSLRTVL 189 (198)
Q Consensus 132 --~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~Sa~~~~gi~~l~~~i 189 (198)
+.++|+.+||.|+... .+.++....++..+....... .=+..+.|.+-.+++.+++..
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 5899999999998542 233455566665555443322 224556888889999998887
Q ss_pred HHhh
Q 029158 190 SKIA 193 (198)
Q Consensus 190 ~~~~ 193 (198)
.+.+
T Consensus 340 ~d~I 343 (354)
T KOG0082|consen 340 TDTI 343 (354)
T ss_pred HHHH
Confidence 7654
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.35 E-value=8.4e-06 Score=65.20 Aligned_cols=73 Identities=23% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
++++.++||||.... ... ...+ +..+.. ...+|.+++|+|+..+ .............-...=+|+||.|..
T Consensus 182 ~~DvVIIDTaGr~~~--d~~---l~~e-L~~i~~-~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI--DEE---LMEE-LAAIKE-ILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCcccc--CHH---HHHH-HHHHHH-hhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 357999999995331 011 1111 112211 2247889999998742 222223333332112235779999965
Q ss_pred Cc
Q 029158 146 FP 147 (198)
Q Consensus 146 ~~ 147 (198)
..
T Consensus 253 ~~ 254 (428)
T TIGR00959 253 AR 254 (428)
T ss_pred cc
Confidence 43
No 408
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.32 E-value=1.4e-06 Score=62.99 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=31.9
Q ss_pred cccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccCCC
Q 029158 102 VSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV 145 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~ 145 (198)
..+|.++.|+|++...-....++-+..++.+ .++.+|+||+|..
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4589999999997532233344455556667 8999999999975
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.30 E-value=5.5e-06 Score=65.93 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
....++++|++|+||||++..|.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999997765
No 410
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.30 E-value=6.8e-06 Score=66.55 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-----eE-EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-----~~-~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
..+..++|+.++|||.+++++++. .+.. +..+++ .. .........+.+-|.+-... ...
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr-~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~------------~~l 489 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGR-SMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQ------------DFL 489 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhcc-cccc--ccccCCCCceeeeeeeeccccceEEEeecCcccc------------ccc
Confidence 567899999999999999999997 3333 221111 11 11222233455555543210 000
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHH----HhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
-.....||++++++|++.. .......... ...+.|+++|++|+|+....+.- ..+-.+... ..+ -.+
T Consensus 490 ---~~ke~~cDv~~~~YDsS~p--~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~--~iqpde~~~-~~~-i~~ 560 (625)
T KOG1707|consen 490 ---TSKEAACDVACLVYDSSNP--RSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRY--SIQPDEFCR-QLG-LPP 560 (625)
T ss_pred ---cCccceeeeEEEecccCCc--hHHHHHHHHHHHhhhccCCceEEEeeccccchhhhcc--CCChHHHHH-hcC-CCC
Confidence 0111349999999999842 2221111111 12479999999999997543211 111111221 122 234
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
-+.+|+++... .+++..|...+.
T Consensus 561 P~~~S~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 561 PIHISSKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred CeeeccCCCCC-chHHHHHHHhhh
Confidence 55677775333 888888877654
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=5.9e-06 Score=65.47 Aligned_cols=120 Identities=19% Similarity=0.274 Sum_probs=61.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc------cceeecCCCC-c-----------eeEEEEE-------------EeCCce
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW------GVVRTSDKPG-L-----------TQTINFF-------------KLGTKL 69 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~------~~~~~~~~~~-~-----------t~~~~~~-------------~~~~~~ 69 (198)
...++++|++|+||||++..|.... .+........ + .....+. ..+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458999999999999999887431 1111111110 0 0000011 125688
Q ss_pred EEEeCCCCccccchhHHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 70 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 70 ~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
.+|||||..... .... .. +..++.... ...-+++|+|+..+.. ...+.++..... -.-=+++||.|....
T Consensus 303 VLIDTaGr~~rd--~~~l---~e-L~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~-~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRN--LEQL---ER-MQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESL-NYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccC--HHHH---HH-HHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCC-CCCEEEEEcccCCCC
Confidence 999999974321 1111 12 222332211 1346888999975311 112222222211 234688999998754
Q ss_pred H
Q 029158 148 I 148 (198)
Q Consensus 148 ~ 148 (198)
.
T Consensus 375 ~ 375 (432)
T PRK12724 375 L 375 (432)
T ss_pred c
Confidence 3
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.27 E-value=1.4e-05 Score=64.18 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-------ccceeecCCCCc--------------eeEEEE------------EEeCC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ-------WGVVRTSDKPGL--------------TQTINF------------FKLGT 67 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~-------~~~~~~~~~~~~--------------t~~~~~------------~~~~~ 67 (198)
...++++|++|+||||++..|... ..+..+...+.- ..+... ...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 347999999999999988776532 122222221100 000000 00146
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCCC
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVF 146 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~ 146 (198)
.+.+|||||..... ... -..+..++.......-+++|+++.. ...+ .+++......+ +--+++||+|...
