Query 029158
Match_columns 198
No_of_seqs 131 out of 1587
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 13:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pqc_A Probable GTP-binding pr 100.0 4.4E-32 1.5E-36 193.7 22.9 190 2-194 4-193 (195)
2 1svi_A GTP-binding protein YSX 100.0 1.8E-32 6.1E-37 196.0 20.3 191 2-194 4-194 (195)
3 4dhe_A Probable GTP-binding pr 100.0 8.8E-33 3E-37 201.7 18.6 193 3-195 11-211 (223)
4 3iev_A GTP-binding protein ERA 100.0 3.5E-27 1.2E-31 179.8 16.4 171 17-195 6-182 (308)
5 1wf3_A GTP-binding protein; GT 99.9 4E-26 1.4E-30 173.3 15.1 162 20-194 6-172 (301)
6 2dyk_A GTP-binding protein; GT 99.9 3.7E-26 1.3E-30 158.1 13.3 156 21-193 1-160 (161)
7 2qu8_A Putative nucleolar GTP- 99.9 7E-26 2.4E-30 165.8 15.5 177 12-195 18-205 (228)
8 3iby_A Ferrous iron transport 99.9 1.2E-26 4.1E-31 172.5 9.0 160 22-192 2-164 (256)
9 2cxx_A Probable GTP-binding pr 99.9 1.8E-24 6.3E-29 153.5 18.0 170 22-196 2-185 (190)
10 3i8s_A Ferrous iron transport 99.9 3.2E-26 1.1E-30 171.9 7.9 163 21-194 3-168 (274)
11 4dcu_A GTP-binding protein ENG 99.9 5.5E-25 1.9E-29 176.1 14.9 172 18-194 192-368 (456)
12 2hjg_A GTP-binding protein ENG 99.9 2E-25 6.8E-30 177.7 12.2 171 19-194 173-348 (436)
13 3a1s_A Iron(II) transport prot 99.9 3.5E-25 1.2E-29 164.8 12.2 160 20-194 4-166 (258)
14 2lkc_A Translation initiation 99.9 5.5E-26 1.9E-30 159.8 7.0 164 18-197 5-173 (178)
15 1pui_A ENGB, probable GTP-bind 99.9 5E-24 1.7E-28 153.8 17.4 182 13-195 18-199 (210)
16 4bas_A ADP-ribosylation factor 99.9 6.6E-25 2.3E-29 157.0 12.7 163 16-194 12-188 (199)
17 3t5d_A Septin-7; GTP-binding p 99.9 1.5E-24 5.2E-29 162.9 15.1 172 20-197 7-206 (274)
18 2fh5_B SR-beta, signal recogni 99.9 3.2E-24 1.1E-28 155.3 16.1 158 19-193 5-214 (214)
19 1wb1_A Translation elongation 99.9 9.7E-25 3.3E-29 175.3 14.6 162 20-194 18-188 (482)
20 3sjy_A Translation initiation 99.9 1.6E-24 5.4E-29 170.9 15.2 164 17-194 4-191 (403)
21 2h57_A ADP-ribosylation factor 99.9 4.1E-25 1.4E-29 157.2 10.5 162 19-197 19-189 (190)
22 1mky_A Probable GTP-binding pr 99.9 1.8E-24 6.2E-29 172.3 14.8 161 22-194 2-165 (439)
23 2gj8_A MNME, tRNA modification 99.9 8.7E-25 3E-29 153.4 11.4 157 21-195 4-166 (172)
24 1upt_A ARL1, ADP-ribosylation 99.9 5.3E-25 1.8E-29 153.7 10.2 160 19-195 5-169 (171)
25 2h17_A ADP-ribosylation factor 99.9 3.5E-25 1.2E-29 156.5 9.3 158 18-192 18-180 (181)
26 1fzq_A ADP-ribosylation factor 99.9 1.3E-24 4.5E-29 153.6 12.2 160 19-195 14-178 (181)
27 1kk1_A EIF2gamma; initiation o 99.9 4.7E-24 1.6E-28 168.6 16.3 164 18-194 7-199 (410)
28 1zd9_A ADP-ribosylation factor 99.9 5.6E-25 1.9E-29 156.4 9.9 159 20-196 21-186 (188)
29 2wji_A Ferrous iron transport 99.9 5.5E-25 1.9E-29 153.3 9.4 158 22-194 4-164 (165)
30 2hjg_A GTP-binding protein ENG 99.9 1.4E-24 4.7E-29 172.9 12.6 159 21-194 3-164 (436)
31 1r8s_A ADP-ribosylation factor 99.9 3.2E-24 1.1E-28 148.8 12.9 156 22-195 1-162 (164)
32 1ksh_A ARF-like protein 2; sma 99.9 2.5E-24 8.5E-29 152.5 12.4 159 19-194 16-179 (186)
33 3q72_A GTP-binding protein RAD 99.9 1.4E-24 4.8E-29 150.9 10.8 158 21-197 2-166 (166)
34 3b1v_A Ferrous iron uptake tra 99.9 9.6E-25 3.3E-29 163.4 10.5 159 21-194 3-163 (272)
35 2b6h_A ADP-ribosylation factor 99.9 2E-24 6.8E-29 154.1 11.6 167 11-194 19-190 (192)
36 1s0u_A EIF-2-gamma, translatio 99.9 6.6E-24 2.3E-28 167.6 15.4 164 18-194 5-197 (408)
37 3llu_A RAS-related GTP-binding 99.9 9.3E-24 3.2E-28 151.0 14.4 167 16-193 15-195 (196)
38 1zj6_A ADP-ribosylation factor 99.9 2.8E-24 9.5E-29 152.5 11.4 160 19-195 14-178 (187)
39 3gee_A MNME, tRNA modification 99.9 2.6E-24 9.1E-29 172.1 12.0 156 22-194 234-397 (476)
40 3j2k_7 ERF3, eukaryotic polype 99.9 3.8E-23 1.3E-27 164.4 18.0 158 17-187 13-217 (439)
41 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.5E-23 5E-28 147.2 13.8 158 19-194 5-173 (177)
42 2a5j_A RAS-related protein RAB 99.9 9.8E-24 3.3E-28 150.2 13.0 157 19-194 19-183 (191)
43 2il1_A RAB12; G-protein, GDP, 99.9 8.2E-24 2.8E-28 150.8 12.6 158 20-194 25-189 (192)
44 1ega_A Protein (GTP-binding pr 99.9 7.3E-24 2.5E-28 161.0 13.0 163 20-194 7-174 (301)
45 3k53_A Ferrous iron transport 99.9 3.2E-24 1.1E-28 160.8 10.8 159 21-194 3-165 (271)
46 4dcu_A GTP-binding protein ENG 99.9 5.6E-24 1.9E-28 170.2 12.9 163 17-194 19-184 (456)
47 2erx_A GTP-binding protein DI- 99.9 1.7E-23 5.9E-28 146.0 13.8 157 21-196 3-168 (172)
48 1z0f_A RAB14, member RAS oncog 99.9 1.5E-23 5E-28 147.3 13.5 158 19-194 13-177 (179)
49 2wjg_A FEOB, ferrous iron tran 99.9 5E-24 1.7E-28 151.2 11.2 161 20-195 6-169 (188)
50 2p5s_A RAS and EF-hand domain 99.9 2.5E-23 8.6E-28 149.1 14.8 163 16-194 23-196 (199)
51 2nzj_A GTP-binding protein REM 99.9 9E-24 3.1E-28 148.0 12.2 158 20-195 3-169 (175)
52 3bc1_A RAS-related protein RAB 99.9 2.9E-23 1E-27 147.6 14.8 158 18-194 8-184 (195)
53 2bov_A RAla, RAS-related prote 99.9 3.3E-23 1.1E-27 148.9 14.9 156 16-194 9-176 (206)
54 2efe_B Small GTP-binding prote 99.9 1.5E-23 5E-28 147.8 12.8 159 19-195 10-175 (181)
55 1f6b_A SAR1; gtpases, N-termin 99.9 1.8E-24 6.1E-29 155.1 8.2 159 20-193 24-197 (198)
56 2g6b_A RAS-related protein RAB 99.9 2.3E-23 8E-28 146.6 13.8 157 19-195 8-174 (180)
57 2gf9_A RAS-related protein RAB 99.9 6E-24 2.1E-28 151.0 10.8 157 19-194 20-184 (189)
58 1lnz_A SPO0B-associated GTP-bi 99.9 2.3E-24 7.7E-29 165.9 9.1 161 21-196 158-331 (342)
59 3con_A GTPase NRAS; structural 99.9 1.8E-23 6E-28 148.6 13.0 155 20-196 20-184 (190)
60 3tkl_A RAS-related protein RAB 99.9 2.6E-23 9E-28 148.3 13.5 157 19-195 14-179 (196)
61 1mky_A Probable GTP-binding pr 99.9 3.9E-23 1.3E-27 164.7 15.9 171 19-194 178-354 (439)
62 1moz_A ARL1, ADP-ribosylation 99.9 6.8E-24 2.3E-28 149.8 10.3 160 19-195 16-180 (183)
63 1ek0_A Protein (GTP-binding pr 99.9 4.9E-24 1.7E-28 148.5 9.4 154 22-194 4-168 (170)
64 4dsu_A GTPase KRAS, isoform 2B 99.9 1.6E-23 5.6E-28 148.4 12.2 153 20-194 3-165 (189)
65 2elf_A Protein translation elo 99.9 9.9E-24 3.4E-28 164.2 11.9 147 23-194 23-179 (370)
66 2j1l_A RHO-related GTP-binding 99.9 3.4E-23 1.1E-27 150.1 13.9 158 19-194 32-208 (214)
67 1z0j_A RAB-22, RAS-related pro 99.9 1.4E-23 4.8E-28 146.3 11.5 156 21-194 6-168 (170)
68 1g16_A RAS-related protein SEC 99.9 1.5E-23 5E-28 146.1 11.4 153 21-194 3-164 (170)
69 1u8z_A RAS-related protein RAL 99.9 5.3E-23 1.8E-27 142.9 14.2 151 21-194 4-166 (168)
70 1kao_A RAP2A; GTP-binding prot 99.9 1.5E-23 5.1E-28 145.5 11.2 152 21-194 3-165 (167)
71 2fg5_A RAB-22B, RAS-related pr 99.9 1.2E-23 4E-28 150.0 10.8 159 19-195 21-186 (192)
72 1c1y_A RAS-related protein RAP 99.9 2.7E-23 9.2E-28 144.4 12.4 154 21-194 3-166 (167)
73 2x77_A ADP-ribosylation factor 99.9 3.3E-24 1.1E-28 152.3 7.8 160 19-195 20-184 (189)
74 3tw8_B RAS-related protein RAB 99.9 6E-24 2E-28 149.6 9.0 157 18-195 6-171 (181)
75 3t1o_A Gliding protein MGLA; G 99.9 2.1E-23 7.3E-28 148.8 11.9 155 19-194 12-191 (198)
76 2a9k_A RAS-related protein RAL 99.9 4.4E-23 1.5E-27 145.8 13.4 156 19-195 16-181 (187)
77 1zbd_A Rabphilin-3A; G protein 99.9 7.5E-23 2.6E-27 146.9 14.6 156 20-194 7-170 (203)
78 2y8e_A RAB-protein 6, GH09086P 99.9 3.6E-23 1.2E-27 145.3 12.7 154 20-195 13-177 (179)
79 1ky3_A GTP-binding protein YPT 99.9 2.7E-23 9.3E-28 146.3 12.1 161 18-194 5-177 (182)
80 3qq5_A Small GTP-binding prote 99.9 3.4E-24 1.2E-28 168.9 8.0 163 16-194 29-195 (423)
81 3reg_A RHO-like small GTPase; 99.9 5.8E-24 2E-28 151.7 8.5 158 19-195 21-188 (194)
82 3cph_A RAS-related protein SEC 99.9 3.8E-23 1.3E-27 149.3 12.8 157 17-194 16-181 (213)
83 1r2q_A RAS-related protein RAB 99.9 3.6E-23 1.2E-27 144.1 12.2 157 20-194 5-168 (170)
84 2gf0_A GTP-binding protein DI- 99.9 1E-22 3.5E-27 145.6 14.8 155 19-195 6-171 (199)
85 2ce2_X GTPase HRAS; signaling 99.9 8.8E-23 3E-27 141.4 14.0 151 22-194 4-164 (166)
86 1m2o_B GTP-binding protein SAR 99.9 2.4E-23 8.3E-28 148.2 11.4 154 20-192 22-189 (190)
87 2fn4_A P23, RAS-related protei 99.9 1.4E-23 4.9E-28 147.6 10.0 158 17-195 5-172 (181)
88 1z08_A RAS-related protein RAB 99.9 3.8E-23 1.3E-27 144.1 12.1 155 20-194 5-168 (170)
89 4dkx_A RAS-related protein RAB 99.9 5.2E-23 1.8E-27 149.1 12.8 154 18-194 10-175 (216)
90 4gzl_A RAS-related C3 botulinu 99.9 1.9E-23 6.5E-28 150.3 10.4 157 19-193 28-203 (204)
91 2atx_A Small GTP binding prote 99.9 1.7E-23 5.9E-28 149.2 10.0 158 18-193 15-191 (194)
92 1z2a_A RAS-related protein RAB 99.9 3.8E-23 1.3E-27 143.7 11.5 154 20-193 4-165 (168)
93 3ihw_A Centg3; RAS, centaurin, 99.9 2.1E-23 7.1E-28 147.8 10.2 156 17-195 16-180 (184)
94 2hup_A RAS-related protein RAB 99.9 9.3E-23 3.2E-27 146.4 13.8 155 19-194 27-192 (201)
95 3dz8_A RAS-related protein RAB 99.9 1.7E-23 5.8E-28 149.0 9.6 156 20-194 22-185 (191)
96 3clv_A RAB5 protein, putative; 99.9 8.1E-23 2.8E-27 146.5 13.2 152 19-193 5-202 (208)
97 3kkq_A RAS-related protein M-R 99.9 9.5E-23 3.2E-27 143.9 13.3 154 19-194 16-181 (183)
98 2ew1_A RAS-related protein RAB 99.9 5.6E-23 1.9E-27 147.6 12.2 153 20-193 25-187 (201)
99 2aka_B Dynamin-1; fusion prote 99.9 1.5E-23 5.2E-28 159.1 9.6 173 17-194 22-252 (299)
100 2bme_A RAB4A, RAS-related prot 99.9 7.2E-23 2.5E-27 144.9 12.4 156 19-194 8-172 (186)
101 2fv8_A H6, RHO-related GTP-bin 99.9 1.9E-23 6.4E-28 150.7 9.5 158 19-194 23-199 (207)
102 4djt_A GTP-binding nuclear pro 99.9 1.7E-23 5.9E-28 151.9 9.4 159 19-195 9-175 (218)
103 3q85_A GTP-binding protein REM 99.9 6.9E-23 2.3E-27 142.7 12.0 158 21-197 2-169 (169)
104 3bwd_D RAC-like GTP-binding pr 99.9 1.3E-23 4.5E-28 148.1 8.3 158 18-193 5-179 (182)
105 1mh1_A RAC1; GTP-binding, GTPa 99.9 4E-23 1.4E-27 146.0 10.8 157 21-195 5-180 (186)
106 1xzp_A Probable tRNA modificat 99.9 3.1E-23 1E-27 166.1 11.3 153 22-193 244-403 (482)
107 2hxs_A RAB-26, RAS-related pro 99.9 7.5E-23 2.6E-27 143.7 12.0 157 20-195 5-173 (178)
108 2iwr_A Centaurin gamma 1; ANK 99.9 6.8E-23 2.3E-27 144.1 11.8 154 20-194 6-168 (178)
109 3t5g_A GTP-binding protein RHE 99.9 3.3E-24 1.1E-28 151.2 4.9 157 18-195 3-169 (181)
110 2oil_A CATX-8, RAS-related pro 99.9 7.5E-23 2.6E-27 145.8 12.0 156 20-193 24-186 (193)
111 2xtp_A GTPase IMAP family memb 99.9 4.8E-23 1.6E-27 153.6 11.4 174 17-195 18-208 (260)
112 2atv_A RERG, RAS-like estrogen 99.9 2.3E-22 7.9E-27 143.7 14.4 155 17-195 24-191 (196)
113 2gco_A H9, RHO-related GTP-bin 99.9 4.1E-23 1.4E-27 148.2 10.5 157 19-193 23-198 (201)
114 1vg8_A RAS-related protein RAB 99.9 3.8E-23 1.3E-27 148.7 10.3 156 19-194 6-174 (207)
115 3geh_A MNME, tRNA modification 99.9 2E-23 6.7E-28 166.5 9.4 156 22-195 225-384 (462)
116 1z06_A RAS-related protein RAB 99.9 7.5E-23 2.6E-27 145.4 11.1 158 19-194 18-187 (189)
117 3cbq_A GTP-binding protein REM 99.9 1E-22 3.6E-27 145.5 11.8 159 18-195 20-188 (195)
118 1x3s_A RAS-related protein RAB 99.9 1.1E-22 3.6E-27 145.0 11.8 155 20-194 14-177 (195)
119 3oes_A GTPase rhebl1; small GT 99.9 8.7E-24 3E-28 151.7 5.9 160 14-195 17-187 (201)
120 2j0v_A RAC-like GTP-binding pr 99.9 7.6E-23 2.6E-27 147.9 10.7 155 19-194 7-179 (212)
121 2o52_A RAS-related protein RAB 99.9 1E-22 3.5E-27 146.1 11.1 156 20-193 24-186 (200)
122 3r7w_A Gtpase1, GTP-binding pr 99.9 5E-22 1.7E-26 151.3 15.4 162 21-192 3-178 (307)
123 2e87_A Hypothetical protein PH 99.9 8.7E-22 3E-26 153.0 16.9 163 19-194 165-335 (357)
124 3q3j_B RHO-related GTP-binding 99.9 5.3E-23 1.8E-27 149.1 9.0 158 18-194 24-202 (214)
125 1d2e_A Elongation factor TU (E 99.9 3E-22 1E-26 157.6 14.0 161 21-194 3-194 (397)
126 2bcg_Y Protein YP2, GTP-bindin 99.9 1.4E-22 4.9E-27 145.8 11.1 155 20-194 7-170 (206)
127 3gj0_A GTP-binding nuclear pro 99.9 1.7E-23 5.8E-28 152.3 6.2 158 17-194 11-174 (221)
128 2f7s_A C25KG, RAS-related prot 99.9 4.6E-22 1.6E-26 144.2 13.8 154 19-194 23-198 (217)
129 2fu5_C RAS-related protein RAB 99.9 7E-23 2.4E-27 144.6 9.0 153 20-194 7-170 (183)
130 3lxw_A GTPase IMAP family memb 99.9 3.5E-22 1.2E-26 147.8 13.0 170 19-195 19-208 (247)
131 3o47_A ADP-ribosylation factor 99.9 4.8E-23 1.6E-27 158.3 8.6 155 21-195 165-327 (329)
132 2yc2_C IFT27, small RAB-relate 99.9 1.7E-23 5.9E-28 150.5 5.7 156 20-194 19-191 (208)
133 1zun_B Sulfate adenylate trans 99.9 2.7E-22 9.2E-27 159.6 12.8 153 19-184 22-213 (434)
134 2q3h_A RAS homolog gene family 99.9 3E-22 1E-26 143.5 11.4 160 17-194 16-194 (201)
135 2c78_A Elongation factor TU-A; 99.9 5.9E-22 2E-26 156.4 13.4 163 19-194 9-211 (405)
136 3p26_A Elongation factor 1 alp 99.9 3.2E-22 1.1E-26 161.1 12.0 151 21-184 33-227 (483)
137 3cpj_B GTP-binding protein YPT 99.9 8.8E-23 3E-27 148.8 7.9 158 19-194 11-175 (223)
138 2zej_A Dardarin, leucine-rich 99.9 2.2E-21 7.6E-26 137.3 14.2 159 21-195 2-178 (184)
139 3lxx_A GTPase IMAP family memb 99.9 2.6E-21 8.8E-26 142.5 15.0 170 17-194 25-213 (239)
140 1g7s_A Translation initiation 99.9 1.1E-22 3.7E-27 166.5 8.4 160 20-194 4-217 (594)
141 3c5c_A RAS-like protein 12; GD 99.9 9.4E-23 3.2E-27 144.8 7.0 152 19-194 19-185 (187)
142 3izy_P Translation initiation 99.9 2.1E-24 7.3E-29 174.2 -3.2 159 20-194 3-167 (537)
143 2qtf_A Protein HFLX, GTP-bindi 99.9 3.1E-21 1.1E-25 149.8 14.2 169 18-194 176-353 (364)
144 3th5_A RAS-related C3 botulinu 99.8 9.2E-24 3.1E-28 151.9 0.0 156 18-192 27-202 (204)
145 3cb4_D GTP-binding protein LEP 99.9 1.4E-21 4.9E-26 159.8 12.7 159 20-195 3-182 (599)
146 2j69_A Bacterial dynamin-like 99.9 1.4E-21 4.9E-26 163.0 13.0 164 20-194 68-324 (695)
147 2x2e_A Dynamin-1; nitration, h 99.9 1.8E-22 6.1E-27 156.7 7.1 171 18-192 28-255 (353)
148 1m7b_A RND3/RHOE small GTP-bin 99.9 3.1E-22 1.1E-26 141.6 7.4 157 19-193 5-181 (184)
149 2g3y_A GTP-binding protein GEM 99.9 6.7E-22 2.3E-26 142.9 9.2 156 20-194 36-202 (211)
150 3izq_1 HBS1P, elongation facto 99.9 9.6E-22 3.3E-26 161.7 11.1 153 19-185 165-362 (611)
151 3mca_A HBS1, elongation factor 99.9 1.9E-23 6.3E-28 171.4 0.9 162 20-194 176-396 (592)
152 1jwy_B Dynamin A GTPase domain 99.9 5.9E-22 2E-26 151.5 9.0 173 18-195 21-262 (315)
153 1jny_A EF-1-alpha, elongation 99.9 1.4E-21 4.7E-26 155.5 11.3 152 20-184 5-202 (435)
154 3tr5_A RF-3, peptide chain rel 99.9 1.7E-21 6E-26 157.6 12.0 117 19-148 11-150 (528)
155 3lvq_E ARF-GAP with SH3 domain 99.9 1.3E-21 4.3E-26 158.3 10.5 155 21-195 322-484 (497)
156 1zo1_I IF2, translation initia 99.9 2.7E-23 9.2E-28 166.5 0.4 158 19-192 2-164 (501)
157 3avx_A Elongation factor TS, e 99.9 1.4E-20 4.7E-25 161.2 16.9 163 19-194 294-485 (1289)
158 2ywe_A GTP-binding protein LEP 99.9 1.3E-21 4.6E-26 159.8 9.7 160 19-195 4-184 (600)
159 1gwn_A RHO-related GTP-binding 99.9 1.1E-21 3.8E-26 141.3 7.8 156 20-193 27-202 (205)
160 1f60_A Elongation factor EEF1A 99.8 1.1E-21 3.7E-26 156.9 7.7 152 20-184 6-201 (458)
161 2wkq_A NPH1-1, RAS-related C3 99.8 4.1E-21 1.4E-25 147.6 9.9 156 20-193 154-328 (332)
162 3zvr_A Dynamin-1; hydrolase, D 99.8 6.5E-21 2.2E-25 158.6 10.9 167 19-192 49-275 (772)
163 1r5b_A Eukaryotic peptide chai 99.8 9.8E-21 3.4E-25 151.7 11.6 154 20-186 42-243 (467)
164 3l0i_B RAS-related protein RAB 99.8 1.2E-23 4E-28 150.8 -5.5 155 20-194 32-195 (199)
165 2cjw_A GTP-binding protein GEM 99.8 6.2E-21 2.1E-25 135.9 7.2 157 20-194 5-171 (192)
166 1nrj_B SR-beta, signal recogni 99.8 1.4E-20 4.8E-25 136.5 9.1 150 18-180 9-169 (218)
167 2qag_A Septin-2, protein NEDD5 99.8 5.4E-20 1.8E-24 142.9 12.5 170 21-195 37-237 (361)
168 3dpu_A RAB family protein; roc 99.8 2.6E-20 8.8E-25 151.8 10.6 154 18-195 38-208 (535)
169 3p32_A Probable GTPase RV1496/ 99.8 8.7E-20 3E-24 141.6 13.0 157 19-195 77-284 (355)
170 1wxq_A GTP-binding protein; st 99.8 2.2E-20 7.4E-25 146.5 6.5 87 22-116 1-114 (397)
171 3r7w_B Gtpase2, GTP-binding pr 99.8 2.9E-19 9.8E-24 135.6 12.4 159 23-193 1-172 (331)
172 3c5h_A Glucocorticoid receptor 99.8 3.8E-19 1.3E-23 132.1 12.3 86 103-194 162-254 (255)
173 2h5e_A Peptide chain release f 99.8 3E-19 1E-23 144.7 12.5 116 20-148 12-150 (529)
174 3vqt_A RF-3, peptide chain rel 99.8 2.7E-19 9.2E-24 145.5 11.6 115 20-147 30-167 (548)
175 2dy1_A Elongation factor G; tr 99.8 7E-19 2.4E-23 146.3 13.6 115 18-145 6-139 (665)
176 2rdo_7 EF-G, elongation factor 99.8 1.7E-18 5.9E-23 144.6 15.6 118 17-147 6-149 (704)
177 2www_A Methylmalonic aciduria 99.8 1.4E-18 4.8E-23 134.3 13.9 156 19-194 72-278 (349)
178 1udx_A The GTP-binding protein 99.8 6.5E-19 2.2E-23 138.5 11.9 159 22-196 158-326 (416)
179 4a9a_A Ribosome-interacting GT 99.8 4.3E-19 1.5E-23 137.5 10.0 91 17-115 68-161 (376)
180 1h65_A Chloroplast outer envel 99.8 2.5E-18 8.6E-23 128.7 13.1 124 20-148 38-170 (270)
181 2qpt_A EH domain-containing pr 99.8 1.5E-18 5E-23 141.4 12.3 136 18-158 62-244 (550)
182 2xex_A Elongation factor G; GT 99.8 9.1E-19 3.1E-23 146.1 11.3 118 17-147 6-142 (693)
183 2qag_C Septin-7; cell cycle, c 99.8 2.2E-18 7.6E-23 135.6 12.6 173 19-196 29-228 (418)
184 1dar_A EF-G, elongation factor 99.8 8.2E-19 2.8E-23 146.3 10.4 117 18-147 9-144 (691)
185 2f9l_A RAB11B, member RAS onco 99.8 2.7E-18 9.3E-23 122.8 11.7 155 21-193 5-166 (199)
186 2p67_A LAO/AO transport system 99.8 1.9E-18 6.4E-23 133.4 11.3 156 19-194 54-260 (341)
187 3def_A T7I23.11 protein; chlor 99.8 5.9E-18 2E-22 126.1 12.9 123 20-147 35-166 (262)
188 3t34_A Dynamin-related protein 99.8 1.6E-18 5.4E-23 134.8 10.1 160 20-188 33-254 (360)
189 1yrb_A ATP(GTP)binding protein 99.8 5.7E-18 1.9E-22 126.1 11.0 167 20-195 13-257 (262)
190 1oix_A RAS-related protein RAB 99.8 1.4E-18 4.7E-23 123.7 7.2 154 20-193 28-190 (191)
191 2ged_A SR-beta, signal recogni 99.8 5.1E-18 1.7E-22 120.6 9.9 133 18-163 45-187 (193)
192 2qnr_A Septin-2, protein NEDD5 99.7 2.2E-17 7.6E-22 125.2 12.7 169 19-193 16-212 (301)
193 3j25_A Tetracycline resistance 99.7 2.7E-18 9.2E-23 142.2 7.1 160 21-194 2-238 (638)
194 2wsm_A Hydrogenase expression/ 99.7 4.5E-18 1.6E-22 123.5 6.7 152 19-195 28-214 (221)
195 4fn5_A EF-G 1, elongation fact 99.7 5.7E-17 1.9E-21 135.8 11.1 118 17-147 9-152 (709)
196 1jal_A YCHF protein; nucleotid 99.7 3.9E-17 1.3E-21 126.0 7.5 87 21-115 2-108 (363)
197 2dby_A GTP-binding protein; GD 99.7 5.1E-17 1.7E-21 126.0 8.2 86 22-115 2-111 (368)
198 1n0u_A EF-2, elongation factor 99.7 2.8E-17 9.6E-22 139.7 6.2 151 19-182 17-220 (842)
199 2qm8_A GTPase/ATPase; G protei 99.7 3.7E-16 1.3E-20 120.2 11.6 155 19-194 53-260 (337)
200 2qag_B Septin-6, protein NEDD5 99.6 2.1E-15 7.3E-20 118.4 13.2 170 21-196 42-236 (427)
201 3h2y_A GTPase family protein; 99.6 2.8E-18 9.5E-23 133.5 -3.4 136 22-161 161-302 (368)
202 3ec1_A YQEH GTPase; atnos1, at 99.6 3.9E-18 1.3E-22 132.8 -3.2 154 21-184 162-320 (369)
203 2hf9_A Probable hydrogenase ni 99.6 7.9E-15 2.7E-19 106.6 9.9 60 131-195 163-224 (226)
204 3sop_A Neuronal-specific septi 99.6 5.4E-14 1.8E-18 105.0 13.1 142 22-165 3-173 (270)
205 1tq4_A IIGP1, interferon-induc 99.5 6.9E-13 2.4E-17 104.1 14.0 166 21-196 69-254 (413)
206 2j37_W Signal recognition part 99.5 1.3E-13 4.3E-18 110.8 8.9 160 19-192 99-310 (504)
207 2ohf_A Protein OLA1, GTP-bindi 99.4 2.5E-13 8.6E-18 105.8 7.0 88 20-115 21-128 (396)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 6.8E-14 2.3E-18 109.1 3.8 89 20-115 19-127 (392)
209 3ohm_A Guanine nucleotide-bind 99.3 1.2E-11 4.1E-16 94.3 9.7 115 66-193 166-316 (327)
210 4fid_A G protein alpha subunit 99.3 6.8E-11 2.3E-15 90.5 12.6 115 66-193 160-326 (340)
211 3l82_B F-box only protein 4; T 99.2 1.4E-10 4.8E-15 82.1 11.5 175 13-197 8-225 (227)
212 1puj_A YLQF, conserved hypothe 99.2 1.9E-11 6.6E-16 91.7 5.8 60 20-80 119-178 (282)
213 3szr_A Interferon-induced GTP- 99.2 2.3E-11 8E-16 100.3 6.2 80 67-148 147-230 (608)
214 1puj_A YLQF, conserved hypothe 99.2 2E-10 6.7E-15 86.2 10.2 93 93-194 13-105 (282)
215 3dm5_A SRP54, signal recogniti 99.1 3.4E-09 1.2E-13 83.7 14.2 146 20-185 99-281 (443)
216 3cnl_A YLQF, putative uncharac 99.1 6.5E-11 2.2E-15 87.9 4.1 58 22-80 100-157 (262)
217 1f5n_A Interferon-induced guan 99.0 2.5E-10 8.4E-15 93.3 6.6 99 19-127 36-144 (592)
218 2v3c_C SRP54, signal recogniti 99.0 4.8E-10 1.6E-14 88.8 8.1 159 21-192 99-308 (432)
219 1cip_A Protein (guanine nucleo 99.0 7.4E-11 2.5E-15 91.1 3.2 115 66-193 192-342 (353)
220 1u0l_A Probable GTPase ENGC; p 99.0 1.4E-09 4.9E-14 82.3 9.8 85 102-191 83-169 (301)
221 1zcb_A G alpha I/13; GTP-bindi 99.0 2.3E-10 7.8E-15 88.7 4.7 115 66-193 200-351 (362)
222 2yv5_A YJEQ protein; hydrolase 99.0 1.3E-09 4.5E-14 82.5 8.5 88 100-191 76-165 (302)
223 3kl4_A SRP54, signal recogniti 99.0 1.3E-08 4.4E-13 80.4 13.4 146 20-183 96-278 (433)
224 3ec1_A YQEH GTPase; atnos1, at 99.0 2E-09 6.8E-14 83.8 8.7 101 90-195 61-162 (369)
225 3h2y_A GTPase family protein; 99.0 1.8E-09 6E-14 84.0 8.2 100 88-194 57-159 (368)
226 2xtz_A Guanine nucleotide-bind 98.9 1.5E-09 5E-14 83.9 4.5 115 66-193 182-343 (354)
227 3l2o_B F-box only protein 4; s 98.8 1E-08 3.5E-13 76.1 7.7 99 93-197 203-310 (312)
228 3cnl_A YLQF, putative uncharac 98.8 3E-09 1E-13 79.0 4.5 85 96-192 14-98 (262)
229 1azs_C GS-alpha; complex (lyas 98.8 8E-09 2.7E-13 80.8 6.0 115 66-193 216-383 (402)
230 1j8m_F SRP54, signal recogniti 98.8 1.1E-07 3.8E-12 71.7 11.3 146 21-185 98-281 (297)
231 3e70_C DPA, signal recognition 98.6 4E-07 1.4E-11 69.6 11.2 146 20-185 128-310 (328)
232 1t9h_A YLOQ, probable GTPase E 98.5 9E-08 3.1E-12 72.4 5.1 87 100-189 83-171 (307)
233 2xxa_A Signal recognition part 98.4 1.8E-06 6.3E-11 68.3 9.8 118 20-148 99-256 (433)
234 3q5d_A Atlastin-1; G protein, 98.3 2.6E-06 8.8E-11 67.6 9.6 62 19-80 65-153 (447)
235 2rcn_A Probable GTPase ENGC; Y 98.3 3.8E-06 1.3E-10 64.8 9.0 83 101-189 128-213 (358)
236 1rj9_A FTSY, signal recognitio 98.3 1.1E-05 3.8E-10 61.0 10.9 23 21-43 102-124 (304)
237 2yhs_A FTSY, cell division pro 98.3 6.8E-06 2.3E-10 65.8 10.0 150 20-185 292-480 (503)
238 2ffh_A Protein (FFH); SRP54, s 98.2 2.1E-05 7.2E-10 62.0 11.8 72 66-147 180-252 (425)
239 1vma_A Cell division protein F 98.2 6.3E-06 2.2E-10 62.3 8.1 24 20-43 103-126 (306)
240 1t9h_A YLOQ, probable GTPase E 98.2 5.2E-07 1.8E-11 68.2 1.9 57 21-79 173-236 (307)
241 1zu4_A FTSY; GTPase, signal re 98.2 3E-05 1E-09 59.0 11.4 25 19-43 103-127 (320)
242 2yv5_A YJEQ protein; hydrolase 98.1 7.9E-06 2.7E-10 61.8 6.7 55 22-78 166-227 (302)
243 1ls1_A Signal recognition part 98.0 7E-05 2.4E-09 56.3 11.4 24 20-43 97-120 (295)
244 2rcn_A Probable GTPase ENGC; Y 98.0 3.6E-06 1.2E-10 64.9 4.3 58 22-79 216-280 (358)
245 2px0_A Flagellar biosynthesis 98.0 6.1E-06 2.1E-10 62.2 5.4 24 20-43 104-127 (296)
246 1nij_A Hypothetical protein YJ 98.0 6.9E-05 2.4E-09 57.0 10.8 25 20-44 3-27 (318)
247 3ney_A 55 kDa erythrocyte memb 98.0 5E-06 1.7E-10 58.8 3.5 29 16-44 14-42 (197)
248 1u0l_A Probable GTPase ENGC; p 98.0 7.9E-06 2.7E-10 61.7 4.7 56 22-78 170-232 (301)
249 4ido_A Atlastin-1; GTPase, GTP 97.7 0.00026 8.9E-09 56.1 10.2 64 19-82 65-155 (457)
250 1ex7_A Guanylate kinase; subst 97.7 1.3E-05 4.6E-10 56.1 2.4 36 24-59 4-39 (186)
251 1kgd_A CASK, peripheral plasma 97.7 2.3E-05 7.7E-10 54.6 3.5 23 22-44 6-28 (180)
252 4dzz_A Plasmid partitioning pr 97.7 0.00059 2E-08 48.0 11.0 65 66-146 75-144 (206)
253 1ye8_A Protein THEP1, hypothet 97.7 2.5E-05 8.4E-10 54.4 3.0 22 23-44 2-23 (178)
254 1lvg_A Guanylate kinase, GMP k 97.6 2.3E-05 7.7E-10 55.5 2.8 23 22-44 5-27 (198)
255 3tau_A Guanylate kinase, GMP k 97.6 5.7E-05 1.9E-09 53.8 3.8 25 20-44 7-31 (208)
256 1zp6_A Hypothetical protein AT 97.5 5.4E-05 1.8E-09 52.9 3.1 23 22-44 10-32 (191)
257 3ug7_A Arsenical pump-driving 97.5 0.011 3.6E-07 45.5 16.1 90 104-193 237-333 (349)
258 3tr0_A Guanylate kinase, GMP k 97.5 6.5E-05 2.2E-09 53.0 3.5 23 22-44 8-30 (205)
259 1znw_A Guanylate kinase, GMP k 97.5 4.7E-05 1.6E-09 54.1 2.7 24 21-44 20-43 (207)
260 1z6g_A Guanylate kinase; struc 97.5 5.4E-05 1.9E-09 54.4 3.0 25 20-44 22-46 (218)
261 3a00_A Guanylate kinase, GMP k 97.5 4.8E-05 1.6E-09 53.2 2.6 22 23-44 3-24 (186)
262 3cwq_A Para family chromosome 97.5 0.00041 1.4E-08 49.3 7.5 66 66-146 67-134 (209)
263 3c8u_A Fructokinase; YP_612366 97.5 6.1E-05 2.1E-09 53.6 3.1 26 19-44 20-45 (208)
264 4gp7_A Metallophosphoesterase; 97.5 6.3E-05 2.1E-09 51.9 2.8 23 22-44 10-32 (171)
265 3zvl_A Bifunctional polynucleo 97.4 0.00047 1.6E-08 54.4 8.0 25 20-44 257-281 (416)
266 4b4t_L 26S protease subunit RP 97.4 0.0014 4.7E-08 51.9 10.6 24 21-44 215-238 (437)
267 1kag_A SKI, shikimate kinase I 97.4 7.4E-05 2.5E-09 51.3 3.0 23 22-44 5-27 (173)
268 1s96_A Guanylate kinase, GMP k 97.4 8.3E-05 2.8E-09 53.5 3.3 24 21-44 16-39 (219)
269 3tif_A Uncharacterized ABC tra 97.4 8E-05 2.7E-09 54.2 3.2 24 21-44 31-54 (235)
270 1np6_A Molybdopterin-guanine d 97.4 9.5E-05 3.3E-09 51.2 3.3 25 20-44 5-29 (174)
271 3t61_A Gluconokinase; PSI-biol 97.4 9.3E-05 3.2E-09 52.3 3.2 25 20-44 17-41 (202)
272 3vaa_A Shikimate kinase, SK; s 97.4 0.00012 4.1E-09 51.6 3.6 26 19-44 23-48 (199)
273 2qt1_A Nicotinamide riboside k 97.4 0.00015 5.2E-09 51.4 4.0 24 21-44 21-44 (207)
274 2pcj_A ABC transporter, lipopr 97.4 0.0001 3.5E-09 53.2 3.0 23 22-44 31-53 (224)
275 1y63_A LMAJ004144AAA protein; 97.4 0.00016 5.4E-09 50.4 3.9 27 18-44 7-33 (184)
276 2qor_A Guanylate kinase; phosp 97.4 0.00013 4.6E-09 51.6 3.6 24 21-44 12-35 (204)
277 3kb2_A SPBC2 prophage-derived 97.3 0.00012 4.2E-09 50.1 3.2 23 22-44 2-24 (173)
278 2cbz_A Multidrug resistance-as 97.3 0.00012 3.9E-09 53.4 3.2 24 21-44 31-54 (237)
279 1ly1_A Polynucleotide kinase; 97.3 0.00013 4.5E-09 50.3 3.3 22 22-43 3-24 (181)
280 2onk_A Molybdate/tungstate ABC 97.3 0.00013 4.3E-09 53.3 3.3 23 22-44 25-47 (240)
281 4eun_A Thermoresistant glucoki 97.3 0.00013 4.5E-09 51.5 3.3 24 21-44 29-52 (200)
282 1htw_A HI0065; nucleotide-bind 97.3 0.00011 3.9E-09 50.0 2.9 23 22-44 34-56 (158)
283 2f1r_A Molybdopterin-guanine d 97.3 4.5E-05 1.5E-09 52.7 0.8 24 21-44 2-25 (171)
284 3lw7_A Adenylate kinase relate 97.3 0.00013 4.5E-09 49.9 3.2 20 22-41 2-21 (179)
285 3asz_A Uridine kinase; cytidin 97.3 0.00011 3.6E-09 52.3 2.8 24 21-44 6-29 (211)
286 2bbw_A Adenylate kinase 4, AK4 97.3 0.00015 5.2E-09 52.9 3.7 22 21-42 27-48 (246)
287 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.8E-09 51.4 3.4 23 22-44 7-29 (207)
288 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4.2E-09 54.4 3.2 23 22-44 35-57 (275)
289 1knq_A Gluconate kinase; ALFA/ 97.3 0.00014 4.9E-09 50.0 3.3 24 21-44 8-31 (175)
290 4g1u_C Hemin import ATP-bindin 97.3 0.00013 4.4E-09 54.1 3.2 24 21-44 37-60 (266)
291 1mv5_A LMRA, multidrug resista 97.3 0.00013 4.5E-09 53.3 3.2 24 21-44 28-51 (243)
292 2ff7_A Alpha-hemolysin translo 97.3 0.00013 4.4E-09 53.5 3.2 23 22-44 36-58 (247)
293 1b0u_A Histidine permease; ABC 97.3 0.00013 4.6E-09 53.8 3.2 24 21-44 32-55 (262)
294 1ukz_A Uridylate kinase; trans 97.3 0.0002 7E-09 50.5 4.1 28 17-44 11-38 (203)
295 2eyu_A Twitching motility prot 97.3 0.00012 4.1E-09 54.1 2.9 24 21-44 25-48 (261)
296 1sgw_A Putative ABC transporte 97.3 0.00013 4.5E-09 52.2 3.0 23 22-44 36-58 (214)
297 2bdt_A BH3686; alpha-beta prot 97.3 0.00011 3.9E-09 51.2 2.7 21 23-43 4-24 (189)
298 2pze_A Cystic fibrosis transme 97.3 0.00014 4.9E-09 52.6 3.2 23 22-44 35-57 (229)
299 4b4t_J 26S protease regulatory 97.3 0.0022 7.4E-08 50.2 9.9 23 22-44 183-205 (405)
300 1g6h_A High-affinity branched- 97.3 0.00014 4.9E-09 53.5 3.2 24 21-44 33-56 (257)
301 1qhx_A CPT, protein (chloramph 97.3 0.0002 6.9E-09 49.3 3.6 23 22-44 4-26 (178)
302 2olj_A Amino acid ABC transpor 97.3 0.00016 5.5E-09 53.5 3.2 24 21-44 50-73 (263)
303 1ji0_A ABC transporter; ATP bi 97.3 0.00016 5.4E-09 52.7 3.2 23 22-44 33-55 (240)
304 2ghi_A Transport protein; mult 97.3 0.00016 5.4E-09 53.4 3.2 23 22-44 47-69 (260)
305 2v9p_A Replication protein E1; 97.3 0.00013 4.6E-09 55.0 2.8 25 20-44 125-149 (305)
306 3trf_A Shikimate kinase, SK; a 97.3 0.00019 6.5E-09 49.8 3.4 24 21-44 5-28 (185)
307 3b85_A Phosphate starvation-in 97.2 0.00012 4.3E-09 52.1 2.4 23 22-44 23-45 (208)
308 2ixe_A Antigen peptide transpo 97.2 0.00017 5.7E-09 53.6 3.2 23 22-44 46-68 (271)
309 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00018 6E-09 52.8 3.2 23 22-44 30-52 (250)
310 2qi9_C Vitamin B12 import ATP- 97.2 0.00018 6E-09 52.8 3.2 23 22-44 27-49 (249)
311 1vpl_A ABC transporter, ATP-bi 97.2 0.00018 6E-09 53.0 3.2 24 21-44 41-64 (256)
312 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 6.8E-09 51.4 3.4 23 22-44 6-28 (227)
313 2zu0_C Probable ATP-dependent 97.2 0.00018 6.2E-09 53.3 3.3 23 22-44 47-69 (267)
314 3uie_A Adenylyl-sulfate kinase 97.2 0.00018 6.2E-09 50.8 3.1 25 20-44 24-48 (200)
315 1bif_A 6-phosphofructo-2-kinas 97.2 0.00026 8.9E-09 56.7 4.3 25 20-44 38-62 (469)
316 2ihy_A ABC transporter, ATP-bi 97.2 0.00019 6.5E-09 53.5 3.2 23 22-44 48-70 (279)
317 1sxj_A Activator 1 95 kDa subu 97.2 0.0025 8.5E-08 51.6 10.0 24 21-44 77-100 (516)
318 2i3b_A HCR-ntpase, human cance 97.2 0.00016 5.5E-09 50.7 2.6 22 23-44 3-24 (189)
319 2nq2_C Hypothetical ABC transp 97.2 0.0002 6.7E-09 52.7 3.2 23 22-44 32-54 (253)
320 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.003 1E-07 46.1 9.5 25 20-44 38-62 (262)
321 4b4t_K 26S protease regulatory 97.2 0.00071 2.4E-08 53.4 6.4 23 22-44 207-229 (428)
322 2yz2_A Putative ABC transporte 97.2 0.00021 7E-09 53.0 3.2 24 21-44 33-56 (266)
323 3iij_A Coilin-interacting nucl 97.2 0.0003 1E-08 48.7 3.8 24 21-44 11-34 (180)
324 1xjc_A MOBB protein homolog; s 97.2 0.00026 9E-09 48.6 3.5 25 20-44 3-27 (169)
325 2if2_A Dephospho-COA kinase; a 97.2 0.0002 6.9E-09 50.5 3.0 22 22-43 2-23 (204)
326 3ec2_A DNA replication protein 97.2 0.00016 5.6E-09 50.0 2.5 24 21-44 38-61 (180)
327 1jjv_A Dephospho-COA kinase; P 97.2 0.00024 8.2E-09 50.3 3.3 22 22-43 3-24 (206)
328 3end_A Light-independent proto 97.2 0.00074 2.5E-08 50.8 6.2 23 20-42 40-62 (307)
329 1via_A Shikimate kinase; struc 97.2 0.00022 7.6E-09 49.1 3.0 23 22-44 5-27 (175)
330 3lnc_A Guanylate kinase, GMP k 97.2 0.00013 4.6E-09 52.6 1.9 24 21-44 27-51 (231)
331 1nks_A Adenylate kinase; therm 97.2 0.00022 7.5E-09 49.7 3.0 23 22-44 2-24 (194)
332 4b4t_M 26S protease regulatory 97.2 0.00068 2.3E-08 53.6 6.0 24 21-44 215-238 (434)
333 3nh6_A ATP-binding cassette SU 97.2 0.00013 4.5E-09 55.1 1.9 24 21-44 80-103 (306)
334 2rhm_A Putative kinase; P-loop 97.2 0.00027 9.1E-09 49.3 3.3 24 21-44 5-28 (193)
335 2pjz_A Hypothetical protein ST 97.2 0.00025 8.5E-09 52.4 3.2 24 21-44 30-53 (263)
336 3te6_A Regulatory protein SIR3 97.1 0.0036 1.2E-07 47.5 9.6 25 20-44 44-68 (318)
337 2iyv_A Shikimate kinase, SK; t 97.1 0.00027 9.3E-09 49.0 3.0 23 22-44 3-25 (184)
338 2jaq_A Deoxyguanosine kinase; 97.1 0.00031 1.1E-08 49.4 3.3 22 23-44 2-23 (205)
339 2cdn_A Adenylate kinase; phosp 97.1 0.00043 1.5E-08 48.7 4.0 25 20-44 19-43 (201)
340 3aez_A Pantothenate kinase; tr 97.1 0.00028 9.5E-09 53.5 3.2 25 20-44 89-113 (312)
341 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00025 8.6E-09 54.7 2.9 23 22-44 31-53 (359)
342 2ehv_A Hypothetical protein PH 97.1 0.00028 9.5E-09 51.3 3.0 21 22-42 31-51 (251)
343 1uf9_A TT1252 protein; P-loop, 97.1 0.00033 1.1E-08 49.3 3.3 26 19-44 6-31 (203)
344 3k9g_A PF-32 protein; ssgcid, 97.1 0.001 3.5E-08 49.0 6.1 64 66-144 144-209 (267)
345 1gvn_B Zeta; postsegregational 97.1 0.00038 1.3E-08 52.1 3.7 25 20-44 32-56 (287)
346 3jvv_A Twitching mobility prot 97.1 0.00026 8.8E-09 54.7 2.9 22 23-44 125-146 (356)
347 1kht_A Adenylate kinase; phosp 97.1 0.00034 1.2E-08 48.6 3.3 23 22-44 4-26 (192)
348 1qf9_A UMP/CMP kinase, protein 97.1 0.00041 1.4E-08 48.2 3.7 25 20-44 5-29 (194)
349 4a74_A DNA repair and recombin 97.1 0.00024 8.3E-09 50.9 2.5 23 22-44 26-48 (231)
350 2bbs_A Cystic fibrosis transme 97.1 0.0003 1E-08 52.7 3.0 23 22-44 65-87 (290)
351 1nn5_A Similar to deoxythymidy 97.1 0.00039 1.4E-08 49.3 3.5 25 20-44 8-32 (215)
352 2gza_A Type IV secretion syste 97.1 0.00027 9.3E-09 54.7 2.8 23 22-44 176-198 (361)
353 3tui_C Methionine import ATP-b 97.1 0.00035 1.2E-08 54.0 3.3 24 21-44 54-77 (366)
354 1z47_A CYSA, putative ABC-tran 97.1 0.00031 1.1E-08 54.1 3.0 23 22-44 42-64 (355)
355 1zak_A Adenylate kinase; ATP:A 97.0 0.00036 1.2E-08 50.0 3.2 24 21-44 5-28 (222)
356 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00028 9.7E-09 53.9 2.8 23 22-44 172-194 (330)
357 1e6c_A Shikimate kinase; phosp 97.0 0.00041 1.4E-08 47.5 3.3 23 22-44 3-25 (173)
358 2jeo_A Uridine-cytidine kinase 97.0 0.00035 1.2E-08 51.0 3.1 25 20-44 24-48 (245)
359 3rlf_A Maltose/maltodextrin im 97.0 0.00033 1.1E-08 54.4 3.1 23 22-44 30-52 (381)
360 2kjq_A DNAA-related protein; s 97.0 0.00023 7.7E-09 48.0 1.9 25 20-44 35-59 (149)
361 4e22_A Cytidylate kinase; P-lo 97.0 0.00053 1.8E-08 50.3 4.0 23 20-42 26-48 (252)
362 3fb4_A Adenylate kinase; psych 97.0 0.00038 1.3E-08 49.6 3.2 22 23-44 2-23 (216)
363 3cm0_A Adenylate kinase; ATP-b 97.0 0.0004 1.4E-08 48.2 3.2 22 22-43 5-26 (186)
364 2it1_A 362AA long hypothetical 97.0 0.00035 1.2E-08 54.0 3.1 24 21-44 29-52 (362)
365 2yyz_A Sugar ABC transporter, 97.0 0.00034 1.2E-08 54.0 3.0 24 21-44 29-52 (359)
366 2yvu_A Probable adenylyl-sulfa 97.0 0.00055 1.9E-08 47.6 3.9 25 20-44 12-36 (186)
367 2c95_A Adenylate kinase 1; tra 97.0 0.00048 1.6E-08 48.1 3.5 24 21-44 9-32 (196)
368 1odf_A YGR205W, hypothetical 3 97.0 0.00043 1.5E-08 51.9 3.4 26 19-44 29-54 (290)
369 1rz3_A Hypothetical protein rb 97.0 0.00041 1.4E-08 49.0 3.2 25 19-43 20-44 (201)
370 1zd8_A GTP:AMP phosphotransfer 97.0 0.00043 1.5E-08 49.8 3.3 24 21-44 7-30 (227)
371 1lw7_A Transcriptional regulat 97.0 0.00027 9.2E-09 54.7 2.3 24 21-44 170-193 (365)
372 2wwf_A Thymidilate kinase, put 97.0 0.00049 1.7E-08 48.7 3.5 24 21-44 10-33 (212)
373 3dl0_A Adenylate kinase; phosp 97.0 0.00042 1.4E-08 49.4 3.2 22 23-44 2-23 (216)
374 1g29_1 MALK, maltose transport 97.0 0.00037 1.3E-08 54.1 3.0 23 22-44 30-52 (372)
375 1v43_A Sugar-binding transport 97.0 0.00038 1.3E-08 54.0 3.1 24 21-44 37-60 (372)
376 2ewv_A Twitching motility prot 97.0 0.00035 1.2E-08 54.3 2.8 23 22-44 137-159 (372)
377 1aky_A Adenylate kinase; ATP:A 97.0 0.00053 1.8E-08 49.0 3.6 24 21-44 4-27 (220)
378 4b4t_I 26S protease regulatory 97.0 0.0016 5.4E-08 51.3 6.4 24 21-44 216-239 (437)
379 3tqc_A Pantothenate kinase; bi 97.0 0.00049 1.7E-08 52.3 3.5 26 19-44 90-115 (321)
380 2v54_A DTMP kinase, thymidylat 97.0 0.00064 2.2E-08 47.8 3.9 24 21-44 4-27 (204)
381 2x8a_A Nuclear valosin-contain 97.0 0.00035 1.2E-08 51.9 2.7 21 24-44 47-67 (274)
382 4b4t_H 26S protease regulatory 97.0 0.0013 4.3E-08 52.3 5.8 24 21-44 243-266 (467)
383 3tlx_A Adenylate kinase 2; str 97.0 0.00057 2E-08 49.8 3.6 25 20-44 28-52 (243)
384 3umf_A Adenylate kinase; rossm 96.9 0.00068 2.3E-08 48.6 3.9 24 21-44 29-52 (217)
385 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00052 1.8E-08 50.6 3.3 23 21-43 4-26 (260)
386 1sq5_A Pantothenate kinase; P- 96.9 0.00047 1.6E-08 52.1 3.2 25 20-44 79-103 (308)
387 2plr_A DTMP kinase, probable t 96.9 0.00054 1.9E-08 48.4 3.3 23 22-44 5-27 (213)
388 1tev_A UMP-CMP kinase; ploop, 96.9 0.00052 1.8E-08 47.8 3.2 23 22-44 4-26 (196)
389 3b9p_A CG5977-PA, isoform A; A 96.9 0.0027 9.2E-08 47.4 7.2 24 21-44 54-77 (297)
390 2ze6_A Isopentenyl transferase 96.9 0.00052 1.8E-08 50.4 3.2 22 23-44 3-24 (253)
391 1ixz_A ATP-dependent metallopr 96.9 0.00044 1.5E-08 50.6 2.7 22 23-44 51-72 (254)