T Consensus 301 DlVlIDt~G~~~~d--~~~----~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 301 DVILIDTAGRSQRD--KRL----IEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRLP-LDGLIFTKLDETS 371 (424)
T ss_pred CEEEEeCCCCCCCC--HHH----HHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCCC-CCEEEEecccccc
Confidence 89999999974321 111 1122233332222356778888864 2222 22333333222 2358999999865
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCCh
Q 029158 147 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182 (198)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi 182 (198)
... ...+.+.+. +.|+.+++ +|.++
T Consensus 372 ~~G--~i~~~~~~~-------~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 SLG--SILSLLIES-------GLPISYLT--NGQRV 396 (424)
T ss_pred ccc--HHHHHHHHH-------CCCEEEEe--CCCCC
Confidence 432 222222222 46777775 34443
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=7.1e-06 Score=64.17 Aligned_cols=117 Identities=16% Similarity=0.253 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCce------------eEEEEEE-----------------e
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLT------------QTINFFK-----------------L 65 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t------------~~~~~~~-----------------~ 65 (198)
....++++|++|+||||++..|... ..+..+...+.-. .+..+.. .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 4567899999999999999988742 1122221111100 0000100 1
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-C-cEEEEEeccC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-T-KYQVVLTKTD 143 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~-p~iiv~nK~D 143 (198)
+..+.+|||||..... .+...+ +..+... ...+.+++|+++.. ...+....+..+. . .--+++||.|
T Consensus 285 ~~D~VLIDTAGr~~~d-----~~~l~E-L~~l~~~-~~p~~~~LVLsag~----~~~d~~~i~~~f~~l~i~glI~TKLD 353 (407)
T PRK12726 285 CVDHILIDTVGRNYLA-----EESVSE-ISAYTDV-VHPDLTCFTFSSGM----KSADVMTILPKLAEIPIDGFIITKMD 353 (407)
T ss_pred CCCEEEEECCCCCccC-----HHHHHH-HHHHhhc-cCCceEEEECCCcc----cHHHHHHHHHhcCcCCCCEEEEEccc
Confidence 3589999999964311 111122 2223322 23466777877642 2333444443332 2 3468899999
Q ss_pred CCCc
Q 029158 144 TVFP 147 (198)
Q Consensus 144 l~~~ 147 (198)
....
T Consensus 354 ET~~ 357 (407)
T PRK12726 354 ETTR 357 (407)
T ss_pred CCCC
Confidence 8754
No 414
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.8e-05 Score=57.61 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=79.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.|+|+++|.-.+||||+-...+..- -+...-....|..+. +...-.++.+||.||..+.....-. ....
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D-------~e~i 98 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFD-------YEMI 98 (347)
T ss_pred CceEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccC-------HHHH
Confidence 5889999999999999988776641 000000011111111 1112367999999996543211100 0112
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHH----HHHHHHHHHHHHhccCCC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDV----ARRAMQIEESLKANNSLV 168 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~ 168 (198)
++ .+.+++||+|+.....+.-..+...+.+ .++.+=+.+.|+|-.+.+.. ..+.++..+.+.......
T Consensus 99 F~---~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~ 175 (347)
T KOG3887|consen 99 FR---GVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK 175 (347)
T ss_pred Hh---ccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc
Confidence 22 2778999999965322211112222222 14567789999998876422 233344444444433323
Q ss_pred --CCcEEeccCCCCChHHHHH
Q 029158 169 --QPVMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 169 --~~v~~~Sa~~~~gi~~l~~ 187 (198)
+.+..+|-.+ ..+-|.+.
T Consensus 176 v~vsf~LTSIyD-HSIfEAFS 195 (347)
T KOG3887|consen 176 VQVSFYLTSIYD-HSIFEAFS 195 (347)
T ss_pred ceEEEEEeeecc-hHHHHHHH
Confidence 3345555554 33333333
No 415
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.22 E-value=1.3e-05 Score=62.26 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=55.9
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHH-hh-CCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-RS-QTKYQVVLTKTDTVFPIDVARRAMQIEESL 161 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (198)
..+..++......+|+|+.|+||.+++.....++=+.+. .. ++..|+|+||.|+++.+.+++++.++...+
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREG 206 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhC
Confidence 333444555555699999999999988888777766664 33 489999999999999999999999988763
No 416
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.21 E-value=2.4e-05 Score=63.36 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|+||||++..|...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999988853
No 417
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=2.1e-05 Score=62.14 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc---------cceeecCCCC---c-----------eeEEEEE------------Ee
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW---------GVVRTSDKPG---L-----------TQTINFF------------KL 65 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~---------~~~~~~~~~~---~-----------t~~~~~~------------~~ 65 (198)
...|+++|++|+||||.+..|.... .+..+..... . ..+.... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4579999999999999998876421 1111111110 0 0001000 02
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC--CcEEEEEeccC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD 143 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D 143 (198)
+..+.++||+|.... + ...+.+ +..++.......-+++|+|++.+ ...+.+.+..+. -+-=+++||.|
T Consensus 254 ~~DlVLIDTaGr~~~---~--~~~l~e-l~~~l~~~~~~~e~~LVlsat~~----~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPK---D--FMKLAE-MKELLNACGRDAEFHLAVSSTTK----TSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCcc---C--HHHHHH-HHHHHHhcCCCCeEEEEEcCCCC----HHHHHHHHHHhcCCCCCEEEEEecc
Confidence 468999999996431 1 111122 22333333222358899999764 222223344432 24568999999
Q ss_pred CCCcH
Q 029158 144 TVFPI 148 (198)
Q Consensus 144 l~~~~ 148 (198)
.....