392 2vli_A Antibiotic resistance p 96.9 0.00042 1.4E-08 47.9 2.5 24 21-44 5-28 (183)
393 3b9q_A Chloroplast SRP recepto 96.9 0.00064 2.2E-08 51.3 3.6 24 20-43 99-122 (302)
394 1p9r_A General secretion pathw 96.9 0.00041 1.4E-08 54.7 2.6 23 22-44 168-190 (418)
395 3h4m_A Proteasome-activating n 96.9 0.0023 7.7E-08 47.5 6.6 24 21-44 51-74 (285)
396 2oap_1 GSPE-2, type II secreti 96.9 0.00046 1.6E-08 55.8 2.8 22 23-44 262-283 (511)
397 2vp4_A Deoxynucleoside kinase; 96.9 0.00067 2.3E-08 49.0 3.5 26 19-44 18-43 (230)
398 3gd7_A Fusion complex of cysti 96.9 0.00053 1.8E-08 53.5 3.1 24 21-44 47-70 (390)
399 3d31_A Sulfate/molybdate ABC t 96.9 0.00032 1.1E-08 53.9 1.8 23 22-44 27-49 (348)
400 2pt5_A Shikimate kinase, SK; a 96.9 0.00068 2.3E-08 46.1 3.3 22 23-44 2-23 (168)
401 2bwj_A Adenylate kinase 5; pho 96.9 0.00064 2.2E-08 47.6 3.2 24 21-44 12-35 (199)
402 1e4v_A Adenylate kinase; trans 96.9 0.00061 2.1E-08 48.5 3.1 22 23-44 2-23 (214)
403 1ak2_A Adenylate kinase isoenz 96.8 0.00086 2.9E-08 48.4 3.8 24 21-44 16-39 (233)
404 2b8t_A Thymidine kinase; deoxy 96.8 0.003 1E-07 45.4 6.5 41 106-146 90-130 (223)
405 2p5t_B PEZT; postsegregational 96.8 0.00051 1.7E-08 50.4 2.5 25 20-44 31-55 (253)
406 3be4_A Adenylate kinase; malar 96.8 0.00057 1.9E-08 48.8 2.7 24 21-44 5-28 (217)
407 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0021 7.4E-08 48.8 6.1 24 21-44 45-68 (322)
408 3sr0_A Adenylate kinase; phosp 96.8 0.0007 2.4E-08 48.1 3.2 22 23-44 2-23 (206)
409 3cf2_A TER ATPase, transitiona 96.8 0.006 2.1E-07 51.9 9.2 25 20-44 237-261 (806)
410 2pbr_A DTMP kinase, thymidylat 96.8 0.00083 2.8E-08 46.7 3.2 21 23-43 2-22 (195)
411 2z0h_A DTMP kinase, thymidylat 96.8 0.00074 2.5E-08 47.1 2.9 22 23-44 2-23 (197)
412 1oxx_K GLCV, glucose, ABC tran 96.8 0.00032 1.1E-08 54.1 1.1 24 21-44 31-54 (353)
413 1lv7_A FTSH; alpha/beta domain 96.8 0.00064 2.2E-08 49.8 2.7 24 21-44 45-68 (257)
414 1jbk_A CLPB protein; beta barr 96.8 0.001 3.5E-08 45.9 3.6 24 21-44 43-66 (195)
415 1vht_A Dephospho-COA kinase; s 96.8 0.00089 3.1E-08 47.7 3.4 23 21-43 4-26 (218)
416 1uj2_A Uridine-cytidine kinase 96.8 0.00085 2.9E-08 49.1 3.3 26 19-44 20-45 (252)
417 1iy2_A ATP-dependent metallopr 96.8 0.00066 2.3E-08 50.4 2.7 21 24-44 76-96 (278)
418 3kta_A Chromosome segregation 96.8 0.00075 2.6E-08 46.6 2.8 21 23-43 28-48 (182)
419 2pez_A Bifunctional 3'-phospho 96.8 0.0008 2.7E-08 46.4 2.9 23 22-44 6-28 (179)
420 1zuh_A Shikimate kinase; alpha 96.8 0.001 3.4E-08 45.4 3.3 25 20-44 6-30 (168)
421 1gtv_A TMK, thymidylate kinase 96.7 0.00032 1.1E-08 49.8 0.8 22 23-44 2-23 (214)
422 2xb4_A Adenylate kinase; ATP-b 96.7 0.00095 3.3E-08 47.9 3.3 22 23-44 2-23 (223)
423 3r20_A Cytidylate kinase; stru 96.7 0.001 3.6E-08 48.1 3.5 24 20-43 8-31 (233)
424 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00063 2.2E-08 54.3 2.5 25 20-44 137-161 (460)
425 2og2_A Putative signal recogni 96.7 0.001 3.4E-08 51.4 3.6 24 20-43 156-179 (359)
426 1in4_A RUVB, holliday junction 96.7 0.00069 2.4E-08 51.8 2.7 23 22-44 52-74 (334)
427 2f6r_A COA synthase, bifunctio 96.7 0.0011 3.7E-08 49.4 3.6 23 20-42 74-96 (281)
428 3nwj_A ATSK2; P loop, shikimat 96.7 0.00086 2.9E-08 49.1 2.9 24 21-44 48-71 (250)
429 3crm_A TRNA delta(2)-isopenten 96.7 0.0011 3.9E-08 50.2 3.5 24 21-44 5-28 (323)
430 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00095 3.3E-08 47.8 2.9 22 22-43 24-45 (235)
431 3q9l_A Septum site-determining 96.7 0.0074 2.5E-07 44.0 7.8 64 66-144 113-185 (260)
432 3ake_A Cytidylate kinase; CMP 96.6 0.0014 4.9E-08 46.1 3.6 22 22-43 3-24 (208)
433 3bos_A Putative DNA replicatio 96.6 0.0014 4.7E-08 47.1 3.4 25 20-44 51-75 (242)
434 1ltq_A Polynucleotide kinase; 96.6 0.0013 4.5E-08 49.3 3.3 22 22-43 3-24 (301)
435 1m7g_A Adenylylsulfate kinase; 96.6 0.0013 4.3E-08 46.8 3.0 24 21-44 25-48 (211)
436 2w58_A DNAI, primosome compone 96.6 0.0014 4.7E-08 46.1 3.1 23 22-44 55-77 (202)
437 3d3q_A TRNA delta(2)-isopenten 96.6 0.0014 4.6E-08 50.2 3.3 23 22-44 8-30 (340)
438 3pvs_A Replication-associated 96.6 0.012 4.1E-07 46.8 8.8 23 22-44 51-73 (447)
439 1cr0_A DNA primase/helicase; R 96.6 0.00098 3.4E-08 49.9 2.5 23 22-44 36-58 (296)
440 3b60_A Lipid A export ATP-bind 96.6 0.0011 3.9E-08 54.4 3.1 23 22-44 370-392 (582)
441 2p65_A Hypothetical protein PF 96.6 0.0012 4E-08 45.4 2.7 24 21-44 43-66 (187)
442 2grj_A Dephospho-COA kinase; T 96.6 0.0013 4.5E-08 46.2 2.9 26 19-44 10-35 (192)
443 2qp9_X Vacuolar protein sortin 96.6 0.0025 8.6E-08 49.1 4.8 23 22-44 85-107 (355)
444 3b5x_A Lipid A export ATP-bind 96.5 0.0013 4.4E-08 54.1 3.2 24 21-44 369-392 (582)
445 4eaq_A DTMP kinase, thymidylat 96.5 0.0019 6.6E-08 46.6 3.8 25 20-44 25-49 (229)
446 3foz_A TRNA delta(2)-isopenten 96.5 0.0018 6.1E-08 48.8 3.6 25 20-44 9-33 (316)
447 3d8b_A Fidgetin-like protein 1 96.5 0.0057 1.9E-07 47.1 6.6 24 21-44 117-140 (357)
448 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0014 4.8E-08 53.4 3.3 24 21-44 47-70 (538)
449 2cvh_A DNA repair and recombin 96.5 0.0012 4.2E-08 46.8 2.7 22 22-43 21-42 (220)
450 3u61_B DNA polymerase accessor 96.5 0.012 4E-07 44.5 8.2 22 23-44 50-71 (324)
451 3euj_A Chromosome partition pr 96.5 0.0013 4.5E-08 52.7 2.9 22 22-43 30-51 (483)
452 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0016 5.6E-08 43.7 3.0 21 22-42 24-44 (149)
453 1svm_A Large T antigen; AAA+ f 96.5 0.0016 5.6E-08 50.5 3.4 24 21-44 169-192 (377)
454 4a82_A Cystic fibrosis transme 96.5 0.0011 3.6E-08 54.6 2.4 24 21-44 367-390 (578)
455 3vfd_A Spastin; ATPase, microt 96.5 0.0059 2E-07 47.6 6.6 24 21-44 148-171 (389)
456 1n0w_A DNA repair protein RAD5 96.5 0.0014 4.7E-08 47.3 2.7 23 22-44 25-47 (243)
457 2yl4_A ATP-binding cassette SU 96.5 0.0012 3.9E-08 54.6 2.5 24 22-45 371-394 (595)
458 3qf4_B Uncharacterized ABC tra 96.5 0.0012 4.3E-08 54.4 2.7 24 21-44 381-404 (598)
459 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0016 5.4E-08 50.4 3.0 20 23-42 25-44 (365)
460 3qf4_A ABC transporter, ATP-bi 96.4 0.0014 4.6E-08 54.1 2.7 23 22-44 370-392 (587)
461 2qmh_A HPR kinase/phosphorylas 96.4 0.0019 6.6E-08 45.5 3.0 23 22-44 35-57 (205)
462 2obl_A ESCN; ATPase, hydrolase 96.4 0.0015 5.3E-08 50.1 2.8 23 22-44 72-94 (347)
463 3syl_A Protein CBBX; photosynt 96.4 0.0022 7.5E-08 48.1 3.5 26 19-44 65-90 (309)
464 3ozx_A RNAse L inhibitor; ATP 96.4 0.0017 5.8E-08 52.9 3.0 23 22-44 26-48 (538)
465 3n70_A Transport activator; si 96.4 0.0025 8.4E-08 42.4 3.3 23 22-44 25-47 (145)
466 3j16_B RLI1P; ribosome recycli 96.4 0.0019 6.6E-08 53.3 3.3 24 21-44 103-126 (608)
467 1a7j_A Phosphoribulokinase; tr 96.4 0.0014 4.8E-08 49.1 2.2 24 20-43 4-27 (290)
468 3a8t_A Adenylate isopentenyltr 96.4 0.0026 8.8E-08 48.6 3.6 23 22-44 41-63 (339)
469 1q3t_A Cytidylate kinase; nucl 96.4 0.0028 9.5E-08 45.8 3.7 24 20-43 15-38 (236)
470 3ld9_A DTMP kinase, thymidylat 96.4 0.0026 8.9E-08 45.7 3.4 27 18-44 18-44 (223)
471 3t15_A Ribulose bisphosphate c 96.4 0.0023 7.9E-08 47.9 3.3 23 22-44 37-59 (293)
472 3ozx_A RNAse L inhibitor; ATP 96.3 0.0021 7.2E-08 52.3 3.2 23 22-44 295-317 (538)
473 3bk7_A ABC transporter ATP-bin 96.3 0.0021 7.2E-08 53.1 3.2 24 21-44 117-140 (607)
474 2chg_A Replication factor C sm 96.3 0.0026 8.8E-08 44.9 3.3 22 23-44 40-61 (226)
475 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0029 9.8E-08 48.6 3.7 27 18-44 21-47 (359)
476 3cf0_A Transitional endoplasmi 96.3 0.0026 9E-08 47.8 3.4 24 21-44 49-72 (301)
477 1sxj_E Activator 1 40 kDa subu 96.3 0.0024 8.1E-08 48.9 3.2 22 22-43 37-58 (354)
478 2dpy_A FLII, flagellum-specifi 96.3 0.002 6.8E-08 51.1 2.8 24 21-44 157-180 (438)
479 3co5_A Putative two-component 96.3 0.0021 7.1E-08 42.7 2.5 23 22-44 28-50 (143)
480 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0025 8.7E-08 51.9 3.3 23 22-44 313-335 (538)
481 1njg_A DNA polymerase III subu 96.2 0.0023 8E-08 45.7 2.6 23 22-44 46-68 (250)
482 4fcw_A Chaperone protein CLPB; 96.2 0.003 1E-07 47.4 3.3 23 22-44 48-70 (311)
483 1fnn_A CDC6P, cell division co 96.2 0.0026 8.9E-08 49.1 3.0 23 22-44 45-67 (389)
484 1tue_A Replication protein E1; 96.2 0.0017 5.9E-08 45.9 1.8 22 23-44 60-81 (212)
485 1nlf_A Regulatory protein REPA 96.2 0.0022 7.6E-08 47.6 2.5 22 22-43 31-52 (279)
486 3exa_A TRNA delta(2)-isopenten 96.2 0.0032 1.1E-07 47.6 3.3 23 22-44 4-26 (322)
487 1p5z_B DCK, deoxycytidine kina 96.2 0.0024 8.1E-08 47.0 2.6 25 20-44 23-47 (263)
488 3bk7_A ABC transporter ATP-bin 96.2 0.0029 1E-07 52.3 3.3 23 22-44 383-405 (607)
489 4f4c_A Multidrug resistance pr 96.2 0.0018 6.2E-08 58.2 2.2 24 21-44 1105-1128(1321)
490 1l8q_A Chromosomal replication 96.2 0.0031 1E-07 47.8 3.2 24 21-44 37-60 (324)
491 1r6b_X CLPA protein; AAA+, N-t 96.2 0.019 6.6E-07 48.6 8.3 24 21-44 207-230 (758)
492 1sxj_C Activator 1 40 kDa subu 96.1 0.0033 1.1E-07 48.0 3.2 23 22-44 47-69 (340)
493 1qvr_A CLPB protein; coiled co 96.1 0.012 4.1E-07 50.7 6.9 23 22-44 192-214 (854)
494 3j16_B RLI1P; ribosome recycli 96.1 0.0032 1.1E-07 52.0 3.3 23 23-45 380-402 (608)
495 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0036 1.2E-07 48.4 3.3 24 19-42 31-54 (362)
496 1d2n_A N-ethylmaleimide-sensit 96.1 0.0033 1.1E-07 46.4 2.9 25 20-44 63-87 (272)
497 3pxi_A Negative regulator of g 96.1 0.0014 4.9E-08 55.5 1.0 24 21-44 201-224 (758)
498 3gmt_A Adenylate kinase; ssgci 96.1 0.0043 1.5E-07 44.8 3.3 25 20-44 7-31 (230)
499 1qhl_A Protein (cell division 96.0 0.00039 1.3E-08 50.2 -2.3 22 23-44 29-50 (227)
500 2qgz_A Helicase loader, putati 96.0 0.0048 1.6E-07 46.6 3.6 24 21-44 152-175 (308)
No 1
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=100.00 E-value=4.4e-32 Score=193.71 Aligned_cols=190 Identities=33% Similarity=0.546 Sum_probs=159.8
Q ss_pred CccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcccc
Q 029158 2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~ 81 (198)
+..+|+.+.......+....++|+++|.+|+|||||+++|++. ......+.+++|........+.++.+|||||++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 4 RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp CCEEEEEEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSC
T ss_pred hHHHHHHHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCcccc
Confidence 5678888889999899999999999999999999999999998 456667777788887777778899999999987665
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 161 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (198)
......+.+..+...++.....+|++++|+|++.+....+..+++++...+.|+++|+||+|+....+.....+.+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 162 (195)
T 3pqc_A 83 VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF 162 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHH
Confidence 55555677788888888888888999999999887677777778888888999999999999998777766666666665
Q ss_pred HhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
... ...+++++||++|+|+++++++|.+.+.
T Consensus 163 ~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 163 SKY--GEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp HSS--CCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hhc--CCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 532 2478999999999999999999998765
No 2
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=100.00 E-value=1.8e-32 Score=195.99 Aligned_cols=191 Identities=32% Similarity=0.530 Sum_probs=148.5
Q ss_pred CccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCcccc
Q 029158 2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~ 81 (198)
+.++|+.+.....+.+....++|+++|.+|+|||||+++|++........+.+++|........+.++.+|||||+++..
T Consensus 4 ~~~~~~~s~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83 (195)
T ss_dssp CCEEEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred eeeEEEEecCChhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence 46789999999998898899999999999999999999999874355566777778777776667899999999987765
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 161 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (198)
......+.+..+...++.....+|++++|+|++++....+.++++.+...+.|+++|+||+|+....+.....+.+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 163 (195)
T 1svi_A 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL 163 (195)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHH
Confidence 55555667777788888887777999999999987777667777888777899999999999998776666556666554
Q ss_pred HhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.. ....+++++||++|+|+++++++|.+.++
T Consensus 164 ~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 164 NI--DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TC--CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cc--cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 42 23578999999999999999999988764
No 3
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=100.00 E-value=8.8e-33 Score=201.67 Aligned_cols=193 Identities=31% Similarity=0.478 Sum_probs=158.6
Q ss_pred ccceeeccCCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeC----CceEEEeCCCCc
Q 029158 3 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYG 78 (198)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~iiDtpG~~ 78 (198)
+.+|+.+.....+.++...++|+++|.+|+|||||+++|++..........+++|......... ..+.+|||||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 90 (223)
T 4dhe_A 11 QARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYG 90 (223)
T ss_dssp TCEEEEEECSGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCC
T ss_pred hhhHHhcccchhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCC
Confidence 3567888888888888899999999999999999999999984356777888888877655554 789999999987
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 158 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 158 (198)
+........+.+..+...|+.....+|++++|+|+++++...+..++..+...+.|+++|+||+|+....+.......+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 170 (223)
T 4dhe_A 91 YAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQ 170 (223)
T ss_dssp SSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred cccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHH
Confidence 76545555677788888899888889999999999988777778888888888899999999999998777666666666
Q ss_pred HHHHhc----cCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 159 ESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 159 ~~~~~~----~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+... .....+++++||++|+|+++++++|.+.+..
T Consensus 171 ~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 171 KSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 555442 1235789999999999999999999988754
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=3.5e-27 Score=179.84 Aligned_cols=171 Identities=22% Similarity=0.271 Sum_probs=126.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe-CCceEEEeCCCCccccchhHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~-~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
+++....|+++|.+|+|||||+|+|++. .+...++.+++|+... .... +.++.+|||||+.+........+.+..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 4455668999999999999999999998 5566677777876533 2223 678999999998764322333333333
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHHH-HHHHHhhCCcEEEEEeccCCC-CcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
....++. .+|++++|+|++++....+... ++.+...+.|+++|+||+|+. ...........+.+.+ ....+
T Consensus 85 ~~~~~l~---~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~----~~~~~ 157 (308)
T 3iev_A 85 IAKQSLE---EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH----PELTE 157 (308)
T ss_dssp HHHHHHH---HCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC----TTCCC
T ss_pred HHHHHhh---cCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc----cCCCe
Confidence 3334443 4999999999998777777766 777777789999999999998 5555544444444432 23478
Q ss_pred cEEeccCCCCChHHHHHHHHHhhcc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++++||++|.|+++++++|.+.+..
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999999987753
No 5
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=4e-26 Score=173.25 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=117.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+|+|++. .+...++.++||+... +...+.++.+|||||+.+.. ....+. +...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~---~~~~ 79 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEF---MDQE 79 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHH---HHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHH---HHHH
Confidence 3457999999999999999999998 4555566777776532 22336789999999986532 122222 2333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
.......+|++++|+|+++++...+.++++.+... +.|+++|+||+|+...... ..+.+++. ....+++++
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~-----~~~~~~~~i 152 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHEL-----LPEAEPRML 152 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHT-----STTSEEEEC
T ss_pred HHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHh-----cCcCcEEEE
Confidence 33444569999999999987776666667788776 8999999999999875541 11222221 223578999
Q ss_pred ccCCCCChHHHHHHHHHhhc
Q 029158 175 SSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (198)
||++|.|+++++++|.+.+.
T Consensus 153 SA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 153 SALDERQVAELKADLLALMP 172 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHhcc
Confidence 99999999999999988664
No 6
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=3.7e-26 Score=158.12 Aligned_cols=156 Identities=21% Similarity=0.218 Sum_probs=104.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.++|+++|.+|+|||||++++++. ........++++.+.. +...+..+.+|||||...... .. ......+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~---~~~~~~~ 73 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WE---KKIQEKV 73 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CC---HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hH---HHHHHHH
Confidence 368999999999999999999987 3334455566655433 222356899999999754211 01 1112222
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC-CcEEecc
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ-PVMMVSS 176 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~Sa 176 (198)
......+|++++++|++++....+.++.+.+...+.|+++|+||+|+....+ ..++. . ..+. +++++||
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------~~~~~-~---~~~~~~~~~~Sa 143 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL------YLGPL-Y---GLGFGDPIPTSS 143 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG------GCGGG-G---GGSSCSCEECBT
T ss_pred HHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH------hHHHH-H---hCCCCCeEEEec
Confidence 2333458999999999987666666677777777899999999999986521 11111 1 1134 7999999
Q ss_pred CCCCChHHHHHHHHHhh
Q 029158 177 KSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~ 193 (198)
++|.|+++++++|.+.+
T Consensus 144 ~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 144 EHARGLEELLEAIWERL 160 (161)
T ss_dssp TTTBSHHHHHHHHHHHC
T ss_pred ccCCChHHHHHHHHHhC
Confidence 99999999999998865
No 7
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=7e-26 Score=165.79 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=108.9
Q ss_pred CcCCCCC--CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHH
Q 029158 12 VSSSFPA--PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEV 86 (198)
Q Consensus 12 ~~~~~~~--~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~ 86 (198)
....+|. ...++|+++|.+|+|||||+++|++.. .. ..+.+++|....... .+..+.+|||||+.+.......
T Consensus 18 ~~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~-~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 95 (228)
T 2qu8_A 18 YFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRAN-VD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRN 95 (228)
T ss_dssp ----CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTC-EE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCC
T ss_pred eeccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCC-Cc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhh
Confidence 3444554 567899999999999999999999984 32 455666676655433 2468999999998542111110
Q ss_pred HHHHHHHHHHHHhcccccceEEEEEeCCCCCCcC---cHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH-HHHHHH
Q 029158 87 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR---DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRA-MQIEES 160 (198)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~ 160 (198)
...+. .+..++ ..+|++++|+|+++..... ...++..+... +.|+++|+||+|+.......... ..+++.
T Consensus 96 ~~~~~-~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 171 (228)
T 2qu8_A 96 TIEMT-TITALA---HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI 171 (228)
T ss_dssp HHHHH-HHHHHH---TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHH
T ss_pred hHHHH-HHHHhh---ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHH
Confidence 00011 112222 3478999999998754432 23455556554 79999999999998654322211 122222
Q ss_pred HHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.. ......+++++||++|+|+++++++|.+.+..
T Consensus 172 ~~-~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 172 LD-NVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HH-HCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HH-hcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 22 11122689999999999999999999887653
No 8
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=1.2e-26 Score=172.47 Aligned_cols=160 Identities=22% Similarity=0.212 Sum_probs=113.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
++|+++|.+|+|||||+|+|++.. ...++++++|.+... ...+..+.+|||||+.............+.+.+.|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 689999999999999999999984 567788888866442 223568999999998553221000011133444444
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
.. ..+|++++|+|+++ ......+..++.+.+.|+++|+||+|+............+.+.+ ++|++++||++
T Consensus 80 ~~-~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~ 150 (256)
T 3iby_A 80 ID-LEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL------GCSVIPIQAHK 150 (256)
T ss_dssp HH-SCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH------CSCEEECBGGG
T ss_pred hh-CCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc------CCCEEEEECCC
Confidence 22 35899999999986 34445666777777899999999999865432222223333332 47999999999
Q ss_pred CCChHHHHHHHHHh
Q 029158 179 GAGIRSLRTVLSKI 192 (198)
Q Consensus 179 ~~gi~~l~~~i~~~ 192 (198)
|.|+++++++|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 9
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=1.8e-24 Score=153.51 Aligned_cols=170 Identities=25% Similarity=0.400 Sum_probs=113.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchh-HHHHHHHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVKEYVST 100 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~~~~~~~~~~~~~~ 100 (198)
++|+++|.+|+|||||+++|++.. ......+++|......... .+.+|||||+......+ ...+.+......++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999874 3334455555544433334 79999999975432211 1244556666677766
Q ss_pred -ccccceEEEEEeCCCC-----------CCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc-CC
Q 029158 101 -RVSLKRVCLLIDTKWG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SL 167 (198)
Q Consensus 101 -~~~~d~vi~v~d~~~~-----------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~ 167 (198)
...++++++++|+.+. ....+.+.+..+...+.|+++|+||+|+.... .+..+.+.+.+.... ..
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGGGH
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhhcc
Confidence 6778899999998641 11112334455555689999999999998765 222233333322100 00
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
..+++++||++|+|+++++++|.+.+...
T Consensus 157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 157 DKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 12479999999999999999999877543
No 10
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=3.2e-26 Score=171.90 Aligned_cols=163 Identities=21% Similarity=0.236 Sum_probs=114.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.++|+++|.+|+|||||+|+|++.. ...++++++|.+.. +...+..+.+|||||+.+...........+.+.+.|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 5789999999999999999999984 56778888887654 223467899999999755321100000112223333
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
+ ....+|++++|+|+++ .....++..++.+.+.|+++|+||+|+..........+.+.+.+ +++++++||+
T Consensus 81 ~-~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l------g~~~i~~SA~ 151 (274)
T 3i8s_A 81 I-LSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL------GCPVIPLVST 151 (274)
T ss_dssp H-HHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH------TSCEEECCCG
T ss_pred H-hhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc------CCCEEEEEcC
Confidence 3 2245899999999986 34445666777777999999999999865332211223333332 4799999999
Q ss_pred CCCChHHHHHHHHHhhc
Q 029158 178 SGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 178 ~~~gi~~l~~~i~~~~~ 194 (198)
+|.|+++++++|.+.+.
T Consensus 152 ~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKA 168 (274)
T ss_dssp GGHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 11
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=5.5e-25 Score=176.08 Aligned_cols=172 Identities=20% Similarity=0.258 Sum_probs=120.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
....++|+++|.+|+|||||+++|++. ......+++++|.+. .+...+..+.+|||||+..........+.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~- 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL- 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH-
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH-
Confidence 345789999999999999999999987 446678888888763 344446689999999975422111101111111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH--HHHHHHHHHHHHHHhccCCCCCcE
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
..+.....+|++++|+|+++++...+.+++..+...++|+++|+||+|+.... ..++..+.+++.+... ...+++
T Consensus 270 -~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 346 (456)
T 4dcu_A 270 -RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPIL 346 (456)
T ss_dssp -HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG--TTSCEE
T ss_pred -HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC--CCCCEE
Confidence 11222233899999999999888888888888888899999999999998643 3344445555443322 247999
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|.|++++++++.+.+.
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999988664
No 12
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=2e-25 Score=177.69 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=115.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
...++|+++|.+|+|||||+|+|++. .....++++++|.+.. +...+..+.+|||||+.......+..+.+..+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~-- 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL-- 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHH--
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHH--
Confidence 45689999999999999999999998 4455778888887753 33345679999999974321110000111111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCCCcEE
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
..+.....+|++++|+|++++....+.+++..+...++|+++|+||+|+..... .++..+.+.+.+... ...++++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~ 327 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPILF 327 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG--TTSCEEE
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC--CCCCEEE
Confidence 111122238999999999998888888888888878999999999999987543 334444555444322 2579999
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||++|.|++++++.+.+.+.
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHH
Confidence 999999999999999887654
No 13
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3.5e-25 Score=164.80 Aligned_cols=160 Identities=24% Similarity=0.324 Sum_probs=112.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
..++|+++|.+|+|||||+|+|++.. ...++++++|.+... ...+..+.+|||||+..-.... .. +.+.+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~---e~v~~~ 77 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS-ID---EKIARD 77 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS-HH---HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC-HH---HHHHHH
Confidence 35689999999999999999999974 446777888876542 2236689999999975432111 11 223344
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
|+.. ..+|++++|+|+++ ......++..+.+.+.|+++|+||+|+............+.+.+ +++++++||
T Consensus 78 ~~~~-~~~d~ii~V~D~t~--~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l------g~~vi~~SA 148 (258)
T 3a1s_A 78 YLLK-GDADLVILVADSVN--PEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHL------GIPVVFTSS 148 (258)
T ss_dssp HHHH-SCCSEEEEEEETTS--CHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHH------CSCEEECCT
T ss_pred HHhh-cCCCEEEEEeCCCc--hhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHc------CCCEEEEEe
Confidence 4432 45899999999986 23345566677777899999999999864322211122333322 479999999
Q ss_pred CCCCChHHHHHHHHHhhc
Q 029158 177 KSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~~ 194 (198)
++|.|+++++++|.+.++
T Consensus 149 ~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHhh
Confidence 999999999999988764
No 14
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.92 E-value=5.5e-26 Score=159.82 Aligned_cols=164 Identities=19% Similarity=0.214 Sum_probs=109.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
.+..++|+++|.+|+|||||+++|++.. . .....++++.+. .+...+..+.+|||||...-..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------ 70 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSK-V-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT------------ 70 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTC-S-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc-c-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH------------
Confidence 4567899999999999999999999874 1 122233333222 2333456789999999643210
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh--ccCCCCCcE
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVM 172 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~v~ 172 (198)
........+|++++|+|++++......+.+..+...+.|+++|+||+|+..... ++....+.+.... ..+...+++
T Consensus 71 -~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 71 -MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFC 148 (178)
T ss_dssp -SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred -HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEE
Confidence 112334558999999999876656666667767667899999999999986421 1111222111000 001125899
Q ss_pred EeccCCCCChHHHHHHHHHhhcccc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
++||++|+|+++++++|.+.+...+
T Consensus 149 ~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 149 KLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred EEecCCCCCHHHHHHHHHHhhhhhc
Confidence 9999999999999999998776543
No 15
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.92 E-value=5e-24 Score=153.83 Aligned_cols=182 Identities=36% Similarity=0.473 Sum_probs=118.3
Q ss_pred cCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 13 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 13 ~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
...++.....+|+++|++|+|||||+++|++........+.++++........+..+.++||||+..........+.|..
T Consensus 18 l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 18 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred HhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHH
Confidence 33366667789999999999999999999987423444556666654433333347999999998542211222234455
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
....+++....++.+++++|+..+....+.++...+...+.|+++|.||+|+.+..+.+.....+.+.+... .....++
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~-~~~~~~~ 176 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF-NGDVQVE 176 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG-CSCEEEE
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc-CCCCceE
Confidence 566677666678999999999876554444556666667899999999999988654433234444444322 2245789
Q ss_pred EeccCCCCChHHHHHHHHHhhcc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++||+++.|+++++++|.+.+..
T Consensus 177 ~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 177 TFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEeecCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999887643
No 16
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=6.6e-25 Score=156.98 Aligned_cols=163 Identities=14% Similarity=0.135 Sum_probs=104.0
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceee--cCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
.++...++|+++|.+|+|||||+++|++.. .... .+..+.+. ..+...+..+.+|||||.... ..+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~ 79 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQ-SSSKHITATVGYNV-ETFEKGRVAFTVFDMGGAKKF----------RGL 79 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEE-EEEEETTEEEEEEEECCSGGG----------GGG
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCC-CcccccccccceeE-EEEEeCCEEEEEEECCCCHhH----------HHH
Confidence 345567899999999999999999999984 2221 22222111 123344678999999997331 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh-----------CCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPIDVARRAMQIEESL 161 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~-----------~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (198)
...+ ...+|++++|+|+++...-.. ..++..+... +.|+++|+||+|+......++....+....
T Consensus 80 ~~~~---~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 156 (199)
T 4bas_A 80 WETY---YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT 156 (199)
T ss_dssp GGGG---CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH
T ss_pred HHHH---HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh
Confidence 2222 345999999999987422111 2333333322 789999999999987754444333333211
Q ss_pred HhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
. ......+++++||++|+|+++++++|.+.+.
T Consensus 157 ~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 157 L-MGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp H-HTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred h-ccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 1 0223578999999999999999999988764
No 17
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.92 E-value=1.5e-24 Score=162.85 Aligned_cols=172 Identities=19% Similarity=0.263 Sum_probs=105.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCC--------CCceeEEEEEEe---C--CceEEEeCCCCccccchhH-
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK--------PGLTQTINFFKL---G--TKLCLVDLPGYGFAYAKEE- 85 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~--------~~~t~~~~~~~~---~--~~~~iiDtpG~~~~~~~~~- 85 (198)
...+|+++|.+|+|||||+|+|++.. .. ...+ +.++.+...... + .++.+|||||+++......