T Consensus 324 et~~~ 328 (388)
T PRK12723 324 ETTCV 328 (388)
T ss_pred CCCcc
Confidence 87643
No 418
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.14 E-value=4.3e-06 Score=55.21 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|+++|..|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 7899999999999999999665
No 419
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=98.14 E-value=1.2e-06 Score=73.32 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=50.9
Q ss_pred CceEEEeCCCCcccc---chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEecc
Q 029158 67 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT 142 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~ 142 (198)
.+++++|+||+.... +...+...+..+...|+...... ++.|..++..+...+ ..+...+...+.+.+-|++|.
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~i--ILav~~an~d~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRI--ILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchh--hhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 478999999986632 44557778888888887774332 344445554333322 444555555567788888888
Q ss_pred CCCCc
Q 029158 143 DTVFP 147 (198)
Q Consensus 143 Dl~~~ 147 (198)
|+.+.
T Consensus 210 Dlmdk 214 (657)
T KOG0446|consen 210 DFMDK 214 (657)
T ss_pred Hhhhc
Confidence 87654
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=1.5e-05 Score=67.63 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|+||||++..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 46899999999999999988854
No 421
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.09 E-value=1.9e-05 Score=63.17 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
+++++...-...+|+|+.++||..++-.....+..++.+. .+..++++||+||.++.......+++.+. .+
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~-------ni 235 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQN-------NI 235 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhc-------Cc
Confidence 3444555556668999999999997766666666666654 36789999999999998887777776654 48
Q ss_pred CcEEeccCC
Q 029158 170 PVMMVSSKS 178 (198)
Q Consensus 170 ~v~~~Sa~~ 178 (198)
++++.||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 999999976
No 422
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.3e-05 Score=64.10 Aligned_cols=131 Identities=17% Similarity=0.274 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceee--------------cCCCCceeEEE----EEE---------------e
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTIN----FFK---------------L 65 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~t~~~~----~~~---------------~ 65 (198)
.+..++.++-....|||||-.+|.....+... ....+.|...+ ++. .
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 45677888999999999999998854211110 00111221110 110 0
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
+.-+.+||.||+-+ +-.+.-..++..|+.++|+|.-+|.--+..-++.+....++.-++++||+|..
T Consensus 97 ~FLiNLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCCccc-------------chhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 23478999999733 33455566677899999999999877777777877776677778999999975
Q ss_pred Cc---HHHHHHHHHHHHHHH
Q 029158 146 FP---IDVARRAMQIEESLK 162 (198)
Q Consensus 146 ~~---~~~~~~~~~~~~~~~ 162 (198)
-- ...++..+.+++..+
T Consensus 164 lLELq~~~EeLyqtf~R~VE 183 (842)
T KOG0469|consen 164 LLELQLSQEELYQTFQRIVE 183 (842)
T ss_pred HHhhcCCHHHHHHHHHHHHh
Confidence 32 133455555555554
No 423
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=3e-05 Score=60.18 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~ 42 (198)
..-.|.++|-.|+||||.+..|.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA 122 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLA 122 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHH
Confidence 34468899999999999988776
No 424
>PRK01889 GTPase RsgA; Reviewed
Probab=98.04 E-value=4.3e-06 Score=65.61 Aligned_cols=57 Identities=30% Similarity=0.327 Sum_probs=37.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecC-------CCCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
.+++++|.+|+|||||+|.|++... ...+. ...+|....+........++||||+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence 4799999999999999999997531 11111 112343344444444567899999843
No 425
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.01 E-value=0.00023 Score=53.72 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCC------------ceeEEEEEE-----------------e
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG------------LTQTINFFK-----------------L 65 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~------------~t~~~~~~~-----------------~ 65 (198)
...+++++|++|+||||++..+.... .+........ ...+..+.. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44789999999999999988776431 1111111100 000001100 1
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC--CcEEEEEeccC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD 143 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D 143 (198)
+..+.++||||-.... ...+.++. +++.. ...+.+++|+|++.. ..+..+.+..+. ..-=+++||.|
T Consensus 154 ~~D~ViIDt~Gr~~~~-----~~~l~el~-~~~~~-~~~~~~~LVl~a~~~----~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRA-----SETVEEMI-ETMGQ-VEPDYICLTLSASMK----SKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCC-----HHHHHHHH-HHHhh-hCCCeEEEEEcCccC----HHHHHHHHHHhCCCCCCEEEEEeec
Confidence 4689999999964311 11112222 22222 235678999998642 223333333322 23468999999
Q ss_pred CCCcH
Q 029158 144 TVFPI 148 (198)
Q Consensus 144 l~~~~ 148 (198)
.....
T Consensus 223 et~~~ 227 (270)
T PRK06731 223 ETASS 227 (270)
T ss_pred CCCCc
Confidence 87643
No 426
>PRK13695 putative NTPase; Provisional
Probab=97.99 E-value=6.7e-05 Score=52.92 Aligned_cols=74 Identities=12% Similarity=0.012 Sum_probs=41.6
Q ss_pred ccceEEEEEeC---CCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 103 SLKRVCLLIDT---KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 103 ~~d~vi~v~d~---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
.+++ +++|- .+.......+.+..+...+.|++++.+|.... .....+.. .+...++.+ +.
T Consensus 96 ~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~------~~~~~i~~------~~~~~i~~~---~~ 158 (174)
T PRK13695 96 EADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSVH------PFVQEIKS------RPGGRVYEL---TP 158 (174)
T ss_pred CCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhhH------HHHHHHhc------cCCcEEEEE---cc
Confidence 4555 57884 22222333445555556689999999985321 11122221 123456665 56
Q ss_pred CChHHHHHHHHHhh
Q 029158 180 AGIRSLRTVLSKIA 193 (198)
Q Consensus 180 ~gi~~l~~~i~~~~ 193 (198)
+|-+++...+.+.+
T Consensus 159 ~~r~~~~~~~~~~~ 172 (174)
T PRK13695 159 ENRDSLPFEILNRL 172 (174)
T ss_pred hhhhhHHHHHHHHH
Confidence 77778888887654
No 427
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.97 E-value=0.0001 Score=55.81 Aligned_cols=84 Identities=19% Similarity=0.238 Sum_probs=57.0
Q ss_pred cceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCC
Q 029158 104 LKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181 (198)
Q Consensus 104 ~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g 181 (198)
.|-+++|+.+..+..... ..++-.+...++..++|+||+|+.+.++... +....... ..+.+++.+|+++++|
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~---~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELLREYE---DIGYPVLFVSAKNGDG 154 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHHHHHH---hCCeeEEEecCcCccc
Confidence 556667766665322221 2344455566888889999999998876653 22222222 2368999999999999
Q ss_pred hHHHHHHHHHh
Q 029158 182 IRSLRTVLSKI 192 (198)
Q Consensus 182 i~~l~~~i~~~ 192 (198)
+++|.+++...
T Consensus 155 ~~~l~~~l~~~ 165 (301)
T COG1162 155 LEELAELLAGK 165 (301)
T ss_pred HHHHHHHhcCC
Confidence 99999988654
No 428
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.97 E-value=5e-05 Score=50.67 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
|++.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999986
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00023 Score=56.24 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
...+..|+++|-.|+||||....|..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHH
Confidence 34456799999999999999887763
No 430
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.92 E-value=9.9e-05 Score=57.21 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
....++........|+|+.|+|+..+.......+-+.+. +.+.++|+||+|+.+.....++.+.+.+.. +..
T Consensus 22 ~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~------~~~ 93 (322)
T COG1161 22 KKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKEE------GIK 93 (322)
T ss_pred HHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHHhcC------CCc
Confidence 344445555556699999999999877777666666665 355599999999999877655555555432 456
Q ss_pred cEEeccCCCCChHHHHH
Q 029158 171 VMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~ 187 (198)
.+.+|++.+.+...+..
T Consensus 94 ~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 94 PIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cEEEEeecccCccchHH
Confidence 78889998888877774
No 431
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.85 E-value=7.2e-05 Score=50.65 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999876
No 432
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.81 E-value=2.2e-05 Score=53.39 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
|+++|+||||||||+..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 433
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.80 E-value=0.00012 Score=57.26 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=71.1
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC---C-----cCc---HHHHHHHHh----
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV---K-----PRD---HELISLMER---- 130 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~-----~~~---~~~~~~~~~---- 130 (198)
+..+.+||..|.. ..+..| ..++.. +++|+||+|.++-- . ... ...++.+-.