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~-~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTD-LY-SPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSC-C----------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCC-cc-ccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 45789999999999999999998874 22 2222 111222211111 2 3799999999976432211
Q ss_pred ---HHHHHHHHHHHHHhc----------ccccceEEEEEeCC-CCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHH
Q 029158 86 ---VKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 151 (198)
Q Consensus 86 ---~~~~~~~~~~~~~~~----------~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 151 (198)
....+......|+.. ...+|+++|+++.. +++...+.++++.+.. ++|+|+|+||+|+.+..+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~ 163 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQ 163 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHH
Confidence 111112222333332 11256788888554 4777788888888877 89999999999999888777
Q ss_pred HHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158 152 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
...+.+.+.+... +.+++++||++++|+++++++|.+.++++-
T Consensus 164 ~~~~~i~~~l~~~---~i~v~~~sa~~~~~~~~l~~~l~~~~p~~v 206 (274)
T 3t5d_A 164 QFKKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDRLPLAV 206 (274)
T ss_dssp HHHHHHHHHHHHT---TCCCCCC-----------CHHHHHTCSEEC
T ss_pred HHHHHHHHHHHHc---CCeEEcCCCCCChhHHHHHHHHhcCCCcEE
Confidence 7767777666543 578999999999999999999999887753
No 18
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.92 E-value=3.2e-24 Score=155.29 Aligned_cols=158 Identities=22% Similarity=0.334 Sum_probs=102.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHH-H
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEE-L 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~-~ 93 (198)
...++|+++|.+|+|||||+++|++.. ....+++++.+...... +..+.+|||||... +.. +
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 71 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES----------LRFQL 71 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH----------HHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCChh----------HHHHH
Confidence 356899999999999999999999873 23334444443332222 35799999999621 122 3
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcHH----HHHHHH-----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh-
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA- 163 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~- 163 (198)
...|+. .+|++++|+|+++ ....... +...+. ..+.|+++|+||+|+......+...+.+.+.+..
T Consensus 72 ~~~~~~---~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 147 (214)
T 2fh5_B 72 LDRFKS---SARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTL 147 (214)
T ss_dssp HHHHGG---GEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHh---hCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHH
Confidence 344443 3899999999975 1111112 222222 2268999999999998776666666666655541
Q ss_pred ------------------ccCC-------------CCCcEEeccCCC------CChHHHHHHHHHhh
Q 029158 164 ------------------NNSL-------------VQPVMMVSSKSG------AGIRSLRTVLSKIA 193 (198)
Q Consensus 164 ------------------~~~~-------------~~~v~~~Sa~~~------~gi~~l~~~i~~~~ 193 (198)
.... ..+++++||++| +|+++++++|.+.+
T Consensus 148 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 148 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred hccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 1111 567999999999 99999999998753
No 19
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=9.7e-25 Score=175.31 Aligned_cols=162 Identities=23% Similarity=0.354 Sum_probs=120.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc---c--eeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWG---V--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~---~--~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
..++|+++|.+++|||||+++|++... . ......+++|.+.. +...+..+.+|||||+ .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-------------~ 84 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------A 84 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH-------------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh-------------H
Confidence 357899999999999999999998731 1 12233445565543 2223568999999996 4
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc-cCCCCC
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQP 170 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~ 170 (198)
.+...+......+|++++|+|++++......+.+..+...++|+++|+||+|+.+....+...+++.+.+... .....+
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 4555666677779999999999998877888888888888999999999999998666666667777666544 233579
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|+|+++|+++|.+.+.
T Consensus 165 ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 165 IIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999999998664
No 20
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=1.6e-24 Score=170.91 Aligned_cols=164 Identities=18% Similarity=0.234 Sum_probs=117.5
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---------------------E-EEEeCCceEEEeC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---------------------N-FFKLGTKLCLVDL 74 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---------------------~-~~~~~~~~~iiDt 74 (198)
......+|+++|.+|+|||||+++|++.. ......+..++... . .......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 34567899999999999999999999852 11000000000000 0 0011156899999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCCCcHHHHH
Q 029158 75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVAR 152 (198)
Q Consensus 75 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~~~~~ 152 (198)
||+ ..+...+......+|++++|+|++++. .....+++..+...+ .|+++|+||+|+.+.....+
T Consensus 83 PGh-------------~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 149 (403)
T 3sjy_A 83 PGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALS 149 (403)
T ss_dssp CCC-------------GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHH
T ss_pred CCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHH
Confidence 997 233444555556699999999999876 555667777776655 48999999999998877767
Q ss_pred HHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 153 RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..+.+.+.+........+++++||++|+|+++|+++|.+.+.
T Consensus 150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 777777766655555789999999999999999999998654
No 21
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.1e-25 Score=157.24 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
....+|+++|.+|+|||||+++|++.. . ....+..+.. .. .+...+..+.+|||||.... ......
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 86 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN-A-QSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRY----------RNLWEH 86 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG-G-CCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTT----------GGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC-C-CCCCcCCccceeEEEEEECCEEEEEEECCCCHHH----------HHHHHH
Confidence 346799999999999999999999873 1 1122222221 11 12223678999999996432 111122
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
++ ..+|++++|+|+++...... ..++..+ .. .+.|+++|+||+|+......++..+.+. +........
T Consensus 87 ~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~ 161 (190)
T 2h57_A 87 YY---KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC--LENIKDKPW 161 (190)
T ss_dssp GG---GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT--GGGCCSSCE
T ss_pred HH---hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC--hhhccCCce
Confidence 22 34899999999986311111 1233333 22 3689999999999986543333222221 012222357
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
+++++||++|+|+++++++|.+.++..+
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC----
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999887653
No 22
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=1.8e-24 Score=172.31 Aligned_cols=161 Identities=19% Similarity=0.257 Sum_probs=104.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
|+|+++|.+|+|||||+|+|++. ..+.+.+.+++|++.... ..+..+.+|||||+.... .+.....+......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc-cchHHHHHHHHHHHHH
Confidence 68999999999999999999998 455678888888774422 236689999999975421 1111111222222333
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
..+|++++|+|+..++...+.++.+.++..++|+++|+||+|+.... . ......+... ...+++++||++
T Consensus 80 ---~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~--~---~~~~~~~~~l--g~~~~~~iSA~~ 149 (439)
T 1mky_A 80 ---READLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF--E---REVKPELYSL--GFGEPIPVSAEH 149 (439)
T ss_dssp ---TTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH--H---HHTHHHHGGG--SSCSCEECBTTT
T ss_pred ---HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc--H---HHHHHHHHhc--CCCCEEEEeccC
Confidence 44999999999998877777777787887899999999999985321 1 1121112211 123689999999
Q ss_pred CCChHHHHHHHHHhhc
Q 029158 179 GAGIRSLRTVLSKIAR 194 (198)
Q Consensus 179 ~~gi~~l~~~i~~~~~ 194 (198)
|.|++++++++.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 150 NINLDTMLETIIKKLE 165 (439)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999987764
No 23
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=8.7e-25 Score=153.35 Aligned_cols=157 Identities=23% Similarity=0.243 Sum_probs=105.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|.+|+|||||+++|++. ......+++++|.+.. +...+..+.+|||||+...... ... ......
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~---~~~~~~ 77 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE--VER---IGIERA 77 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH--HHH---HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH--HHH---HHHHHH
Confidence 468999999999999999999987 3334566677775432 2223557899999998542111 110 001111
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
+.....+|++++|+|+++........++..+... +.|+++|+||+|+..... ........+++++
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------------~~~~~~~~~~~~~ 145 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------------GMSEVNGHALIRL 145 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EEEEETTEEEEEC
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------------hhhhccCCceEEE
Confidence 1222448999999999886655555565555543 589999999999854210 0001124689999
Q ss_pred ccCCCCChHHHHHHHHHhhcc
Q 029158 175 SSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
||++|+|+++++++|.+.+..
T Consensus 146 SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC--
T ss_pred eCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999887653
No 24
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=5.3e-25 Score=153.71 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=102.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....+|+++|.+|+|||||+++|++.. .....+..+.+. ..+...+..+.+|||||.... .....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~Dt~G~~~~----------~~~~~--- 69 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNV-ETVTYKNLKFQVWDLGGLTSI----------RPYWR--- 69 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEE-EEEEETTEEEEEEEECCCGGG----------GGGGG---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC-CCCcCCcCccce-EEEEECCEEEEEEECCCChhh----------hHHHH---
Confidence 346789999999999999999999873 221111111111 112223678999999997331 11111
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHH-HHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELI-SLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~-~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
.....+|++++|+|+++...-.. ..++ ..+.. .+.|+++|+||+|+....+..+....+.. ........++++
T Consensus 70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 147 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL--PALKDRKWQIFK 147 (171)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCTTSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc--hhccCCceEEEE
Confidence 22345899999999987432211 2233 33332 47999999999999876443333222211 112223468999
Q ss_pred eccCCCCChHHHHHHHHHhhcc
Q 029158 174 VSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+||++|+|+++++++|.+.+..
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 148 TSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CcCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999987653
No 25
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.92 E-value=3.5e-25 Score=156.46 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=101.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.....+|+++|.+|+|||||+++|++.. .....+..+.+.. .+...+..+.+|||||.... ......+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 85 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESL----------RSSWNTY 85 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTS-CEEEECCSSSSCE-EEEETTEEEEEEEESSSGGG----------TCGGGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCC-CCccCCcCceeeE-EEEECCEEEEEEECCCCHhH----------HHHHHHH
Confidence 3456799999999999999999999884 3444444433321 22234678999999997331 1111222
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
...+|++++|+|+++...... ..++..+. ..+.|+++|+||+|+......++..+.+. .........+++
T Consensus 86 ---~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~ 160 (181)
T 2h17_A 86 ---YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK--LTSIKDHQWHIQ 160 (181)
T ss_dssp ---GTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEE
T ss_pred ---hccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhC--cccccCCceEEE
Confidence 344899999999987422222 22333332 24799999999999987533333222221 111122346899
Q ss_pred EeccCCCCChHHHHHHHHHh
Q 029158 173 MVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~ 192 (198)
++||++|+|+++++++|.+.
T Consensus 161 ~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 161 ACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECBTTTTBTHHHHHHHHHTC
T ss_pred EccCCCCcCHHHHHHHHHhh
Confidence 99999999999999999764
No 26
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=1.3e-24 Score=153.61 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=102.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....+|+++|++|+|||||+++|.+. ......+..+.+.. .+...+..+.+|||||...- ......++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~ 81 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIK-SVQSQGFKLNVWDIGGQRKI----------RPYWRSYF 81 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEE-EEEETTEEEEEEECSSCGGG----------HHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEE-EEEECCEEEEEEECCCCHHH----------HHHHHHHh
Confidence 45789999999999999999999987 33333333332221 12223678999999996321 22333444
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHH-H---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
. .+|++++|+|+++...... ..++..+ . ..+.|+++|+||+|+......++..+.+. .........++++
T Consensus 82 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 82 E---NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN--LHTIRDRVWQIQS 156 (181)
T ss_dssp T---TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEE
T ss_pred C---CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhC--chhccCCceEEEE
Confidence 4 3899999999986322111 1233333 2 23689999999999987543322222211 1111223467999
Q ss_pred eccCCCCChHHHHHHHHHhhcc
Q 029158 174 VSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+||++|+|+++++++|.+.+..
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCTTTCTTHHHHHHHHHHTC--
T ss_pred ccCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.92 E-value=4.7e-24 Score=168.61 Aligned_cols=164 Identities=20% Similarity=0.294 Sum_probs=119.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-ceeecCCCCceeEEEEEE--------------------------eCCceE
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLC 70 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~--------------------------~~~~~~ 70 (198)
.....+|+++|.+++|||||+++|++... .......++.|.+..+.. ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 34567899999999999999999996521 111122244454332111 015699
Q ss_pred EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCCCcH
Q 029158 71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTVFPI 148 (198)
Q Consensus 71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~ 148 (198)
+|||||+ ..+...++.....+|++++|+|++++. .....+.+..+...+ .|+++|+||+|+....
T Consensus 87 iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred EEECCCh-------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 9999996 455667788888899999999999876 555666666666555 4799999999999876
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 149 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
...+..+++++.+........+++++||++|+|+++|+++|.+.++
T Consensus 154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 5555556666655543344689999999999999999999998664
No 28
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.92 E-value=5.6e-25 Score=156.36 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=101.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEE-EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
...+|+++|.+|+|||||+++|++.... ..+.+|. ... .+...+..+.+|||||... +......+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 87 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN---EDMIPTVGFNMRKITKGNVTIKLWDIGGQPR----------FRSMWERY 87 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEETTEEEEEEEECCSHH----------HHTTHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC---CccCCCCceeEEEEEeCCEEEEEEECCCCHh----------HHHHHHHH
Confidence 3578999999999999999999987321 1222111 111 1233467899999999621 22333344
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+. .+|++++|+|+++...... ..++..+ .. .+.|+++|+||+|+....+.++..+.+.. ........+++
T Consensus 88 ~~---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~ 162 (188)
T 1zd9_A 88 CR---GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL--SAIQDREICCY 162 (188)
T ss_dssp HT---TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEE
T ss_pred Hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhCh--hhhccCCeeEE
Confidence 43 4899999999976321111 2233333 22 47899999999999865333222222211 11112346789
Q ss_pred EeccCCCCChHHHHHHHHHhhccc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
++||++|.|+++++++|.+.+...
T Consensus 163 ~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 163 SISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999887653
No 29
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=5.5e-25 Score=153.30 Aligned_cols=158 Identities=27% Similarity=0.329 Sum_probs=101.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|++|+|||||+++|++.. .....++++|.+. .+...+..+.+|||||........ . ...+...|+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~---~~~~~~~~~ 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-I---DEIIARDYI 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS-H---HHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc-h---hHHHHHHHH
Confidence 689999999999999999999863 2234445544432 122235679999999975421111 1 122333444
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
.. ..+|++++|+|+.+ ......++..+...+.|+++|+||+|+..........+.+.+.+ +.+++++||++
T Consensus 78 ~~-~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~SA~~ 148 (165)
T 2wji_A 78 IN-EKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL------GVKVVPLSAAK 148 (165)
T ss_dssp HH-HCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBGGG
T ss_pred hc-CCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHh------CCCEEEEEcCC
Confidence 31 24899999999975 12233455556666899999999999854221111112222222 36899999999
Q ss_pred CCChHHHHHHHHHhhc
Q 029158 179 GAGIRSLRTVLSKIAR 194 (198)
Q Consensus 179 ~~gi~~l~~~i~~~~~ 194 (198)
|+|+++++++|.+.++
T Consensus 149 ~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 149 KMGIEELKKAISIAVK 164 (165)
T ss_dssp TBSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999988764
No 30
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=1.4e-24 Score=172.86 Aligned_cols=159 Identities=19% Similarity=0.290 Sum_probs=101.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.++|+++|.+|+|||||+|+|++. ..+.+.+.+++|++...... +..+.+|||||+.... ......+......+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc--hhHHHHHHHHHHHH
Confidence 478999999999999999999987 45667888899988665443 5789999999985321 11222223333333
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
+. .+|++++|+|+..+....+.++.+.++..++|+++|+||+|+..... ...+ +... ...+++++||+
T Consensus 80 ~~---~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~------~~~~-~~~l--g~~~~~~iSA~ 147 (436)
T 2hjg_A 80 MD---EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYD-FYSL--GFGEPYPISGT 147 (436)
T ss_dssp HH---HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----------CCCS-SGGG--SSCCCEECBTT
T ss_pred HH---hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh------hHHH-HHHc--CCCCeEEEeCc
Confidence 33 39999999999998887777778888877899999999999975321 0111 1111 12378999999
Q ss_pred CCCChHHHHHHHHHhhc
Q 029158 178 SGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 178 ~~~gi~~l~~~i~~~~~ 194 (198)
+|.|++++++++.+.+.
T Consensus 148 ~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp TTBTHHHHHHHHHHTGG
T ss_pred CCCChHHHHHHHHHhcC
Confidence 99999999999998775
No 31
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=3.2e-24 Score=148.83 Aligned_cols=156 Identities=16% Similarity=0.119 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 100 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198)
.+|+++|.+|+|||||++++++... .. ..+..... ..+...+..+.+|||||.... ......++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~-~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~- 66 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYFQ- 66 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS-SC--CCCCSSCCEEEEECSSCEEEEEECCCCGGG----------HHHHHHHTT-
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc-Cc--ccCcCceeEEEEEECCEEEEEEEcCCChhh----------HHHHHHHhc-
Confidence 3799999999999999999998632 21 11111111 122234678999999997321 233333443
Q ss_pred ccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 101 RVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
.+|++++|+|+++...-.. ..++..+.. .+.|+++|+||+|+......++....+.. ........+++++|
T Consensus 67 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~S 142 (164)
T 1r8s_A 67 --NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--HSLRHRNWYIQATC 142 (164)
T ss_dssp --TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCSSCCEEEEECB
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCc--ccccCccEEEEEcc
Confidence 4899999999986321111 223333322 27899999999999875433322222111 11122346799999
Q ss_pred cCCCCChHHHHHHHHHhhcc
Q 029158 176 SKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~~~~ 195 (198)
|++|.|+++++++|.+.+..
T Consensus 143 a~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 143 ATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred cCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999987653
No 32
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.92 E-value=2.5e-24 Score=152.54 Aligned_cols=159 Identities=15% Similarity=0.080 Sum_probs=102.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....+|+++|.+|+|||||++++++.. .....+..+.+. ..+...+..+.+|||||... ......
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~Dt~G~~~-------------~~~~~~ 80 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHRGFKLNIWDVGGQKS-------------LRSYWR 80 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEETTEEEEEEEECCSHH-------------HHTTGG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEECCEEEEEEECCCCHh-------------HHHHHH
Confidence 567899999999999999999999873 222222212111 12222367899999999621 111222
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
.....+|++++|+|+++...-.. ..++..+.. .+.|+++|+||+|+......++..+.+.. ........++++
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 158 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL--DSIRSHHWRIQG 158 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhCh--hhccCCceEEEE
Confidence 33445899999999986422111 123333322 36899999999999876443332222210 111233568999
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||++|+|+++++++|.+.+.
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 159 CSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 33
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=1.4e-24 Score=150.91 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=93.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
..+|+++|.+|+|||||+++|++. ......+..+++....... ....+.+|||||... +..+...++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCcc----------chhhhhhhh
Confidence 468999999999999999999987 3344445555555433322 245789999999632 122333333
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
. .+|++++|+|.++...... ..++..+.. .+.|+++|+||+|+........ +..++.... .+.++++
T Consensus 71 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~~~~ 142 (166)
T 3q72_A 71 A---MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV--DEGRACAVV---FDCKFIE 142 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred h---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH--HHHHHHHHH---hCCcEEE
Confidence 3 3899999999986321111 223344433 3689999999999976432211 111111111 1478999
Q ss_pred eccCCCCChHHHHHHHHHhhcccc
Q 029158 174 VSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
+||++|+|+++++++|.+.+...|
T Consensus 143 ~Sa~~~~gi~~l~~~l~~~~~~~r 166 (166)
T 3q72_A 143 TSAALHHNVQALFEGVVRQIRLRR 166 (166)
T ss_dssp CBGGGTBSHHHHHHHHHHHHHHHC
T ss_pred eccCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998876543
No 34
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=9.6e-25 Score=163.38 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=111.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe--CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.++|+++|.+|+|||||+|+|++.. ...++++++|.+...... +..+.+|||||...-.... .. +.+.+.|+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~-~~---e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS-PE---AKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS-HH---HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC-hH---HHHHHHHH
Confidence 4689999999999999999999874 456777887765432222 5789999999975421111 11 23344555
Q ss_pred hcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 178 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~ 178 (198)
.. ..+|++++|+|+++ ......+..++.+.+.|+++|+||+|+............+.+.+ +++++++||++
T Consensus 77 ~~-~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~ 147 (272)
T 3b1v_A 77 LS-QRADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL------GVPVVATSALK 147 (272)
T ss_dssp HT-TCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBTTT
T ss_pred hc-CCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc------CCCEEEEEccC
Confidence 43 35899999999976 23334555666667899999999999864322111112233322 47999999999
Q ss_pred CCChHHHHHHHHHhhc
Q 029158 179 GAGIRSLRTVLSKIAR 194 (198)
Q Consensus 179 ~~gi~~l~~~i~~~~~ 194 (198)
|.|+++++++|.+.+.
T Consensus 148 g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 148 QTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TBSHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988653
No 35
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.92 E-value=2e-24 Score=154.09 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=103.0
Q ss_pred CCcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHH
Q 029158 11 KVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAW 90 (198)
Q Consensus 11 ~~~~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~ 90 (198)
...+++......+|+++|.+|+|||||++++++.. .....+..+.. ...+...+..+.+|||||....
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~-~~~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~~---------- 86 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN-VETVEYKNICFTVWDVGGQDKI---------- 86 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSC-CEEEEEETTEE-EEEEEETTEEEEEEECC---------------
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCC-ccccCCcCcee-EEEEEECCEEEEEEECCCCHhH----------
Confidence 33444556678899999999999999999999874 22211111110 1112224678999999996321
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 165 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 165 (198)
......++. .+|++++|+|+++...-.. ..++..+.. .+.|+++|+||+|+......++....+.. ....
T Consensus 87 ~~~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~~~ 161 (192)
T 2b6h_A 87 RPLWRHYFQ---NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGL--QHLR 161 (192)
T ss_dssp CTTHHHHHH---TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCS
T ss_pred HHHHHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCc--cccc
Confidence 222333343 3899999999986421111 223333322 27899999999999875433332222211 1111
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 166 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
....+++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 162 SRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp SCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 23467999999999999999999988764
No 36
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=6.6e-24 Score=167.61 Aligned_cols=164 Identities=22% Similarity=0.295 Sum_probs=110.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-ceeecCCCCceeEEEEEE--------------------------eCCceE
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLC 70 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~--------------------------~~~~~~ 70 (198)
.....+|+++|.+++|||||+++|++... .......++.|.+..+.. ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 34568999999999999999999996521 111122244454432211 015699
Q ss_pred EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-CcCcHHHHHHHHhhC-CcEEEEEeccCCCCcH
Q 029158 71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQ-TKYQVVLTKTDTVFPI 148 (198)
Q Consensus 71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~ 148 (198)
+|||||+ ..+...++.....+|++++|+|++++. .....+.+..+...+ .|+++|+||+|+.+..
T Consensus 85 iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 85 FVDSPGH-------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEECSSH-------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred EEECCCH-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 9999996 455667888888899999999999876 555566666666555 4799999999998765
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 149 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
......+++++.+........+++++||++|+|+++|+++|.+.+.
T Consensus 152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 4333445555555443344689999999999999999999998664
No 37
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.91 E-value=9.3e-24 Score=151.00 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=101.6
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
.++....+|+++|.+|+|||||++.+.+............++...... .....+.+|||||...-.... |.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----~~- 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT-----FD- 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT-----CC-
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh-----hh-
Confidence 455678899999999999999999988862111111111122222221 234789999999964311000 00
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHH----HHHHHHHHHHHHh
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDV----ARRAMQIEESLKA 163 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~ 163 (198)
...++.. +|++++|+|+++........+..++.. .+.|+++|+||+|+...... ........+.+..
T Consensus 89 -~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 89 -YEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp -HHHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 0234443 899999999987532333344444433 27899999999999875432 2222222333333
Q ss_pred cc--CCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 164 NN--SLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 164 ~~--~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.. ....+++++||++ +|++++++.|.+.+
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 21 3357899999999 99999999998754
No 38
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.8e-24 Score=152.53 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=103.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....+|+++|.+|+|||||+++|++.... ...+..+.+. ..+...+..+.+|||||.... ......++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 81 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV-EEIVINNTRFLMWDIGGQESL----------RSSWNTYY 81 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC-EEEEETTEEEEEEECCC--------------CGGGHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce-EEEEECCEEEEEEECCCCHhH----------HHHHHHHh
Confidence 45689999999999999999999977432 3333322221 122234678999999996321 12223344
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
. .+|++++|+|+++...-.. ..++..+.. .+.|+++|+||+|+......++..+.+... .....+.++++
T Consensus 82 ~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 156 (187)
T 1zj6_A 82 T---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT--SIKDHQWHIQA 156 (187)
T ss_dssp T---TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG--GCCSSCEEEEE
T ss_pred c---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChh--hhcCCCcEEEE
Confidence 3 3899999999987422221 233333332 479999999999998654333322222111 12233568999
Q ss_pred eccCCCCChHHHHHHHHHhhcc
Q 029158 174 VSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+||++|+|+++++++|.+.+..
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 157 CCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp CBTTTTBTHHHHHHHHHHHHCC
T ss_pred ccCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 39
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=2.6e-24 Score=172.06 Aligned_cols=156 Identities=24% Similarity=0.254 Sum_probs=92.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHH-HHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-LVKEY 97 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~-~~~~~ 97 (198)
.+|+++|.+|+|||||+|+|++. ....+.+.+++|.+.. +...+..+.+|||||+.+.. ..++. .+...
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~------~~ve~~gi~~~ 306 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG------EEIEHEGIRRS 306 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch------hHHHHHHHHHH
Confidence 57999999999999999999997 4566788888888753 33346789999999985421 11111 12334
Q ss_pred HhcccccceEEEEEeCCCCCCcC----cHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPR----DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~----~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
......+|++++|+|++++.... ..++++.+. +.|+++|+||+|+........ +.+.+. ...++++
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~------~~~~~i~ 376 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG------TGTEVIG 376 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH------HTSCEEE
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc------CCCceEE
Confidence 45566799999999999866552 333444333 699999999999987654422 222222 1268999
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||++|+|+++++++|.+.+.
T Consensus 377 vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 377 ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CBTTTTBSHHHHHHHHTHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999988775
No 40
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.91 E-value=3.8e-23 Score=164.44 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=110.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEEEEE---E
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFF---K 64 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~---~ 64 (198)
+.....+|+++|.+++|||||+++|++.... ......+++|.+.... .
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3456689999999999999999999654100 0011124566665432 2
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC-------cCcHHHHHHHHhhCCc-EE
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQ 136 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i 136 (198)
.+..+.+|||||+ ..+...+......+|++++|+|++.+.. ....+.+..+...++| ++
T Consensus 93 ~~~~~~iiDTPGh-------------~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 93 EKKHFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 159 (439)
T ss_pred CCeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEE
Confidence 3678999999997 4445556666667999999999998764 4567777777777888 99
Q ss_pred EEEeccCCCCcH----HHHHHHHHHHHHHHhccC---CCCCcEEeccCCCCChHHHHH
Q 029158 137 VVLTKTDTVFPI----DVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRT 187 (198)
Q Consensus 137 iv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~---~~~~v~~~Sa~~~~gi~~l~~ 187 (198)
+|+||+|+.... ..++..+.+.+.+..... ...+++++||++|+|++++.+
T Consensus 160 vviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 160 VLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999999997532 233344444444433221 246899999999999999544
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=1.5e-23 Score=147.22 Aligned_cols=158 Identities=11% Similarity=0.017 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeC---CceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+|||||++++++........+..+.+........+ ..+.+|||||.... .....
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 74 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF----------RSLRT 74 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------HHHHG
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhHH
Confidence 346789999999999999999999873211111121111111122222 47999999996321 22222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
. ....+|++++|+|+.+...... ..++..+.. .+.|+++|+||+|+....... +..++.... ..
T Consensus 75 ~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---~~~~~~~~~--~~ 146 (177)
T 1wms_A 75 P---FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST---EEAQAWCRD--NG 146 (177)
T ss_dssp G---GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCH---HHHHHHHHH--TT
T ss_pred H---HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCH---HHHHHHHHh--cC
Confidence 2 2344899999999986322222 233443332 467999999999997322111 112222111 22
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..+++++||++|.|+++++++|.+.+.
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 147 DYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999988753
No 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=9.8e-24 Score=150.23 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=98.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+|||||+++|++...........+.+........ ...+.+|||||.... .....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 88 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITR 88 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh----------hhhHH
Confidence 44579999999999999999999987421111111222222222222 247899999995321 11122
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (198)
.++. .+|++++|+|+++...... ..++..+... +.|+++|+||+|+...... .+....+.+. .+.+
T Consensus 89 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~ 159 (191)
T 2a5j_A 89 SYYR---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE------HGLI 159 (191)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH------HTCE
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHH------cCCE
Confidence 3333 3899999999986322222 2344455432 6899999999999753221 1111122111 1468
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++++|+++++++|.+.+.
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 160 FMETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=8.2e-24 Score=150.81 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+++|++........+..+.+........ ...+.+|||||.... ......
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~~~~~~ 94 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF----------NSITSA 94 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------HHHHHH
Confidence 4568999999999999999999987421111222222222222222 247899999996321 222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....... .+..++..... ...+++
T Consensus 95 ~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~~~--~~~~~~ 167 (192)
T 2il1_A 95 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFAQQI--TGMRFC 167 (192)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTS--TTCEEE
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHhc--CCCeEE
Confidence 4433 899999999987432222 233444443 368999999999997543211 11122222211 247899
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|+|+++++++|.+.+.
T Consensus 168 ~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 168 EASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 44
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=7.3e-24 Score=160.98 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=113.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCc-cccchhHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYAKEEVKDAWEELVK 95 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~-~~~~~~~~~~~~~~~~~ 95 (198)
....|+++|++|+|||||+|+|++. .+...++.+++|+... +...+.++.++||||+. ... ......+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~ 80 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNK 80 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-----hhHHHHHHH
Confidence 3457999999999999999999998 5555666777775422 22336789999999974 110 000011222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC-cHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
........+|++++|+|++. +...+..+++.+...+.|+++|+||+|+.. ..........+.+ ..+ ..+++++
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~----~~~-~~~~i~i 154 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMN-FLDIVPI 154 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSC-CSEEEEC
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHH----hcC-cCceEEE
Confidence 22344567999999999987 666666677777766899999999999987 3322222222221 111 2368999
Q ss_pred ccCCCCChHHHHHHHHHhhc
Q 029158 175 SSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (198)
||+++.|++++++++.+.++
T Consensus 155 SA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHhCC
Confidence 99999999999999987654
No 45
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=3.2e-24 Score=160.84 Aligned_cols=159 Identities=23% Similarity=0.306 Sum_probs=111.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
.++|+++|++|+|||||+++|++.. ...++.+++|.+.. +...+..+.+|||||+.+-..... . ....+.|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI-D---ELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH-H---HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH-H---HHHHHHh
Confidence 4689999999999999999999984 36677787776654 222356799999999754221111 1 1223333
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC-CcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
+. ...+|++++|+|+++. .....++..+...+ .|+++|+||+|+............+.+.+ +.+++++||
T Consensus 77 ~~-~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------g~~~~~~Sa 147 (271)
T 3k53_A 77 IL-DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL------GVPVIPTNA 147 (271)
T ss_dssp HH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH------SSCEEECBG
T ss_pred hh-ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc------CCcEEEEEe
Confidence 32 3458999999999863 33445555555666 99999999999864332221223333333 489999999
Q ss_pred CCCCChHHHHHHHHHhhc
Q 029158 177 KSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~~ 194 (198)
++|.|++++++++.+.+.
T Consensus 148 ~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAE 165 (271)
T ss_dssp GGTBTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 46
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=5.6e-24 Score=170.22 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=103.9
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
+....++|+++|.+|+|||||+|+|++. ....+.+.+++|.+...... +..+.+|||||+... .+...+.+...
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~ 95 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQ 95 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHH
Confidence 3344689999999999999999999997 45567778888887665443 578999999997532 11122333333
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
...++.. +|++++|+|+..++...+.++.+.+...++|+++|+||+|+..... ...+.. . ......++
T Consensus 96 ~~~~~~~---ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~------~~~e~~-~--lg~~~~~~ 163 (456)
T 4dcu_A 96 AEIAMDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-S--LGFGEPYP 163 (456)
T ss_dssp HHHHHHH---CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------CCSG-G--GSSSSEEE
T ss_pred HHhhHhh---CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh------hHHHHH-H--cCCCceEE
Confidence 3334433 8999999999998888888888988888999999999999864321 111111 1 11235689
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||++|.|++++++++.+.+.
T Consensus 164 iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 164 ISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CCTTTCTTHHHHHHHHHTTGG
T ss_pred eecccccchHHHHHHHHhhcc
Confidence 999999999999999988765
No 47
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.7e-23 Score=145.97 Aligned_cols=157 Identities=15% Similarity=0.023 Sum_probs=98.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
..+|+++|.+|+|||||+++|++........+..+.+....... ....+.+|||||.... ..+...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHhc
Confidence 46899999999999999999998731111111111111111111 1246899999997432 22233333
Q ss_pred hcccccceEEEEEeCCCCCC-cCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCCCCc
Q 029158 99 STRVSLKRVCLLIDTKWGVK-PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~v 171 (198)
.. +|++++|+|+++... .....++..+.. .+.|+++|+||+|+....+... ....+.... +.++
T Consensus 73 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~ 143 (172)
T 2erx_A 73 SK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW------KCAF 143 (172)
T ss_dssp HH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH------TCEE
T ss_pred cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh------CCeE
Confidence 33 899999999986322 122334444443 2689999999999975432211 111111111 3689
Q ss_pred EEeccCCCCChHHHHHHHHHhhccc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
+++||++|.|+++++++|.+.+...
T Consensus 144 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 144 METSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp EECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred EEecCCCCcCHHHHHHHHHHHHhhh
Confidence 9999999999999999999877643
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.91 E-value=1.5e-23 Score=147.33 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=100.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
+...+|+++|.+|+|||||+++|++........+..+.+........ ...+.+|||||.... .....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~ 82 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTR 82 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHH
Confidence 34679999999999999999999987422212222222222222222 357899999995321 22233
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....... .+..++.... .+.++
T Consensus 83 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~ 154 (179)
T 1z0f_A 83 SYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAEE---NGLLF 154 (179)
T ss_dssp HHHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHH---TTCEE
T ss_pred HHhcc---CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEE
Confidence 34433 899999999987422222 234444443 468999999999996532211 1122222221 24789
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++++|+++++++|.+.+.
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 155 LEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 49
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=5e-24 Score=151.17 Aligned_cols=161 Identities=27% Similarity=0.298 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
..++|+++|++|+|||||+++|++.. .....++++|.+.. +...+..+.+|||||......... ...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----~~~~~~~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARD 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH----HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH----HHHHHHH
Confidence 45789999999999999999999874 34555666665533 222367899999999754321111 1222333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEecc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
++.. ..+|++++|+|+++ ......++..+...+.|+++|+||+|+............+.+.+ +.+++++||
T Consensus 80 ~~~~-~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~Sa 150 (188)
T 2wjg_A 80 YIIN-EKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL------GVKVVPLSA 150 (188)
T ss_dssp HHHH-HCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------TSCEEECBG
T ss_pred HHhc-cCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHh------CCCeEEEEe
Confidence 4332 23789999999975 22334455666666899999999999864322111122222222 368999999
Q ss_pred CCCCChHHHHHHHHHhhcc
Q 029158 177 KSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~~~ 195 (198)
++++|+++++++|.+.+..
T Consensus 151 ~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=2.5e-23 Score=149.06 Aligned_cols=163 Identities=21% Similarity=0.159 Sum_probs=96.4
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
.+.....+|+++|.+|+|||||+++|++........+..+.+....... ....+.+|||||.... ..
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~ 92 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF----------RS 92 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC----------HH
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch----------hh
Confidence 3445678999999999999999999998742222222222222222122 2356999999996432 22
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHH---HH-HHHHHHHHHhc
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVA---RR-AMQIEESLKAN 164 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~---~~-~~~~~~~~~~~ 164 (198)
....++.. +|++++|+|+++...... ..++..+... +.|+++|+||+|+......+ .. .+..++.....
T Consensus 93 ~~~~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 93 IAKSYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp HHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred hHHHHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 23333333 899999999986332222 2344444432 68999999999996321100 00 01111111111
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+.+++++||++|+|+++++++|.+.+.
T Consensus 170 ---~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 170 ---GALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp ---TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ---CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988764
No 51
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.91 E-value=9e-24 Score=147.97 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=95.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+++|++.. .....+..+++........ ...+.+|||||..... ...+...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~ 73 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQES 73 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCC-CccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhHHh
Confidence 35789999999999999999999873 3333333444432222222 2468999999963210 1112222
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh----CCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (198)
++ ..+|++++|+|.++...... ..++..+... +.|+++|+||+|+....... +....+... .+.+
T Consensus 74 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~------~~~~ 144 (175)
T 2nzj_A 74 CL---QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV------FDCK 144 (175)
T ss_dssp TT---TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH------HTSE
T ss_pred hc---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH------cCCe
Confidence 22 34899999999976321111 2344444432 68999999999997643211 111111111 1368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhcc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++++||++|+|+++++++|.+.+..
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887643
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.91 E-value=2.9e-23 Score=147.61 Aligned_cols=158 Identities=19% Similarity=0.114 Sum_probs=99.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEe------------CCceEEEeCCCCccccchh
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKL------------GTKLCLVDLPGYGFAYAKE 84 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~------------~~~~~iiDtpG~~~~~~~~ 84 (198)
.....+|+++|.+|+|||||+++|++........+..+.+.. ...... ...+.+|||||....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---- 83 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---- 83 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG----
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH----
Confidence 345679999999999999999999987321111111111111 111111 237999999997321
Q ss_pred HHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHH-HHHHHHHH
Q 029158 85 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDV-ARRAMQIE 158 (198)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~ 158 (198)
......+ ...+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+...... .+....+.
T Consensus 84 ------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 154 (195)
T 3bc1_A 84 ------RSLTTAF---FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA 154 (195)
T ss_dssp ------HHHHHHT---TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ------HHHHHHH---HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 2223333 344899999999986432222 344454443 36899999999999753221 11111222
Q ss_pred HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+.. +.+++++||+++.|+++++++|.+.+.
T Consensus 155 ~~~------~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 155 EKY------GIPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHH------TCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHc------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111 368999999999999999999987653
No 53
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.91 E-value=3.3e-23 Score=148.92 Aligned_cols=156 Identities=14% Similarity=0.068 Sum_probs=101.5
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHH
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAW 90 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~ 90 (198)
.++...++|+++|.+|+|||||+++|++.. ....+.+++.... .... ...+.+|||||....
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------- 75 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---------- 75 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------
Confidence 345567899999999999999999999873 2334444443321 1122 247899999996432
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHh
Q 029158 91 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKA 163 (198)
Q Consensus 91 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~ 163 (198)
......++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+..... .++......+
T Consensus 76 ~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---- 148 (206)
T 2bov_A 76 AAIRDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ---- 148 (206)
T ss_dssp HHHHHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----
T ss_pred HHHHHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH----
Confidence 2233344443 899999999986321111 233333433 2689999999999976432 2222222211
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 164 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
. +.+++++||++|.|+++++++|.+.+.
T Consensus 149 ~---~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 149 W---NVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp H---TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred h---CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 368999999999999999999988764
No 54
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=1.5e-23 Score=147.76 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+|||||+++|++...........+.+....... ....+.+|||||.... .....
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 79 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAP 79 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhH
Confidence 3457899999999999999999998742111111112222222111 2357999999996321 12222
Q ss_pred HHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.++. .+|++++|+|+++... .....++..+... +.|+++|+||+|+....... .+..++.... .+.++
T Consensus 80 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~ 151 (181)
T 2efe_B 80 MYYR---GAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT--AEDAQTYAQE---NGLFF 151 (181)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHHH---TTCEE
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC--HHHHHHHHHH---cCCEE
Confidence 3333 3899999999986322 1123445555443 68899999999997543211 1112222211 14689
Q ss_pred EEeccCCCCChHHHHHHHHHhhcc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+++||++|+|+++++++|.+.+..
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 152 METSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp EECCSSSCTTHHHHHHHHHHTCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987754
No 55
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=1.8e-24 Score=155.06 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
...+|+++|++|+|||||++++.+.. .....+..+.+. ..+...+..+.+|||||.... ..+...++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~- 90 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTS-EELTIAGMTFTTFDLGGHIQA----------RRVWKNYL- 90 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETTEEEEEEEECC--------------CCGGGGGG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC-CCccCCCCCcee-EEEEECCEEEEEEECCCcHhh----------HHHHHHHH-
Confidence 45689999999999999999999873 332222222222 122233578999999996321 11122233
Q ss_pred cccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH----------Hhc
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESL----------KAN 164 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~ 164 (198)
..+|++++|+|+++...-.. ..++..+. ..+.|+++|+||+|+......++..+.+.... ...
T Consensus 91 --~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 91 --PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp --GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 34899999999986321111 22333332 23789999999999976433322222221100 000
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.....+++++||++|+|+++++++|.+.+
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 11346799999999999999999998765
No 56
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.3e-23 Score=146.57 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++.. .......+.++.+.. .... ...+.+|||||... +...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~ 76 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSV 76 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC-CCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHH
Confidence 456789999999999999999999873 221122232333322 1122 24789999999622 1222
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV 168 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 168 (198)
. ......+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....... +....+.+.. +
T Consensus 77 ~---~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~ 147 (180)
T 2g6b_A 77 T---HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY------G 147 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH------T
T ss_pred H---HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc------C
Confidence 2 233345899999999986322222 234444443 468999999999998643211 1111222211 4
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+++++||+++.|+++++++|.+.+..
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887653
No 57
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.91 E-value=6e-24 Score=151.05 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+|||||+++|++........+..+++....... ....+.+|||||..... ....
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 89 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR----------TITT 89 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC----------CSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh----------hhHH
Confidence 3457999999999999999999998742222222222222222112 23578999999964321 1111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (198)
.+ ...+|++++|+|+++...... ..++..+... +.|+++|+||+|+...... .+....+.+.. +.+
T Consensus 90 ~~---~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~ 160 (189)
T 2gf9_A 90 AY---YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL------GFE 160 (189)
T ss_dssp GG---GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------TCE
T ss_pred Hh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc------CCe
Confidence 22 234899999999976322222 3345555543 6899999999999754321 11112222221 368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 161 FFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 58
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=2.3e-24 Score=165.89 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=109.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--Ee--CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.++|+++|.+|+|||||+++|++.. ..+.+++.+|...... .. ...+.+|||||+.+.... +..+...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~------~~~l~~~ 229 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ------GVGLGHQ 229 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC------TTTTHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc------cchhHHH
Confidence 3579999999999999999999874 4567787777654422 22 267999999997432111 0122334
Q ss_pred HHhcccccceEEEEEeCCCC---CCcCc-HHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWG---VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~---~~~~~-~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
|+.....+|++++|+|+++. -...+ ..++..+.. .++|+++|+||+|+....+ ..+.+.+.+. .
T Consensus 230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l~----~ 302 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKLT----D 302 (342)
T ss_dssp HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHCC----S
T ss_pred HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHhh----c
Confidence 55555569999999999752 11111 234455554 3689999999999986432 1222332221 1
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
..+++++||++++|+++++++|.+.+...
T Consensus 303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 303 DYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 26899999999999999999999887643
No 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=1.8e-23 Score=148.63 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||+++|++.. ....+.+++.... .... ...+.+|||||... +....
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 86 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMR 86 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCC---CccccCCccceEEEEEEEECCEEEEEEEEECCChHH----------HHHHH
Confidence 34689999999999999999999873 2233333333221 1111 24589999999522 12222
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
..++ ..+|++++|+|+.......+ ..++..+.. .+.|+++|+||+|+.......+....+.+.. +.
T Consensus 87 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~ 157 (190)
T 3con_A 87 DQYM---RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY------GI 157 (190)
T ss_dssp ---C---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH------TC
T ss_pred HHhh---CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc------CC
Confidence 3333 34899999999986322112 223333433 2689999999999976321111112222221 36
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
+++++||+++.|+++++++|.+.+...
T Consensus 158 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 158 PFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999877543
No 60
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=148.30 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=101.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++... .....+.++.+.. .... ...+.+|||||.... ...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~ 81 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTI 81 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhh
Confidence 3457999999999999999999998742 1222233333322 2222 257999999996322 122
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
...++.. +|++++|+|+++...... ..++..+... +.|+++|+||+|+........ ...++.... .+.
T Consensus 82 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~ 153 (196)
T 3tkl_A 82 TSSYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFADS---LGI 153 (196)
T ss_dssp HHHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTC
T ss_pred HHHHHhh---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH--HHHHHHHHH---cCC
Confidence 2334433 899999999986322111 3344445433 689999999999976532211 111111111 147
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+++++||++|.|+++++++|.+.+..
T Consensus 154 ~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 154 PFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887643
No 61
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=3.9e-23 Score=164.67 Aligned_cols=171 Identities=25% Similarity=0.308 Sum_probs=113.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchh-HHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELV 94 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~-~~~~~~~~~~ 94 (198)
...++|+++|++|+|||||+|+|++. ....+++.+++|.+.. +...+..+.+|||||+....... ...+.+..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~-- 254 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN-- 254 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCC--
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHH--
Confidence 35689999999999999999999998 4566788888887643 33346679999999973211000 00000000
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCCCcE
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
.........+|++++++|+..+....+.++...+...++|+++|+||+|+..... .++....+.+.+... ...+++
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 332 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI--DYSPLI 332 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG--TTSCEE
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC--CCCcEE
Confidence 0011122338999999999987776666677777777899999999999986543 333434444433322 257899
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|.|++++++.+.+.+.