T Consensus 183 ~~~~~~~DvgGqr------~~R~kW----~~~f~~---v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 183 KLFFRMFDVGGQR------SERKKW----IHCFDN---VTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CeEEEEEecCCch------hhhhhH----HHHhCC---CCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 5678999999952 122233 334443 89999999998611 0 011 122222222
Q ss_pred hCCcEEEEEeccCCCCc-----------------HHHHHHHHHHHHHHHhccC----CCCCcEEeccCCCCChHHHHHHH
Q 029158 131 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVL 189 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~----~~~~v~~~Sa~~~~gi~~l~~~i 189 (198)
.+.|+++++||.|+... .+.+...+.+.+.+..... ..+-++.++|.+-.++..+++.+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 26899999999997432 2344555666666554432 23446788899999999998877
Q ss_pred HHhh
Q 029158 190 SKIA 193 (198)
Q Consensus 190 ~~~~ 193 (198)
.+.+
T Consensus 330 ~~~I 333 (342)
T smart00275 330 KDII 333 (342)
T ss_pred HHHH
Confidence 6543
No 434
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.75 E-value=0.0003 Score=51.25 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=38.7
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHH-------HHHHhhCCcEEEEE
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-------SLMERSQTKYQVVL 139 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~-------~~~~~~~~p~iiv~ 139 (198)
..+.++|+||.-+-+..+... ....+.+.+ ...--.++-++|+-- -.....++ ..+.....|.+=|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l---~~I~~~Lek-~~~rl~~V~LiDs~y--cs~p~~~iS~lL~sl~tMl~melphVNvl 170 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSL---NKIFRKLEK-LDYRLVAVNLIDSHY--CSDPSKFISSLLVSLATMLHMELPHVNVL 170 (290)
T ss_pred CcEEEEeCCCcEEEEeccchH---HHHHHHHHH-cCceEEEEEeeecee--eCChHHHHHHHHHHHHHHHhhcccchhhh
Confidence 478999999975543332211 222222222 111223444566532 11222222 22223478999999
Q ss_pred eccCCCCc
Q 029158 140 TKTDTVFP 147 (198)
Q Consensus 140 nK~Dl~~~ 147 (198)
.|+|+...
T Consensus 171 SK~Dl~~~ 178 (290)
T KOG1533|consen 171 SKADLLKK 178 (290)
T ss_pred hHhHHHHh
Confidence 99998654
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.75 E-value=0.00013 Score=47.11 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=52.6
Q ss_pred EEEE-cCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc
Q 029158 24 IAFA-GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 102 (198)
Q Consensus 24 v~~v-G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
|+++ +..|+||||+...|.... +........-.+... ....++.++|||+.... .....+.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~--~~~~~~~~~l~d~d~-~~~~D~IIiDtpp~~~~------------~~~~~l~--- 63 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVAL--AKEAGRRVLLVDLDL-QFGDDYVVVDLGRSLDE------------VSLAALD--- 63 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHH--HhcCCCcEEEEECCC-CCCCCEEEEeCCCCcCH------------HHHHHHH---
Confidence 3444 458899999887776541 111011100111110 01237999999985321 1112222
Q ss_pred ccceEEEEEeCCCCCCcCcHHHHHHHHhhC----CcEEEEEec
Q 029158 103 SLKRVCLLIDTKWGVKPRDHELISLMERSQ----TKYQVVLTK 141 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~----~p~iiv~nK 141 (198)
.+|.++++++.+.........+++.+++.+ .++.+|+|+
T Consensus 64 ~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 64 QADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 289999999887532333344555555433 356688875
No 436
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.75 E-value=0.00038 Score=54.40 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=67.6
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
.++.+++.-...+|+++-|+||.++....-..+-.++.+. -+.+|+|+|||||+..---..+...+..... .
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyP------T 275 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYP------T 275 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCc------c
Confidence 3444666667779999999999998877777777777654 3678999999999975433333333333211 1
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
-.|..|-....|--.|++.+..+.+.
T Consensus 276 iAfHAsi~nsfGKgalI~llRQf~kL 301 (572)
T KOG2423|consen 276 IAFHASINNSFGKGALIQLLRQFAKL 301 (572)
T ss_pred eeeehhhcCccchhHHHHHHHHHHhh
Confidence 23566667778888888887776543
No 437
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.72 E-value=0.00015 Score=51.29 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.|+++|++|||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999986
No 438
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.71 E-value=0.00069 Score=50.66 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
|+++|.|||||||+...|...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 439
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.69 E-value=3.4e-05 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.|++.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999885
No 440
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.69 E-value=2.9e-05 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+|+++|.+||||||+-..|...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHH
Confidence 357999999999999999999876
No 441
>PRK08118 topology modulation protein; Reviewed
Probab=97.68 E-value=3.9e-05 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+|+++|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.67 E-value=3.5e-05 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQW 45 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~ 45 (198)
--|+++|++|||||||++.+.+-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999753
No 443
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00019 Score=54.87 Aligned_cols=153 Identities=22% Similarity=0.316 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-----cc-------------------------eeecCCCCceeE-EEE-----
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GV-------------------------VRTSDKPGLTQT-INF----- 62 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~-----~~-------------------------~~~~~~~~~t~~-~~~----- 62 (198)
.....++++|--|+||||-|..|.... ++ ..+....+.... +.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 346679999999999999999887421 00 111100000000 000
Q ss_pred -EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhccc-ccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEE
Q 029158 63 -FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV-SLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVL 139 (198)
Q Consensus 63 -~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~ 139 (198)
...+..+.++||+|=..+ .....+..+.+.+-.-.... ..+-+++++|+.-| .......+...+. ++ -=+++
T Consensus 217 Akar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~ea-v~l~GiIl 291 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEA-VGLDGIIL 291 (340)
T ss_pred HHHcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHh-cCCceEEE
Confidence 012568999999993222 11122222222222111111 13448888899853 2223333333332 22 25789
Q ss_pred eccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158 140 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 140 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~ 187 (198)
||+|-...... .-.+...+ ..|+.++ --|+++++|..
T Consensus 292 TKlDgtAKGG~---il~I~~~l------~~PI~fi--GvGE~~~DL~~ 328 (340)
T COG0552 292 TKLDGTAKGGI---ILSIAYEL------GIPIKFI--GVGEGYDDLRP 328 (340)
T ss_pred EecccCCCcce---eeeHHHHh------CCCEEEE--eCCCChhhccc
Confidence 99995543321 11122221 4788777 35777777754
No 444
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.66 E-value=0.0011 Score=46.68 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=39.8
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccCCCC
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVF 146 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~ 146 (198)
++.++|||+.... .....+ ..+|.+++++++..........+++.++..+. ...+|+|++|...
T Consensus 64 d~viiD~p~~~~~------------~~~~~l---~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER------------GFITAI---APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH------------HHHHHH---HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999974221 011112 23899999998875322223345555555443 4678999998764
Q ss_pred c
Q 029158 147 P 147 (198)
Q Consensus 147 ~ 147 (198)
.
T Consensus 129 ~ 129 (179)
T cd02036 129 V 129 (179)
T ss_pred c
Confidence 3
No 445
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.65 E-value=0.00046 Score=38.77 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=24.2
Q ss_pred ccceEEEEEeCCCCCCc--C-cHHHHHHHHhh--CCcEEEEEeccC
Q 029158 103 SLKRVCLLIDTKWGVKP--R-DHELISLMERS--QTKYQVVLTKTD 143 (198)
Q Consensus 103 ~~d~vi~v~d~~~~~~~--~-~~~~~~~~~~~--~~p~iiv~nK~D 143 (198)
..+.|+|++|.+..... . ...+++.++.. +.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 36789999999873332 2 23445666654 799999999998
No 446
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.63 E-value=5.8e-05 Score=43.38 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 029158 23 EIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~ 43 (198)
..++.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998764
No 447
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.63 E-value=0.00031 Score=43.97 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=42.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccc
Q 029158 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 103 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (198)
+++.|..|+||||+...+...- .. ..+. ... .+ ++.++|+++...... .. .......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l--~~-~g~~-----v~~--~~-d~iivD~~~~~~~~~---------~~---~~~~~~~ 58 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL--AK-RGKR-----VLL--ID-DYVLIDTPPGLGLLV---------LL---CLLALLA 58 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HH-CCCe-----EEE--EC-CEEEEeCCCCccchh---------hh---hhhhhhh
Confidence 6788999999999999888652 11 1111 111 11 799999998543210 00 1122223
Q ss_pred cceEEEEEeCCC
Q 029158 104 LKRVCLLIDTKW 115 (198)
Q Consensus 104 ~d~vi~v~d~~~ 115 (198)
+|.++++++...