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 62
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=6.8e-24 Score=149.78 Aligned_cols=160 Identities=17% Similarity=0.107 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....+|+++|++|+|||||++++++.. .....+..+... ..+...+..+.+|||||.... .... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~---~ 80 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE-VVTTKPTIGFNV-ETLSYKNLKLNVWDLGGQTSI----------RPYW---R 80 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE-EEEECSSTTCCE-EEEEETTEEEEEEEEC----C----------CTTG---G
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC-cCccCCcCccce-EEEEECCEEEEEEECCCCHhH----------HHHH---H
Confidence 567899999999999999999999873 333333333222 122223678999999996331 1111 1
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
.....+|++++|+|+++...... ..++..+. ..+.|+++|+||+|+......++..+.+.. ........++++
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~--~~~~~~~~~~~~ 158 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNL--VELKDRSWSIVA 158 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTT--TTCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCc--ccccCCceEEEE
Confidence 22345899999999986422221 22333333 246899999999999865433322222111 111122457999
Q ss_pred eccCCCCChHHHHHHHHHhhcc
Q 029158 174 VSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+||++|+|+++++++|.+.+..
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 159 SSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 63
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=4.9e-24 Score=148.48 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=97.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
.+|+++|++|+|||||+++|++........+..+.+........ ...+.+|||||.... ......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhh
Confidence 57999999999999999999987421112222222222222222 347999999996321 12233344
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcH---HH-HHHHHHHHHHHHhccCCCCC
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI---DV-ARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~---~~-~~~~~~~~~~~~~~~~~~~~ 170 (198)
. .+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+.... .. .+....+.+. .+.+
T Consensus 74 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------~~~~ 144 (170)
T 1ek0_A 74 R---NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE------KGLL 144 (170)
T ss_dssp T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH------HTCE
T ss_pred c---cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH------cCCE
Confidence 3 3899999999986322111 233444433 268999999999997541 11 1111122111 1368
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|+++++++|.+.+.
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 145 FFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTSC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.90 E-value=1.6e-23 Score=148.40 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=99.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||+++|++.. ....+.+++.+.. .... ...+.+|||||.... ..+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMR 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH----------HHHH
Confidence 35689999999999999999999873 2334444443322 1111 245788999996331 2223
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
..++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+.......+....+.+.. +.
T Consensus 70 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------~~ 140 (189)
T 4dsu_A 70 DQYMRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY------GI 140 (189)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH------TC
T ss_pred HHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc------CC
Confidence 333333 899999999986321111 223333333 3689999999999975432222233333322 37
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++++||++|+|+++++++|.+.+.
T Consensus 141 ~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 141 PFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999988764
No 65
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.90 E-value=9.9e-24 Score=164.18 Aligned_cols=147 Identities=17% Similarity=0.240 Sum_probs=110.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE---EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
+|+++|.+++|||||+++|+.. ++|.+..+. ..+..+.+|||||+.+ +...+..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~-------------f~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPK-------------TLKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTT-------------CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHH-------------HHHHHHH
Confidence 8999999999999999999821 233332222 2357899999999732 2333444
Q ss_pred cccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcE-EEEEe-ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE--ec
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT-KTDTVFPIDVARRAMQIEESLKANNSLVQPVMM--VS 175 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~S 175 (198)
....+|++++|+| ..+......+++..+...+.|. ++++| |+|+ +....++..+++++.+........++++ +|
T Consensus 80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 4456999999999 8777777788888888888898 99999 9999 6554455555666655443333578999 99
Q ss_pred cCC---CCChHHHHHHHHHhhc
Q 029158 176 SKS---GAGIRSLRTVLSKIAR 194 (198)
Q Consensus 176 a~~---~~gi~~l~~~i~~~~~ 194 (198)
|++ ++|+++++++|.+.+.
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhcc
Confidence 999 9999999999988764
No 66
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=3.4e-23 Score=150.12 Aligned_cols=158 Identities=12% Similarity=0.049 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE---eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++... ...+.+++.... ... ....+.+|||||... +...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~ 98 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAF---PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD----------YDRL 98 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCccceeEEEEEEECCEEEEEEEEECCCchh----------hhHH
Confidence 4567999999999999999999998731 222333332211 111 134689999999522 1222
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEE 159 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~ 159 (198)
...++. .+|++++|+|+++....... .++..+... +.|+++|+||+|+.......+.. +...+
T Consensus 99 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 99 RPLFYP---DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence 333333 48999999999863221121 344444443 68999999999998765432221 11122
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..... ...+++++||++|.|+++++++|.+.+.
T Consensus 176 ~~~~~--~~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 176 MARSV--GAVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp HHHHT--TCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 22111 1238999999999999999999988764
No 67
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.90 E-value=1.4e-23 Score=146.27 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=100.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|.+|+|||||+++|++........+..+++........ ...+.+|||||+... ......+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhh
Confidence 468999999999999999999987422222333333332222222 357899999997321 1222233
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+.. +|++++|+|+++...... ..++..+... ..|+++|+||+|+....+... +..++.... ...++++
T Consensus 76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~~~ 147 (170)
T 1z0j_A 76 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME--RDAKDYADS---IHAIFVE 147 (170)
T ss_dssp HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCEEEE
T ss_pred CcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCH--HHHHHHHHH---cCCEEEE
Confidence 333 899999999986322222 2344555433 578999999999976432111 111111111 1478999
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||+++.|+++++++|.+.+.
T Consensus 148 ~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 148 TSAKNAININELFIEISRRIP 168 (170)
T ss_dssp CBTTTTBSHHHHHHHHHHHCC
T ss_pred EeCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999988764
No 68
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.90 E-value=1.5e-23 Score=146.15 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=95.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..+|+++|++|+|||||+++|++.... ....+.++.+.. .... ...+.+|||||.... .....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~ 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN--PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTITT 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC--C-------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh----------hhhHH
Confidence 468999999999999999999987321 111222222221 1222 246899999996331 11122
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.++. .+|++++|+|+++...... ..++..+... +.|+++|+||+|+.......+....+.+.. +.++
T Consensus 71 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~ 141 (170)
T 1g16_A 71 AYYR---GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL------GIPF 141 (170)
T ss_dssp HHHT---TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH------TCCE
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc------CCeE
Confidence 3333 3899999999986322222 2344444432 689999999999954221112122222221 3689
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|.|+++++++|.+.+.
T Consensus 142 ~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 142 IESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 69
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=5.3e-23 Score=142.85 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=97.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe--CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..+|+++|.+|+|||||+++|++.. ....+.+++.... +... ...+.+|||||.... .....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~ 70 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc---cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------HHHHH
Confidence 4689999999999999999999873 2233333332221 1111 247899999996321 23333
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLV 168 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 168 (198)
.++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....+ .++.....+. . +
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~---~ 140 (168)
T 1u8z_A 71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ----W---N 140 (168)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH----H---T
T ss_pred HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH----c---C
Confidence 44443 899999999986321111 223333332 2689999999999975432 1222222211 1 3
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+++++||++|.|+++++++|.+.+.
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 141 VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988764
No 70
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.90 E-value=1.5e-23 Score=145.51 Aligned_cols=152 Identities=15% Similarity=0.108 Sum_probs=97.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..+|+++|++|+|||||++++++... ...+.+++.+. ..... ...+.+|||||.... ..+..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~ 69 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRD 69 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC---cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh----------HHHHH
Confidence 36899999999999999999998732 22233333221 11111 245899999996432 22233
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (198)
.++.. +|++++|+|+.+...... ..++..+.. .+.|+++|+||+|+....+.. .....+.+.. +.
T Consensus 70 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~ 140 (167)
T 1kao_A 70 LYIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW------GC 140 (167)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH------TS
T ss_pred HHhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh------CC
Confidence 33333 899999999986321111 223333322 369999999999997543211 1111222111 46
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++++||++|.|+++++++|.+.+.
T Consensus 141 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 141 PFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCcCHHHHHHHHHHHHh
Confidence 8999999999999999999988765
No 71
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.2e-23 Score=150.01 Aligned_cols=159 Identities=15% Similarity=0.075 Sum_probs=102.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+|||||+++|++........+..+++....... ....+.+|||||.... .....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 90 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAP 90 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhH
Confidence 4467999999999999999999998742222333344443332222 2357999999996321 12222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.++. .+|++++|+|+++...... ..++..+... +.|+++|+||+|+....... .+..++.... .+.++
T Consensus 91 ~~~~---~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~~---~~~~~ 162 (192)
T 2fg5_A 91 MYYR---GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAES---IGAIV 162 (192)
T ss_dssp HHHT---TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHT---TTCEE
T ss_pred Hhhc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHH---cCCEE
Confidence 3333 3899999999986322111 2344444443 68999999999997432110 1122222221 24789
Q ss_pred EEeccCCCCChHHHHHHHHHhhcc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+++||+++.|+++++++|.+.+..
T Consensus 163 ~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 163 VETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp EECBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999987653
No 72
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.90 E-value=2.7e-23 Score=144.41 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=97.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..+|+++|.+|+|||||+++|++.. ....+.+++.... .... ...+.+|||||.... ..+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~ 69 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF----------TAMRD 69 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC---CCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS----------TTHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHH----------HHHHH
Confidence 3689999999999999999999873 1223333332211 1111 246899999996432 12222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
.++.. +|++++|+|+.+...... ..++..+.. .+.|+++|+||+|+....... .+..++..... ...+
T Consensus 70 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~ 142 (167)
T 1c1y_A 70 LYMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG--KEQGQNLARQW--CNCA 142 (167)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHT--TSCE
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC--HHHHHHHHHHc--cCCc
Confidence 33333 899999999986321112 233433332 379999999999997543211 11122221111 1478
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|+++++++|.+.+.
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 143 FLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999988763
No 73
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.90 E-value=3.3e-24 Score=152.34 Aligned_cols=160 Identities=18% Similarity=0.084 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 98 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~ 98 (198)
....+|+++|.+|+|||||++++++.. .....+..+.+. ..+...+..+.+|||||...... ...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~Dt~G~~~~~~----------~~~--- 84 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGD-VVTTVPTVGVNL-ETLQYKNISFEVWDLGGQTGVRP----------YWR--- 84 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSC-CEEECSSTTCCE-EEEEETTEEEEEEEECCSSSSCC----------CCS---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCC-CCCcCCCCceEE-EEEEECCEEEEEEECCCCHhHHH----------HHH---
Confidence 457899999999999999999998873 232222222111 12222367899999999743210 011
Q ss_pred hcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 99 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 99 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
.....+|++++|+|+++...-.. ..++..+ .. .+.|+++|+||+|+......++....+.. ........++++
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 162 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGV--SSIMNRTWTIVK 162 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTG--GGCCSSCEEEEE
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhCh--hhccCCceEEEE
Confidence 12235899999999986422221 2233333 22 36899999999999876433332222211 111223457999
Q ss_pred eccCCCCChHHHHHHHHHhhcc
Q 029158 174 VSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+||++++|+++++++|.+.+..
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCCccCHHHHHHHHHHHHHh
Confidence 9999999999999999987754
No 74
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=149.58 Aligned_cols=157 Identities=16% Similarity=0.148 Sum_probs=99.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe-C--CceEEEeCCCCccccchhHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~-~--~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
....++|+++|.+|+|||||+++|++.. .. ....+.++.+.. .... + ..+.+|||||.... ..
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~ 73 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNT-FS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF----------RT 73 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC----------SS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCC-CC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh----------hh
Confidence 3456899999999999999999999874 22 233333333322 2222 2 57999999995321 11
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLV 168 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 168 (198)
....+ ...+|++++|+|+++...... ..++..+... +.|+++|+||+|+....... .....+.... +
T Consensus 74 ~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~ 144 (181)
T 3tw8_B 74 ITSTY---YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM------G 144 (181)
T ss_dssp CCGGG---GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH------T
T ss_pred hHHHH---hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc------C
Confidence 11122 234899999999986322111 2244444433 58999999999987543211 1111111111 4
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+++++||++|+|+++++++|.+.+..
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999887643
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.90 E-value=2.1e-23 Score=148.76 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC-------CCCceeEEEEEEe--------CCceEEEeCCCCccccch
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-------~~~~t~~~~~~~~--------~~~~~iiDtpG~~~~~~~ 83 (198)
....+|+++|.+|+|||||++.+.+.. .....+ ...+|....+... ...+.+|||||...-
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--- 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY--- 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH---
Confidence 456799999999999999998887652 111111 0112333332221 236899999996432
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHH----HHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHH
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE----LISLMER-----SQTKYQVVLTKTDTVFPIDVARRA 154 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~ 154 (198)
......++. .+|++++|+|++.+....+.+ +..++.. .+.|+++|+||+|+......++
T Consensus 88 -------~~~~~~~~~---~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~-- 155 (198)
T 3t1o_A 88 -------NASRKLILR---GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEM-- 155 (198)
T ss_dssp -------SHHHHHHTT---TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHH--
T ss_pred -------HHHHHHHHh---cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHH--
Confidence 222333443 389999999998432222222 2233332 3789999999999987533322
Q ss_pred HHHHHHHHhccCCCC-CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 155 MQIEESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 155 ~~~~~~~~~~~~~~~-~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++... ..+. +++++||++|+|+++++++|.+.+.
T Consensus 156 --~~~~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 156 --VRAVVD---PEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp --HHHHHC---TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred --HHHHHH---hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 222222 2245 8999999999999999999988654
No 76
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.90 E-value=4.4e-23 Score=145.84 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe--CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++.. ....+.+++.... +... ...+.+|||||.... ..+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 82 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAI 82 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----------HHH
Confidence 345799999999999999999999873 2333444433221 1111 247899999996432 223
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
...++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....... .+.+++.... .+
T Consensus 83 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~ 154 (187)
T 2a9k_A 83 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQ---WN 154 (187)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHHH---TT
T ss_pred HHHHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHHHHHHH---cC
Confidence 3334433 899999999986321111 223333332 268999999999997542211 1122222221 14
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+++++||+++.|+++++++|.+.+..
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 155 VNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887643
No 77
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=7.5e-23 Score=146.89 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=99.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+++|++........+..+.+....... ....+.+|||||.... ......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 76 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY----------RTITTA 76 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh----------cchHHH
Confidence 457899999999999999999998742222222222222222222 1357899999997321 222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh---hCCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v 171 (198)
++ ..+|++++|+|+++..... ...++..+.. .+.|+++|+||+|+...... .+....+.+.. +.++
T Consensus 77 ~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~ 147 (203)
T 1zbd_A 77 YY---RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL------GFEF 147 (203)
T ss_dssp TG---GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH------TCEE
T ss_pred hh---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC------CCeE
Confidence 33 3489999999998632211 1234444444 36899999999999764321 11112222221 3689
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|.|+++++++|.+.+.
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 148 FEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp EECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 78
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.90 E-value=3.6e-23 Score=145.30 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=98.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||+++|++... . ....+.++.+.. .... ...+.+|||||.... ....
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~ 80 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSF-D-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLI 80 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHH
Confidence 347899999999999999999997631 1 122222232222 1112 247999999996331 1122
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh---hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhccCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLV 168 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 168 (198)
..++. .+|++++|+|+++..... ...++..+.. .+.|+++|+||+|+...... ++....... . +
T Consensus 81 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~---~ 150 (179)
T 2y8e_A 81 PSYIR---DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE----L---N 150 (179)
T ss_dssp HHHHH---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH----H---T
T ss_pred HHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHH----c---C
Confidence 23333 389999999997632211 1234444432 36899999999999754321 121111111 1 4
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+++++||+++.|+++++++|.+.+..
T Consensus 151 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 151 VMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999999999987754
No 79
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.90 E-value=2.7e-23 Score=146.33 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=93.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
.....+|+++|.+|+|||||+++|++........+..+.+........ ...+.+|||||... +..
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~- 73 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQS- 73 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH----------hhh-
Confidence 345679999999999999999999987311111111111111111111 24689999999521 122
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 165 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 165 (198)
........+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....... ..+..++....
T Consensus 74 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v-~~~~~~~~~~~-- 148 (182)
T 1ky3_A 74 --LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV-SEKSAQELAKS-- 148 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS-CHHHHHHHHHH--
T ss_pred --hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC-CHHHHHHHHHh--
Confidence 22233445899999999986322222 233433332 468999999999996432100 00111111111
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 166 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
....+++++||++|+|+++++++|.+.+.
T Consensus 149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 149 LGDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 22578999999999999999999987653
No 80
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=3.4e-24 Score=168.93 Aligned_cols=163 Identities=25% Similarity=0.284 Sum_probs=107.0
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCC-ceEEEeCCCCccccchhHHHHHHH
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~-~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
.+....++|+++|.+|+|||||+++|++. ........+++|.+..... .+. .+.+|||||+.+........ .
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~---~ 104 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLR---V 104 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCC---H
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHH---H
Confidence 45567889999999999999999999998 4445667777776643222 233 79999999986421110000 0
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.....++ ..+|++++|+|+ +....+..++..+...+.|+++|+||+|+...... ...+.+. ...+.++
T Consensus 105 ~~~~~~l---~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-----~~~~~l~--~~~g~~v 172 (423)
T 3qq5_A 105 EKARRVF---YRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-----ELKGLYE--SRYEAKV 172 (423)
T ss_dssp HHHHHHH---TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-----HHHHHSS--CCTTCCC
T ss_pred HHHHHHH---hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-----HHHHHHH--HHcCCCE
Confidence 1112233 348999999999 45677788888888889999999999999876543 1111111 1235799
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|+|+++++++|.+.++
T Consensus 173 ~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 173 LLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCCSSCCTTSTTTHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999998873
No 81
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.90 E-value=5.8e-24 Score=151.73 Aligned_cols=158 Identities=13% Similarity=-0.038 Sum_probs=99.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++.. ....+.+++... .+.. ....+.+|||||.... ...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~ 87 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGE---IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY----------DRL 87 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCC---CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH----------HHH
Confidence 345799999999999999999999874 223333333221 1111 2345799999995321 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
. ......+|++++|+|+++...... ..++..+... +.|+++|+||+|+..........+..++..... +.
T Consensus 88 ~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 161 (194)
T 3reg_A 88 R---PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---GC 161 (194)
T ss_dssp G---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH---TC
T ss_pred h---HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc---CC
Confidence 1 122334899999999986322222 2344555544 689999999999975321111111222222211 34
Q ss_pred C-cEEeccCCCCChHHHHHHHHHhhcc
Q 029158 170 P-VMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 170 ~-v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+ ++++||++|+|+++++++|.+.+..
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 5 9999999999999999999887643
No 82
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=3.8e-23 Score=149.35 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=98.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe-C--CceEEEeCCCCccccchhHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~-~--~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
+....++|+++|.+|+|||||+++|++.... ....+.++.+. ..... + ..+.+|||||.... .
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~ 83 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFN--PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF----------R 83 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCC--CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------T
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------H
Confidence 3445789999999999999999999987321 12222222222 12222 2 57999999996321 1
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
.....++. .+|++++|+|+........ ..++..+... +.|+++|+||+|+.......+....+.+..
T Consensus 84 ~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------ 154 (213)
T 3cph_A 84 TITTAYYR---GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL------ 154 (213)
T ss_dssp CCCHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH------
T ss_pred HHHHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc------
Confidence 11223333 3899999999986322112 2344444432 689999999999953221111122222221
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+.+++++||+++.|+++++++|.+.+.
T Consensus 155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 155 GIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp TCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999987654
No 83
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=3.6e-23 Score=144.07 Aligned_cols=157 Identities=14% Similarity=0.062 Sum_probs=99.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+++|++........+..+++....... .+..+.+|||||.... ......
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~ 74 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPM 74 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHH
Confidence 346899999999999999999998632221222222222222222 2457899999996331 122233
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
++. .+|++++|+|+++...... ..++..+... +.|+++|+||+|+....... .+..++.... .+.+++
T Consensus 75 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~ 146 (170)
T 1r2q_A 75 YYR---GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD--FQEAQSYADD---NSLLFM 146 (170)
T ss_dssp HHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCEEE
T ss_pred hcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC--HHHHHHHHHH---cCCeEE
Confidence 333 3899999999986322111 2334444432 68999999999996532211 0111111111 247899
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||++|+|+++++++|.+.+.
T Consensus 147 ~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 147 ETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHHTSC
T ss_pred EEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1e-22 Score=145.58 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++... ...+.++... ..... ....+.+|||||.... ..+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 72 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTF---RDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF----------PAM 72 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCC---CCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC----------HHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCC---CCcccCccccceeEEEEECCEEEEEEEEeCCChHHh----------HHH
Confidence 4568999999999999999999998732 1112222111 11111 1347899999996432 222
Q ss_pred HHHHHhcccccceEEEEEeCCCCCC-cCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
...++.. +|++++|+|+++... .....++..+.. .+.|+++|+||+|+.......+....+....
T Consensus 73 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------ 143 (199)
T 2gf0_A 73 QRLSISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW------ 143 (199)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH------
T ss_pred HHHhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh------
Confidence 3333333 899999999986321 112233433332 2689999999999975321111112222111
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+++++||++|+|+++++++|.+.+..
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 144 KCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 3689999999999999999999987643
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.90 E-value=8.8e-23 Score=141.38 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=97.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
.+|+++|.+|+|||||++++++.. ....+.+++... .+.. ....+.+|||||.... ......
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~ 70 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH---FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRDQ 70 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC----------CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc---CccccCCccceEEEEEEEECCEEEEEEEEECCCchhh----------hHHHHH
Confidence 579999999999999999999873 122233333221 1111 1345899999996432 122223
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
++.. +|++++++|+++...... ..++..+... +.|+++|+||+|+.......+....+.+.. +.++
T Consensus 71 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~ 141 (166)
T 2ce2_X 71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSY------GIPY 141 (166)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH------TCCE
T ss_pred hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHc------CCeE
Confidence 3333 899999999975321111 2334444332 699999999999976322222222222221 3689
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|.|+++++++|.+.+.
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 142 IETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.90 E-value=2.4e-23 Score=148.20 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=98.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 99 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~ 99 (198)
...+|+++|++|+|||||++++++.. .....+..+.+. ..+...+..+.+|||||.... ......+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~-- 87 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDR-LATLQPTWHPTS-EELAIGNIKFTTFDLGGHIQA----------RRLWKDY-- 87 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSC-CCCCCCCCSCEE-EEEEETTEEEEEEECCCSGGG----------TTSGGGG--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCccccCCCCCe-EEEEECCEEEEEEECCCCHHH----------HHHHHHH--
Confidence 45689999999999999999999873 332222222221 223333578999999997432 1111122
Q ss_pred cccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhc---------c
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN---------N 165 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~ 165 (198)
...+|++++|+|+++..+-.. ..++..+. ..+.|+++|+||+|+......++ +++.+... .
T Consensus 88 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 88 -FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE----LRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp -CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH----HHHHTTCSSCCC---CCS
T ss_pred -HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHH----HHHHhCCccccccccccc
Confidence 235899999999986422111 22333332 24689999999999986433222 22222211 1
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 166 SLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
....+++++||++|+|+++++++|.+.
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 234679999999999999999999865
No 87
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.90 E-value=1.4e-23 Score=147.63 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=101.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
++...++|+++|.+|+|||||+++|++.. ....+.+++.... .... ...+.+|||||.... .
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~ 71 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF----------G 71 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT----------S
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhh----------H
Confidence 44567899999999999999999999873 2344444443321 1122 247899999996432 1
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHH-H---hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 166 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
.+...++.. +|++++|+|+++...... ..++..+ . ..+.|+++|+||+|+........ +...+....
T Consensus 72 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~--- 143 (181)
T 2fn4_A 72 AMREQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR--SEASAFGAS--- 143 (181)
T ss_dssp CCHHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH--HHHHHHHHH---
T ss_pred HHHHHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHHHHHHHH---
Confidence 112233333 899999999986211111 2233333 2 23689999999999976432211 111111111
Q ss_pred CCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 167 LVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+.+++++||++|+|+++++++|.+.+..
T Consensus 144 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 144 HHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 14789999999999999999999887643
No 88
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.90 E-value=3.8e-23 Score=144.09 Aligned_cols=155 Identities=15% Similarity=0.055 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||++++++.... ....+..+.+. ..... ...+.+|||||.... ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~-- 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFN--DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF----------HA-- 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCC--SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC--cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh----------hh--
Confidence 4578999999999999999999987311 11112222221 11222 246899999995221 11
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
........+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....... .+..++.... .+.+
T Consensus 71 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~ 144 (170)
T 1z08_A 71 -LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS--IQEAESYAES---VGAK 144 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCE
T ss_pred -hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC--HHHHHHHHHH---cCCe
Confidence 11223345899999999986322111 223333432 468999999999997542211 0111222221 1478
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|+++++++|.+.+.
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 89
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.90 E-value=5.2e-23 Score=149.14 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=96.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EE---EEEE--eCCceEEEeCCCCccccchhHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
|....+|+++|.+|+|||||+++++.... ...+.+|.. +. .... ....+.+|||+|...- .
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f---~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~----------~ 76 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF---DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF----------R 76 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCC---C----------CEEEEEECSSCEEEEEEECCSCTTTC----------G
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCC---CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhh----------h
Confidence 33567999999999999999999998742 222222211 11 1111 1356889999996321 3
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhcc
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANN 165 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~ 165 (198)
.+...|+.. ++++++|+|.....+-.. ..++..+.. .+.|+++|+||+|+..... .++. ..+.+..
T Consensus 77 ~l~~~~~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~-~~~a~~~---- 148 (216)
T 4dkx_A 77 SLIPSYIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEG-ERKAKEL---- 148 (216)
T ss_dssp GGHHHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHH-HHHHHHH----
T ss_pred hHHHHHhcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHH-hhHHHHh----
Confidence 344455554 899999999986322222 234444432 3689999999999976432 1221 1222221
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 166 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++++++||++|+|++++|+.|.+.+.
T Consensus 149 --~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 149 --NVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp --TCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred --CCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 478999999999999999999987664
No 90
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.90 E-value=1.9e-23 Score=150.34 Aligned_cols=157 Identities=14% Similarity=0.009 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeC--CceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||++++++.. ....+.+++.+.. +...+ ..+.+|||||.... ...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~ 94 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRL 94 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSC---CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG----------TTT
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCC---CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh----------HHH
Confidence 456799999999999999999999763 2333444443322 11122 35669999997321 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEE 159 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~ 159 (198)
. ......+|++++|+|+++....... .++..+... +.|+++|+||+|+.......+.. +...+
T Consensus 95 ~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 95 R---PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp G---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred H---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 1 1223458999999999863322222 355555554 79999999999998765432221 11111
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
..... ...+++++||++|+|+++++++|.+.+
T Consensus 172 ~~~~~--~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAKEI--GAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHT--TCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHhc--CCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 21111 124699999999999999999998754
No 91
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.7e-23 Score=149.22 Aligned_cols=158 Identities=12% Similarity=0.019 Sum_probs=100.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeC--CceEEEeCCCCccccchhHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
+....+|+++|.+|+|||||+++|++.. ....+.+++.+. .+...+ ..+.+|||||.... ..
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~ 81 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DR 81 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSS----------TT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcch----------hH
Confidence 3456799999999999999999999873 223333333221 121122 56899999997432 11
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH----------HHHHH
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIE 158 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~ 158 (198)
.... ....+|++++|+|+++...... ..++..+... +.|+++|+||+|+......... .+...
T Consensus 82 ~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 82 LRPL---SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp TGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred HHHH---hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 1112 2334899999999986322112 2355556554 7999999999999875422110 11111
Q ss_pred HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+..... + ..+++++||++|+|+++++++|.+.+
T Consensus 159 ~~~~~~-~-~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 159 KLAKEI-G-ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHH-T-CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHc-C-CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 211111 1 23899999999999999999998765
No 92
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.90 E-value=3.8e-23 Score=143.74 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=97.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|++|+|||||+++|++........+..+.+....... ....+.+|||||.... ......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH----------HHHHHH
Confidence 457899999999999999999998731111111111111111111 2347999999995321 111223
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh--hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~v 171 (198)
++. .+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+..... .++. ..+.+.. +.++
T Consensus 74 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~------~~~~ 143 (168)
T 1z2a_A 74 YYR---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEA-EGLAKRL------KLRF 143 (168)
T ss_dssp HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHH-HHHHHHH------TCEE
T ss_pred Hhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHH-HHHHHHc------CCeE
Confidence 333 3899999999986322122 234444433 2799999999999975322 1111 1222211 3689
Q ss_pred EEeccCCCCChHHHHHHHHHhh
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++||+++.|+++++++|.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 93
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.90 E-value=2.1e-23 Score=147.84 Aligned_cols=156 Identities=8% Similarity=-0.019 Sum_probs=98.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEE--eCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
++....+|+++|.+|+|||||++++++.... ..+.++.... .+.. ....+.+|||||.... .
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYV---QEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEL----------Q- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCC---CCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCH----------H-
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCCcceEEEEEEECCEEEEEEEEECCCChhh----------h-
Confidence 3445679999999999999999999987321 2222222211 1111 1356788999996321 1
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+..........+..++..... .
T Consensus 82 ----~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~--~ 152 (184)
T 3ihw_A 82 ----FAAW---VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL--K 152 (184)
T ss_dssp ----HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT--T
T ss_pred ----eecC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc--C
Confidence 2222 899999999986322222 335555543 3689999999999952211100011122222211 1
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
..+++++||++|+|+++++++|.+.+..
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999887654
No 94
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=9.3e-23 Score=146.40 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=97.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc-eeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
....+|+++|.+|+|||||+++|++... . ..+..+ +.+. ..... ...+.+|||||.... ..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~ 93 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF-S--ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF----------RT 93 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETTEEEEEEEECCTTCGGG----------HH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC-C--CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH----------HH
Confidence 3457899999999999999999998731 1 111111 1111 11122 247999999996321 23
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
+...++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....... .+.+++..... +
T Consensus 94 ~~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~---~ 165 (201)
T 2hup_A 94 ITQSYYRS---ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS--LAEAQSLAEHY---D 165 (201)
T ss_dssp HHHHHHTT---CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHT---T
T ss_pred HHHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC--HHHHHHHHHHc---C
Confidence 33444443 899999999976322111 234555543 368999999999997532111 01122222211 3
Q ss_pred C-CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 169 Q-PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~-~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
. +++++||++++|+++++++|.+.+.
T Consensus 166 ~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 166 ILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5 8999999999999999999988764
No 95
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.7e-23 Score=148.99 Aligned_cols=156 Identities=16% Similarity=0.126 Sum_probs=100.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+++|++........+..+++....... ....+.+|||||. +.+..+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~ 91 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ----------ERYRTITTA 91 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH----------HHCHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHHHH
Confidence 467999999999999999999998632222222222222222222 2457999999994 222334444
Q ss_pred HHhcccccceEEEEEeCCCCCCcC-cHHHHHHHHh---hCCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~v 171 (198)
++.. +|++++|+|+++..... ...++..+.. .+.|+++|+||+|+...... .+....+.+.. +.++
T Consensus 92 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~ 162 (191)
T 3dz8_A 92 YYRG---AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL------GFDF 162 (191)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEE
T ss_pred HHcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc------CCeE
Confidence 4444 89999999998632211 2334555544 37899999999999654211 11112222221 4689
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++|.|+++++++|.+.+.
T Consensus 163 ~~~Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 163 FEASAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988664
No 96
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.90 E-value=8.1e-23 Score=146.46 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=96.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEE--EEe-C----------------------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINF--FKL-G---------------------------- 66 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~--~~~-~---------------------------- 66 (198)
....+|+++|.+|+|||||+++|++.... ..+.+++ .+... ... +
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFH---ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCC---CCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 35679999999999999999999987411 2222221 11111 111 1
Q ss_pred -----------CceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-hCC
Q 029158 67 -----------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQT 133 (198)
Q Consensus 67 -----------~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-~~~ 133 (198)
..+.+|||||.... ......++. .+|++++|+|++++..... ..++..+.. .+.
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~ 148 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERY----------ASIVPLYYR---GATCAIVVFDISNSNTLDRAKTWVNQLKISSNY 148 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGC----------TTTHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCC
T ss_pred ccccccCccceeEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 57899999995332 122233333 3899999999987422222 234444443 468
Q ss_pred cEEEEEeccCCCCc-HHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 134 KYQVVLTKTDTVFP-IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 134 p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
|+++|+||+|+... ...++ +++.... .+.+++++||+++.|+++++++|.+.+
T Consensus 149 piilv~NK~D~~~~~~~~~~----~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 149 IIILVANKIDKNKFQVDILE----VQKYAQD---NNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EEEEEEECTTCC-CCSCHHH----HHHHHHH---TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEECCCcccccCCHHH----HHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999993221 11222 2222222 246899999999999999999998765
No 97
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.90 E-value=9.5e-23 Score=143.94 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++.. ....+.+++... ..... ...+.+|||||.... ...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~ 82 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF----------SAM 82 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGG----------CSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhh----------HHH
Confidence 446789999999999999999999863 223333333221 11112 234778999996331 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHHhccCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSL 167 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 167 (198)
...++.. +|++++|+|+++...... ..++..+. ..+.|+++|+||+|+....... +....+.+..
T Consensus 83 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~------ 153 (183)
T 3kkq_A 83 REQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY------ 153 (183)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH------
T ss_pred HHHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh------
Confidence 2233333 899999999986322111 23333332 2468999999999997532211 1112222221
Q ss_pred CCCcEEeccC-CCCChHHHHHHHHHhhc
Q 029158 168 VQPVMMVSSK-SGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 168 ~~~v~~~Sa~-~~~gi~~l~~~i~~~~~ 194 (198)
+.+++++||+ +++|+++++++|.+.+.
T Consensus 154 ~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 154 NIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 3789999999 99999999999988764
No 98
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=5.6e-23 Score=147.62 Aligned_cols=153 Identities=19% Similarity=0.141 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||+++|++... . ....+..+.+.. .... ...+.+|||||... +..+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~ 92 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-P-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSIT 92 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-C-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-C-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence 347999999999999999999998731 1 111222222221 1112 24789999999622 12222
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (198)
......+|++++|+|++....... ..++..+.. .+.|+++|+||+|+...... .+....+.+. .+.
T Consensus 93 ---~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~------~~~ 163 (201)
T 2ew1_A 93 ---QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA------QDM 163 (201)
T ss_dssp ---GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH------HTC
T ss_pred ---HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH------cCC
Confidence 233345999999999986322111 234444443 36899999999999753221 1111112111 147
Q ss_pred CcEEeccCCCCChHHHHHHHHHhh
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++++||++|+|+++++++|.+.+
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 164 YYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998765
No 99
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.89 E-value=1.5e-23 Score=159.11 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=110.7
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccce----eecCCCC----------------------ceeE-----------
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVV----RTSDKPG----------------------LTQT----------- 59 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~----~~~~~~~----------------------~t~~----------- 59 (198)
+....++|+++|.+|+|||||+|+|++..... .....+. +|.+
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 44567899999999999999999999874211 1122222 2211
Q ss_pred ---------------EEEEE-eCCceEEEeCCCCccccc---hhHHHHHHHHHHHHHHhcccccc-eEEEEEeCCCCCCc
Q 029158 60 ---------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLK-RVCLLIDTKWGVKP 119 (198)
Q Consensus 60 ---------------~~~~~-~~~~~~iiDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~ 119 (198)
..+.. ...++.+|||||+..... .......+..+...|+.. ++ ++++|+|++.++..
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~~ 178 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLAN 178 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGGG
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchhh
Confidence 01111 136899999999865321 222333455666666664 44 45589999887666
Q ss_pred CcH-HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 120 RDH-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 120 ~~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+. .+++.+...+.|+++|+||+|+...... ....++..+........+++++||++|.|+++++++|.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 179 SDALKIAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp CHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 664 4677777678999999999999865421 111111111111111357899999999999999999877543
No 100
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.89 E-value=7.2e-23 Score=144.86 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEeC---CceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
+...+|+++|.+|+|||||+++|++... . ....+.++.+.. ....+ ..+.+|||||.... ...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 75 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKF-K-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF----------RSV 75 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-C-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------HHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH----------HHH
Confidence 3457999999999999999999998731 1 122222222221 12222 47899999996321 222
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
. ......+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+........ ....+.... .+.
T Consensus 76 ~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~ 147 (186)
T 2bme_A 76 T---RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEASRFAQE---NEL 147 (186)
T ss_dssp H---HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTC
T ss_pred H---HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHHHHHHH---cCC
Confidence 2 233345899999999986322222 234443332 3689999999999964322110 111111111 247
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++++||++|+|+++++++|.+.+.
T Consensus 148 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 148 MFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 101
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.9e-23 Score=150.67 Aligned_cols=158 Identities=11% Similarity=-0.000 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-E--EEEEEe--CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-T--INFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~--~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++... . ..+.+++. . ..+... ...+.+|||||..... ..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~ 89 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEF-P--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD----------RL 89 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSC-C---------CCEEEEEEEETTEEEEEEEEECTTCTTCT----------TT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCC-C--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH----------HH
Confidence 3457999999999999999999998742 1 22222221 1 111111 2478999999964321 11
Q ss_pred HHHHHhcccccceEEEEEeCCCCCC--cCcHHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHH----------HHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAM----------QIEE 159 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~----------~~~~ 159 (198)
.. .....+|++++|+|+++... .....++..+... +.|+++|+||+|+.......+... ...+
T Consensus 90 ~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 90 RP---LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp GG---GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HH---hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 11 22344899999999976321 1113345555544 799999999999986543322111 1111
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..... ...+++++||++|.|+++++++|.+.+-
T Consensus 167 ~~~~~--~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 167 MAVRI--QAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHT--TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhc--CCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111 1237999999999999999999988753
No 102
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=1.7e-23 Score=151.88 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-EEEeC---CceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
....+|+++|.+|+|||||+++|++...........+.+.... +...+ ..+.+|||||..... .+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA----------VLK 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS----------CCC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc----------hHH
Confidence 4567999999999999999999997743333333333332222 22222 458999999964321 112
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
..++. .+|++++|+|++++....+ ..++..+.. .+.|+++|+||+|+........ +...+. ....+.+
T Consensus 79 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~---~~~~~~~ 150 (218)
T 4djt_A 79 DVYYI---GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK--KLVMEV---LKGKNYE 150 (218)
T ss_dssp HHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH--HHHHHH---TTTCCCE
T ss_pred HHHhh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHH---HHHcCCc
Confidence 22333 2899999999987433222 234444443 2689999999999976432211 111111 1233578
Q ss_pred cEEeccCCCCChHHHHHHHHHhhcc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++++||++|.|+++++++|.+.+..
T Consensus 151 ~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 151 YFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp EEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999987643
No 103
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=6.9e-23 Score=142.75 Aligned_cols=158 Identities=14% Similarity=0.041 Sum_probs=93.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..+|+++|.+|+|||||+++|++.. .... ..+.++.+.. +.. ....+.+|||||..... ..+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQ-GDHA-HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG---------GWLQD 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-----------------C
T ss_pred cEEEEEECCCCCCHHHHHHHHHhcc-Cccc-ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc---------hhhhh
Confidence 4689999999999999999998763 1111 1111222211 111 23578899999974311 11222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh----CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
.++.. +|++++|+|+++...... ..++..+... +.|+++|+||+|+........ +..++.... .+.+
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~ 142 (169)
T 3q85_A 71 HCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--EEGRHLAGT---LSCK 142 (169)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTCE
T ss_pred hhhcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH--HHHHHHHHH---cCCc
Confidence 23333 899999999986321111 2334444332 689999999999974322111 111111111 1468
Q ss_pred cEEeccCCCCChHHHHHHHHHhhcccc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
++++||++++|++++++++.+.+...|
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~~i~~~r 169 (169)
T 3q85_A 143 HIETSAALHHNTRELFEGAVRQIRLRR 169 (169)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred EEEecCccCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999876544
No 104
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.89 E-value=1.3e-23 Score=148.10 Aligned_cols=158 Identities=17% Similarity=0.045 Sum_probs=93.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-----EEEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
+....+|+++|.+|+|||||++++++.. ....+.+++.+ .........+.+|||||...- ..
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~ 71 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY----------NR 71 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSC---CC----------CBCCCC-------CEEECCCC-CTT----------TT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh----------hh
Confidence 3456899999999999999999999873 12233333321 112223456789999996331 11
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHH--------HHHHHHHH
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVAR--------RAMQIEES 160 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~--------~~~~~~~~ 160 (198)
....+ ...+|++++|+|+++....... .++..+... +.|+++|+||+|+........ ..+..++.
T Consensus 72 ~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 72 LRPLS---YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp TGGGG---GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred hHHhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 11122 2348999999999763222221 345555543 799999999999976543200 01111221
Q ss_pred HHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.... + ..+++++||++|+|+++++++|.+.+
T Consensus 149 ~~~~-~-~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 149 KKLI-G-APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHH-T-CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHc-C-CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111 1 24899999999999999999998765
No 105
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.89 E-value=4e-23 Score=146.04 Aligned_cols=157 Identities=14% Similarity=-0.007 Sum_probs=99.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
..+|+++|.+|+|||||+++|++... ...+.+++.+. .... ....+.+|||||.... .....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 71 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRP 71 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC---CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC---CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH----------HHHHH
Confidence 46899999999999999999997632 22333333221 1111 2346789999997321 11111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHHHH
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEESL 161 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~~~ 161 (198)
. ....+|++++|+|+++....... .++..+... +.|+++|+||+|+.......+.. +...+..
T Consensus 72 ~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (186)
T 1mh1_A 72 L---SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 148 (186)
T ss_dssp G---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred H---hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence 2 23458999999999863222222 345555544 79999999999997654322111 1111111
Q ss_pred HhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 162 KANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 162 ~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
... ...+++++||++|+|+++++++|.+.+..
T Consensus 149 ~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 149 KEI--GAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHT--TCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred Hhc--CCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 111 12489999999999999999999887643
No 106
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=3.1e-23 Score=166.06 Aligned_cols=153 Identities=22% Similarity=0.352 Sum_probs=109.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCc-cccchh---HHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYAKE---EVKDAWEELV 94 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~-~~~~~~---~~~~~~~~~~ 94 (198)
.+|+++|.+|+|||||+|+|++. ....+.++++||.+.. +...+..+.+|||||+. +....- .....+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~---- 318 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL---- 318 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH----
T ss_pred CEEEEECcCCCcHHHHHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH----
Confidence 68999999999999999999987 4456788888887643 33346789999999986 431100 011111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEe
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 174 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (198)
.++ ..+|++++|+|++++....+.++++.+ .+.|+++|+||+|+......+ .+.+.. ....+++++
T Consensus 319 -~~~---~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~----~~~~~~----~~~~~~i~i 384 (482)
T 1xzp_A 319 -QEI---EKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEE----EIKNKL----GTDRHMVKI 384 (482)
T ss_dssp -HHH---HHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHH----HHHHHH----TCSTTEEEE
T ss_pred -HHh---hcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHH----HHHHHh----cCCCcEEEE
Confidence 122 238999999999886655555555554 378999999999997642222 222221 123689999
Q ss_pred ccCCCCChHHHHHHHHHhh
Q 029158 175 SSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 175 Sa~~~~gi~~l~~~i~~~~ 193 (198)
||++|+|+++++++|.+.+
T Consensus 385 SAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998864
No 107
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=7.5e-23 Score=143.73 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=98.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-EEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
...+|+++|.+|+|||||+++|++........+..+.... ..+... ...+.+|||||.... .....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG----------GKMLD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTT----------CTTHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccc----------cchhh
Confidence 4578999999999999999999987421111111111111 112111 257999999996432 11223
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh-----CCc-EEEEEeccCCCCcHHH-HHHHHHHHHHHHhccCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----QTK-YQVVLTKTDTVFPIDV-ARRAMQIEESLKANNSL 167 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~-----~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 167 (198)
.++. .+|++++|+|+++...... ..++..+... +.| +++|+||+|+...... .+....+.+..
T Consensus 75 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~------ 145 (178)
T 2hxs_A 75 KYIY---GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN------ 145 (178)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH------
T ss_pred HHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc------
Confidence 3333 3899999999986322222 2344444431 556 7999999999753211 11111222111
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+++++||++|+|+++++++|.+.+..