T Consensus 59 ~~~vi~v~~~~~ 70 (99)
T cd01983 59 ADLVIIVTTPEA 70 (99)
T ss_pred CCEEEEecCCch
Confidence 788999988865
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.63 E-value=4.5e-05 Score=55.63 Aligned_cols=25 Identities=36% Similarity=0.310 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW 45 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~ 45 (198)
---|+++|++|||||||+|-+.+-+
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468999999999999999998763
No 449
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.59 E-value=5.6e-05 Score=53.00 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
..-+++++|++|+|||||+|.+.+
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHh
Confidence 455799999999999999999986
No 450
>PRK07261 topology modulation protein; Provisional
Probab=97.58 E-value=6.4e-05 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|+++|++|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.57 E-value=6.3e-05 Score=54.08 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..-.++++||+|||||||++.+-+-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3456899999999999999998765
No 452
>PRK08727 hypothetical protein; Validated
Probab=97.56 E-value=0.0012 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+++.|++|+|||.|+.+++..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998765
No 453
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.56 E-value=0.00011 Score=52.49 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 59 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~ 59 (198)
..-|+++|++|+|||||++.|+... .......+.||+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~-~~~~~~v~~TTR~ 41 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH-PDFLFSISCTTRA 41 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC-CccccccCccCCC
Confidence 4458999999999999999998763 1222333455554
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.56 E-value=0.0001 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4455788999999999999999754
No 455
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.52 E-value=7.3e-05 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
|.|.++|+.|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 456
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.50 E-value=0.0016 Score=47.69 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=50.0
Q ss_pred CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh------hCCcEEEEEe
Q 029158 67 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKYQVVLT 140 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~n 140 (198)
..+.|+||.|.... +....+.. +|+|+.=.-.+..-.....+.++.+.+ ..+|.-++.|
T Consensus 84 ~d~VlvDleG~as~------------~~~~aia~---sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~T 148 (231)
T PF07015_consen 84 FDFVLVDLEGGASE------------LNDYAIAR---SDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFT 148 (231)
T ss_pred CCEEEEeCCCCCch------------hHHHHHHH---CCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEe
Confidence 57899999997432 11122221 777765433322111111223333322 2579999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHH
Q 029158 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 141 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~ 187 (198)
+++-....... ..+.+.+. ..|+|.+.-...+.+.+++.
T Consensus 149 r~~~~~~~~~~---~~~~e~~~-----~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 149 RVPAARLTRAQ---RIISEQLE-----SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cCCcchhhHHH---HHHHHHHh-----cCCccccccccHHHHHHHHH
Confidence 99744222211 22233332 26777777666655555554
No 457
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.50 E-value=9.4e-05 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|+++|+|||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 458
>PRK04195 replication factor C large subunit; Provisional
Probab=97.50 E-value=0.0025 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+||||++..+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999886
No 459
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.50 E-value=9.3e-05 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQW 45 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~ 45 (198)
-.++++|+.|+|||||++.|++..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 468999999999999999999973
No 460
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.49 E-value=0.00082 Score=51.08 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~ 77 (198)
+..+.|.++++|++|-|||++++++.... ....+. + ....++..+++|.-
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~-----~----~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLH--PPQSDE-----D----AERIPVVYVQMPPE 106 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHC--CCCCCC-----C----CccccEEEEecCCC
Confidence 45677899999999999999999999873 111111 0 11246788888764
No 461
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.47 E-value=0.00012 Score=43.28 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 462
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.45 E-value=0.00015 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.+.+.++|++|||||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5667999999999999999999865
No 463
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.45 E-value=0.0024 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
|+++|++||||||+.+.|...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999876
No 464
>PRK14530 adenylate kinase; Provisional
Probab=97.42 E-value=0.00015 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.++|+++|+|||||||+.+.|...
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.41 E-value=0.00015 Score=51.54 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+.|+++|++||||||+++.|...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999843
No 466
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00013 Score=56.45 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQW 45 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~ 45 (198)
--++++||+|||||||++.+.+-+
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347999999999999999999863
No 467
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.38 E-value=0.00015 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 029158 22 PEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~ 42 (198)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999987
No 468
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.38 E-value=0.0001 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
||+++|.+|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999865
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.38 E-value=0.00016 Score=51.58 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999775
No 470
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.36 E-value=0.00019 Score=52.22 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....|++.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999875
No 471
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.36 E-value=0.0019 Score=49.22 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
...|++.|++||||||+++.|..
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999999953
No 472
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.36 E-value=0.00016 Score=52.51 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++|||||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999865
No 473
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.36 E-value=0.00016 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.++++|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 474
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=8.9e-05 Score=52.08 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW 45 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~ 45 (198)
..-+++.||+|+|||||++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458899999999999999999874
No 475
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00016 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--|+++|++|||||||+|-+.+-
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 35899999999999999999873
No 476
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.35 E-value=0.0019 Score=49.09 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=52.3
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 160 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 160 (198)
...++.+.......|.++-|-||.-+++.....+-+.+. .+|-|+|+||+||.++.+.....+.++..
T Consensus 34 akalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~~~~k~~iq~~~~~ 101 (335)
T KOG2485|consen 34 AKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADPKEQKKIIQYLEWQ 101 (335)
T ss_pred HHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCchhhhHHHHHHHhh
Confidence 444556666667799999999999988887766666665 68899999999999977666666665554
No 477
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.34 E-value=0.00024 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|+||||++..++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 56899999999999999999886
No 478
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00026 Score=50.96 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=20.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
+.....+++||+|||||||++.|-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 3445679999999999999988754
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.32 E-value=0.0002 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...++++|++|||||||++.|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999875
No 480
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.0002 Score=52.27 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.|+++|++|+|||||++++-+.