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 146 GFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999887654
No 108
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.89 E-value=6.8e-23 Score=144.06 Aligned_cols=154 Identities=7% Similarity=-0.022 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
...+|+++|.+|+|||||+++|++.. .....+..+......+.. ....+.+|||||... ..+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------~~~ 69 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------AKF 69 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSC-CCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---------------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch---------------hHH
Confidence 45789999999999999999999873 222222221111111111 135689999999632 123
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
+.. +|++++|+|+++...... ..++.++.. .+.|+++|+||+|+..........+..++..... ...+
T Consensus 70 ~~~---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~--~~~~ 144 (178)
T 2iwr_A 70 SGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM--KRCS 144 (178)
T ss_dssp HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH--SSEE
T ss_pred HHh---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh--cCCe
Confidence 332 899999999986322222 122223332 2689999999999942110000001111111111 1468
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|+|+++++++|.+.+.
T Consensus 145 ~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 109
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=3.3e-24 Score=151.23 Aligned_cols=157 Identities=14% Similarity=0.011 Sum_probs=97.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEe--CCceEEEeCCCCccccchhHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
....++|+++|.+|+|||||+++|++... ...+.+++... .+... ...+.+|||||..... .
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~ 69 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS----------I 69 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTC----------C
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhh----------H
Confidence 34568999999999999999999997632 33333333321 12111 2567999999964321 0
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHH----hhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
+...+ ...+|++++|+|+++...... ..++..+. ..+.|+++|+||+|+........ +..++.....
T Consensus 70 ~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~--- 141 (181)
T 3t5g_A 70 FPQTY---SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--EEGKALAESW--- 141 (181)
T ss_dssp CCGGG---TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHHT---
T ss_pred HHHHH---HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--HHHHHHHHHh---
Confidence 11112 234899999999986211111 12333332 23689999999999965432111 1122222211
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+++++||+++.|+++++++|.+.+..
T Consensus 142 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 142 NAAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp TCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887654
No 110
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.89 E-value=7.5e-23 Score=145.76 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+++|++...........+.+....... ....+.+|||||.... ......
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 93 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY----------RAITSA 93 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT----------CTTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhhHH
Confidence 357999999999999999999998742111111112221111111 2457899999997432 122233
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
++. .+|++++|+|++....... ..++..+.. .+.|+++|+||+|+....... .+..++.... .+.+++
T Consensus 94 ~~~---~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~ 165 (193)
T 2oil_A 94 YYR---GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP--TEEARMFAEN---NGLLFL 165 (193)
T ss_dssp HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHH---TTCEEE
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC--HHHHHHHHHH---cCCEEE
Confidence 333 3899999999986322111 234444443 268999999999997542211 0111111111 246899
Q ss_pred EeccCCCCChHHHHHHHHHhh
Q 029158 173 MVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++||++|+|+++++++|.+.+
T Consensus 166 ~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 166 ETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EECTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 111
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=4.8e-23 Score=153.56 Aligned_cols=174 Identities=13% Similarity=0.097 Sum_probs=108.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCC-ceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~-~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
+.....+|+++|.+|+|||||+++|++.. .......+. +|.... ....+.++.+|||||+.+..... ......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~ 94 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKE 94 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHH
Confidence 34467899999999999999999999873 222222222 444322 22346789999999986542211 111222
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-----CCcEEEEEe-ccCCCCcHHHHHHH-----HHHHHHH
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFPIDVARRA-----MQIEESL 161 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~n-K~Dl~~~~~~~~~~-----~~~~~~~ 161 (198)
+.+.+......+|++++|+|+.. +...+..++..+... ..|.++|+| |+|+.... ..... ..+++..
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHH
Confidence 23333334456999999999985 555555566666654 578888888 99998542 22211 1122222
Q ss_pred HhccCCC--CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 162 KANNSLV--QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 162 ~~~~~~~--~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
....... ...+++||+++.|+++++++|.+.+..
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 2222111 112899999999999999999887653
No 112
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.3e-22 Score=143.65 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=98.5
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-E--EEEE--eCCceEEEeCCCCccccchhHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~--~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
++....+|+++|.+|+|||||+++|++... ...+.++... . .+.. ....+.+|||||... .
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~---- 89 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRF---IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-------T---- 89 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-------C----
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCC---CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-------c----
Confidence 345578999999999999999999998732 2222222221 1 1111 135689999999754 1
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhc
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKAN 164 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 164 (198)
.....++.. +|++++|+|+++...... ..++..+.. .+.|+++|+||+|+..... .++.. .+.+..
T Consensus 90 ~~~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~~~~~--- 162 (196)
T 2atv_A 90 IQREGHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGE-KLATEL--- 162 (196)
T ss_dssp HHHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHH-HHHHHH---
T ss_pred cchhhhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHH-HHHHHh---
Confidence 112233333 899999999986322111 233333332 3789999999999976321 11111 122111
Q ss_pred cCCCCCcEEeccCCCC-ChHHHHHHHHHhhcc
Q 029158 165 NSLVQPVMMVSSKSGA-GIRSLRTVLSKIARF 195 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~-gi~~l~~~i~~~~~~ 195 (198)
+.+++++||++|. |+++++++|.+.+..
T Consensus 163 ---~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 163 ---ACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp ---TSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ---CCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 4789999999999 999999999887643
No 113
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.89 E-value=4.1e-23 Score=148.24 Aligned_cols=157 Identities=11% Similarity=0.045 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eE--EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QT--INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~--~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||++++++... ...+.+++ .. ..+.. ....+.+|||||.... ..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~ 89 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------DRL 89 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSC---CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------TTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcC---CcccCCcccceEEEEEEECCEEEEEEEEECCCchhH----------HHH
Confidence 3456899999999999999999998732 12222222 11 11211 1347899999996321 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHH----------HHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVARRA----------MQIEE 159 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~----------~~~~~ 159 (198)
.. .....+|++++|+|+++...... ..++..+... +.|+++|+||+|+.......+.. +...+
T Consensus 90 ~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 90 RP---LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp GG---GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HH---HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 11 12345899999999986321111 2345555544 79999999999998764332211 11122
Q ss_pred HHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 160 SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
..... ...+++++||++|+|+++++++|.+.+
T Consensus 167 ~~~~~--~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 167 MANRI--SAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhC--CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 22111 123799999999999999999998865
No 114
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.89 E-value=3.8e-23 Score=148.73 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=97.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++.... ....+..+.+.. .... ...+.+|||||.... ...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 73 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSL 73 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHh
Confidence 35678999999999999999999987421 111222222222 1111 247899999996321 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh-------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 165 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 165 (198)
...+ ...+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+.......+ ..++....
T Consensus 74 ~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~-- 145 (207)
T 1vg8_A 74 GVAF---YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK---RAQAWCYS-- 145 (207)
T ss_dssp CCGG---GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHH---HHHHHHHH--
T ss_pred HHHH---HhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHH---HHHHHHHh--
Confidence 1122 234899999999986322222 233333322 3689999999999974321111 11111111
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 166 SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 166 ~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
....+++++||++|.|+++++++|.+.+.
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 146 KNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22578999999999999999999987653
No 115
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=2e-23 Score=166.47 Aligned_cols=156 Identities=26% Similarity=0.343 Sum_probs=106.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHH-HHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEY 97 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~-~~~~ 97 (198)
.+|+++|++|+|||||+|+|++. ......+.+++|.+. .+...+.++.+|||||+.+.. +.++.. ....
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~------~~ve~~gi~~~ 297 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS------DQVEKIGVERS 297 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch------hHHHHHHHHHH
Confidence 57999999999999999999987 445567778888764 233346789999999984421 111111 2334
Q ss_pred HhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
......+|++++|+|++++....+.++++.+. ..|+++|+||+|+....... ... ......+++++||+
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~--------~~~-~~~~~~~~i~iSAk 366 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT--------SLE-YPENITQIVHTAAA 366 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST--------TCC-CCTTCCCEEEEBTT
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH--------HHH-HhccCCcEEEEECC
Confidence 45566799999999999877766666666665 47999999999998765332 000 01124689999999
Q ss_pred CCCChHHHHHHHHHhhcc
Q 029158 178 SGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 178 ~~~gi~~l~~~i~~~~~~ 195 (198)
+|+|+++++++|.+.+..
T Consensus 367 tg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQT 384 (462)
T ss_dssp TTBSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987653
No 116
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.89 E-value=7.5e-23 Score=145.36 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=96.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHH-HHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWE-ELV 94 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~-~~~ 94 (198)
....+|+++|.+|+|||||+++|++........+..+.+........ ...+.+|||||... +. .+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 87 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMV 87 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhh
Confidence 34579999999999999999999987321111122222222222222 25799999999521 12 333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
..++. .+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+........ +..++.... .+.
T Consensus 88 ~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~ 159 (189)
T 1z06_A 88 QHYYR---NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT--DLAQKFADT---HSM 159 (189)
T ss_dssp HHHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHH---TTC
T ss_pred HHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH--HHHHHHHHH---cCC
Confidence 44444 3899999999986322112 234444432 3689999999999965422110 111111111 246
Q ss_pred CcEEeccCCC---CChHHHHHHHHHhhc
Q 029158 170 PVMMVSSKSG---AGIRSLRTVLSKIAR 194 (198)
Q Consensus 170 ~v~~~Sa~~~---~gi~~l~~~i~~~~~ 194 (198)
+++++||+++ +|+++++++|.+.+.
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 8999999999 999999999977653
No 117
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=145.53 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=98.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
.....+|+++|.+|+|||||+++|++... .....+.++.+ ..+.. ....+.+|||||..... ..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~ 88 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GW 88 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hh
Confidence 35568999999999999999999986521 11222333322 11211 23467899999974311 11
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCc-CcHHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
+...++.. +|++++|+|+++.... .-..++..+.. .+.|+++|+||+|+....... .+..++.....
T Consensus 89 ~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~a~~~--- 160 (195)
T 3cbq_A 89 LRDHCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLAGTL--- 160 (195)
T ss_dssp HHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC--HHHHHHHHHHT---
T ss_pred hHHHhhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC--HHHHHHHHHHh---
Confidence 22333433 8999999999762211 12234444443 268999999999997542211 01111111111
Q ss_pred CCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 168 VQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 168 ~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+++++||++++|+++++++|.+.+..
T Consensus 161 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 161 SCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999887654
No 118
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.1e-22 Score=144.96 Aligned_cols=155 Identities=19% Similarity=0.119 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+++|++........+..+.+....... ....+.+|||||.... ......
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 83 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPS 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------hhhhHH
Confidence 357899999999999999999998742111122222222222222 2357999999996432 112223
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcH-HHHHHHHHHHHHHHhccCCCCC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
++. .+|++++|+|++....... ..++..+.. .+.|+++|+||+|+.... ..++. .+.... ...+
T Consensus 84 ~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~----~~~~~~---~~~~ 153 (195)
T 1x3s_A 84 YYR---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEG----LKFARK---HSML 153 (195)
T ss_dssp HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHH----HHHHHH---TTCE
T ss_pred Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHH----HHHHHH---cCCE
Confidence 333 3899999999986322222 234455543 368999999999995432 11111 111111 2468
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||+++.|+++++++|.+.+.
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 154 FIEASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988664
No 119
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=8.7e-24 Score=151.71 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=98.0
Q ss_pred CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-----EEEeCCceEEEeCCCCccccchhHHHH
Q 029158 14 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKD 88 (198)
Q Consensus 14 ~~~~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~ 88 (198)
+..+....++|+++|.+|+|||||+++|++... ...+.+++.... +......+.+|||||.....
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------- 86 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEF---SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS------- 86 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCC---CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTC-------
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCC---CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchH-------
Confidence 334455678999999999999999999998742 233333332211 11224668999999964321
Q ss_pred HHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHH-HHHHHHHHHHH
Q 029158 89 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVA-RRAMQIEESLK 162 (198)
Q Consensus 89 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~ 162 (198)
.+...+ ...+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+....... .....+....
T Consensus 87 ---~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~- 159 (201)
T 3oes_A 87 ---ILPYSF---IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW- 159 (201)
T ss_dssp ---CCCGGG---TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-
T ss_pred ---HHHHHH---HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh-
Confidence 111122 234899999999986211111 233444432 268999999999997543221 1111222211
Q ss_pred hccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 163 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+++++||++|.|+++++++|.+.+..
T Consensus 160 -----~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 160 -----GATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp -----TCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred -----CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999887643
No 120
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.89 E-value=7.6e-23 Score=147.86 Aligned_cols=155 Identities=15% Similarity=0.053 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEe--CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++... ...+.+++.+. .+... ...+.+|||||...- ..+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~ 73 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY----------SRL 73 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCC----------CC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHH----------HHH
Confidence 3567999999999999999999998732 23333333221 11111 247899999997432 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHH---------HHHHHHHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDV---------ARRAMQIEES 160 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~---------~~~~~~~~~~ 160 (198)
...++ ..+|++++|+|+++...... ..++..+... +.|+++|+||+|+...... .+....+.+.
T Consensus 74 ~~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 74 RPLSY---RGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp -CGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHhhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 11222 34899999999976322222 1355555544 7999999999999765432 1111222222
Q ss_pred HHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+. ..+++++||++|+|+++++++|.+.+.
T Consensus 151 ~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 151 IG-----AAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp HT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cC-----CceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 11 248999999999999999999988654
No 121
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=146.07 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+++|++........+..+.+........ ...+.+|||||... +......
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRSVTRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHHHHHH
Confidence 3579999999999999999999987321111111111111122222 25799999999421 1222233
Q ss_pred HHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
++. .+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+........ ....+.... .+.+++
T Consensus 94 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~~ 165 (200)
T 2o52_A 94 YYR---GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEASRFAQE---NELMFL 165 (200)
T ss_dssp HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHH---TTCEEE
T ss_pred Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH--HHHHHHHHH---cCCEEE
Confidence 333 3899999999986322222 234444433 3689999999999964322110 111111111 247899
Q ss_pred EeccCCCCChHHHHHHHHHhh
Q 029158 173 MVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++||++|.|+++++++|.+.+
T Consensus 166 ~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 166 ETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EECTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 122
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.89 E-value=5e-22 Score=151.34 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=104.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe----CCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
..+|+++|.+|+|||||++++++. ......+.+++|.+..+... +..+.+|||||...- ...........
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~ 76 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH 76 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence 468999999999999999999987 33444556667766554332 467999999996210 00000122333
Q ss_pred HHhcccccceEEEEEeCCCCCCcCcH-HHHHHH---Hhh--CCcEEEEEeccCCCCcHHHH----HHHHHHHHHHHhccC
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM---ERS--QTKYQVVLTKTDTVFPIDVA----RRAMQIEESLKANNS 166 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~---~~~--~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~ 166 (198)
++. .+|++++|+|+++.....+. .+...+ ... +.|+++|+||+|+....... ...+.+++.......
T Consensus 77 ~~~---~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 77 IFQ---MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHT---TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hhc---cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 333 38999999999874332332 223333 222 79999999999999854443 222334443333221
Q ss_pred CCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 167 LVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
...+++++||++ .|+.+++..+...
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 137899999999 7888888776653
No 123
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=8.7e-22 Score=153.00 Aligned_cols=163 Identities=21% Similarity=0.218 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
...++|+++|.+|+|||||+++|++.. ....+.+++|....... .+..+.+|||||+.+.......... ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~--- 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE-KQ--- 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH-HH---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH-HH---
Confidence 467799999999999999999999974 44566677776655433 2467999999998553211100000 11
Q ss_pred HHHhcccccceEEEEEeCCCCC--CcC-cHHHHHHHHh-h-CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGV--KPR-DHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~--~~~-~~~~~~~~~~-~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
........+|.+++|+|++... ... ..+++..+.. . +.|+++|+||+|+....+.++....+. ....+
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~ 311 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK-------EKGLN 311 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH-------HTTCC
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH-------hcCCC
Confidence 1112223489999999987632 211 2344555443 2 799999999999987665433222221 12478
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|+|+++++++|.+.+.
T Consensus 312 ~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 312 PIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp CEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 124
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.88 E-value=5.3e-23 Score=149.13 Aligned_cols=158 Identities=15% Similarity=0.033 Sum_probs=98.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-E----EEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
.....+|+++|.+|+|||||+++|++.. ....+.+++... . +......+.+|||||.... ..
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~ 90 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDC---YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY----------DN 90 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG----------TT
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCC---CCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH----------HH
Confidence 3456899999999999999999999873 223333333221 1 1112357899999996321 11
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH----------HHHHHHH
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA----------RRAMQIE 158 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~----------~~~~~~~ 158 (198)
+...+ ...+|++++|+|+++...... ..++..+... +.|+++|+||+|+....... ...+...
T Consensus 91 ~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 91 VRPLC---YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TGGGG---CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHH---cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 12222 234899999999987322222 2455555554 78999999999997531100 0011111
Q ss_pred HHHHhccCCCC-CcEEeccCCCCC-hHHHHHHHHHhhc
Q 029158 159 ESLKANNSLVQ-PVMMVSSKSGAG-IRSLRTVLSKIAR 194 (198)
Q Consensus 159 ~~~~~~~~~~~-~v~~~Sa~~~~g-i~~l~~~i~~~~~ 194 (198)
+..... +. +++++||++|.| +++++++|.+.+.
T Consensus 168 ~~~~~~---~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 168 AIAKQL---GAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHH---TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHc---CCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 111111 35 899999999998 9999999988654
No 125
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=3e-22 Score=157.58 Aligned_cols=161 Identities=18% Similarity=0.232 Sum_probs=115.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccc---e-----------eecCCCCceeEEEE---EEeCCceEEEeCCCCccccch
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGV---V-----------RTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAK 83 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~---~-----------~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~ 83 (198)
..+|+++|.+++|||||+++|++.... . ......+.|.+... ...+..+.+|||||+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~------ 76 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH------ 76 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH------
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh------
Confidence 368999999999999999999874100 0 00112345554332 223578999999996
Q ss_pred hHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcH-HHHHHHHHHHHHH
Q 029158 84 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPI-DVARRAMQIEESL 161 (198)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-~~~~~~~~~~~~~ 161 (198)
..+...+......+|++++|+|++++......+++..+...++| +++|+||+|+.... ..+...+++++.+
T Consensus 77 -------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 77 -------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp -------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 34455666677789999999999998777777778777777899 68999999998533 2334445555555
Q ss_pred HhccC--CCCCcEEeccCCCCC----------hHHHHHHHHHhhc
Q 029158 162 KANNS--LVQPVMMVSSKSGAG----------IRSLRTVLSKIAR 194 (198)
Q Consensus 162 ~~~~~--~~~~v~~~Sa~~~~g----------i~~l~~~i~~~~~ 194 (198)
..... ...+++++||++|.| +++|++.|.+.++
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 44321 247999999999764 8899999988664
No 126
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.88 E-value=1.4e-22 Score=145.77 Aligned_cols=155 Identities=16% Similarity=0.105 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE--EEEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||+++|++.... ....+..+.+. ..... ...+.+|||||.... ....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 74 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT--NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTIT 74 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC--TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHH
Confidence 4579999999999999999999987411 11122222222 11222 247999999996331 1111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
..+ ...+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+........ +...+.... .+.+
T Consensus 75 ~~~---~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~---~~~~ 146 (206)
T 2bcg_Y 75 SSY---YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVAKEFADA---NKMP 146 (206)
T ss_dssp GGG---GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHH---TTCC
T ss_pred HHh---ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHH---cCCe
Confidence 122 234899999999986322111 223444443 2589999999999976432110 111111111 2478
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|+|+++++++|.+.+.
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988664
No 127
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.88 E-value=1.7e-23 Score=152.31 Aligned_cols=158 Identities=13% Similarity=0.020 Sum_probs=105.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
.+....+|+++|.+|+|||||+++++.........+..+++........ ...+.+|||||.... ..+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~ 80 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF----------GGL 80 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT----------SCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH----------hHH
Confidence 3455679999999999999999997655334455566666655443332 357899999995321 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh--CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
...++. .+|++++|+|+++...... ..++..+... +.|+++|+||+|+.......+.....+. .+.+
T Consensus 81 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~ 150 (221)
T 3gj0_A 81 RDGYYI---QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK-------KNLQ 150 (221)
T ss_dssp CHHHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHH-------HTCE
T ss_pred HHHHHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHH-------cCCE
Confidence 223333 3899999999987322222 2344444443 7899999999999764322111111111 1478
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++|.|+++++++|.+.+.
T Consensus 151 ~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 151 YYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp EEECBGGGTBTTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 128
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.88 E-value=4.6e-22 Score=144.22 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE-------EEEe----------CCceEEEeCCCCcccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------FFKL----------GTKLCLVDLPGYGFAY 81 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------~~~~----------~~~~~iiDtpG~~~~~ 81 (198)
+...+|+++|.+|+|||||+++|++.... ....+|.... +... ...+.+|||||.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~---- 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN----PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ---- 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC----CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH----
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC----cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc----
Confidence 34579999999999999999999987321 1111222111 1111 356999999994
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQ 156 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~ 156 (198)
+.+......++. .+|++++|+|++....... ..++..+.. .+.|+++|+||+|+....... .+.
T Consensus 95 ------~~~~~~~~~~~~---~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~--~~~ 163 (217)
T 2f7s_A 95 ------ERFRSLTTAFFR---DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN--ERQ 163 (217)
T ss_dssp ------HHHHHHHHHHHT---TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC--HHH
T ss_pred ------HhHHhHHHHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC--HHH
Confidence 222333444444 3899999999976321111 122332322 368999999999997532211 011
Q ss_pred HHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 157 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.++.... .+.+++++||++++|+++++++|.+.+.
T Consensus 164 ~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 164 ARELADK---YGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHHHH---TTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHH---CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2222211 1478999999999999999999987653
No 129
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.88 E-value=7e-23 Score=144.63 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||+++|++... .....+.++.+.. .... ...+.+|||||... +....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 74 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF--NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT 74 (183)
T ss_dssp EEEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------C
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhH
Confidence 457899999999999999999997631 1111122222222 1111 25799999999522 11112
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHH--HHHHHHHHHHHHHhccCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLV 168 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 168 (198)
. .....+|++++|+|+++...... ..++..+... +.|+++|+||+|+..... .++. ..+.+.. +
T Consensus 75 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~------~ 144 (183)
T 2fu5_C 75 T---AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERG-EKLALDY------G 144 (183)
T ss_dssp C---TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHH-HHHHHHH------T
T ss_pred H---HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHH-HHHHHHc------C
Confidence 2 22345899999999986322111 2344444442 689999999999975422 1111 1222111 3
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+++++||++|+|+++++++|.+.+.
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987653
No 130
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=3.5e-22 Score=147.81 Aligned_cols=170 Identities=14% Similarity=0.085 Sum_probs=107.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeec-CCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
....+|+++|.+|+|||||+|+|++.. ..... ...++|... .....+..+.+|||||+.+..... ..+....+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR-RFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK-TDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC-CC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH-HSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC-CccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc-HHHHHHHHH
Confidence 356799999999999999999999984 22221 122344432 233346789999999986532111 011123333
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh------CCcEEEEEeccCCCCcHHHHHHH-----HHHHHHHHh
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS------QTKYQVVLTKTDTVFPIDVARRA-----MQIEESLKA 163 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~iiv~nK~Dl~~~~~~~~~~-----~~~~~~~~~ 163 (198)
+.+......+|++++|+|++. +...+..+++.+... +.|++++.||+|+.... .++.. ..+++....
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHH
Confidence 334444466999999999975 566666667666653 68999999999997642 22222 234444443
Q ss_pred ccCCCCCcEEeccCC-----CCChHHHHHHHHHhhcc
Q 029158 164 NNSLVQPVMMVSSKS-----GAGIRSLRTVLSKIARF 195 (198)
Q Consensus 164 ~~~~~~~v~~~Sa~~-----~~gi~~l~~~i~~~~~~ 195 (198)
. +.+++.+++.. +.|+++|++.|.+.+..
T Consensus 175 ~---g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 175 C---GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp T---TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 3 34566666654 58999999999887653
No 131
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.8e-23 Score=158.33 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|.+|+|||||+++|++.. ... ..+ |.... +...+..+.+|||||... +..+...+
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~-~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 229 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGE-IVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHY 229 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSC-CEE--EEE--ETTEEEEEEEETTEEEEEEECC---------------CCSHHHH
T ss_pred cceEEEECCCCccHHHHHHHHhCCC-CCC--ccc--ccceEEEEEecCcEEEEEEECCCCHh----------HHHHHHHH
Confidence 4589999999999999999999874 222 121 32222 223367899999999422 12223344
Q ss_pred HhcccccceEEEEEeCCCCCCcC--cHHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
+.. +|++++|+|+++..... ...+...+... +.|+++|+||+|+......++....+... .......+++
T Consensus 230 ~~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~--~~~~~~~~~~ 304 (329)
T 3o47_A 230 FQN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLRHRNWYIQ 304 (329)
T ss_dssp HTT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCT--TCCSSCEEEE
T ss_pred hcc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchh--hhhcCCCEEE
Confidence 443 89999999997632211 12233333332 78999999999998765443333332211 1122356799
Q ss_pred EeccCCCCChHHHHHHHHHhhcc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++||++|.|+++++++|.+.+..
T Consensus 305 ~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 305 ATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEECCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 132
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=1.7e-23 Score=150.51 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee-EEE---EEEe----CCceEEEeCCCCccccchhHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN---FFKL----GTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~~---~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
...+|+++|.+|+|||||+++|++.. ......+.+++. +.. +... ...+.+|||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------- 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKG-SKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD------------- 84 (208)
T ss_dssp EEEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------------
Confidence 45799999999999999999999871 122233333332 211 1111 2368999999962
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCC-cHHHHHHHHHHHHHHHh
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKA 163 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~ 163 (198)
.+..........+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+.. ..... .+..++....
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~--~~~~~~~~~~ 162 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR--LDMAQDWATT 162 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC--HHHHHHHHHH
Confidence 112223333455899999999986322111 234555543 3789999999999976 32210 1122222222
Q ss_pred ccCCCCCcEEeccCC-CCChHHHHHHHHHhhc
Q 029158 164 NNSLVQPVMMVSSKS-GAGIRSLRTVLSKIAR 194 (198)
Q Consensus 164 ~~~~~~~v~~~Sa~~-~~gi~~l~~~i~~~~~ 194 (198)
. +.+++++||++ +.|+++++++|.+.+.
T Consensus 163 ~---~~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 163 N---TLDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp T---TCEEEECCC-------CHHHHHHHHHHH
T ss_pred c---CCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 1 37899999999 9999999999988653
No 133
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=2.7e-22 Score=159.55 Aligned_cols=153 Identities=15% Similarity=0.195 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc---------eeecCC----------------------CCceeEEEE---EE
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDK----------------------PGLTQTINF---FK 64 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~---------~~~~~~----------------------~~~t~~~~~---~~ 64 (198)
....+|+++|.+++|||||+++|++.... ...+.. .+.|.+..+ ..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 34578999999999999999999865210 001111 123333222 22
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-cEEEEEeccC
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTD 143 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D 143 (198)
.+..+.+|||||+.+ +...+......+|++++|+|++++......+++..+...+. |+++|+||+|
T Consensus 102 ~~~~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~D 168 (434)
T 1zun_B 102 AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD 168 (434)
T ss_dssp SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred CCceEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCc
Confidence 356799999999732 12223333456999999999999877777777777776676 5899999999
Q ss_pred CCCc--HHHHHHHHHHHHHHHhcc--CCCCCcEEeccCCCCChHH
Q 029158 144 TVFP--IDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 144 l~~~--~~~~~~~~~~~~~~~~~~--~~~~~v~~~Sa~~~~gi~~ 184 (198)
+... ...+...+.+++.+.... ....+++++||++|+|+++
T Consensus 169 l~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 169 LNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 9863 333444555555554443 2347899999999999987
No 134
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=143.49 Aligned_cols=160 Identities=11% Similarity=-0.007 Sum_probs=96.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeC--CceEEEeCCCCccccchhHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
......+|+++|.+|+|||||+++|++.. ....+.+|+.+.. +...+ ..+.+|||||.....
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------- 82 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD---------- 82 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCS----------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHH----------
Confidence 34567899999999999999999999873 2334444443321 21122 467899999974321
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHH----------HHHHH
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVAR----------RAMQI 157 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~----------~~~~~ 157 (198)
.+...++ ..+|++++|+|+++....... .++..+... +.|+++|+||+|+........ ..+..
T Consensus 83 ~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 83 KLRPLCY---TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp SSGGGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHhHhhc---CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 1111222 348999999999863222222 344555443 799999999999976432110 01111
Q ss_pred HHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 158 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 158 ~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
....... ...+++++||++|+|+++++++|.+.+.
T Consensus 160 ~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 160 KLLAEEI--KAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 1111111 1248999999999999999999987654
No 135
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=5.9e-22 Score=156.38 Aligned_cols=163 Identities=19% Similarity=0.190 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc--c-----ceee--------cCCCCceeEE---EEEEeCCceEEEeCCCCccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW--G-----VVRT--------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~--~-----~~~~--------~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~ 80 (198)
....+|+++|.+++|||||+++|++.. . .... ....+.|.+. .+...+..+.+|||||+.+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~- 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD- 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG-
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH-
Confidence 345789999999999999999998730 0 0000 0012334332 2333467899999999732
Q ss_pred cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcH-HHHHHHHHHH
Q 029158 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPI-DVARRAMQIE 158 (198)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-~~~~~~~~~~ 158 (198)
+...+......+|++++|+|++++......+++..+...++| +++|+||+|+.... ..+...++++
T Consensus 88 ------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~ 155 (405)
T 2c78_A 88 ------------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR 155 (405)
T ss_dssp ------------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHH
Confidence 233444445569999999999998777777888888877899 88999999998533 2333444555
Q ss_pred HHHHhccC--CCCCcEEeccCCCCC------------------hHHHHHHHHHhhc
Q 029158 159 ESLKANNS--LVQPVMMVSSKSGAG------------------IRSLRTVLSKIAR 194 (198)
Q Consensus 159 ~~~~~~~~--~~~~v~~~Sa~~~~g------------------i~~l~~~i~~~~~ 194 (198)
+.+..... ...+++++||++|.| +++|+++|.+.++
T Consensus 156 ~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 156 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 55544321 247899999999987 8889998887664
No 136
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=3.2e-22 Score=161.06 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc-----------------------------ceeecCCCCceeEEE---EEEeCCc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTIN---FFKLGTK 68 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~t~~~~---~~~~~~~ 68 (198)
..+|+++|.+|+|||||+++|++... ........++|.+.. +...+..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 46899999999999999999975410 011112234554432 3334678
Q ss_pred eEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhC-CcEEEEEe
Q 029158 69 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQ-TKYQVVLT 140 (198)
Q Consensus 69 ~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~-~p~iiv~n 140 (198)
+.||||||+. .+...+......+|++++|+|++++. .....+.+..+...+ .|+|+|+|
T Consensus 113 ~~iiDTPG~~-------------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviN 179 (483)
T 3p26_A 113 FTIVDAPGHR-------------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 179 (483)
T ss_dssp EEEECCCCCG-------------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCcH-------------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999982 23334444455699999999998862 234455566666666 45999999
Q ss_pred ccCCCC--cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158 141 KTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 141 K~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~ 184 (198)
|+|+.. ....++..+.+.+.+..... ...+++++||++|+|+++
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 999987 33344455555554443221 147899999999999985
No 137
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.8e-23 Score=148.79 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=94.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
....+|+++|.+|+|||||+++|++........+..+.+........ ...+.+|||||.... ..+..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 80 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY----------RAITS 80 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCG
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccch----------hhhHH
Confidence 45679999999999999999999987421111111111111111222 257999999996321 11111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
.+ ...+|++++|+|++....... ..++..+... +.|+++|+||+|+........ +...+.... .+.++
T Consensus 81 ~~---~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~---~~~~~ 152 (223)
T 3cpj_B 81 AY---YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--EESKTFAQE---NQLLF 152 (223)
T ss_dssp GG---TTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--HHHHHHHHH---TTCEE
T ss_pred HH---hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--HHHHHHHHH---cCCEE
Confidence 22 234899999999986322221 2344445433 689999999999975322110 111111111 24789
Q ss_pred EEeccCCCCChHHHHHHHHHhhc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++||++++|+++++++|.+.+.
T Consensus 153 ~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 153 TETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp EECCCC-CCCHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 138
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.87 E-value=2.2e-21 Score=137.29 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=95.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCce-eEEEEE--------EeCCceEEEeCCCCccccchhHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTINFF--------KLGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t-~~~~~~--------~~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
..+|+++|++|+|||||+++|++.. ......+.+|. .+.... .....+.+|||||.. .+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~-~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~ 70 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTK-KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------EFY 70 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH----------HHH
Confidence 4689999999999999999999852 12222222221 222111 135678999999942 122
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCC--cCcHHHHHHHHh--hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCC
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 167 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
.+...++.. ++++++|+|.+++.. ..-..++..+.. .+.|+++|+||+|+..............+.+.. ..
T Consensus 71 ~~~~~~~~~---~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~ 145 (184)
T 2zej_A 71 STHPHFMTQ---RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLN--KR 145 (184)
T ss_dssp TTSHHHHHH---SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT--CT
T ss_pred HhhHHHccC---CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHH--hc
Confidence 223334443 788999999876421 112334444433 268999999999998755433222222222221 12
Q ss_pred CCC----cEEeccCCCC-ChHHHHHHHHHhhcc
Q 029158 168 VQP----VMMVSSKSGA-GIRSLRTVLSKIARF 195 (198)
Q Consensus 168 ~~~----v~~~Sa~~~~-gi~~l~~~i~~~~~~ 195 (198)
+.+ ++++||+++. |++++++.|.+.+..
T Consensus 146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 146 GFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 355 8999999996 999999999877654
No 139
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=142.48 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=100.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC--CceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 91 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~--~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~ 91 (198)
+....++|+++|.+|+|||||+|+|++... .....+ ++|.... ....+..+.+|||||+.+..... .+...
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~--~~~~~ 100 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKV--FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN--AETSK 100 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCC--SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----C--HHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCc--CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH--HHHHH
Confidence 445668999999999999999999999742 222222 3444332 22335689999999987643222 11223
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHH----HHHHHHH
Q 029158 92 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAM----QIEESLK 162 (198)
Q Consensus 92 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~----~~~~~~~ 162 (198)
.+...+......+|++++|+|++. +...+..++..+.. ...|+++|+||+|+......++... .+++...
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 444444444556899999999974 45555555555432 3469999999999987655543222 2333333
Q ss_pred hccCCCCCcEEeccCCC-----CChHHHHHHHHHhhc
Q 029158 163 ANNSLVQPVMMVSSKSG-----AGIRSLRTVLSKIAR 194 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa~~~-----~gi~~l~~~i~~~~~ 194 (198)
.. +.+++.++++.+ .++.+|++.+.+.+.
T Consensus 180 ~~---~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 180 IF---GDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HH---SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Hc---CCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 22 346777777644 688999988877653
No 140
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=1.1e-22 Score=166.54 Aligned_cols=160 Identities=21% Similarity=0.327 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EEEEEe-------------------CCceEEEeCCCCc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-------------------GTKLCLVDLPGYG 78 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~~~~~-------------------~~~~~iiDtpG~~ 78 (198)
+.++|+++|.+++|||||+++|++.. ...... .+.|.. ..+... ...+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~-v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA-VASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH-HSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc-CccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 56899999999999999999999762 211111 123322 111110 1248999999974
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc-----------
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP----------- 147 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------- 147 (198)
+- ..........+|++++|+|+++++.....+.+..+...++|+++++||+|+...
T Consensus 82 ~F-------------~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e 148 (594)
T 1g7s_A 82 AF-------------TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME 148 (594)
T ss_dssp CC-------------TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred HH-------------HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHH
Confidence 31 111123345699999999999998888888888888889999999999999742
Q ss_pred ------HHH----HHHHHHHHHHHHhcc------------CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 148 ------IDV----ARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 148 ------~~~----~~~~~~~~~~~~~~~------------~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+. .+....+.+.+.... ....+++++||++|.|+++|+++|...++
T Consensus 149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 111 111122222222211 22458999999999999999999987654
No 141
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.87 E-value=9.4e-23 Score=144.75 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=96.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE--EEE---eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++.. ....+.+|+.... ... ....+.+|||||..... .
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~- 84 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR---FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR----------N- 84 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC----------C-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch----------h-
Confidence 345799999999999999999999873 2233444443221 111 23578899999963211 1
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh------hCCcEEEEEeccCCCCcHHH--HHHHHHHHHHHHhc
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKAN 164 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 164 (198)
+..++.. +|++++|+|.++...... ..++..+.. .+.|+++|+||+|+...... ++. ..+.+..
T Consensus 85 ~~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~--- 157 (187)
T 3c5c_A 85 CERYLNW---AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG-VALAGRF--- 157 (187)
T ss_dssp THHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH-HHHHHHH---
T ss_pred HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH-HHHHHHc---
Confidence 1233333 899999999985221111 234444433 37999999999999653221 111 1222211
Q ss_pred cCCCCCcEEecc-CCCCChHHHHHHHHHhhc
Q 029158 165 NSLVQPVMMVSS-KSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 165 ~~~~~~v~~~Sa-~~~~gi~~l~~~i~~~~~ 194 (198)
+.+++++|| ++++|+++++++|.+.+.
T Consensus 158 ---~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 158 ---GCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp ---TCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred ---CCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 368999999 899999999999988764
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=2.1e-24 Score=174.15 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=112.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE----eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
+.|+|+++|.+|+|||||+++|.+.. .. ....+++|.+...+. .+..+.||||||+.. +..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~-------------f~~ 67 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA-------------FSA 67 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC-------------TTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHH-------------HHH
Confidence 56889999999999999999999863 22 234455665543222 245799999999732 111
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH--HhccCCCCCcEE
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL--KANNSLVQPVMM 173 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~ 173 (198)
........+|++++|+|+.++....+.+.+..+...++|+++|+||+|+...... .....+.+.. ........++++
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECC
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEE
Confidence 2233445699999999999988888888888888889999999999999753210 1111111110 011122468999
Q ss_pred eccCCCCChHHHHHHHHHhhc
Q 029158 174 VSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+||++|+|+++++++|...+.
T Consensus 147 vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 147 VSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHHT
T ss_pred EECCCCCCchhHHHHHHHhhh
Confidence 999999999999999988764
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=3.1e-21 Score=149.77 Aligned_cols=169 Identities=21% Similarity=0.211 Sum_probs=99.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
.+..+.|+++|++|+|||||+|+|++.. ....+.+++|.+.. +...+..+.++||||+......+ .-+.+.
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~-lve~f~--- 249 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQ-IVDAFF--- 249 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGG-GHHHHH---
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHH-HHHHHH---
Confidence 3456679999999999999999999974 34556666775532 22235678999999974421111 112222
Q ss_pred HHHHhcccccceEEEEEeCCCCC--CcCcH-HHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGV--KPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~--~~~~~-~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
..+.....+|++++|+|+++.. ..... .+.+.+.. .+.|+++|.||+|+.+... ......+...........
T Consensus 250 -~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 250 -VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL-YKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp -HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHHHHCSCE
T ss_pred -HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchH-HHHHHHHHHHHHHhcCCC
Confidence 2233445689999999997642 11111 12233333 3689999999999986541 111122211111110113
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.+++++||++++|+++++++|.+.+.
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 46899999999999999999988664
No 144
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=9.2e-24 Score=151.88 Aligned_cols=156 Identities=13% Similarity=0.002 Sum_probs=99.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE-----EEEEeCCceEEEeCCCCccccchhHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 92 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~ 92 (198)
.....+|+++|.+|+|||||+++|++.. ....+.+++.+. .+......+.+|||||... +..
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~ 93 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDR 93 (204)
Confidence 3456899999999999999999999763 122233333221 1222245677999999632 122
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH----------HHHHH
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIE 158 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~ 158 (198)
....++. .+|++++|+|+++....... .++..+... +.|+++|+||+|+.......+. .+...
T Consensus 94 ~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 94 LRPLSYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
Confidence 2333333 38999999998774333332 455555544 7899999999999764321111 01111
Q ss_pred HHHHhccCCCC-CcEEeccCCCCChHHHHHHHHHh
Q 029158 159 ESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 159 ~~~~~~~~~~~-~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
+.. ...+. +++++||++|+|+++++++|.+.
T Consensus 171 ~~~---~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 AMA---KEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 111 11123 89999999999999999998765
No 145
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=1.4e-21 Score=159.83 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=102.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-ce------ee------cCCCCceeE---EEEEEe-----CCceEEEeCCCCc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWG-VV------RT------SDKPGLTQT---INFFKL-----GTKLCLVDLPGYG 78 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~-~~------~~------~~~~~~t~~---~~~~~~-----~~~~~iiDtpG~~ 78 (198)
..++|+++|++++|||||+++|+.... +. .. ....+.|.. ..+... ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 457899999999999999999986310 00 00 111233332 122111 2578999999984
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 158 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 158 (198)
+- ......++ ..+|++++|+|++++....+...+..+...++|+++|+||+|+.... .++..+.+.
T Consensus 83 dF----------~~ev~~~l---~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~ 148 (599)
T 3cb4_D 83 DF----------SYEVSRSL---AACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIE 148 (599)
T ss_dssp GG----------HHHHHHHH---HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred HH----------HHHHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHH
Confidence 31 11222222 33899999999999888777777777777789999999999998653 233334444
Q ss_pred HHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 159 ESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 159 ~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.+ .....+++++||++|.|+++++++|.+.++.
T Consensus 149 ~~l---g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 149 DIV---GIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHT---CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHh---CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 432 1222469999999999999999999987753
No 146
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.87 E-value=1.4e-21 Score=162.99 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=108.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE----------EEEE-------------------e-----
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI----------NFFK-------------------L----- 65 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~----------~~~~-------------------~----- 65 (198)
..++|+++|.+|+|||||+|+|++. .+...+..+.|.... +... .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4578999999999999999999987 445555555441100 0000 0
Q ss_pred --------------------------CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc
Q 029158 66 --------------------------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 119 (198)
Q Consensus 66 --------------------------~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~ 119 (198)
+.++.+|||||+.+... .......++. .+|++++|+|++.+...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~---~aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVN---NCHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHH---SSSEEEEEEETTSTTCH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHH---hCCEEEEEEeCCCccch
Confidence 04799999999754211 1222333443 48999999999987766
Q ss_pred CcHHHHH-HHHhhCCcEEEEEeccCCCCcH--------HHHHHHHHHH----HHHHhccC------CCCCcEEeccC---
Q 029158 120 RDHELIS-LMERSQTKYQVVLTKTDTVFPI--------DVARRAMQIE----ESLKANNS------LVQPVMMVSSK--- 177 (198)
Q Consensus 120 ~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~--------~~~~~~~~~~----~~~~~~~~------~~~~v~~~Sa~--- 177 (198)
.+...+. .+...+.|+++|+||+|+.... ..+.....+. ..+..... ...+++++||+
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al 296 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQAL 296 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHH
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHH
Confidence 6665553 4555578999999999997543 2222222232 22322211 23579999999
Q ss_pred -----------CCCChHHHHHHHHHhhc
Q 029158 178 -----------SGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 178 -----------~~~gi~~l~~~i~~~~~ 194 (198)
++.|+++++++|.+.+.
T Consensus 297 ~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 297 RRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
No 147
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.87 E-value=1.8e-22 Score=156.66 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=110.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccce----eecCCCC----------------------ceeE------------
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVV----RTSDKPG----------------------LTQT------------ 59 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~----~~~~~~~----------------------~t~~------------ 59 (198)
....++|+++|.+|+|||||+|+|++..... .....+. +|.+
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999874211 1111222 1111
Q ss_pred --------------EEEEE-eCCceEEEeCCCCccccc---hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc
Q 029158 60 --------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121 (198)
Q Consensus 60 --------------~~~~~-~~~~~~iiDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~ 121 (198)
..+.. ...++.+|||||+..... .....+.+..+...|+.. ..+++++++|++.++...+
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~ 185 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSD 185 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhH
Confidence 11111 146899999999865321 233344566777777764 3567888889887666665
Q ss_pred H-HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 122 H-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 122 ~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
. .+++.+...+.|+++|+||+|+...... ....++...........+++++||+++.|++++++++.+.
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 4 3667777678999999999999865321 0111111111111112468999999999999999998764
No 148
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.86 E-value=3.1e-22 Score=141.58 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=96.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEE--eCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
....+|+++|.+|+|||||+++|++... ...+.++.... .+.. ....+.+|||||...- ..+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~ 71 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNV 71 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh----------hhh
Confidence 3567899999999999999999998732 22232222211 1111 1346899999996321 111
Q ss_pred HHHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHHH-HH---------HHHHHH
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDVA-RR---------AMQIEE 159 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~-~~---------~~~~~~ 159 (198)
... ....+|++++|+|+++...... ..++..+... +.|+++|+||+|+....... +. .+..++
T Consensus 72 ~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 72 RPL---SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp GGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHh---hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 111 2345899999999986322222 2344445442 68999999999997532110 00 111222
Q ss_pred HHHhccCCCCCcEEeccC-CCCChHHHHHHHHHhh
Q 029158 160 SLKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA 193 (198)
Q Consensus 160 ~~~~~~~~~~~v~~~Sa~-~~~gi~~l~~~i~~~~ 193 (198)
...... ..+++++||+ ++.|++++++++.+.+
T Consensus 149 ~~~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 149 MAKQIG--AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHT--CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHcC--CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 211111 3689999999 6899999999998765
No 149
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.7e-22 Score=142.88 Aligned_cols=156 Identities=15% Similarity=0.067 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||++++++.. ......++.++.+ ..+.. ....+.+|||+|.... ...+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~-~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---------~~~l~ 105 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLH 105 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---------hhhHH
Confidence 45789999999999999999999752 1222222222222 11211 1245789999995210 01111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHH-HHHHHHHHHHhccCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVAR-RAMQIEESLKANNSLV 168 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (198)
..+ ...+|++++|+|.+....-.. ..++..+.. .++|+++|+||+|+........ ....+... .+
T Consensus 106 ~~~---~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~------~~ 176 (211)
T 2g3y_A 106 DHC---MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV------FD 176 (211)
T ss_dssp HCC---CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH------HT
T ss_pred HHH---HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH------cC
Confidence 112 234789999999875211111 223343432 2689999999999975322111 11111111 13
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++++||++|+|+++++++|.+.+.
T Consensus 177 ~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 177 CKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988764
No 150
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.6e-22 Score=161.71 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC------------------------------CCCceeEEE---EEEe
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------------------------------KPGLTQTIN---FFKL 65 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~------------------------------~~~~t~~~~---~~~~ 65 (198)
....+|+++|.+|+|||||+++|++.. ...... .+++|.+.. +...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~-~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL-NIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS-SCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc-CCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 346799999999999999999999762 111110 134554432 3344
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhCCc-EEE
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQV 137 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~p-~ii 137 (198)
+..+.||||||+ ..+...+......+|++++|+|++.+ ......+.+..+...+.| +|+
T Consensus 244 ~~~~~iiDTPG~-------------e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGH-------------RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSS-------------SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCC-------------cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 678999999998 33456667777789999999999874 234556666666666654 999
Q ss_pred EEeccCCCCc--HHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHHH
Q 029158 138 VLTKTDTVFP--IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 138 v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~l 185 (198)
|+||+|+... ...++....+.+.+..... ...+++++||++|.|++++
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999999873 3344445555554443321 1468999999999999865
No 151
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=1.9e-23 Score=171.39 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=97.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------eeecCCCCceeEEEEEE---eCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LGT 67 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~---~~~ 67 (198)
..++|+++|.+++|||||+++|++.... ......+++|.+..... .+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 4568999999999999999999743100 00011334555543222 357
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhCCc-EEEEE
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL 139 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv~ 139 (198)
.+.||||||+.+- ...+......+|++++|+|++.+. .....+.+..+...++| +|+|+
T Consensus 256 ~i~iiDTPGh~~f-------------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvvi 322 (592)
T 3mca_A 256 IYEIGDAPGHRDF-------------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSV 322 (592)
T ss_dssp ---CCEEESSSEE-------------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEE
T ss_pred EEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 8999999997432 112233334589999999998753 66777788888777887 99999
Q ss_pred eccCCCC--cHHHHHHHHHHHHHH-Hhcc--CCCCCcEEeccCCCCChH--------------HHHHHHHHhhc
Q 029158 140 TKTDTVF--PIDVARRAMQIEESL-KANN--SLVQPVMMVSSKSGAGIR--------------SLRTVLSKIAR 194 (198)
Q Consensus 140 nK~Dl~~--~~~~~~~~~~~~~~~-~~~~--~~~~~v~~~Sa~~~~gi~--------------~l~~~i~~~~~ 194 (198)
||+|+.. ....+.....+.+.+ .... ....+++++||++|.|+. .|++.|.....
T Consensus 323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 9999986 344455556666655 2221 123579999999999998 78888877654
No 152
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.86 E-value=5.9e-22 Score=151.48 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=102.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccc----eeecCCC---CceeE-------------------------------
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSDKP---GLTQT------------------------------- 59 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~~~~~~---~~t~~------------------------------- 59 (198)
....|+|+++|.+|+|||||+|+|++.... ......+ .++..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 446789999999999999999999987321 1111222 11110
Q ss_pred ----------------------EE-EEEeCCceEEEeCCCCccccc---hhHHHHHHHHHHHHHHhcccccceEEEEEeC
Q 029158 60 ----------------------IN-FFKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 113 (198)
Q Consensus 60 ----------------------~~-~~~~~~~~~iiDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~ 113 (198)
.. ....+.++.+|||||+..... .......+......++.. +|++++|+|+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~ 177 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTP 177 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEe
Confidence 00 111246899999999864210 011223334444445444 8999999997
Q ss_pred -CCCCCcCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCC---CCChHHHHHH
Q 029158 114 -KWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---GAGIRSLRTV 188 (198)
Q Consensus 114 -~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~---~~gi~~l~~~ 188 (198)
+.++...+ ..+++.+...+.|+++|+||+|+...... ....++..+........+++.+|+.+ +.|++++++.
T Consensus 178 ~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred cCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 55555455 36777777778999999999999865431 11222211111001123445555555 7999999999
Q ss_pred HHHhhcc
Q 029158 189 LSKIARF 195 (198)
Q Consensus 189 i~~~~~~ 195 (198)
+.+.++.
T Consensus 256 ~~~~~~~ 262 (315)
T 1jwy_B 256 EILYFKN 262 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8877653
No 153
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=1.4e-21 Score=155.50 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=102.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-cce----------------------------eecCCCCceeEEE---EEEeCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW-GVV----------------------------RTSDKPGLTQTIN---FFKLGT 67 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~-~~~----------------------------~~~~~~~~t~~~~---~~~~~~ 67 (198)
...+|+++|.+++|||||+++|++.. .+. ......++|.+.. +...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45789999999999999999998641 000 0011344555543 333467
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-------CCcCcHHHHHHHHhhCC-cEEEEE
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 139 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~-p~iiv~ 139 (198)
.+.+|||||+. .+...+......+|++++|+|+.++ +.....+.+..+...+. |+++|+
T Consensus 85 ~~~iiDtpG~~-------------~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHR-------------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSST-------------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEECCCcH-------------HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 89999999973 2344556666779999999999986 55566667776666675 589999
Q ss_pred eccCCCCc----HHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158 140 TKTDTVFP----IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 140 nK~Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~ 184 (198)
||+|+... ...+...+++++.+..... ...+++++||++|+|+.+
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 99999873 3334555666666554331 137899999999999974
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=1.7e-21 Score=157.61 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-c-------------eeecC------CCCce---eEEEEEEeCCceEEEeCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-V-------------VRTSD------KPGLT---QTINFFKLGTKLCLVDLP 75 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-~-------------~~~~~------~~~~t---~~~~~~~~~~~~~iiDtp 75 (198)
...++|+++|.+|+|||||+++|+.... + ....+ ..++| ....+...+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 3567999999999999999999972110 0 00000 11222 223344457789999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH
Q 029158 76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 148 (198)
Q Consensus 76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 148 (198)
|+.+- ..........+|++++|+|++.+....+..++..+...++|+++|+||+|+....
T Consensus 91 G~~df-------------~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADF-------------TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTC-------------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred CchhH-------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 98432 1233444456999999999999888888888888888899999999999997543
No 155
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=1.3e-21 Score=158.32 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=100.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|.+|+|||||+++|++.+ .. ... +|.+.. +...+..+.+|||||.... ..+...+
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~-~~--~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~ 386 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQ-SV--TTI--PTVGFNVETVTYKNVKFNVWDVGGQDKI----------RPLWRHY 386 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS-CC--CCC--CCSSEEEEEEESSSCEEEEEEECCCGGG----------SGGGGGG
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC-CC--CcC--CccceeEEEEEeCCEEEEEEECCCcHHH----------HHHHHHH
Confidence 4689999999999999999999884 22 222 233322 2234678999999996321 1112222
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHH-Hh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~-~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
...+|++++|+|++....... ..++..+ .. .++|+++|+||+|+......++....+... .......+++
T Consensus 387 ---~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~ 461 (497)
T 3lvq_E 387 ---YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT--RIRDRNWYVQ 461 (497)
T ss_dssp ---GTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCT--TCCSSCEEEE
T ss_pred ---hccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchh--hhhcCCeEEE
Confidence 344899999999986322111 1222222 21 379999999999998654333222221111 1112245699
Q ss_pred EeccCCCCChHHHHHHHHHhhcc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
++||++|+|+++++++|.+.++.
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 156
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=2.7e-23 Score=166.49 Aligned_cols=158 Identities=22% Similarity=0.277 Sum_probs=109.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---eCCceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
++.++|+++|++++|||||+++|.+.. +. ....+++|.+...+. .+..+.||||||+..- ..
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~-v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f-------------~~ 66 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTK-VA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAF-------------TS 66 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHH-HS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC-------------TT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCC-Cc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH-------------HH
Confidence 467889999999999999999998752 22 222344554433222 3567999999997331 11
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH--HHHhccCCCCCcEE
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE--SLKANNSLVQPVMM 173 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~ 173 (198)
.+......+|++++|+|+.++......+.+..+...++|+++++||+|+..... +.....+.+ .+........++++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~ 145 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVH 145 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEE
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEE
Confidence 233445669999999999998888888888888888999999999999975321 000000000 00011122368999
Q ss_pred eccCCCCChHHHHHHHHHh
Q 029158 174 VSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~ 192 (198)
+||++|+|+++++++|...
T Consensus 146 vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 146 VSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCTTTCTTCTTHHHHTTTT
T ss_pred EeeeeccCcchhhhhhhhh
Confidence 9999999999999998754
No 157
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.86 E-value=1.4e-20 Score=161.25 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=115.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-------ce-------eecCCCCceeEE---EEEEeCCceEEEeCCCCcccc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-------VV-------RTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-------~~-------~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~ 81 (198)
....+|+++|.+++|||||+++|++... .. ......++|.+. .+...+..+.+|||||+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH---- 369 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH---- 369 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH----
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh----
Confidence 3457899999999999999999987410 00 011123344332 23334678999999996
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCCCCcHH-HHHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEE 159 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~ 159 (198)
..+...+......+|++++|+|+.++...+..+++..+...++| +|+|+||+|+....+ .+...+++++
T Consensus 370 ---------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~e 440 (1289)
T 3avx_A 370 ---------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRE 440 (1289)
T ss_dssp ---------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence 44556677777889999999999998888888888888777899 789999999986433 2334455555
Q ss_pred HHHhcc--CCCCCcEEeccCCC--------CChHHHHHHHHHhhc
Q 029158 160 SLKANN--SLVQPVMMVSSKSG--------AGIRSLRTVLSKIAR 194 (198)
Q Consensus 160 ~~~~~~--~~~~~v~~~Sa~~~--------~gi~~l~~~i~~~~~ 194 (198)
.+.... ....+++++||++| .|+++|+++|.+.++
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 554432 12479999999999 578999999987654
No 158
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=1.3e-21 Score=159.76 Aligned_cols=160 Identities=22% Similarity=0.232 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-cee------e------cCCCCceeE---EEEEEe-----CCceEEEeCCCC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVR------T------SDKPGLTQT---INFFKL-----GTKLCLVDLPGY 77 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~~------~------~~~~~~t~~---~~~~~~-----~~~~~iiDtpG~ 77 (198)
...++|+++|.+++|||||+++|+.... +.. . ....+.|.. ..+... ...+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 4567899999999999999999986310 000 0 011222322 122111 257889999998
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHH
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 157 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 157 (198)
.+- .. +.......+|++++|+|++++....+...+..+...+.|+++|+||+|+.... .++..+.+
T Consensus 84 ~dF----------~~---ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el 149 (600)
T 2ywe_A 84 VDF----------SY---EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQI 149 (600)
T ss_dssp GGG----------HH---HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred HhH----------HH---HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHH
Confidence 431 11 22222344899999999999887777777777777799999999999998653 22333333
Q ss_pred HHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 158 EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 158 ~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+.+ .....+++++||++|.|+++++++|.+.++.
T Consensus 150 ~~~l---g~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 150 EEVL---GLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHTS---CCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHhh---CCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 3322 1112358999999999999999999987753
No 159
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-21 Score=141.26 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE-E--EEEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~--~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||+++|++... ...+.++... . .+... ...+.+|||||.... ..+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~ 93 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVR 93 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHH
Confidence 356899999999999999999998732 2222222221 1 11111 356899999996321 1111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc--HHHHHHHHhh--CCcEEEEEeccCCCCcHHH-HHH---------HHHHHHH
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPIDV-ARR---------AMQIEES 160 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~-~~~---------~~~~~~~ 160 (198)
..+ ...+|++++|+|+++...... ..++..+... +.|+++|+||+|+...... .+. .+..++.
T Consensus 94 ~~~---~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 94 PLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred Hhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 122 234899999999986322122 2344555442 6899999999999753211 000 1112222
Q ss_pred HHhccCCCCCcEEeccC-CCCChHHHHHHHHHhh
Q 029158 161 LKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA 193 (198)
Q Consensus 161 ~~~~~~~~~~v~~~Sa~-~~~gi~~l~~~i~~~~ 193 (198)
..... ..+++++||+ +++|+++++++|.+.+
T Consensus 171 ~~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 171 AKQIG--AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHT--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHcC--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 11111 2589999999 6899999999998764
No 160
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=1.1e-21 Score=156.88 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-ccee----------------------e------cCCCCceeEEE---EEEeCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVR----------------------T------SDKPGLTQTIN---FFKLGT 67 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~----------------------~------~~~~~~t~~~~---~~~~~~ 67 (198)
...+|+++|.+++|||||+++|++.. .+.. . ....++|.+.. +...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 34789999999999999999998641 0000 0 00134454432 333456
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCc-------CcHHHHHHHHhhCCc-EEEEE
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQTK-YQVVL 139 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-------~~~~~~~~~~~~~~p-~iiv~ 139 (198)
.+.+|||||+ ..+...+......+|++++|+|+.++..+ ...+.+..+...++| +++|+
T Consensus 86 ~~~iiDtPGh-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivvi 152 (458)
T 1f60_A 86 QVTVIDAPGH-------------RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAV 152 (458)
T ss_dssp EEEEEECCCC-------------TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCc-------------HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEE
Confidence 8999999997 33445566677789999999999875322 445556666666776 89999
Q ss_pred eccCCCC--cHHHHHHHHHHHHHHHhccC--CCCCcEEeccCCCCChHH
Q 029158 140 TKTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 184 (198)
Q Consensus 140 nK~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~v~~~Sa~~~~gi~~ 184 (198)
||+|+.. ....+...+++++.+..... ...+++++||++|+|+.+
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 9999984 33344555556555444321 137899999999999874
No 161
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.85 E-value=4.1e-21 Score=147.58 Aligned_cols=156 Identities=14% Similarity=0.005 Sum_probs=99.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEe--CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||++++++.. ....+.+++.+.. +... ...+.+|||||.... ....
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 220 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLR 220 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------TTTG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC---CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh----------hHHH
Confidence 45789999999999999999999873 2334444444322 1111 235669999996331 1111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCcH--HHHHHHHhh--CCcEEEEEeccCCCCcHHHHHH----------HHHHHHH
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVARR----------AMQIEES 160 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~----------~~~~~~~ 160 (198)
......+|++++|+|+++.....+. .++..+... +.|+++|+||+|+.......+. .+...+.
T Consensus 221 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 297 (332)
T 2wkq_A 221 ---PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297 (332)
T ss_dssp ---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred ---HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHH
Confidence 1223458999999999863222222 344555544 7999999999999765322111 1111222
Q ss_pred HHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
.... ...+++++||++|+|+++++++|.+.+
T Consensus 298 ~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 298 AKEI--GAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHT--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHc--CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 2111 123899999999999999999998765
No 162
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.84 E-value=6.5e-21 Score=158.61 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=116.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCcee----------------------------------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---------------------------------------- 58 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~---------------------------------------- 58 (198)
-..|+|+++|.+++|||||+|+|++....+ .+... +|+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP-~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~ 126 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLP-RGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 126 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSC-CSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccC-cCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence 357899999999999999999999974211 11111 110
Q ss_pred --------------EEEE-EEeCCceEEEeCCCCcccc---chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcC
Q 029158 59 --------------TINF-FKLGTKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 120 (198)
Q Consensus 59 --------------~~~~-~~~~~~~~iiDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~ 120 (198)
...+ .....++.++||||+.... ........+..++..|+. ..+|++++|+|++.++...
T Consensus 127 ~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~ 204 (772)
T 3zvr_A 127 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANS 204 (772)
T ss_dssp HHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSC
T ss_pred hhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchh
Confidence 0111 1124579999999987632 123345567777878877 4589999999999987777
Q ss_pred cH-HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHH-HHHhccCCCCCcEEeccCCCCChHHHHHHHHHh
Q 029158 121 DH-ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE-SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 121 ~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~ 192 (198)
+. .+++.+...+.|+++|+||+|+........ .+.+ ..........+++++||++|.|+++|.+.+.+.
T Consensus 205 d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~---~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 205 DALKIAKEVDPQGQRTIGVITKLDLMDEGTDAR---DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSH---HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcccCCcchhhH---HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 76 688888888899999999999987543211 1111 000111123578999999999999999999863
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=9.8e-21 Score=151.67 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=95.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-c----------------------eee------cCCCCceeEEE---EEEeCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWG-V----------------------VRT------SDKPGLTQTIN---FFKLGT 67 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~-~----------------------~~~------~~~~~~t~~~~---~~~~~~ 67 (198)
...+|+++|.+++|||||+++|+.... + ... ....++|.+.. +...+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 346899999999999999999974210 0 000 11234454433 222356
Q ss_pred ceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC-------CcCcHHHHHHHHhhCCc-EEEEE
Q 029158 68 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL 139 (198)
Q Consensus 68 ~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv~ 139 (198)
.+.+|||||+ ..+...+......+|++++|+|+.++. .....+.+..+...++| +++|+
T Consensus 122 ~~~iiDtPGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivvi 188 (467)
T 1r5b_A 122 RFSLLDAPGH-------------KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVI 188 (467)
T ss_dssp EEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEE
T ss_pred EEEEEECCCc-------------HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 7999999997 344455666667799999999999864 24556667767777887 99999
Q ss_pred eccCCCC----cHHHHHHHHHHHHHHHhc-cCC---CCCcEEeccCCCCChHHHH
Q 029158 140 TKTDTVF----PIDVARRAMQIEESLKAN-NSL---VQPVMMVSSKSGAGIRSLR 186 (198)
Q Consensus 140 nK~Dl~~----~~~~~~~~~~~~~~~~~~-~~~---~~~v~~~Sa~~~~gi~~l~ 186 (198)
||+|+.. .+..+...+++.+.+... ... ..+++++||++|+|+++++
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999964 233344445555555433 211 4689999999999998744
No 164
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.84 E-value=1.2e-23 Score=150.79 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=90.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE--EEEEEe---CCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||+++|++..... ...+.++.+ ...... ...+.+|||||..... ...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 99 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TIT 99 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC--HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC----------CCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH----------HHH
Confidence 35799999999999999999999873111 111112211 222222 2579999999963321 111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhh---CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
..+ ...+|++++|+|+++...... ..++..+... +.|+++|+||+|+........ ...++... ..+.+
T Consensus 100 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~~~~~~---~~~~~ 171 (199)
T 3l0i_B 100 SSY---YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFAD---SLGIP 171 (199)
T ss_dssp CC-----CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS--CC-CHHHH---TTTCC
T ss_pred HHH---hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH--HHHHHHHH---HcCCe
Confidence 122 234899999999986322111 2344444433 689999999999975432110 01111111 12478
Q ss_pred cEEeccCCCCChHHHHHHHHHhhc
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++++||++++|+++++++|.+.+.
T Consensus 172 ~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 172 FLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp BCCCCC---HHHHHHHHHHTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 165
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=6.2e-21 Score=135.94 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEE--eCCceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|.+|+|||||++++++.. ......++.++.+ ..+.. ....+.+|||+|..... ..+.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---------~~~~ 74 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---------EWLH 74 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHS-CCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCc-CCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---------hhHH
Confidence 35789999999999999999999642 1222222222222 12211 12356889999963210 1111
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
..++.. +|++++|+|.++..+-.. ..++..+.. .+.|+++|+||+|+........ +..+. +.. ..+.
T Consensus 75 ~~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~--~~~~~-~a~--~~~~ 146 (192)
T 2cjw_A 75 DHCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV--SEGRA-XAV--VFDX 146 (192)
T ss_dssp GGHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH--HHHHH-HHH--HTTC
T ss_pred Hhhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH--HHHHH-HHH--HhCC
Confidence 223322 789999999875211111 223333332 2689999999999964321110 11111 111 1146
Q ss_pred CcEEeccCCCCChHHHHHHHHHhhc
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+++++||++|.|++++++++.+.+.
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 166
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=1.4e-20 Score=136.48 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
....++|+++|++|+|||||+++|++.........+.+ +.... .....+.+|||||+... ......+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~--~~~~~~~l~Dt~G~~~~----------~~~~~~~ 75 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEP-LSAAD--YDGSGVTLVDFPGHVKL----------RYKLSDY 75 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSC-EEETT--GGGSSCEEEECCCCGGG----------THHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCc-eEEEE--eeCceEEEEECCCcHHH----------HHHHHHH
Confidence 45678999999999999999999998742111111111 11111 14568999999997432 1222233
Q ss_pred Hhc-ccccceEEEEEeCC-C--CCCcCcHHHHHHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc-C
Q 029158 98 VST-RVSLKRVCLLIDTK-W--GVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-S 166 (198)
Q Consensus 98 ~~~-~~~~d~vi~v~d~~-~--~~~~~~~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~ 166 (198)
+.. ...+|++++|+|++ . .+......+...+.. .+.|+++|+||+|+.......+....+++.+.... .
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 155 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 322 23479999999998 3 222222222233221 37999999999999876554433333332221110 0
Q ss_pred CCCCcEEeccCCCC
Q 029158 167 LVQPVMMVSSKSGA 180 (198)
Q Consensus 167 ~~~~v~~~Sa~~~~ 180 (198)
...+++++||+++.
T Consensus 156 ~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 156 RKKSLNEVERKINE 169 (218)
T ss_dssp HHHHHHC-------
T ss_pred Hhcccccccccccc
Confidence 12355666666554
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=5.4e-20 Score=142.91 Aligned_cols=170 Identities=19% Similarity=0.238 Sum_probs=89.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCC------CCceeEEEEEEe-------CCceEEEeCCCCccccchh---
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTINFFKL-------GTKLCLVDLPGYGFAYAKE--- 84 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~------~~~t~~~~~~~~-------~~~~~iiDtpG~~~~~~~~--- 84 (198)
..+|+++|++|+|||||+++|++... ...... ...|........ ...+.+|||||+++.....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~-~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDL-YPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC----------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCC-CCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46799999999999999999887631 111111 112322221111 2368999999996643211
Q ss_pred -HHHHHHHHHHHHHHhcccc----------cceEEEEEeC-CCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHH
Q 029158 85 -EVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 152 (198)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~----------~d~vi~v~d~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 152 (198)
.....+......|+..... +++++|+++. .+++...+..+++.+. .++|+|+|+||+|+.+..++..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence 1122222222345544322 3468888876 5566666666666664 4799999999999998776655
Q ss_pred HHHHHHHHHHhccCCCCCcEEeccCCCCC---hHHHHHHHHHhhcc
Q 029158 153 RAMQIEESLKANNSLVQPVMMVSSKSGAG---IRSLRTVLSKIARF 195 (198)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~~~Sa~~~~g---i~~l~~~i~~~~~~ 195 (198)
....+.+... ..+++++++||+++.| +.++.+.|.+.+++
T Consensus 195 ~k~~i~~~~~---~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 195 LKKRILDEIE---EHNIKIYHLPDAESDEDEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHTT---CC-CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHH---HCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence 4455555433 2358999999999887 33344445444443
No 168
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.83 E-value=2.6e-20 Score=151.80 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=96.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------eCCceEEEeCCCCccccc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------LGTKLCLVDLPGYGFAYA 82 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------~~~~~~iiDtpG~~~~~~ 82 (198)
+....+|+++|.+|+|||||++++++.... ..+.+ |....+.. .+..+.+|||||.....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~---~~~~~-t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~- 112 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD---PKESQ-THGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH- 112 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT-
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC---CCCCC-ccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH-
Confidence 445689999999999999999999987321 22211 11111111 14679999999953321
Q ss_pred hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC--CcEEEEEeccCCCCcHHHHHHHHHHHHH
Q 029158 83 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDTVFPIDVARRAMQIEES 160 (198)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 160 (198)
.....++.. +|++++|+|+++. .....++..+.... .|+++|+||+|+....... .+.+++.
T Consensus 113 ---------~~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~ 176 (535)
T 3dpu_A 113 ---------ASHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE--QKKINER 176 (535)
T ss_dssp ---------TTCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC--HHHHHHH
T ss_pred ---------HHHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC--HHHHHHH
Confidence 112233333 8999999999863 44456677777654 9999999999997643321 1222332
Q ss_pred HHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 161 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 161 ~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.. ..+.+++++||++|.|+++++++|.+.+..
T Consensus 177 ~~---~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 177 FP---AIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CG---GGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HH---hcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 22 224789999999999999999999987654
No 169
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.82 E-value=8.7e-20 Score=141.61 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCcee-------------------EEEE------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQ-------------------TINF------------ 62 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~-------------------~~~~------------ 62 (198)
...++|+++|.+|+|||||+++|... .++......+..+. ...+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 35678999999999999999998632 12222222221111 0000
Q ss_pred -----------EEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh
Q 029158 63 -----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 131 (198)
Q Consensus 63 -----------~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~ 131 (198)
...+..+.||||||++... ... ...+|++++|+|+..+...... ...+ .
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---------~~~-------~~~aD~vl~V~d~~~~~~~~~l--~~~~--~ 216 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQSE---------VAV-------ANMVDTFVLLTLARTGDQLQGI--KKGV--L 216 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSHH---------HHH-------HTTCSEEEEEEESSTTCTTTTC--CTTS--G
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---------HHH-------HHhCCEEEEEECCCCCccHHHH--HHhH--h
Confidence 0125789999999975420 111 1449999999998754222111 1111 2
Q ss_pred CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 132 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 132 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
+.|+++|+||+|+............+.+.+.... ....+++++||++|+|+++++++|.+.+..
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4699999999999876555555556665543332 224789999999999999999999887653
No 170
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.81 E-value=2.2e-20 Score=146.53 Aligned_cols=87 Identities=22% Similarity=0.164 Sum_probs=47.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE---------------------------eCCceEEEeC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL 74 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------~~~~~~iiDt 74 (198)
.+|+++|.+|+|||||+|+|++.. ...++++++|.+..... ...++.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 379999999999999999999984 56678888876533211 0246999999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 029158 75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 116 (198)
Q Consensus 75 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~ 116 (198)
||+..... ....+..+++.....+|++++|+|++.+
T Consensus 79 pG~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99853211 1123445666677789999999999874
No 171
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.81 E-value=2.9e-19 Score=135.63 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=97.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 100 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198)
+|+++|.+|+|||||++++.+.. ........++|....+. ....++.+|||+|...-.... | ....|++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~-~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~-----l--~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM-QPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS-----Y--DSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC-CSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCS-----H--HHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCC-CCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchh-----h--hhhhhccC
Confidence 58999999999999999887652 22111122233322221 234789999999974321000 0 13455554
Q ss_pred ccccceEEEEEeCCCCCCcCcHHH---HHHHHh--hCCcEEEEEeccCCCCcHHHHH----HHHHHHHHHHhcc--CCCC
Q 029158 101 RVSLKRVCLLIDTKWGVKPRDHEL---ISLMER--SQTKYQVVLTKTDTVFPIDVAR----RAMQIEESLKANN--SLVQ 169 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~~~~~~~~---~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~--~~~~ 169 (198)
++++++|+|+++.+.....++ +..+.. .+.|+++|+||+|+....+..+ ......+.+.... ..++
T Consensus 73 ---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i 149 (331)
T 3r7w_B 73 ---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149 (331)
T ss_dssp ---CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred ---CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence 899999999987522222222 222222 2689999999999987654322 2222222222211 1357
Q ss_pred CcEEeccCCCCChHHHHHHHHHhh
Q 029158 170 PVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 170 ~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+++++||++ .++.+.|..|.+.+
T Consensus 150 ~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 150 SFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EEECCCSSS-SHHHHHHHHHHTTS
T ss_pred eEEEeccCC-CcHHHHHHHHHHHH
Confidence 899999998 58999988887644
No 172
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=132.07 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=58.6
Q ss_pred ccceEEEEEeCCCC--CCcCc-HHHHHHHHh----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 103 SLKRVCLLIDTKWG--VKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 103 ~~d~vi~v~d~~~~--~~~~~-~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
.+|++++|+|+++. .+-.. ..++..+.. .+.|+++|+||+|+...... +..++..... ...+++++|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~--~~~~~~e~S 235 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSK--KNLQVVETS 235 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTS--SSCCEEECB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhc--CCCeEEEEE
Confidence 48999999999864 22221 233443332 37999999999999765443 2222222221 257899999
Q ss_pred cCCCCChHHHHHHHHHhhc
Q 029158 176 SKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~~~ 194 (198)
|+++.|+++++++|.+.+.
T Consensus 236 Ak~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 236 ARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 9999999999999987653
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.80 E-value=3e-19 Score=144.72 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-ccee-------------ec------CCCCceeE---EEEEEeCCceEEEeCCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVR-------------TS------DKPGLTQT---INFFKLGTKLCLVDLPG 76 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~-~~~~-------------~~------~~~~~t~~---~~~~~~~~~~~iiDtpG 76 (198)
..++|+++|.+|+|||||+++|+... .+.. .. ...++|.. ..+...+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 45789999999999999999998631 1100 00 11122221 23344467899999999
Q ss_pred CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcH
Q 029158 77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 148 (198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 148 (198)
+.+- ..........+|++++|+|+..+.......++..+...++|+++++||+|+....
T Consensus 92 ~~df-------------~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDF-------------SEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTC-------------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred ChhH-------------HHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 8431 1123333455999999999999877666777777777789999999999997653
No 174
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.80 E-value=2.7e-19 Score=145.53 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc--------------------ceeecCCCCcee---EEEEEEeCCceEEEeCCC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWG--------------------VVRTSDKPGLTQ---TINFFKLGTKLCLVDLPG 76 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~--------------------~~~~~~~~~~t~---~~~~~~~~~~~~iiDtpG 76 (198)
+.++|+++|..++|||||..+|+.... ........+.|. ...+.+.+..+.++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 467899999999999999999973210 000111122222 234556688999999999
Q ss_pred CccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
+. ++..+..+.+..+|++++|+|+.+|+..+...+++++...++|.++++||+|....
T Consensus 110 Hv-------------DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQ-------------DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp GG-------------GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred cH-------------HHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 73 33445555566699999999999999999999999999999999999999999754
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=7e-19 Score=146.28 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccc----eee------cC------CCCce---eEEEEEEeCCceEEEeCCCCc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLT---QTINFFKLGTKLCLVDLPGYG 78 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~~------~~------~~~~t---~~~~~~~~~~~~~iiDtpG~~ 78 (198)
.....+|+++|+.|+|||||+++|++.... ..+ .+ ..+.+ ....+......+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 345678999999999999999999843110 000 00 01112 223344456789999999974
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
+- ......++ ..+|++++|+|+.++.......++..+...++|+++|+||+|+.
T Consensus 86 ~f----------~~~~~~~l---~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DF----------VGEIRGAL---EAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp GG----------HHHHHHHH---HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ch----------HHHHHHHH---hhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 31 11122222 33899999999998888777888888888899999999999997
No 176
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.79 E-value=1.7e-18 Score=144.61 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=80.9
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcc-ce---------eecC------CCCceeEEE---EEEeC-------CceE
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWG-VV---------RTSD------KPGLTQTIN---FFKLG-------TKLC 70 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~~---------~~~~------~~~~t~~~~---~~~~~-------~~~~ 70 (198)
+....++|+++|..|+|||||+++|+.... +. ...+ ..+.|.... +...+ ..+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 345678999999999999999999975310 00 0111 123343322 22223 7899
Q ss_pred EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
+|||||+.+ +..+.......+|++++|+|++.+.......++..+...++|+++|+||+|+...
T Consensus 86 liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVD-------------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccc-------------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 999999732 1112222233489999999999987777777777777778999999999999764
No 177
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=134.35 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCce------------------------------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLT------------------------------------ 57 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t------------------------------------ 57 (198)
...+.|+++|++|||||||+|+|++. ..+......+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34778999999999999999999862 1222222222111
Q ss_pred -eEEE-----EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh
Q 029158 58 -QTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 131 (198)
Q Consensus 58 -~~~~-----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~ 131 (198)
++.. +...+.++.++||||+... . .. . ...+|++++|+|++.+... +.+.. .-.
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~------~~----l---~~~~d~vl~V~d~~~~~~~---~~i~~-~il 211 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---E------FA----V---ADMVDMFVLLLPPAGGDEL---QGIKR-GII 211 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---H------HH----H---HTTCSEEEEEECCC----------------C
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---h------hh----H---HhhCCEEEEEEcCCcchhH---HHhHH-HHH
Confidence 1000 0012467899999997532 0 11 1 1248999999999864221 11111 112
Q ss_pred CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 132 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 132 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
..|.++|+||+|+............+...+.... ....+++++||++|+|+++++++|.+.+.
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 5789999999999764433333344443332211 11357899999999999999999988764
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=6.5e-19 Score=138.50 Aligned_cols=159 Identities=22% Similarity=0.260 Sum_probs=104.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--E-eC-CceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LG-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~-~~-~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..|+++|++|||||||++.|++.. ..+.+++.+|...... . .+ ..+.++||||+.+...... .+...+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~------~L~~~f 229 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK------GLGLEF 229 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC------CSCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhh------hhhHHH
Confidence 468999999999999999999874 4566777766543322 2 22 6799999999854321100 001123
Q ss_pred HhcccccceEEEEEeCCCCCCcCcH-HHHHHHHh-----hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 171 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v 171 (198)
+.....++.+++++|.+. -...+. .+.+++.. ...|.++|+||+|+..... ...+.+.+.. ...++
T Consensus 230 l~~~era~~lL~vvDls~-~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~----~~~l~~~l~~---~g~~v 301 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEA----VKALADALAR---EGLAV 301 (416)
T ss_dssp HHHHTSSSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH----HHHHHHHHHT---TTSCE
T ss_pred HHHHHHHHhhhEEeCCcc-CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHH----HHHHHHHHHh---cCCeE
Confidence 333445899999999961 111111 12222222 2589999999999987522 2333333322 24689
Q ss_pred EEeccCCCCChHHHHHHHHHhhccc
Q 029158 172 MMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
+++||++++|+++++++|.+.+...
T Consensus 302 i~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 302 LPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EEEECCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999887543
No 179
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.3e-19 Score=137.54 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE---EEeCCceEEEeCCCCccccchhHHHHHHHHH
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 93 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~ 93 (198)
..++..+|+++|.||+|||||+|+|++.. ..+.++++||.+... ...+.+++++||||+....... ..+
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~------~~~ 139 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG------RGR 139 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh------hHH
Confidence 45667899999999999999999999984 678999999987653 3347889999999986543211 223
Q ss_pred HHHHHhcccccceEEEEEeCCC
Q 029158 94 VKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 94 ~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
..+++.....+|++++|+|+++
T Consensus 140 g~~~l~~i~~ad~il~vvD~~~ 161 (376)
T 4a9a_A 140 GKQVIAVARTCNLLFIILDVNK 161 (376)
T ss_dssp HHHHHHHHHHCSEEEEEEETTS
T ss_pred HHHHHHHHHhcCccccccccCc
Confidence 4456666667999999999985
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=2.5e-18 Score=128.71 Aligned_cols=124 Identities=20% Similarity=0.172 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
..++|+++|.+|+|||||+|+|++. ......+.+++|... .+...+..+.+|||||+.+...... .+...+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~---~~~~~i~~ 113 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS 113 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchH---HHHHHHHH
Confidence 4579999999999999999999987 444455666666432 2333466899999999865321111 11122222
Q ss_pred HHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-C----CcEEEEEeccCCCCcH
Q 029158 97 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI 148 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-~----~p~iiv~nK~Dl~~~~ 148 (198)
++. ...+|+++||+|... .+...+.++++.+... + .|+++|+||+|+.++.
T Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred Hhh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 322 235899999988754 3444455667666543 2 6999999999998654
No 181
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=141.38 Aligned_cols=136 Identities=21% Similarity=0.271 Sum_probs=90.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccce--eecCCCCceeEEEEEEe------------------------------
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKL------------------------------ 65 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~~------------------------------ 65 (198)
....++|+++|.+|+|||||+|+|++.. +. ..+..+.|++...+...
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~-~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQE-VPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSC-CSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCc-cccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 4567899999999999999999999983 32 34555555432211110
Q ss_pred --------C----CceEEEeCCCCccccchhHHHHH--HHHHHHHHHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHh
Q 029158 66 --------G----TKLCLVDLPGYGFAYAKEEVKDA--WEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER 130 (198)
Q Consensus 66 --------~----~~~~iiDtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~ 130 (198)
+ .++.+|||||+.+..... .... +......++. .+|++++|+|+.. +....+..+++.+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~-~~~~~~f~~~~~~~l~---~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQR-VSRGYDFPAVLRWFAE---RVDLIILLFDAHKLEISDEFSEAIGALRG 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHH---HCSEEEEEEETTSCCCCHHHHHHHHHTTT
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhH-HHHHhhHHHHHHHHHH---hCCEEEEEEeCCcCCCCHHHHHHHHHHHh
Confidence 0 369999999986521100 0000 2233333333 3899999999987 455566677777776
Q ss_pred hCCcEEEEEeccCCCCcHHHHHHHHHHH
Q 029158 131 SQTKYQVVLTKTDTVFPIDVARRAMQIE 158 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 158 (198)
.+.|+++|+||+|+....++......+.
T Consensus 217 ~~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp CGGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 6789999999999998777666555554
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.78 E-value=9.1e-19 Score=146.12 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=80.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCc-cce---------eecC------CCCceeE---EEEEEeCCceEEEeCCCC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQW-GVV---------RTSD------KPGLTQT---INFFKLGTKLCLVDLPGY 77 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~-~~~---------~~~~------~~~~t~~---~~~~~~~~~~~iiDtpG~ 77 (198)
+....++|+++|.+|+|||||+++|+... ... ...+ .+++|.. ..+...+..+.+|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 45667899999999999999999998421 000 0111 1223322 123333678999999998
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
.+- ......++. .+|++++|+|+.++....+...+..+...+.|+++|+||+|+...
T Consensus 86 ~df----------~~~~~~~l~---~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDF----------TVEVERSLR---VLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSC----------CHHHHHHHH---HCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred cch----------HHHHHHHHH---HCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 542 111122222 399999999999988777777888888889999999999999864
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=135.58 Aligned_cols=173 Identities=18% Similarity=0.216 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecC-----CCCceeEEEE-------EEeCCceEEEeCCCCccccch---
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-----KPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAK--- 83 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~-----~~~~t~~~~~-------~~~~~~~~iiDtpG~~~~~~~--- 83 (198)
.-..+|+++|++|+|||||++.|++........+ ...++ .... ......+++|||+|++.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~-~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTV-QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CC-EEEEEECC------CEEEEEEECC-----------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccce-eeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 3446799999999999999999998732111110 01111 1111 111236899999998654211
Q ss_pred -hHHHHHHHHHHHHHHhc----------ccccceEEEEEeCC-CCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHH
Q 029158 84 -EEVKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 151 (198)
Q Consensus 84 -~~~~~~~~~~~~~~~~~----------~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 151 (198)
....+........++.. ...+++++|++++. +++...+..+++.+.. ++|+|+|+||+|+.+..++.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHH
Confidence 11111122222233211 11244566666665 5777777778887765 79999999999999887777
Q ss_pred HHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 152 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
.....+.+.+... +++++++|+++++++++++..+...++++
T Consensus 187 ~~k~~i~~~~~~~---~i~~~~~sa~~~~~v~~~~~~l~~~iPfa 228 (418)
T 2qag_C 187 QFKKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDRLPLA 228 (418)
T ss_dssp HHHHHHHHHHHHH---TCCCCCCC-----------------CCEE
T ss_pred HHHHHHHHHHHHc---CCeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence 6667777666554 57899999999999999999888877764
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=8.2e-19 Score=146.35 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-c---eee------cC------CCCceeE---EEEEEeCCceEEEeCCCCc
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWG-V---VRT------SD------KPGLTQT---INFFKLGTKLCLVDLPGYG 78 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~-~---~~~------~~------~~~~t~~---~~~~~~~~~~~iiDtpG~~ 78 (198)
....++|+++|.+|+|||||+++|+.... . ..+ .+ ..++|.. ..+...+..+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 34578999999999999999999984210 0 000 00 1223322 2233346789999999974
Q ss_pred cccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
+- ......++. .+|++++|+|+..+........+..+...+.|+++|+||+|+...
T Consensus 89 df----------~~~~~~~l~---~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DF----------TIEVERSMR---VLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TC----------HHHHHHHHH---HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ch----------HHHHHHHHH---HCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 31 111222232 389999999999988777777777788789999999999999764
No 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.77 E-value=2.7e-18 Score=122.78 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=94.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE---EEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 97 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~ 97 (198)
..+|+++|++|+|||||+++|++........+..+.... +.+......+.+|||||.... ......+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------~~~~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRITSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh----------hhhhHHH
Confidence 468999999999999999999987321111111111111 111112246788999995321 1112233
Q ss_pred HhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEE
Q 029158 98 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 173 (198)
Q Consensus 98 ~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 173 (198)
+. .++++++|+|......... ..++..+.. .+.|+++|+||+|+....... ......... ...+.++.
T Consensus 75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~~---~~~~~~~d 146 (199)
T 2f9l_A 75 YR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFAE---KNNLSFIE 146 (199)
T ss_dssp HT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---HTTCEEEE
T ss_pred Hh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcC--HHHHHHHHH---HcCCeEEE
Confidence 33 3789999999876322222 234444433 368999999999996432110 011111111 12467899
Q ss_pred eccCCCCChHHHHHHHHHhh
Q 029158 174 VSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+||+++.|+++++++|.+.+
T Consensus 147 ~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 147 TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.77 E-value=1.9e-18 Score=133.39 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCceeE-------------------EEEE-----------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQT-------------------INFF----------- 63 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~~-------------------~~~~----------- 63 (198)
.....|+++|++|+|||||++.|.+. ..+......+.++.. ..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 45678999999999999999999732 122323222222210 0000
Q ss_pred ------------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh
Q 029158 64 ------------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 131 (198)
Q Consensus 64 ------------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~ 131 (198)
..+.++.++||||+.+. ... . ...+|++++|+|++.+..... +.. ...