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcc
Confidence 346899999999999999999875
No 481
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.31 E-value=0.00019 Score=47.64 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
|++.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 482
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.31 E-value=0.00022 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
.--.++++|+.|+|||||++.++.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445789999999999999998864
No 483
>PRK06217 hypothetical protein; Validated
Probab=97.30 E-value=0.00023 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+|+++|.+|||||||...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999865
No 484
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.28 E-value=0.0008 Score=50.65 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=43.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceee-cCCCCceeEEEEEEe------CCceEEEeCCCCcc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL------GTKLCLVDLPGYGF 79 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~t~~~~~~~~------~~~~~iiDtpG~~~ 79 (198)
+.+...|.++|+..+|||.|+|.|++....... ....++|..+-.+.. ...+.++||.|+++
T Consensus 18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 345567999999999999999999976322222 223456766544332 35699999999877
No 485
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00024 Score=48.09 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-..|+|++.|.||+|||||..++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 45789999999999999999999854
No 486
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.25 E-value=0.00025 Score=50.15 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.--.++++|+.|+|||||++.+.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3447899999999999999999986
No 487
>PRK03839 putative kinase; Provisional
Probab=97.25 E-value=0.00027 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|+++|+|||||||+...|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.25 E-value=0.00035 Score=50.54 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++|||||||++.|.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456899999999999999999886
No 489
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.24 E-value=0.0026 Score=48.07 Aligned_cols=148 Identities=14% Similarity=0.208 Sum_probs=67.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCC-------CCccccchhHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP-------GYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtp-------G~~~~~~~~~~~~~~~~~~ 94 (198)
|-|+++|.|+|||||+.+.|...- .. .+..+.+++.. .+.+.......+......+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~--~~---------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v 64 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL--EE---------------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAV 64 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH--HH---------------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH--Hh---------------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHH
Confidence 568999999999999999998641 11 11222333321 1211111222333333333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH-----------HHHHHHHHHHHHh
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV-----------ARRAMQIEESLKA 163 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-----------~~~~~~~~~~~~~ 163 (198)
...+.. + -++++|...-....-.+++...+..+.+.++|--.+++...... ++....+..+++.
T Consensus 65 ~r~ls~----~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~ 139 (270)
T PF08433_consen 65 ERALSK----D-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE 139 (270)
T ss_dssp HHHHTT------SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred HHhhcc----C-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence 333322 2 45568887533334455667777778998888888875432211 2233344444432
Q ss_pred ccC---CCCCcEEec-cCCCCChHHHHHHHHH
Q 029158 164 NNS---LVQPVMMVS-SKSGAGIRSLRTVLSK 191 (198)
Q Consensus 164 ~~~---~~~~v~~~S-a~~~~gi~~l~~~i~~ 191 (198)
-.. ...|.|.+. ......++++.+.|..
T Consensus 140 P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~~ 171 (270)
T PF08433_consen 140 PDPKNRWDSPLFTIDSSDEELPLEEIWNALFE 171 (270)
T ss_dssp TTSS-GGGS-SEEEE-TTS---HHHHHHHHHH
T ss_pred CCCCCCccCCeEEEecCCCCCCHHHHHHHHHh
Confidence 221 135677777 5566677888887743
No 490
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.24 E-value=0.00024 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-|+++|++||||||+++++++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998865
No 491
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.23 E-value=0.0037 Score=44.15 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=44.4
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
.+.+.++|||+.... .....+ ..+|.+++++..+.........+++.+...+.|+.+|+||+|..
T Consensus 92 ~~d~viiDtpp~~~~------------~~~~~l---~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 92 GAELIIIDGPPGIGC------------PVIASL---TGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred CCCEEEEECcCCCcH------------HHHHHH---HcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 578999999964221 111222 23899999998875322233455666777788899999999976
Q ss_pred C
Q 029158 146 F 146 (198)
Q Consensus 146 ~ 146 (198)
.
T Consensus 157 ~ 157 (179)
T cd03110 157 D 157 (179)
T ss_pred c
Confidence 4
No 492
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.23 E-value=0.00024 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
|+++|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999775
No 493
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.23 E-value=0.0003 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|+|||||++.|.+.
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999986
No 494
>PRK13949 shikimate kinase; Provisional
Probab=97.22 E-value=0.0003 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+|+++|++||||||+...|...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998875
No 495
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.22 E-value=0.0021 Score=50.54 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....+++++|+.+||||||...|.+.
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 35678999999999999998887764
No 496
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.22 E-value=0.00031 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.--.++++|+.|+|||||++.+.+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999986
No 497
>PRK14531 adenylate kinase; Provisional
Probab=97.21 E-value=0.00036 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+|+++|+|||||||+...|...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998765
No 498
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00031 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.--.++++|+.|+|||||++.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999986
No 499
>PRK08233 hypothetical protein; Provisional
Probab=97.21 E-value=0.00033 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|++.|.+|||||||.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56888999999999999999875
No 500
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.21 E-value=0.00032 Score=51.30 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.--.++++|+.|+|||||++.|++.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999986
Done!