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~----------~~~---~---~~~aD~vl~Vvd~~~~~~~~~---l~~-~~~ 193 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQS----------ETE---V---ARMVDCFISLQIAGGGDDLQG---IKK-GLM 193 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH----------HHH---H---HTTCSEEEEEECC------CC---CCH-HHH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccch----------HHH---H---HHhCCEEEEEEeCCccHHHHH---HHH-hhh
Confidence 12568999999998542 111 1 145999999999975422111 110 112
Q ss_pred CCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccC----CCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 132 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 132 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+.|.++|+||+|+....+.......+++.+..... ...+++++||++|+|+++++++|.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46889999999998765554444455554433221 1357899999999999999999988654
No 187
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.77 E-value=5.9e-18 Score=126.14 Aligned_cols=123 Identities=22% Similarity=0.208 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEE---EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
...+|+++|.+|+|||||+|+|++. .......++++|.... +...+..+.+|||||+.+..... +.+...+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~---~~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN---HQALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch---HHHHHHHHH
Confidence 4578999999999999999999998 4445666666665432 33346789999999986532211 111222333
Q ss_pred HHhcccccceEEEEEeCCC-CCCcCcHHHHHHHHhh-----CCcEEEEEeccCCCCc
Q 029158 97 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 147 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~ 147 (198)
++. ...+|++++|++... .+...+..+++.+... ..|+++|+||+|+...
T Consensus 111 ~l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 111 FLV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HTT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 332 235899999987754 2344445667666543 2499999999999643
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=1.6e-18 Score=134.82 Aligned_cols=160 Identities=23% Similarity=0.237 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCc---------------e---------------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---------------T--------------------------- 57 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~---------------t--------------------------- 57 (198)
..|+|+++|.+|+|||||+|+|++......... ..| .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 567999999999999999999999632111110 000 0
Q ss_pred --------------eEEEEE-EeCCceEEEeCCCCccccc---hhHHHHHHHHHHHHHHhcccccceEEEEEeCCCC-CC
Q 029158 58 --------------QTINFF-KLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VK 118 (198)
Q Consensus 58 --------------~~~~~~-~~~~~~~iiDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~ 118 (198)
....+. ....++++|||||+..... .......+..+...|+.. +|++++++|+... ..
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~~ 188 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDLA 188 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCGG
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCcC
Confidence 001111 1245799999999866421 223444556666666655 8989999886542 22
Q ss_pred c-CcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHH
Q 029158 119 P-RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 188 (198)
Q Consensus 119 ~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~ 188 (198)
. ....++..+...+.|+++|+||+|+....... ...++. .......+++++|++.+.++++.++.
T Consensus 189 ~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--~~~~~~---~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 189 TSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDA--VEILEG---RSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCS--HHHHTT---SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred CHHHHHHHHHhcccCCCEEEEEeCCccCCCcccH--HHHHcC---ccccccCCeEEEEECChHHhccCCCH
Confidence 2 22444555555678999999999998654211 111111 12233578999999998877765443
No 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.76 E-value=5.7e-18 Score=126.07 Aligned_cols=167 Identities=18% Similarity=0.179 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh-----cCccceeecCCCCc----------------eeEEE-----------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGL----------------TQTIN----------------- 61 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~-----~~~~~~~~~~~~~~----------------t~~~~----------------- 61 (198)
....+++.|.+|+||||++++|. +. ++..+...+.. ..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 45678999999999999999998 44 34444333221 00000
Q ss_pred ------------EEEeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHH-H----
Q 029158 62 ------------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-L---- 124 (198)
Q Consensus 62 ------------~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~---- 124 (198)
....+..+.+|||||..+.. .+..+...+...... +++++++|+.......+.. .
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-------~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF-------LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-------HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-------hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 00013579999999973311 001111122223344 7899999987643333222 1
Q ss_pred HHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHH------HHH-----------------HhccCCCCCcEEeccCCCCC
Q 029158 125 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE------ESL-----------------KANNSLVQPVMMVSSKSGAG 181 (198)
Q Consensus 125 ~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~-----------------~~~~~~~~~v~~~Sa~~~~g 181 (198)
.......+.|+++|+||+|+....+.++..+.++ +.+ ........+++++||++++|
T Consensus 164 ~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 164 LLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred HHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc
Confidence 1222334799999999999987654332222211 111 01112235899999999999
Q ss_pred hHHHHHHHHHhhcc
Q 029158 182 IRSLRTVLSKIARF 195 (198)
Q Consensus 182 i~~l~~~i~~~~~~ 195 (198)
+++++++|.+.++.
T Consensus 244 i~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 244 FEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 190
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.75 E-value=1.4e-18 Score=123.66 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEE---EEEEeC--CceEEEeCCCCccccchhHHHHHHHHHH
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 94 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~~~ 94 (198)
...+|+++|++|+|||||++.+++..... ...+..+.+. .+...+ ..+.+|||||..... .+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~ 95 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AIT 95 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhh
Confidence 34789999999999999999999874211 1112112111 121122 346679999964321 112
Q ss_pred HHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHh---hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCC
Q 029158 95 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 170 (198)
Q Consensus 95 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
..+++. ++++++|+|......... ..++..+.. .+.|+++|+||+|+....... ....+.... .....
T Consensus 96 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~~---~~~~~ 167 (191)
T 1oix_A 96 SAYYRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFAE---KNGLS 167 (191)
T ss_dssp HHHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH---HTTCE
T ss_pred HHHhhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHH---HcCCE
Confidence 233332 788999999875322122 224444432 368999999999996432110 011111111 12467
Q ss_pred cEEeccCCCCChHHHHHHHHHhh
Q 029158 171 VMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 171 v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++.+||+++.|+++++++|.+.+
T Consensus 168 ~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 168 FIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998754
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.1e-18 Score=120.59 Aligned_cols=133 Identities=20% Similarity=0.245 Sum_probs=79.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccceee-cCCCCceeEEEEEEeCCceEEEeCCCCccccchhHHHHHHHHHHHH
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 96 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 96 (198)
....++|+++|++|+|||||+++|++....... ...+.++.+ ..+..+.+|||||....... +......
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~------~~~~~~~ 114 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----YDGSGVTLVDFPGHVKLRYK------LSDYLKT 114 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C----CCCTTCSEEEETTCCBSSCC------HHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee----ecCCeEEEEECCCCchHHHH------HHHHHHh
Confidence 356789999999999999999999987421111 111111111 14678999999997543111 1222222
Q ss_pred HHhcccccceEEEEEeCCCCCCcC--cHHHH-HHHHh------hCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 029158 97 YVSTRVSLKRVCLLIDTKWGVKPR--DHELI-SLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 163 (198)
Q Consensus 97 ~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~-~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 163 (198)
....+|++++|+|++...... ...++ ..+.. .+.|+++|+||+|+.......+..+.+.+.+..
T Consensus 115 ---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~ 187 (193)
T 2ged_A 115 ---RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK 187 (193)
T ss_dssp ---HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred ---hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHH
Confidence 223489999999997211110 11222 22221 379999999999999877666666666665543
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=2.2e-17 Score=125.23 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC------CceeEE---E----EEEeCCceEEEeCCCCccccch--
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTI---N----FFKLGTKLCLVDLPGYGFAYAK-- 83 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~------~~t~~~---~----~~~~~~~~~iiDtpG~~~~~~~-- 83 (198)
.-..+|+++|++|+|||||++.|++.. .......+ ..+... . .......+++|||+|++.....
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTD-LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCC-ccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 445789999999999999999988751 11111100 011111 1 1112357899999998543210
Q ss_pred --hHHHHHHHHHHHHHHhccc----------ccceEEEEEeCCC-CCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHH
Q 029158 84 --EEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTKW-GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 150 (198)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~----------~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 150 (198)
......+......++.... .++.++|+.++.. ++...+.++++.+.. +.|+++|+||.|+.+..+.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHH
Confidence 1111112222223433321 1234666666543 466655555555542 5799999999999987665
Q ss_pred HHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhh
Q 029158 151 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
....+.+++..... +++++++||+++ |++++++++.+.+
T Consensus 174 ~~~~~~~~~~~~~~---~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 174 ERLKKRILDEIEEH---NIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHHHT---TCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCeEEecCCccc-cccHHHHHHHHHh
Confidence 54455555555443 478999999999 9999988777654
No 193
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.73 E-value=2.7e-18 Score=142.17 Aligned_cols=160 Identities=23% Similarity=0.280 Sum_probs=113.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc-ce---ee------cCC------CCceeE---EEEEEeCCceEEEeCCCCcccc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWG-VV---RT------SDK------PGLTQT---INFFKLGTKLCLVDLPGYGFAY 81 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~-~~---~~------~~~------~~~t~~---~~~~~~~~~~~iiDtpG~~~~~ 81 (198)
.++|+++|+.++|||||..+|+.... +. .+ .++ .+.|.. ..+.+.+..+.++||||+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~--- 78 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHM--- 78 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcH---
Confidence 46799999999999999999974210 00 00 111 112222 2344557889999999983
Q ss_pred chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 161 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (198)
++..+..+.+..+|++++|+|+.+|+..++..+++++...++|.++++||+|....+- ....+.+++.+
T Consensus 79 ----------DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~-~~~~~~i~~~l 147 (638)
T 3j25_A 79 ----------DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDL-STVYQDIKEKL 147 (638)
T ss_dssp ----------STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCS-HHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCH-HHHHHHHHHHh
Confidence 3455666677779999999999999999999999999999999999999999865321 11111111100
Q ss_pred ----------------------------------------------------------HhccCCCCCcEEeccCCCCChH
Q 029158 162 ----------------------------------------------------------KANNSLVQPVMMVSSKSGAGIR 183 (198)
Q Consensus 162 ----------------------------------------------------------~~~~~~~~~v~~~Sa~~~~gi~ 183 (198)
........|++..||.++.|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~ 227 (638)
T 3j25_A 148 SAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGID 227 (638)
T ss_dssp CCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHH
T ss_pred CCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCch
Confidence 0011224789999999999999
Q ss_pred HHHHHHHHhhc
Q 029158 184 SLRTVLSKIAR 194 (198)
Q Consensus 184 ~l~~~i~~~~~ 194 (198)
.|++.|.+.++
T Consensus 228 ~LLd~i~~~~p 238 (638)
T 3j25_A 228 NLIEVITNKFY 238 (638)
T ss_dssp HHHHHHHHSCC
T ss_pred hHhhhhhcccc
Confidence 99999988765
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.73 E-value=4.5e-18 Score=123.48 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc----cceeecCCCCceeE----------EE-E------------------EEe
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQT----------IN-F------------------FKL 65 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~----~~~~~~~~~~~t~~----------~~-~------------------~~~ 65 (198)
...+.|+++|.+|+|||||+++|++.. .+..+...++++.+ .. + ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 356789999999999999999998641 22333333322110 00 0 012
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
+..+.+|||+|..... .++. ...+.+++|+|+..+.. .........+.|+++|+||+|+.
T Consensus 108 ~~d~iiidt~G~~~~~--------------~~~~--~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP--------------VDFD--LGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp TCSEEEEEEEEBSSGG--------------GGCC--CSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGH
T ss_pred CCCEEEEeCCCCCCCC--------------chhc--cccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCC
Confidence 3567888888842110 0111 13577899999976421 12222233468999999999996
Q ss_pred CcH--HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 146 FPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 146 ~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
... +.++..+.+++. ....+++++||++|+|+++++++|.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~-----~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 168 EAVGADVEKMKADAKLI-----NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHTCCHHHHHHHHHHH-----CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred cchhhHHHHHHHHHHHh-----CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 431 233333333321 234789999999999999999999887653
No 195
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.70 E-value=5.7e-17 Score=135.85 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=83.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCccc----ee------------ecCCCCceeE---EEEEEe-------CCceE
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV----VR------------TSDKPGLTQT---INFFKL-------GTKLC 70 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~~~~----~~------------~~~~~~~t~~---~~~~~~-------~~~~~ 70 (198)
|-++.++|+++|+.++|||||..+|+..... .. .....+.|.. +.+... +..+.
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 3356789999999999999999999843100 00 0112223322 222222 35799
Q ss_pred EEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCc
Q 029158 71 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 147 (198)
Q Consensus 71 iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 147 (198)
++||||+.+ +..+....+..+|++++|+|+.+|+..++..+++++...++|.++++||+|....
T Consensus 89 lIDTPGHvD-------------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 89 VIDTPGHVD-------------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EECCCSCTT-------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred EEeCCCCcc-------------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 999999833 3344555555599999999999999999999999999999999999999998643
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=3.9e-17 Score=125.97 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE--EEe------------------CCceEEEeCCCCccc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL------------------GTKLCLVDLPGYGFA 80 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~~iiDtpG~~~~ 80 (198)
..+|+++|.+|+|||||+|+|++.. ....+++++|.+... ... +..+.+|||||+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 3689999999999999999999974 556777777765331 111 257999999998643
Q ss_pred cchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
.... ..+..+++.....+|++++|+|+++
T Consensus 80 a~~~------~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKG------EGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccc------chHHHHHHHHHHhcCeEEEEEecCC
Confidence 2110 1122234444456999999999986
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.69 E-value=5.1e-17 Score=125.96 Aligned_cols=86 Identities=24% Similarity=0.276 Sum_probs=58.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEE--E----------------------EeCCceEEEeCCCC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F----------------------KLGTKLCLVDLPGY 77 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~----------------------~~~~~~~iiDtpG~ 77 (198)
.+|+++|.+|+|||||+|+|++.. ....+++++|...+. . ..+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 579999999999999999999863 445667766654221 1 12457999999998
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
....... ..+.+.++.....+|++++|+|+++
T Consensus 80 ~~~a~~~------~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKG------EGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSS------SCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccc------chHHHHHHHHHHhCCEEEEEEECCC
Confidence 6532211 0111233334445999999999986
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=2.8e-17 Score=139.71 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccce--------eec------CCCCceeE---EEEEEe----------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--------RTS------DKPGLTQT---INFFKL---------------- 65 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~--------~~~------~~~~~t~~---~~~~~~---------------- 65 (198)
...++|+++|.+|+|||||+++|+...... ... ...+.|.. ..+...
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 346789999999999999999998641100 000 11222321 111111
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 145 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 145 (198)
+..+.+|||||+.+- ......++ ..+|++++|+|+.++....+...+..+...++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df----------~~~~~~~l---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF----------SSEVTAAL---RVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSS----------CHHHHHHH---HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhh----------HHHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 457899999998542 11122333 34999999999999877777777777777789999999999987
Q ss_pred C------cH----HHHHHHHHHHHHHHhc----------cCCCCCcEEeccCCCCCh
Q 029158 146 F------PI----DVARRAMQIEESLKAN----------NSLVQPVMMVSSKSGAGI 182 (198)
Q Consensus 146 ~------~~----~~~~~~~~~~~~~~~~----------~~~~~~v~~~Sa~~~~gi 182 (198)
. ++ +.....+.+.+.+... .....++...|+++|+++
T Consensus 164 ~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~ 220 (842)
T 1n0u_A 164 LLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF 220 (842)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence 3 22 2334445555444321 111236788899988763
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.68 E-value=3.7e-16 Score=120.23 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCcee-----------------EEEEE-------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQ-----------------TINFF------------- 63 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~-----------------~~~~~------------- 63 (198)
.....++++|++|||||||++.|.+. ..+...+..+.++. +...+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 34567999999999999999999831 12322222221111 00011
Q ss_pred ------------EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHH-HHHHh
Q 029158 64 ------------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMER 130 (198)
Q Consensus 64 ------------~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~~ 130 (198)
..+.++.++||||+.... ..+ ...+|.+++++|+..+.. .+.+ ..+.
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v------~~~~d~vl~v~d~~~~~~---~~~i~~~i~- 192 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAV------ADLTDFFLVLMLPGAGDE---LQGIKKGIF- 192 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHH------HTTSSEEEEEECSCC---------CCTTHH-
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhH------HhhCCEEEEEEcCCCccc---HHHHHHHHh-
Confidence 126789999999986531 111 134899999999864311 1100 0111
Q ss_pred hCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccC----CCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 131 SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~----~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
+.+.++++||+|+....+ .....+.+...+..... ...+++++||+++.|+++|++.|.+.+.
T Consensus 193 -~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 193 -ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 246788899999865332 22233344433332221 1367999999999999999999988764
No 200
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.1e-15 Score=118.36 Aligned_cols=170 Identities=16% Similarity=0.297 Sum_probs=100.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccce--eecC-CCCceeE-EEE-EEeC---CceEEEeCCCCccccchh----H---
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSD-KPGLTQT-INF-FKLG---TKLCLVDLPGYGFAYAKE----E--- 85 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~--~~~~-~~~~t~~-~~~-~~~~---~~~~iiDtpG~~~~~~~~----~--- 85 (198)
.++++++|++|+|||||++.|++.. +. .... .++.+.. ..+ .... ..++++|++|++...... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3459999999999999999999873 11 1111 1222322 111 1111 368999999997643221 1
Q ss_pred -HHHHHHHHHHHHHhcc------cc--cc-eEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHH
Q 029158 86 -VKDAWEELVKEYVSTR------VS--LK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 155 (198)
Q Consensus 86 -~~~~~~~~~~~~~~~~------~~--~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 155 (198)
+...+..++.++.... .. +| ++++++|+.+++...+.++++.+. .+.|+|+|+||+|..++.+......
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~ 199 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKI 199 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHH
Confidence 1223333333332111 11 22 366778998888888888888887 5899999999999999888877777
Q ss_pred HHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhccc
Q 029158 156 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (198)
.+.+.+.. .+++++++|..+ +...+....+...++++
T Consensus 200 ~I~~~L~~---~gi~I~~is~~d-~~~~~~~~~~~~~~PFa 236 (427)
T 2qag_B 200 KITSELVS---NGVQIYQFPTDD-ESVAEINGTMNAHLPFA 236 (427)
T ss_dssp HHHHHHBT---TBCCCCCCC------CCSHHHHHTTC-CCB
T ss_pred HHHHHHHH---cCCcEEecCCCc-hhHHHHHhhhcCCCCeE
Confidence 77765543 368888888643 22333444455555544
No 201
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.65 E-value=2.8e-18 Score=133.49 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=90.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhH-HHHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE-VKDAWEELVK 95 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~-~~~~~~~~~~ 95 (198)
.+|+++|.+|+|||||+|+|++. ......++.+++|........+..+.++||||+.+...... .. ...+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHHH
Confidence 57999999999999999999985 12455788899998887777777799999999866421111 11 11122
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHH
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 161 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (198)
.+......+.++|++++.+.........++.+...+.|+++++||+|.....+.++..+.+++.+
T Consensus 238 -~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 238 -LITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp -HHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred -HhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence 22223457889999998542222232224444455789999999999998877777666666653
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.64 E-value=3.9e-18 Score=132.76 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=102.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC----ccceeecCCCCceeEEEEEEeCCceEEEeCCCCccccchhH-HHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE-VKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~~~~~~-~~~~~~~~~~ 95 (198)
..+|+++|.+|+|||||+|+|++. ......++.+++|........+.++.++||||+........ .. ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l- 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD---ARDL- 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSC---TTTH-
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHh---HHHH-
Confidence 357999999999999999999975 12356778889999888777777899999999865421111 00 1112
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
..+......+.++|++++.+.........++.+...+.|+++++||+|.....+.+...+.+++.+. ..+.+.+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g------~~l~p~~ 311 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG------ELLSPPS 311 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT------TTBCSSC
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcC------CccCCCC
Confidence 2222224589999999995422222222244444557899999999999887766666666665532 4566666
Q ss_pred cCCCCChHH
Q 029158 176 SKSGAGIRS 184 (198)
Q Consensus 176 a~~~~gi~~ 184 (198)
+....++.+
T Consensus 312 ~~~~~~~~~ 320 (369)
T 3ec1_A 312 KRYAAEFPP 320 (369)
T ss_dssp GGGTTTCCC
T ss_pred chhhhhccC
Confidence 665555443
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.58 E-value=7.9e-15 Score=106.64 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=42.5
Q ss_pred hCCcEEEEEeccCCCCcH--HHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 131 SQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+.|.++|+||+|+.... ..++....+++ . ....+++++||++|+|+++++++|.+.+..
T Consensus 163 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 163 MKTADLIVINKIDLADAVGADIKKMENDAKR----I-NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTTCSEEEEECGGGHHHHTCCHHHHHHHHHH----H-CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeccccCchhHHHHHHHHHHHHH----h-CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 367899999999996432 22222222222 1 224689999999999999999999887654
No 204
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.57 E-value=5.4e-14 Score=104.96 Aligned_cols=142 Identities=23% Similarity=0.361 Sum_probs=89.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeec-------CCCCcee--EEE----EEEeCCceEEEeCCCCccccchhH---
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQ--TIN----FFKLGTKLCLVDLPGYGFAYAKEE--- 85 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~t~--~~~----~~~~~~~~~iiDtpG~~~~~~~~~--- 85 (198)
.+++++|++|+|||||++.|++... ...+ +.+.+.. ... .......++++|++|++.......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5799999999999999999997531 1111 1111111 111 111235789999999876432211
Q ss_pred -HHHH----HHHHHHHHHhcc-------cccceEEEEEeCC-CCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHH
Q 029158 86 -VKDA----WEELVKEYVSTR-------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 152 (198)
Q Consensus 86 -~~~~----~~~~~~~~~~~~-------~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 152 (198)
..+. +.......++.. ..+.+.++++|.. +++...+.++++.+... +++|+|+||+|..+..+...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHH
Confidence 1111 122222222211 1256678888854 78888888888888876 99999999999999988888
Q ss_pred HHHHHHHHHHhcc
Q 029158 153 RAMQIEESLKANN 165 (198)
Q Consensus 153 ~~~~~~~~~~~~~ 165 (198)
....+++.+....
T Consensus 161 ~k~~i~~~l~~~~ 173 (270)
T 3sop_A 161 FKQRVRKELEVNG 173 (270)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 8888887777653
No 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.49 E-value=6.9e-13 Score=104.13 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=97.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceee---cCCCCceeEEEEEEeC--CceEEEeCCCCccccchhHHHHHHHHHHH
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 95 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~---~~~~~~t~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~~~~~ 95 (198)
...++++|++|+|||||+|.|++....... .+...+++...++... .+++++|+||++... ... .+++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~--~~~----~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN--FPP----DTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS--CCH----HHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchH--HHH----HHHHH
Confidence 347999999999999999999984211111 1111122222233322 478999999986421 111 22222
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC---------cHHHHHHHHHHHHHH----H
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF---------PIDVARRAMQIEESL----K 162 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---------~~~~~~~~~~~~~~~----~ 162 (198)
.+ .....+..++ ++... .......+...+...+.|+++|+||.|+.- +....+..+.+.+.. .
T Consensus 143 ~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~ 218 (413)
T 1tq4_A 143 KM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 218 (413)
T ss_dssp HT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred Hc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112344444 67654 355556667777777899999999999751 112333444444432 1
Q ss_pred hccCCCCCcEEecc--CCCCChHHHHHHHHHhhccc
Q 029158 163 ANNSLVQPVMMVSS--KSGAGIRSLRTVLSKIARFA 196 (198)
Q Consensus 163 ~~~~~~~~v~~~Sa--~~~~gi~~l~~~i~~~~~~~ 196 (198)
.......++|++|+ ..+.|++++.+.+.+.++..
T Consensus 219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 21112357899999 56677999999999877643
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.47 E-value=1.3e-13 Score=110.79 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHh------cCccceeecCCC--Cce---------e-EEEEEE----------------
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKP--GLT---------Q-TINFFK---------------- 64 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~------~~~~~~~~~~~~--~~t---------~-~~~~~~---------------- 64 (198)
.....|+++|.+|+||||++++|. +. ++..+...+ +.. + .+.++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence 345689999999999999999998 44 333222211 000 0 011111
Q ss_pred ----eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcE-EEEE
Q 029158 65 ----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVL 139 (198)
Q Consensus 65 ----~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~ 139 (198)
.+.++.||||||..... .. .+.++. .... ...+|.+++|+|+..+.. .....+.+.+. .|+ .+|+
T Consensus 178 ~~~~~~~DvvIIDTpG~~~~~--~~---l~~el~-~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVl 247 (504)
T 2j37_W 178 KFKNENFEIIIVDTSGRHKQE--DS---LFEEML-QVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIV 247 (504)
T ss_dssp HHHHTTCCEEEEEECCCCTTC--HH---HHHHHH-HHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEE
T ss_pred HHHHCCCcEEEEeCCCCcccc--hh---HHHHHH-HHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEE
Confidence 35689999999975421 11 111111 1111 124899999999987532 34444444442 675 8999
Q ss_pred eccCCCCcHHHHHHHHHHHHHHHh------------ccCCCCCcEEeccCCCCC-hHHHHHHHHHh
Q 029158 140 TKTDTVFPIDVARRAMQIEESLKA------------NNSLVQPVMMVSSKSGAG-IRSLRTVLSKI 192 (198)
Q Consensus 140 nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~Sa~~~~g-i~~l~~~i~~~ 192 (198)
||+|....... ... +.+.+.. ......|.+++|+..|.| +++|++++.+.
T Consensus 248 NK~D~~~~~g~--~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 248 TKLDGHAKGGG--ALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ECTTSCCCCTH--HHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eCCccccchHH--HHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99999854322 111 1111100 001123456789999999 99999999865
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.42 E-value=2.5e-13 Score=105.76 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEE--------------------eCCceEEEeCCCCcc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--------------------LGTKLCLVDLPGYGF 79 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--------------------~~~~~~iiDtpG~~~ 79 (198)
...+|+++|.+|+|||||+|+|++.. ....+++++|.+..... .+..+.+|||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 45689999999999999999999974 36677777776533211 133599999999854
Q ss_pred ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
..... ..+...++.....+|++++|+|+.+
T Consensus 99 ~as~~------~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNG------QGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchh------hHHHHHHHHHHHhcCeEEEEEecCC
Confidence 32110 1222234444556999999999975
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=6.8e-14 Score=109.15 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEE--Ee-C-----------------CceEEEeCCCCcc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G-----------------TKLCLVDLPGYGF 79 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~-~-----------------~~~~iiDtpG~~~ 79 (198)
...+++++|++|+|||||+|.|++. ..+...+++++|.+.... .. + ..+.++|+||+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3568999999999999999999997 444678888877653211 11 1 3589999999754
Q ss_pred ccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 029158 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 115 (198)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 115 (198)
..... +.+...++.....+|.+++|+|+..
T Consensus 98 ~~s~~------e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTG------VGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSS------SSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHH------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33221 1111233444445899999999865
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.30 E-value=1.2e-11 Score=94.29 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=73.9
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCC-------CCCCcC-cH---HHHHHHHh----
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVKPR-DH---ELISLMER---- 130 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~-------~~~~~~-~~---~~~~~~~~---- 130 (198)
+..+.+|||+|. +.+......|+.. ++++++|+|.+ +.-... .. .+++.+..
T Consensus 166 ~v~l~iwDtgGQ----------e~~R~~w~~yf~~---~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQ----------RSERRKWIHCFEN---VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCS----------HHHHTTGGGGCSS---CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCc----------hhHHHHHHHHhCC---CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 567899999995 1223333344443 89999999875 211111 12 23333332
Q ss_pred hCCcEEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhcc---CCCCCcEEeccCCCCChHHHHHHH
Q 029158 131 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVL 189 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~v~~~Sa~~~~gi~~l~~~i 189 (198)
.++|+++++||+|+... .+.++..+.+...+.... ...+.++++||+++.|++.+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 26899999999998642 234455556555555432 224567899999999999999988
Q ss_pred HHhh
Q 029158 190 SKIA 193 (198)
Q Consensus 190 ~~~~ 193 (198)
.+.+
T Consensus 313 ~~~I 316 (327)
T 3ohm_A 313 KDTI 316 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 210
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.27 E-value=6.8e-11 Score=90.50 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=73.9
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC-------CC-CcCcH---HHHHHHHh----
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GV-KPRDH---ELISLMER---- 130 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-------~~-~~~~~---~~~~~~~~---- 130 (198)
+..+.+|||+|. +.+......|+.. ++++++|+|.++ .. ..... .++..+..
T Consensus 160 ~v~l~iwDtaGQ----------e~~R~~w~~yy~~---a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGGQ----------RSERKXWVSFFSD---VDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCSC----------HHHHHHHHTTSCS---CSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCCc----------ccccccHHHHhcc---CCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 578999999995 2223444445544 899999999972 11 11112 23333322
Q ss_pred hCCcEEEEEeccCCCCc-----------------HHHHHHHHHHHHHH------HhccC--------------CCCCcEE
Q 029158 131 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESL------KANNS--------------LVQPVMM 173 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~------~~~~~--------------~~~~v~~ 173 (198)
.++|+++++||+|+... .+.++..+.+.+.+ ..... ..+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 36899999999998542 12445556666655 21111 2366899
Q ss_pred eccCCCCChHHHHHHHHHhh
Q 029158 174 VSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (198)
+||++..+++.+|+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.24 E-value=1.4e-10 Score=82.13 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=92.9
Q ss_pred cCCCCCCCCCeEEEEcC-CCCCHHHHHHHHhcCccceeecCCC-----CceeEEEEEEe---------------------
Q 029158 13 SSSFPAPDLPEIAFAGR-SNVGKSSMLNALTRQWGVVRTSDKP-----GLTQTINFFKL--------------------- 65 (198)
Q Consensus 13 ~~~~~~~~~~~v~~vG~-~~~GKSsli~~l~~~~~~~~~~~~~-----~~t~~~~~~~~--------------------- 65 (198)
.+++-+...|++++.|| -..=+.+|+.+|.....+..+..-+ +....+.+...
T Consensus 8 ~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~ 87 (227)
T 3l82_B 8 LHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRA 87 (227)
T ss_dssp SSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------
T ss_pred HHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhh
Confidence 45566788999999997 2344668999998763222221111 11111110000
Q ss_pred -------CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHH----HHHHh----
Q 029158 66 -------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI----SLMER---- 130 (198)
Q Consensus 66 -------~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~----~~~~~---- 130 (198)
..++-...+||-.+.-.+..+ ..+++.|+.. .|++|||+|+++.-.....+-+ ..+.+
T Consensus 88 ~~~~~~~~~k~~~~~~~~~~~~GGQ~kl----RplWr~Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L 160 (227)
T 3l82_B 88 REEHTSAVNKMFSRHNEGDDQQGSRYSV----IPQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGS 160 (227)
T ss_dssp ---------------------------------CCHHHHHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSC
T ss_pred hhhhhhhhhhcccccCCCccccCcHHHH----HHHHHHHhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhh
Confidence 113445556652221122233 3444555555 8999999999874222222222 22222
Q ss_pred hCCcEEEEEecc-CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158 131 SQTKYQVVLTKT-DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 131 ~~~p~iiv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
.+.|+++.+||. |+...-...++.+.+.- ... ...+.+..|||.+|+|+.+-++||.+.+...|
T Consensus 161 ~gapLLVlANKqqDlp~Ams~~EI~e~L~L--~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 161 SGRPLLVLSCISQGDVKRMPCFYLAHELHL--NLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp SCSCEEEEEEESSTTSCBCCHHHHHHHTTG--GGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CCCeEEEEeCCCcCccCCCCHHHHHHHcCC--cCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 367999999995 78655444444433321 112 24678999999999999999999998876543
No 212
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.19 E-value=1.9e-11 Score=91.67 Aligned_cols=60 Identities=33% Similarity=0.631 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~ 80 (198)
...+++++|.||+|||||+|+|.+. ....+++.+++|+..+....+..+.++||||+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP 178 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCS
T ss_pred CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCC
Confidence 4568999999999999999999997 55678888899988776666788999999998664
No 213
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.18 E-value=2.3e-11 Score=100.32 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=49.2
Q ss_pred CceEEEeCCCCcccc---chhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCc-HHHHHHHHhhCCcEEEEEecc
Q 029158 67 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT 142 (198)
Q Consensus 67 ~~~~iiDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~ 142 (198)
+++.++|.||++... ........+..++..|.... ...++.++++..+..... ..+++.+...+.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~--~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ--ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--SCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--CCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence 579999999976531 12223445566666665543 245666777665444333 455666666678999999999
Q ss_pred CCCCcH
Q 029158 143 DTVFPI 148 (198)
Q Consensus 143 Dl~~~~ 148 (198)
|+....
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998653
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.17 E-value=2e-10 Score=86.19 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=68.2
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcE
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 172 (198)
..+++......+|+|+.|+|++.+.......+-+.+ .++|.++|+||+|+.+....+...+.++ ..+.+++
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~-------~~g~~~i 83 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFE-------NQGIRSL 83 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHH-------TTTCCEE
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHH-------hcCCcEE
Confidence 345666666779999999999987666654444443 4799999999999998544333333222 1246899
Q ss_pred EeccCCCCChHHHHHHHHHhhc
Q 029158 173 MVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
++||+++.|++++++.+.+.+.
T Consensus 84 ~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 84 SINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999998887654
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.08 E-value=3.4e-09 Score=83.73 Aligned_cols=146 Identities=19% Similarity=0.236 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc-----CccceeecCCCC-c-----------eeEEEEEE------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR-----QWGVVRTSDKPG-L-----------TQTINFFK------------------ 64 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~-----~~~~~~~~~~~~-~-----------t~~~~~~~------------------ 64 (198)
....|+++|++|+||||++..|.. ..++..+...+. . .....++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998873 112222211110 0 00000110
Q ss_pred --eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEecc
Q 029158 65 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 142 (198)
Q Consensus 65 --~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 142 (198)
.++++.++||||..... .. ...+ +... .....+|.+++|+|+..+ .......+.+.+.-.+..+|+||+
T Consensus 179 ~~~~~DvVIIDTaGrl~~d--~~---lm~e-l~~i-~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKl 249 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKED--KA---LIEE-MKQI-SNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKL 249 (443)
T ss_dssp HHTTCSEEEEECCCCSSCC--HH---HHHH-HHHH-HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECC
T ss_pred HhCCCCEEEEECCCcccch--HH---HHHH-HHHH-HHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECC
Confidence 23789999999964321 11 1111 1111 112237899999999863 223344444444344567999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158 143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l 185 (198)
|........ . .... ..+.|+.+++. |+++++|
T Consensus 250 D~~~~gG~~--l----s~~~---~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 250 DGSAKGGGA--L----SAVA---ATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSCSSHHHH--H----HHHH---TTCCCEEEEEC--SSSTTCE
T ss_pred CCcccccHH--H----HHHH---HHCCCEEEEEc--CCChHHh
Confidence 998654321 1 1111 12578888875 6666543
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.08 E-value=6.5e-11 Score=87.90 Aligned_cols=58 Identities=28% Similarity=0.561 Sum_probs=41.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeEEEEEEeCCceEEEeCCCCccc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 80 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~iiDtpG~~~~ 80 (198)
.+++++|.+|+|||||+|+|++. .....++.+++|........+.++.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence 68999999999999999999987 44566777888887766666788999999998764
No 217
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.05 E-value=2.5e-10 Score=93.30 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccceeecCCC----CceeEEEEE------EeCCceEEEeCCCCccccchhHHHH
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP----GLTQTINFF------KLGTKLCLVDLPGYGFAYAKEEVKD 88 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~----~~t~~~~~~------~~~~~~~iiDtpG~~~~~~~~~~~~ 88 (198)
....+|+++|.||+|||||+|+|++.. ... +.+ ++|.....+ ..+..+.++||||+.+........+
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~-~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~ 112 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK-KGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQND 112 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS-SCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC-Ccc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHH
Confidence 456789999999999999999999974 221 333 334434332 1356899999999976432111111
Q ss_pred HHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHH
Q 029158 89 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 127 (198)
Q Consensus 89 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~ 127 (198)
.....+...+ ++ ++|+|+..++...+...+..
T Consensus 113 ~~~fala~ll-----ss--~lv~n~~~~i~~~dl~~l~~ 144 (592)
T 1f5n_A 113 SWIFALAVLL-----SS--TFVYNSIGTINQQAMDQLYY 144 (592)
T ss_dssp HHHHHHHHHH-----CS--EEEEEEESCSSHHHHHTTHH
T ss_pred HHHHHHHHHh-----cC--eEEEECCCCccHHHHHHHHH
Confidence 1111111111 22 56677776677666654443
No 218
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.05 E-value=4.8e-10 Score=88.77 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCC------------------------CCceeEE-EE-E-----E
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK------------------------PGLTQTI-NF-F-----K 64 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~------------------------~~~t~~~-~~-~-----~ 64 (198)
...|+++|++|+||||+++.|.... ++..+... .+++.+. .. . .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988631 12211111 0011110 00 0 0
Q ss_pred eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCC-c-EEEEEecc
Q 029158 65 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKT 142 (198)
Q Consensus 65 ~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~ 142 (198)
.+.++.++||||.... + ...+..+ .. +.....+|.+++|+|+..+. ......+.+.. .. | ..+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~---~--~~l~~~l-~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---E--KGLLEEM-KQ-IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSS---H--HHHHHHH-HH-TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccc---c--HHHHHHH-HH-HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCC
Confidence 3578999999997432 1 1111221 11 23333589999999997652 22222333332 35 6 78999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHh------------ccCCCCCcEEeccCCCCC-hHHHHHHHHHh
Q 029158 143 DTVFPIDVARRAMQIEESLKA------------NNSLVQPVMMVSSKSGAG-IRSLRTVLSKI 192 (198)
Q Consensus 143 Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~Sa~~~~g-i~~l~~~i~~~ 192 (198)
|....... ... +...... ......|..++|+..|.| +.+|++.+.+.
T Consensus 249 D~~~~~g~--~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 249 DGSAKGGG--ALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp SSCSTTHH--HHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred CCccchHH--HHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 98754321 111 2221100 000122344667777777 77666665444
No 219
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.04 E-value=7.4e-11 Score=91.09 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=73.4
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC--------cCcH---HHHHHHHh----
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDH---ELISLMER---- 130 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~--------~~~~---~~~~~~~~---- 130 (198)
+..+.+|||+|...- ......|+. .++++++|+|.++--+ .... .+++.+..
T Consensus 192 ~~~l~iwDt~GQe~~----------r~~w~~yf~---~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE----------RKKWIHCFE---GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG----------GGGGGGGCT---TCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh----------hHHHHHHHh---cCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 567999999996321 222233443 3899999999986211 1112 23333332
Q ss_pred hCCcEEEEEeccCCCCc-----------------HHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHHH
Q 029158 131 SQTKYQVVLTKTDTVFP-----------------IDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVL 189 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~i 189 (198)
.+.|+|+++||+|+... ...++....+...+.... ...+.++++||++++|++++++++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 36899999999998521 123344444444433331 235678999999999999999998
Q ss_pred HHhh
Q 029158 190 SKIA 193 (198)
Q Consensus 190 ~~~~ 193 (198)
.+.+
T Consensus 339 ~~~i 342 (353)
T 1cip_A 339 TDVI 342 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=1.4e-09 Score=82.30 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=58.8
Q ss_pred cccceEEEEEeCCCCCC-cCc-HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCC
Q 029158 102 VSLKRVCLLIDTKWGVK-PRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 179 (198)
Q Consensus 102 ~~~d~vi~v~d~~~~~~-~~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~ 179 (198)
..+|++++|+|+++... ... ..++..+...++|+++|+||+|+.+....++ .++........ .+++++||++|
T Consensus 83 ~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~----~~~~~~~~~~~-~~~~~~SAktg 157 (301)
T 1u0l_A 83 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK----VRELEEIYSGL-YPIVKTSAKTG 157 (301)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH----HHHHHHHHTTT-SCEEECCTTTC
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHH----HHHHHHHHhhh-CcEEEEECCCC
Confidence 44999999999987432 111 3345555556899999999999987554321 22222222222 78999999999
Q ss_pred CChHHHHHHHHH
Q 029158 180 AGIRSLRTVLSK 191 (198)
Q Consensus 180 ~gi~~l~~~i~~ 191 (198)
+|++++++++..
T Consensus 158 ~gv~~lf~~l~g 169 (301)
T 1u0l_A 158 MGIEELKEYLKG 169 (301)
T ss_dssp TTHHHHHHHHSS
T ss_pred cCHHHHHHHhcC
Confidence 999999998754
No 221
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.01 E-value=2.3e-10 Score=88.65 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=70.3
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCC--------CcCc---HHHHHHHHh----
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRD---HELISLMER---- 130 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~~~~---~~~~~~~~~---- 130 (198)
+..+.+|||+|... +......++. .+++++||+|.++-- .... ..++..+..
T Consensus 200 ~~~l~i~Dt~Gq~~----------~r~~w~~~f~---~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRS----------ERKRWFECFD---SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC-----------------CTTSCT---TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhh----------hhhhHHHHhC---CCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 56799999999521 1222233333 489999999998611 1111 223333332
Q ss_pred hCCcEEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhcc----CCCCCcEEeccCCCCChHHHHHH
Q 029158 131 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTV 188 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~----~~~~~v~~~Sa~~~~gi~~l~~~ 188 (198)
.+.|+|+++||+|+... ...++....+...+.... ...+.++++||++++|+++++++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 26899999999998521 223344444444433321 23467899999999999999999
Q ss_pred HHHhh
Q 029158 189 LSKIA 193 (198)
Q Consensus 189 i~~~~ 193 (198)
+.+.+
T Consensus 347 v~~~i 351 (362)
T 1zcb_A 347 VKDTI 351 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=1.3e-09 Score=82.53 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=60.9
Q ss_pred cccccceEEEEEeCCCCCCcCc--HHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
....+|.+++|+|++++..... ..++..+...++|+++|+||+|+.+...... .+...+..... +.+++++||+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~---g~~~~~~SA~ 151 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE-LERWISIYRDA---GYDVLKVSAK 151 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHHT---TCEEEECCTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH-HHHHHHHHHHC---CCeEEEEECC
Confidence 3455999999999987432222 2455566667899999999999987643111 12222222222 4689999999
Q ss_pred CCCChHHHHHHHHH
Q 029158 178 SGAGIRSLRTVLSK 191 (198)
Q Consensus 178 ~~~gi~~l~~~i~~ 191 (198)
+|+|+++|++.+..
T Consensus 152 ~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 152 TGEGIDELVDYLEG 165 (302)
T ss_dssp TCTTHHHHHHHTTT
T ss_pred CCCCHHHHHhhccC
Confidence 99999999988754
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.97 E-value=1.3e-08 Score=80.40 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecC--CCCc----------eeEEEEE-------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSD--KPGL----------TQTINFF------------------- 63 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~--~~~~----------t~~~~~~------------------- 63 (198)
....|+++|++|+||||++..|... ..+..... +... .....++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 3457899999999999999988731 11111110 0000 0000000
Q ss_pred -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEecc
Q 029158 64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 142 (198)
Q Consensus 64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 142 (198)
..++.+.++||||................ .... ..++.+++|+|+..+ .......+.+.+.-.+..+|+||+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~----i~~~-~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKE----MYDV-LKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHH----HHHH-HCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHH----HHHh-hCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecc
Confidence 01468999999995331011111111111 1111 136889999999864 333445555554446678999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChH
Q 029158 143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 183 (198)
Q Consensus 143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~ 183 (198)
|....... ........ +.|+.+++. |++++
T Consensus 249 D~~a~~G~--als~~~~~-------g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 249 DGTAKGGG--ALSAVVAT-------GATIKFIGT--GEKID 278 (433)
T ss_dssp GGCSCHHH--HHHHHHHH-------TCEEEEEEC--CSSSS
T ss_pred cccccchH--HHHHHHHH-------CCCEEEEEC--CCChH
Confidence 98764432 22222211 478888875 66664
No 224
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.97 E-value=2e-09 Score=83.76 Aligned_cols=101 Identities=11% Similarity=-0.002 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhccCCC
Q 029158 90 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLV 168 (198)
Q Consensus 90 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 168 (198)
+...+.++... ++++++|+|+++.......++.+.+. +.|+++|+||+|+.+... .+...+.+++.+.......
T Consensus 61 f~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~ 135 (369)
T 3ec1_A 61 FLSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCP 135 (369)
T ss_dssp HHHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCc
Confidence 34455555443 78999999998743222222222222 789999999999986532 2233334443333332212
Q ss_pred CCcEEeccCCCCChHHHHHHHHHhhcc
Q 029158 169 QPVMMVSSKSGAGIRSLRTVLSKIARF 195 (198)
Q Consensus 169 ~~v~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (198)
.+++++||++|+|++++++.+.+....
T Consensus 136 ~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 136 VDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 468999999999999999999876543
No 225
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=1.8e-09 Score=84.00 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHh--hCCcEEEEEeccCCCCcHH-HHHHHHHHHHHHHhc
Q 029158 88 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKAN 164 (198)
Q Consensus 88 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~ 164 (198)
+.+..+++++... ++++++|+|+++. +..+...+.+ .+.|+++|+||+|+.+... .+...+.++......
T Consensus 57 e~f~~~l~~i~~~---~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 57 DDFLRILNGIGKS---DALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp HHHHHHHHHHHHS---CCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc---CcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 4445566666554 7899999999762 1222222322 2789999999999976532 222333333333332
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHHHhhc
Q 029158 165 NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194 (198)
Q Consensus 165 ~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~ 194 (198)
.....+++.+||++|+|+++++++|.+...
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 221237899999999999999999987543
No 226
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.87 E-value=1.5e-09 Score=83.86 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC-------CC-CcCcH---HHHHHHHh----
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GV-KPRDH---ELISLMER---- 130 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-------~~-~~~~~---~~~~~~~~---- 130 (198)
...+.+|||+|...- ..+...|+. .++++++|+|.++ .. ..... .+++.+..
T Consensus 182 ~v~l~iwDtaGQe~~----------r~~~~~y~~---~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE----------RRKWIHLFE---GVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG----------GGGTGGGCT---TEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh----------hHHHHHHhC---CCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 357999999996321 222333443 3899999999862 11 11112 23333332
Q ss_pred hCCcEEEEEeccCCCCcH-----------------------HHHHHHHHHHHHHHhc----c-----CCCCCcEEeccCC
Q 029158 131 SQTKYQVVLTKTDTVFPI-----------------------DVARRAMQIEESLKAN----N-----SLVQPVMMVSSKS 178 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~~~----~-----~~~~~v~~~Sa~~ 178 (198)
.+.|+++|+||+|+.... +.++..+.+.+.+... . .....++++||++
T Consensus 249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d 328 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALD 328 (354)
T ss_dssp SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTC
T ss_pred CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeec
Confidence 268999999999984211 1223333333332211 0 1234468999999
Q ss_pred CCChHHHHHHHHHhh
Q 029158 179 GAGIRSLRTVLSKIA 193 (198)
Q Consensus 179 ~~gi~~l~~~i~~~~ 193 (198)
++|++++++++.+.+
T Consensus 329 ~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 329 QKLVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 999999999987754
No 227
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.83 E-value=1e-08 Score=76.15 Aligned_cols=99 Identities=6% Similarity=-0.039 Sum_probs=64.4
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCcCcHHHH----HHHHh----hCCcEEEEEec-cCCCCcHHHHHHHHHHHHHHHh
Q 029158 93 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI----SLMER----SQTKYQVVLTK-TDTVFPIDVARRAMQIEESLKA 163 (198)
Q Consensus 93 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~----~~~~~----~~~p~iiv~nK-~Dl~~~~~~~~~~~~~~~~~~~ 163 (198)
+.+.|+.. .|++|||+|+++.......+-+ ..+.+ .+.|+++.+|| .|+...-...++.+.+.- ..
T Consensus 203 lWr~Yy~~---tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L--~~ 277 (312)
T 3l2o_B 203 QIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHL--NL 277 (312)
T ss_dssp HHHHHHHH---CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTG--GG
T ss_pred HHHHHhcC---CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCC--cc
Confidence 34445544 8999999999874332222212 22211 47899999997 688765444444433331 11
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHHHhhcccc
Q 029158 164 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 197 (198)
Q Consensus 164 ~~~~~~~v~~~Sa~~~~gi~~l~~~i~~~~~~~r 197 (198)
. .....+..+||.+|+|+.+-++|+.+.+...|
T Consensus 278 l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 278 L-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp G-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred C-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 1 23677999999999999999999999886544
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.82 E-value=3e-09 Score=78.96 Aligned_cols=85 Identities=9% Similarity=0.007 Sum_probs=59.8
Q ss_pred HHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEec
Q 029158 96 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175 (198)
Q Consensus 96 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 175 (198)
++......+|+++.|+|++.+.......+- .+ ++|.++|+||+|+.+....+...+.+++ .+.++ ++|
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~-------~g~~v-~iS 81 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFKK-------QGKRV-ITT 81 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHHH-------TTCCE-EEC
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHHH-------cCCeE-EEE
Confidence 444445569999999999986555432211 22 7999999999999986544333333322 14577 999
Q ss_pred cCCCCChHHHHHHHHHh
Q 029158 176 SKSGAGIRSLRTVLSKI 192 (198)
Q Consensus 176 a~~~~gi~~l~~~i~~~ 192 (198)
|+++.|+++|++++...
T Consensus 82 a~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 82 HKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp CTTSCHHHHHHHHCCCT
T ss_pred CCCCcCHHHHHHHHHHh
Confidence 99999999999887654
No 229
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.78 E-value=8e-09 Score=80.80 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=69.6
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCC-------CC-CcCc---HHHHHHHHh----
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GV-KPRD---HELISLMER---- 130 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-------~~-~~~~---~~~~~~~~~---- 130 (198)
+..+.+|||+|...- ......|+.. ++++++|+|.++ +. .... ..+++.+..
T Consensus 216 ~v~l~iwDtaGQe~~----------r~~w~~yf~~---a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRDE----------RRKWIQCFND---VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGGG----------GGGGGGGTTT---CCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhhh----------hhhhHhhccC---CCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 567899999996221 2223344443 899999999986 10 1111 223344432
Q ss_pred hCCcEEEEEeccCCCCcH--------------------------------HHHHHHHHHHHHHHhc------cCCCCCcE
Q 029158 131 SQTKYQVVLTKTDTVFPI--------------------------------DVARRAMQIEESLKAN------NSLVQPVM 172 (198)
Q Consensus 131 ~~~p~iiv~nK~Dl~~~~--------------------------------~~~~~~~~~~~~~~~~------~~~~~~v~ 172 (198)
.+.|+++|+||+|+.... ..++....+.+.+... ....+.++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 258999999999984321 1122223332222221 11235578
Q ss_pred EeccCCCCChHHHHHHHHHhh
Q 029158 173 MVSSKSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (198)
++||++++|++++|+++.+.+
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHH
Confidence 999999999999999987754
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.75 E-value=1.1e-07 Score=71.69 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=77.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----ccceeecCCC--C---------------------ceeE--------EEEEE
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKP--G---------------------LTQT--------INFFK 64 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~-----~~~~~~~~~~--~---------------------~t~~--------~~~~~ 64 (198)
...++++|++|+||||++..|... ..+....... + ...+ .....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999988732 1111111110 0 0000 00001
Q ss_pred -eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEecc
Q 029158 65 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT 142 (198)
Q Consensus 65 -~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 142 (198)
.++.+.++||||.......+. ...+ +..+ .....+|.+++|+|+..+ .......+.+.+ ..+ ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~---l~~e-l~~i-~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAA---LLEE-MKNI-YEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHH---HHHH-HHHH-HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHH---HHHH-HHHH-HHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence 356899999999654100011 1111 1111 112247899999999753 233333444443 466 67899999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158 143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l 185 (198)
|....... .. +... ..+.|+.+++ .|++++++
T Consensus 250 D~~~~~g~--~~----~~~~---~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTAKGGG--AL----SAVA---ATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCTTHHH--HH----HHHH---TTTCCEEEEE--CSSSTTCE
T ss_pred CCCcchHH--HH----HHHH---HHCcCEEEEe--CCCChhhc
Confidence 98754321 11 1111 1247888876 57776654
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.63 E-value=4e-07 Score=69.59 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCC---Cc-------e--eEEEEE-------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKP---GL-------T--QTINFF------------------- 63 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~---~~-------t--~~~~~~------------------- 63 (198)
....++++|++||||||+++.|.+.. .+...+... .. . ..+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34578999999999999999988531 111110000 00 0 000010
Q ss_pred -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEecc
Q 029158 64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 142 (198)
Q Consensus 64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 142 (198)
..+..+.++||+|....... .......+ ...-.+|-.++++|+..+ ......++.+.+.-....+++||.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~--l~~eL~~i-----~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRN--LMDEMKKI-----ARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTC--HHHHHHHH-----HHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECG
T ss_pred HhccchhhHHhhccchhHHHH--HHHHHHHH-----HHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 01356789999997432111 11111111 111236889999998754 222233343433233458899999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158 143 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 143 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l 185 (198)
|....... ......+. +.|+.+++ +|++++++
T Consensus 279 D~~a~~G~--~l~~~~~~-------~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 279 DADARGGA--ALSISYVI-------DAPILFVG--VGQGYDDL 310 (328)
T ss_dssp GGCSCCHH--HHHHHHHH-------TCCEEEEE--CSSSTTCE
T ss_pred CCccchhH--HHHHHHHH-------CCCEEEEe--CCCCcccc
Confidence 97543321 11222211 47888887 77776543
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.52 E-value=9e-08 Score=72.36 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=57.5
Q ss_pred cccccceEEEEEeCCCCCCcCcH--HHHHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 100 TRVSLKRVCLLIDTKWGVKPRDH--ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 100 ~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
...++|.+++|+|+..+...... .++..+...++|.++|+||+|+.++....+....+.+.+... +.+++.+||.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~---g~~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI---GYDVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH---TCCEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC---CCeEEEEecC
Confidence 35569999999999875444431 122233456899999999999998754211122233332221 4689999999
Q ss_pred CCCChHHHHHHH
Q 029158 178 SGAGIRSLRTVL 189 (198)
Q Consensus 178 ~~~gi~~l~~~i 189 (198)
++.|+++|++..
T Consensus 160 ~~~g~~~L~~~~ 171 (307)
T 1t9h_A 160 DQDSLADIIPHF 171 (307)
T ss_dssp HHTTCTTTGGGG
T ss_pred CCCCHHHHHhhc
Confidence 999998877644
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.40 E-value=1.8e-06 Score=68.35 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh-------cCccceeecCCCCce------------eEEE-------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALT-------RQWGVVRTSDKPGLT------------QTIN------------------- 61 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~-------~~~~~~~~~~~~~~t------------~~~~------------------- 61 (198)
....|+++|.+|+||||++..|. +. ++..+...+... ....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999887 32 222221111000 0000
Q ss_pred EEE-eCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEE
Q 029158 62 FFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVL 139 (198)
Q Consensus 62 ~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~ 139 (198)
... .++++.|+||||..... . .....+. . ......++.+++|+|+..+ .......+.+.. ..+ .-+|+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~--~---~l~~~L~-~-~~~~~~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVl 247 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVD--E---AMMDEIK-Q-VHASINPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVL 247 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTC--H---HHHHHHH-H-HHHHSCCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEE
T ss_pred HHHhCCCCEEEEECCCccccc--H---HHHHHHH-H-HHHhhcCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEE
Confidence 001 25689999999964321 0 1111111 1 1112247889999999764 222333333332 355 34799
Q ss_pred eccCCCCcH
Q 029158 140 TKTDTVFPI 148 (198)
Q Consensus 140 nK~Dl~~~~ 148 (198)
||+|.....
T Consensus 248 nK~D~~~~~ 256 (433)
T 2xxa_A 248 TKVDGDARG 256 (433)
T ss_dssp ECTTSSSCC
T ss_pred ecCCCCccH
Confidence 999986543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.35 E-value=2.6e-06 Score=67.57 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC-----------------ccceeecCCCCceeEEEEEEe----------CCceEE
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ-----------------WGVVRTSDKPGLTQTINFFKL----------GTKLCL 71 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~-----------------~~~~~~~~~~~~t~~~~~~~~----------~~~~~i 71 (198)
...-.|+++|++++|||||+|.|++. ...........+|..+-.+.. +..+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34567999999999999999999863 001111122334444433321 246999
Q ss_pred EeCCCCccc
Q 029158 72 VDLPGYGFA 80 (198)
Q Consensus 72 iDtpG~~~~ 80 (198)
+||||+.+.
T Consensus 145 lDTeG~~~~ 153 (447)
T 3q5d_A 145 MDTQGTFDS 153 (447)
T ss_dssp EEEECCCSS
T ss_pred EcCCccccc
Confidence 999998764
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.29 E-value=3.8e-06 Score=64.76 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=52.8
Q ss_pred ccccceEEEEEeCCCCCCcCcHHH---HHHHHhhCCcEEEEEeccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccC
Q 029158 101 RVSLKRVCLLIDTKWGVKPRDHEL---ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 177 (198)
Q Consensus 101 ~~~~d~vi~v~d~~~~~~~~~~~~---~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~ 177 (198)
..++|.+++| ++..+ ......+ +-.....++|.++|+||+|+.+....+ ..+.+...+. ..+.+++++||+
T Consensus 128 ~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~-~~~~~~~~y~---~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMD-FVNEQMDIYR---NIGYRVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHH-HHHHHHHHHH---TTTCCEEECBTT
T ss_pred HhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHH-HHHHHHHHHH---hCCCcEEEEecC
Confidence 3568888866 55442 2222222 222345689999999999999865421 1222222222 335789999999
Q ss_pred CCCChHHHHHHH
Q 029158 178 SGAGIRSLRTVL 189 (198)
Q Consensus 178 ~~~gi~~l~~~i 189 (198)
++.|+++|...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999988765
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.26 E-value=1.1e-05 Score=60.97 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
...++++|++||||||+++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999884
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.25 E-value=6.8e-06 Score=65.76 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-----cceeecCCCCc--------e----eEEEEE-------------------
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGL--------T----QTINFF------------------- 63 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~~-----~~~~~~~~~~~--------t----~~~~~~------------------- 63 (198)
..-.++++|+.|||||||++.|.+.. .+......... . ..+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 44578999999999999999987531 12211111000 0 000000
Q ss_pred -EeCCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEe
Q 029158 64 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 140 (198)
Q Consensus 64 -~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n 140 (198)
..+..+.++||+|..... .........+.+- .+.. ...+-+++++|+..+ ......++.+...--...+|+|
T Consensus 372 ~~~~~DvVLIDTaGrl~~~--~~lm~EL~kiv~i-ar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNK--SHLMEELKKIVRV-MKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp HHTTCSEEEECCCCSCCCH--HHHHHHHHHHHHH-HHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEEE
T ss_pred HhcCCCEEEEeCCCccchh--hhHHHHHHHHHHH-HHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEEE
Confidence 023578999999974321 1111111112111 1111 125678999998753 2223333434332223468999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhccCCCCCcEEeccCCCCChHHH
Q 029158 141 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185 (198)
Q Consensus 141 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~~~gi~~l 185 (198)
|.|-...... .... .... +.|+.++ -+|+++++|
T Consensus 447 KLD~takgG~--~lsi-~~~~------~~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 447 KLDGTAKGGV--IFSV-ADQF------GIPIRYI--GVGERIEDL 480 (503)
T ss_dssp CGGGCSCCTH--HHHH-HHHH------CCCEEEE--ECSSSGGGE
T ss_pred cCCCcccccH--HHHH-HHHH------CCCEEEE--ecCCChhhc
Confidence 9997543221 1111 1111 4677775 456666543
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.20 E-value=2.1e-05 Score=62.03 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhCCc-EEEEEeccCC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 144 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 144 (198)
++.+.++||||..... . ....++. .. .....+|.+++|+|+..+ .......+.+.. ..+ .-+|+||+|.
T Consensus 180 ~~DvVIIDTaG~l~~d--~---~l~~el~-~i-~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 180 ARDLILVDTAGRLQID--E---PLMGELA-RL-KEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG 249 (425)
T ss_dssp TCSEEEEECCCCSSCC--H---HHHHHHH-HH-HHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGG
T ss_pred CCCEEEEcCCCccccc--H---HHHHHHH-Hh-hhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCC
Confidence 4679999999964321 1 1111110 11 111247889999999753 222223333332 233 5679999998
Q ss_pred CCc
Q 029158 145 VFP 147 (198)
Q Consensus 145 ~~~ 147 (198)
...
T Consensus 250 ~~~ 252 (425)
T 2ffh_A 250 DAR 252 (425)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.18 E-value=6.3e-06 Score=62.32 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
....|+++|++|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 344689999999999999998874
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.17 E-value=5.2e-07 Score=68.19 Aligned_cols=57 Identities=33% Similarity=0.523 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccceeecCC-------CCceeEEEEEEeCCceEEEeCCCCcc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
-..++++|++|+|||||+|.|.+... ...+.. ..+|......... .-.++||||+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS 236 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence 35799999999999999999998631 112211 1234333333333 457899999754
No 241
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.15 E-value=3e-05 Score=59.00 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
.....|+++|++|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999998774
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.07 E-value=7.9e-06 Score=61.75 Aligned_cols=55 Identities=33% Similarity=0.422 Sum_probs=34.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCC-------CceeEEEEEEeCCceEEEeCCCCc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG 78 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~iiDtpG~~ 78 (198)
..++++|++|+|||||+|.|. .. ....+... .+|...........-.++||||+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 468999999999999999998 53 12222211 133332333333345789999974
No 243
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.05 E-value=7e-05 Score=56.34 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
....++++|++|+||||++..|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344688999999999999998874
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.04 E-value=3.6e-06 Score=64.87 Aligned_cols=58 Identities=34% Similarity=0.408 Sum_probs=36.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCC---C----ceeEEEEEEeCCceEEEeCCCCcc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---G----LTQTINFFKLGTKLCLVDLPGYGF 79 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~---~----~t~~~~~~~~~~~~~iiDtpG~~~ 79 (198)
..++++|++|+|||||+|.|++.......+... + +|....+........++||||+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 478999999999999999999863201111111 1 333334444444567899999643
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.03 E-value=6.1e-06 Score=62.16 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
....++++|++|+||||++..|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 246
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.00 E-value=6.9e-05 Score=56.97 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+.++++|+.|||||||++.|++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3567899999999999999999965
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.96 E-value=5e-06 Score=58.77 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=23.6
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 16 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 16 ~~~~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.|+.....|+++|++|+|||||++.|++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 45555667899999999999999999875
No 248
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.95 E-value=7.9e-06 Score=61.73 Aligned_cols=56 Identities=36% Similarity=0.468 Sum_probs=33.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccceeecCCC-------CceeEEEEEEeCCceEEEeCCCCc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG 78 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~iiDtpG~~ 78 (198)
..++++|++|+|||||+|.|.+... ...+... .+|...........-.++|+||+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred CeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 4689999999999999999998632 1111111 122222222222345789999964
No 249
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.74 E-value=0.00026 Score=56.06 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=40.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc-------C----------ccceeecCCCCceeEEEEEEe----------CCceEE
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTR-------Q----------WGVVRTSDKPGLTQTINFFKL----------GTKLCL 71 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~-------~----------~~~~~~~~~~~~t~~~~~~~~----------~~~~~i 71 (198)
.....|+++|++++|||+|+|.|++ . ...........+|..+-.+.. +..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3556788999999999999996652 1 111222233445665543321 235999
Q ss_pred EeCCCCccccc
Q 029158 72 VDLPGYGFAYA 82 (198)
Q Consensus 72 iDtpG~~~~~~ 82 (198)
+||.|+++...
T Consensus 145 lDTEG~~d~~~ 155 (457)
T 4ido_A 145 MDTQGTFDSQS 155 (457)
T ss_dssp EEECCBTCTTC
T ss_pred EeccCCCCccc
Confidence 99999876543
No 250
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.72 E-value=1.3e-05 Score=56.08 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=24.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCccceeecCCCCceeE
Q 029158 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 59 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~ 59 (198)
|+++||+|+|||||++.|+....-...-..+.||+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 789999999999999999865211122334445544
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.71 E-value=2.3e-05 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999875
No 252
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.71 E-value=0.00059 Score=48.04 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=42.4
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-----CCcEEEEEe
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT 140 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~n 140 (198)
.+++.++|||+.... .....+. .+|.+++++..+... .....+++.+... +.++.+|+|
T Consensus 75 ~yD~viiD~~~~~~~------------~~~~~l~---~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV------------ITSAAVM---VSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSSSH------------HHHHHHH---HCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred CCCEEEEECCCCCCH------------HHHHHHH---HCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 468999999985321 1111111 289999999987644 4444556666543 467899999
Q ss_pred ccCCCC
Q 029158 141 KTDTVF 146 (198)
Q Consensus 141 K~Dl~~ 146 (198)
++|...
T Consensus 139 ~~~~~~ 144 (206)
T 4dzz_A 139 RKIEMA 144 (206)
T ss_dssp SBCTTE
T ss_pred ccCCCc
Confidence 999654
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.66 E-value=2.5e-05 Score=54.39 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+++++|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.65 E-value=2.3e-05 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|||||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.56 E-value=5.7e-05 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++|||||||++.|.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999876
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.51 E-value=5.4e-05 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999875
No 257
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.50 E-value=0.011 Score=45.51 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=52.6
Q ss_pred cceEEEEEeCCCCCCcCcHHHHHHHHhhCCcEE-EEEeccCCCC--cHHHHH----HHHHHHHHHHhccCCCCCcEEecc
Q 029158 104 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVF--PIDVAR----RAMQIEESLKANNSLVQPVMMVSS 176 (198)
Q Consensus 104 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~--~~~~~~----~~~~~~~~~~~~~~~~~~v~~~Sa 176 (198)
.+.+++|.-+...........++.++..+.|+. +|+|++.... +..... ....+++..........-.+|...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~ 316 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLR 316 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 366788877654323334556777788888885 7999998653 221111 122222222223233344677888
Q ss_pred CCCCChHHHHHHHHHhh
Q 029158 177 KSGAGIRSLRTVLSKIA 193 (198)
Q Consensus 177 ~~~~gi~~l~~~i~~~~ 193 (198)
..-.|++.|........
T Consensus 317 ~e~~g~~~L~~~~~~l~ 333 (349)
T 3ug7_A 317 TEAKGIETLKQIAKILY 333 (349)
T ss_dssp SCSCSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 88889888877655443
No 258
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.50 E-value=6.5e-05 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999875
No 259
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.50 E-value=4.7e-05 Score=54.15 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-.++++|++|||||||++.|.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999875
No 260
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.50 E-value=5.4e-05 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....++++|++|||||||++.|.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446899999999999999999875
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.49 E-value=4.8e-05 Score=53.17 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.++++|++|||||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 262
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.48 E-value=0.00041 Score=49.34 Aligned_cols=66 Identities=6% Similarity=-0.024 Sum_probs=41.9
Q ss_pred CCceEEEeCCCC-ccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh-CCcEEEEEeccC
Q 029158 66 GTKLCLVDLPGY-GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD 143 (198)
Q Consensus 66 ~~~~~iiDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D 143 (198)
.+++.++|||+. ... .....+. .+|.+++++..+.........+++.++.. +.++.+|+|++|
T Consensus 67 ~yD~viiD~p~~~~~~------------~~~~~l~---~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~ 131 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE------------DLEALAD---GCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP 131 (209)
T ss_dssp GCSEEEEEEECCCSSS------------HHHHHHH---TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred cCCEEEEeCCCCcCcH------------HHHHHHH---HCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence 468999999985 321 1111222 38999999988642122223455666553 677889999999
Q ss_pred CCC
Q 029158 144 TVF 146 (198)
Q Consensus 144 l~~ 146 (198)
...
T Consensus 132 ~~~ 134 (209)
T 3cwq_A 132 PYP 134 (209)
T ss_dssp CTT
T ss_pred Ccc
Confidence 865
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.48 E-value=6.1e-05 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....|+++|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999875
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.46 E-value=6.3e-05 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.++..
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCG
T ss_pred EEEEEECCCCCCHHHHHHHHccC
Confidence 35899999999999999987654
No 265
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.45 E-value=0.00047 Score=54.39 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999875
No 266
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0014 Score=51.92 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..-|++.||||+|||+|+.++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999986
No 267
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.44 E-value=7.4e-05 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 268
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.43 E-value=8.3e-05 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...++++|++|||||||++.|++.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346899999999999999999886
No 269
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.43 E-value=8e-05 Score=54.15 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+.+-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 346899999999999999999986
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.42 E-value=9.5e-05 Score=51.18 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.+.++++|++|+|||||++.|+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999874
No 271
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.40 E-value=9.3e-05 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++||||||+.+.|...
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998764
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.00012 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....|+++|++||||||+.+.|...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 273
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.37 E-value=0.00015 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999886
No 274
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.36 E-value=0.0001 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+.+-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999986
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.36 E-value=0.00016 Score=50.38 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=22.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
......|+++|++||||||+.+.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344568999999999999999998764
No 276
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.36 E-value=0.00013 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++|||||||++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999764
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.35 E-value=0.00012 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.34 E-value=0.00012 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+++-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999986
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.34 E-value=0.00013 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 280
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.33 E-value=0.00013 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999986
No 281
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.33 E-value=0.00013 Score=51.50 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++|||||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.33 E-value=0.00011 Score=49.97 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999885
No 283
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.33 E-value=4.5e-05 Score=52.68 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...++++|++|||||||++.|.+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.00013 Score=49.91 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCCHHHHHHHH
Q 029158 22 PEIAFAGRSNVGKSSMLNAL 41 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l 41 (198)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.33 E-value=0.00011 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999875
No 286
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.33 E-value=0.00015 Score=52.86 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh
Q 029158 21 LPEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~ 42 (198)
...|+++|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 287
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.00014 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|++||||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 288
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.33 E-value=0.00012 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+.+-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999986
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.32 E-value=0.00014 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+++.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 346899999999999999998763
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.32 E-value=0.00013 Score=54.08 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+.+-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 346899999999999999999986
No 291
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.32 E-value=0.00013 Score=53.27 Aligned_cols=24 Identities=46% Similarity=0.545 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999975
No 292
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.31 E-value=0.00013 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999986
No 293
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.31 E-value=0.00013 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999986
No 294
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.30 E-value=0.0002 Score=50.47 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 17 ~~~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
++.....|+++|.+||||||+.+.|...
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4445568999999999999999998754
No 295
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.30 E-value=0.00012 Score=54.05 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-.++++|++|||||||++.+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 346899999999999999999874
No 296
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.30 E-value=0.00013 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999986
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.30 E-value=0.00011 Score=51.22 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 029158 23 EIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~ 43 (198)
.++++|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999976
No 298
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.30 E-value=0.00014 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999986
No 299
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0022 Score=50.17 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-|++.||||+|||+|+.++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 45999999999999999999886
No 300
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.29 E-value=0.00014 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+.+-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999986
No 301
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.0002 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 302
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.27 E-value=0.00016 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+.+-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 346899999999999999999986
No 303
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.27 E-value=0.00016 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999986
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.26 E-value=0.00016 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.|.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46899999999999999999986
No 305
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.26 E-value=0.00013 Score=54.96 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..-.++++|++|+|||||++.|.+-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3456899999999999999998864
No 306
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.26 E-value=0.00019 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+.|+++|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.25 E-value=0.00012 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.25 E-value=0.00017 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.|++-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999986
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.25 E-value=0.00018 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999985
No 310
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.25 E-value=0.00018 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+.+-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999986
No 311
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.24 E-value=0.00018 Score=53.02 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.|++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999986
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.24 E-value=0.0002 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 313
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.24 E-value=0.00018 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999985
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.23 E-value=0.00018 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++||||||+++.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998875
No 315
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.22 E-value=0.00026 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|.+|+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999999864
No 316
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.22 E-value=0.00019 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999986
No 317
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.0025 Score=51.65 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||+++..+...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.21 E-value=0.00016 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.++++|++|+|||||++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999875
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.21 E-value=0.0002 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+.+-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999986
No 320
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.20 E-value=0.003 Score=46.12 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....+++.|++|+|||+++.++.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999875
No 321
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00071 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-|++.||||+|||+|+.++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999986
No 322
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.19 E-value=0.00021 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+.+-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999986
No 323
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.19 E-value=0.0003 Score=48.66 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+.|+++|++|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456999999999999999998753
No 324
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.19 E-value=0.00026 Score=48.64 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+.++++|++|||||||+.+|...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999998753
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.19 E-value=0.0002 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 326
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.00016 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||||++.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999875
No 327
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.18 E-value=0.00024 Score=50.25 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
..|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 328
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.18 E-value=0.00074 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~ 42 (198)
....|++.|..|+||||+.-.|.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHH
Confidence 34568888999999999987765
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.17 E-value=0.00022 Score=49.10 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 330
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.17 E-value=0.00013 Score=52.64 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh-cC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALT-RQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~-~~ 44 (198)
...++++|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999999 64
No 331
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.17 E-value=0.00022 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|++.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 332
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00068 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..-|++.||||+|||+|+.++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999986
No 333
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.17 E-value=0.00013 Score=55.07 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|++|||||||++.|++-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 347999999999999999999986
No 334
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.16 E-value=0.00027 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 335
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.15 E-value=0.00025 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.+++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999986
No 336
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0036 Score=47.46 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+.+.+.|+||+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999865
No 337
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.12 E-value=0.00027 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.|+++|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 338
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.11 E-value=0.00031 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999864
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.11 E-value=0.00043 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++||||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998753
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.11 E-value=0.00028 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++|||||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4457999999999999999999875
No 341
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.10 E-value=0.00025 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+.+-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 46899999999999999999986
No 342
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.09 E-value=0.00028 Score=51.29 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 029158 22 PEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~ 42 (198)
-.++++|++|||||||++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999887
No 343
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00033 Score=49.26 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....|+++|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34567999999999999999998764
No 344
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.09 E-value=0.001 Score=48.98 Aligned_cols=64 Identities=6% Similarity=-0.082 Sum_probs=38.5
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhh--CCcEEEEEeccC
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTD 143 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D 143 (198)
.+++.++|||+... ......+. .+|.+++++.+..........+++.+... +.++.+|+|+.+
T Consensus 144 ~yD~viiD~pp~~~------------~~~~~~l~---~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD------------VTLKNALL---CSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS------------HHHHHHHT---TCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc------------HHHHHHHH---HCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 35789999997432 11122222 38999999988642111123345555554 457889999995
Q ss_pred C
Q 029158 144 T 144 (198)
Q Consensus 144 l 144 (198)
.
T Consensus 209 ~ 209 (267)
T 3k9g_A 209 K 209 (267)
T ss_dssp T
T ss_pred C
Confidence 3
No 345
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.09 E-value=0.00038 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999764
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.09 E-value=0.00026 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.++++|++|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999864
No 347
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.08 E-value=0.00034 Score=48.61 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|++.|++||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.08 E-value=0.00041 Score=48.24 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+...|+++|.+||||||+.+.|...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998753
No 349
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.07 E-value=0.00024 Score=50.91 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999873
No 350
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.07 E-value=0.0003 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.+++.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999986
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.07 E-value=0.00039 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999753
No 352
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.06 E-value=0.00027 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|||||||++.|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999986
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.05 E-value=0.00035 Score=53.99 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|++|||||||++.+.+-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 346899999999999999999986
No 354
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.05 E-value=0.00031 Score=54.09 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+.+-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999986
No 355
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00036 Score=49.99 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
No 356
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.05 E-value=0.00028 Score=53.89 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|||||||++.|++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999986
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.04 E-value=0.00041 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 358
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.04 E-value=0.00035 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|+.|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.04 E-value=0.00033 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 46899999999999999999986
No 360
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.04 E-value=0.00023 Score=47.96 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....++++|++|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999885
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.04 E-value=0.00053 Score=50.28 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~ 42 (198)
....|+++|++||||||+++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999998
No 362
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.03 E-value=0.00038 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|+++|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998653
No 363
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.03 E-value=0.0004 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 364
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.03 E-value=0.00035 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|++|||||||++.+.+-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 346899999999999999999986
No 365
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.03 E-value=0.00034 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|++|||||||++.+.+-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 346899999999999999999986
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.00055 Score=47.57 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|.+||||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4457899999999999999998764
No 367
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.01 E-value=0.00048 Score=48.12 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 368
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.01 E-value=0.00043 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=22.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....|+++|++|||||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988764
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.01 E-value=0.00041 Score=48.96 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
.....|+++|++|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999876
No 370
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.01 E-value=0.00043 Score=49.80 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998743
No 371
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.01 E-value=0.00027 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+++++|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.00 E-value=0.00049 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|++.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.00 E-value=0.00042 Score=49.36 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|+++|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.00 E-value=0.00037 Score=54.07 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 46899999999999999999986
No 375
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.99 E-value=0.00038 Score=53.96 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|++|||||||++.+.+-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 346899999999999999999986
No 376
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.99 E-value=0.00035 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999864
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.99 E-value=0.00053 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 378
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0016 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..-|++.||||+|||+|+.++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 356999999999999999999986
No 379
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.98 E-value=0.00049 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=21.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....|+++|++|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999988654
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.98 E-value=0.00064 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 381
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.00035 Score=51.92 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999886
No 382
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0013 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..-|++.|+||+|||+|+.++.+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc
Confidence 456999999999999999999886
No 383
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.95 E-value=0.00057 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++||||||+.+.|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 384
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.95 E-value=0.00068 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+.|+++|+|||||+|....|...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345778999999999999999875
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.95 E-value=0.00052 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 386
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.95 E-value=0.00047 Score=52.10 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998874
No 387
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.94 E-value=0.00054 Score=48.41 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|++.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 388
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.94 E-value=0.00052 Score=47.80 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 389
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.93 E-value=0.0027 Score=47.40 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 390
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.93 E-value=0.00052 Score=50.36 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.|+++|++|||||||...|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999998754
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.92 E-value=0.00044 Score=50.58 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999875
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.92 E-value=0.00042 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|++.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998753
No 393
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.91 E-value=0.00064 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
..-.++++|+.||||||+++.|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344789999999999999999885
No 394
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.91 E-value=0.00041 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
No 395
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.91 E-value=0.0023 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||+|++++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999875
No 396
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.89 E-value=0.00046 Score=55.84 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.++++|++|||||||++.|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999875
No 397
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.89 E-value=0.00067 Score=48.97 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....|++.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34457999999999999999998764
No 398
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.89 E-value=0.00053 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|++|||||||++.+.+-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346899999999999999999985
No 399
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.89 E-value=0.00032 Score=53.90 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+.+-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 46899999999999999999986
No 400
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.88 E-value=0.00068 Score=46.13 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 401
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.88 E-value=0.00064 Score=47.57 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.87 E-value=0.00061 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|+++|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.85 E-value=0.00086 Score=48.44 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
No 404
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.85 E-value=0.003 Score=45.39 Aligned_cols=41 Identities=10% Similarity=-0.082 Sum_probs=29.3
Q ss_pred eEEEEEeCCCCCCcCcHHHHHHHHhhCCcEEEEEeccCCCC
Q 029158 106 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 146 (198)
Q Consensus 106 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 146 (198)
.-++++|..+-+.....+.+..+...++++|+++-..|-..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 45778898775554445556665556899999999998654
No 405
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.84 E-value=0.00051 Score=50.35 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|+++|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999764
No 406
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.84 E-value=0.00057 Score=48.83 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 407
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.0021 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|++.|++|+|||+|+.++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 356999999999999999999875
No 408
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.84 E-value=0.0007 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+|+++|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 409
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.83 E-value=0.006 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...-|++.|+||+|||+|++++++.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999987
No 410
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.79 E-value=0.00083 Score=46.74 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 029158 23 EIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~ 43 (198)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 411
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.00074 Score=47.15 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.79 E-value=0.00032 Score=54.09 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999986
No 413
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.78 E-value=0.00064 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||||++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999999875
No 414
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.78 E-value=0.001 Score=45.87 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||+|+..+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998865
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.78 E-value=0.00089 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 416
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.77 E-value=0.00085 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....|++.|++||||||+.+.|...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988663
No 417
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.77 E-value=0.00066 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029158 24 IAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 24 v~~vG~~~~GKSsli~~l~~~ 44 (198)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999875
No 418
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.77 E-value=0.00075 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 029158 23 EIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~ 43 (198)
..+++|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999864
No 419
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.76 E-value=0.0008 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|.+||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 420
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.75 E-value=0.001 Score=45.40 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|++.|.+||||||+.+.|...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998753
No 421
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.75 E-value=0.00032 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.|+++|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 422
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.74 E-value=0.00095 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.|++.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.74 E-value=0.001 Score=48.13 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
....|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.00063 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-.+++++|+.|||||||++.|++-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3467999999999999999999875
No 425
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.74 E-value=0.001 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
..-.++++|+.||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 344789999999999999999885
No 426
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.74 E-value=0.00069 Score=51.75 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999875
No 427
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.73 E-value=0.0011 Score=49.45 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~ 42 (198)
....|+++|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999987
No 428
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.72 E-value=0.00086 Score=49.14 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|++||||||+.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999763
No 429
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.69 E-value=0.0011 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+.|+++|++|||||||...|...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998864
No 430
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.68 E-value=0.00095 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
-.++++|++|+|||||+..+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999884
No 431
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.68 E-value=0.0074 Score=43.97 Aligned_cols=64 Identities=8% Similarity=0.062 Sum_probs=36.8
Q ss_pred CCceEEEeCCCCccccchhHHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCcCcHHHHHHHHhhC---------CcEE
Q 029158 66 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ---------TKYQ 136 (198)
Q Consensus 66 ~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~---------~p~i 136 (198)
.+++.++|||+.... .....+. .+|.++++++.+.........+++.+...+ ..+-
T Consensus 113 ~yD~viiD~p~~~~~------------~~~~~l~---~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 177 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET------------GALMALY---FADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH 177 (260)
T ss_dssp TCSEEEEECCSSSSH------------HHHHHHH---TCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEE
T ss_pred CCCEEEEcCCCCCCH------------HHHHHHH---hCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceE
Confidence 567899999874221 1111222 389999998886321112233444444322 4678
Q ss_pred EEEeccCC
Q 029158 137 VVLTKTDT 144 (198)
Q Consensus 137 iv~nK~Dl 144 (198)
+|+|+.|.
T Consensus 178 ~v~N~~~~ 185 (260)
T 3q9l_A 178 LLLTRYNP 185 (260)
T ss_dssp EEEEEECH
T ss_pred EEEecCCc
Confidence 99999984
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.65 E-value=0.0014 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
+.|++.|++||||||+.+.|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 433
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.62 E-value=0.0014 Score=47.11 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....+++.|++|+|||+|+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998764
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.61 E-value=0.0013 Score=49.27 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 435
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.60 E-value=0.0013 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|+++|.+||||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 436
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.59 E-value=0.0014 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+++.|++|+|||+|+.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998875
No 437
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.58 E-value=0.0014 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.|+++|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47999999999999999988764
No 438
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.58 E-value=0.012 Score=46.81 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.+++.|++|+|||||++.+.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999875
No 439
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.58 E-value=0.00098 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|+|||||+..+++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999999998864
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.58 E-value=0.0011 Score=54.45 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+++-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 47999999999999999999986
No 441
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.58 E-value=0.0012 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998764
No 442
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.57 E-value=0.0013 Score=46.17 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+...|+++|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998753
No 443
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.57 E-value=0.0025 Score=49.09 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|++.|++|+|||+|+.++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999875
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.55 E-value=0.0013 Score=54.15 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-.++++|++|||||||++.+++-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999986
No 445
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.54 E-value=0.0019 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999875
No 446
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.54 E-value=0.0018 Score=48.85 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+.|+++|++|+|||||...|...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3456889999999999999999865
No 447
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.54 E-value=0.0057 Score=47.12 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|++.|++|+|||+|+.++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999875
No 448
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.54 E-value=0.0014 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|||||||++.|.+.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999986
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.53 E-value=0.0012 Score=46.82 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
-.++++|++|+|||||+..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 450
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.53 E-value=0.012 Score=44.50 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-+++.|++|+|||+++.++.+.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 3566677999999999999875
No 451
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.52 E-value=0.0013 Score=52.67 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
-.++++|+.|||||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999885
No 452
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.51 E-value=0.0016 Score=43.68 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 029158 22 PEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~ 42 (198)
...+++|+.|+|||||+.++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999976
No 453
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.51 E-value=0.0016 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...++++|++|+|||||++.+.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999998864
No 454
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.51 E-value=0.0011 Score=54.61 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-.++++|++|||||||++.+.+-
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 347999999999999999999986
No 455
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.51 E-value=0.0059 Score=47.56 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|++.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999765
No 456
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.49 E-value=0.0014 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|+|||||+..++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999873
No 457
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.49 E-value=0.0012 Score=54.57 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQW 45 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~~ 45 (198)
-.++++|++|||||||++.+++-.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 478999999999999999999863
No 458
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.48 E-value=0.0012 Score=54.40 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-.++++|++|||||||++.+++-
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 347999999999999999999986
No 459
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.45 E-value=0.0016 Score=50.44 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 029158 23 EIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~ 42 (198)
..+++|+.|||||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47799999999999999987
No 460
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.44 E-value=0.0014 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|++|||||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999986
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.43 E-value=0.0019 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|+++|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 462
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.43 E-value=0.0015 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-+++++|+.|+|||||++.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999986
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.41 E-value=0.0022 Score=48.11 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....+++.|++|+|||+++..+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999877754
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.0017 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.|.+.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999999986
No 465
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.40 E-value=0.0025 Score=42.44 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|++.|++|+|||+++..+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999765
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0019 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|+|||||++.|.+.
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 346899999999999999999986
No 467
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.38 E-value=0.0014 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=18.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
..+.|++.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998875
No 468
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.37 E-value=0.0026 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.|+++|++|+|||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999876
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0028 Score=45.82 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~ 43 (198)
....|+++|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999998875
No 470
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.35 E-value=0.0026 Score=45.72 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.....-|++.|.+||||||+++.|...
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344567899999999999999998754
No 471
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.35 E-value=0.0023 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-+++.|+||+|||+|+.++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35677799999999999999875
No 472
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.34 E-value=0.0021 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.|++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999986
No 473
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.33 E-value=0.0021 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--.++++|+.|+|||||++.|.+.
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346899999999999999999986
No 474
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0026 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+++.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998764
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.32 E-value=0.0029 Score=48.63 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 18 APDLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 18 ~~~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+...+.|+++|++|+||||+...|.+.
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 334567999999999999999887753
No 476
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.31 E-value=0.0026 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...|++.|++|+|||+|++++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999875
No 477
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.0024 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
+.+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999877
No 478
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.29 E-value=0.002 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
--+++++|++|+|||||++.+.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999986
No 479
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.29 E-value=0.0021 Score=42.71 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..|++.|++|+|||+++..+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999999776
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.26 E-value=0.0025 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|||||||++.|++.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999986
No 481
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.22 E-value=0.0023 Score=45.69 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+++.|++|+|||||+..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 482
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.22 E-value=0.003 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..+++.|++|+|||+++..+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988764
No 483
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.21 E-value=0.0026 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.+++.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998865
No 484
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.21 E-value=0.0017 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.+++.|+||+||||++.++++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998887753
No 485
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.20 E-value=0.0022 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 029158 22 PEIAFAGRSNVGKSSMLNALTR 43 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~ 43 (198)
-.++++|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998885
No 486
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.20 E-value=0.0032 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.|+++|++|+|||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45889999999999999999865
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.20 E-value=0.0024 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+...|++.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999765
No 488
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.19 E-value=0.0029 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
-.++++|+.|+|||||++.|.+.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999986
No 489
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.18 E-value=0.0018 Score=58.20 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.-+|++||++|||||||++.|++-
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 348999999999999999999975
No 490
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.17 E-value=0.0031 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||||+..+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999875
No 491
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.16 E-value=0.019 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...++++|++|+|||+++..+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999998864
No 492
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.0033 Score=48.00 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+.+++.|++|+||||++..+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 44899999999999999998875
No 493
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.13 E-value=0.012 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 029158 22 PEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 22 ~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
..++++|++|+|||+++..+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 494
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0032 Score=51.97 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQW 45 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~~ 45 (198)
.++++|+.|+|||||++.|.+..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999863
No 495
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.11 E-value=0.0036 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHh
Q 029158 19 PDLPEIAFAGRSNVGKSSMLNALT 42 (198)
Q Consensus 19 ~~~~~v~~vG~~~~GKSsli~~l~ 42 (198)
.+..+|+++|.+|||||||+..+.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 346799999999999999998864
No 496
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.09 E-value=0.0033 Score=46.37 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
....+++.|++|+|||+|+.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999875
No 497
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.06 E-value=0.0014 Score=55.54 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...++++|+||+|||+++..+...
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.06 E-value=0.0043 Score=44.75 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 20 ~~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
+..++.++|++||||||+...|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988754
No 499
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.04 E-value=0.00039 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 029158 23 EIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 23 ~v~~vG~~~~GKSsli~~l~~~ 44 (198)
.++++|++|||||||++.+++.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999875
No 500
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.02 E-value=0.0048 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 029158 21 LPEIAFAGRSNVGKSSMLNALTRQ 44 (198)
Q Consensus 21 ~~~v~~vG~~~~GKSsli~~l~~~ 44 (198)
...+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998875
Done!