RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029158
(198 letters)
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 202 bits (516), Expect = 1e-66
Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 1/191 (0%)
Query: 2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
+ F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG TQ IN
Sbjct: 7 QQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 66
Query: 62 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
F++ LVDLPGYG+A EE+K W+ + EY+ R SL+ + +L+D + +K D
Sbjct: 67 LFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD 126
Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
++I S V+LTK D + + + E++ A N V V SS G
Sbjct: 127 QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV-QVETFSSLKKQG 185
Query: 182 IRSLRTVLSKI 192
+ LR L
Sbjct: 186 VDKLRQKLDTW 196
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 200 bits (512), Expect = 3e-66
Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 2/191 (1%)
Query: 2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+N
Sbjct: 4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 62 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
F+ + +L VD+PGYGFA + ++AW +++ Y++TR LK V ++D + D
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123
Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
++ ++ V+ TK D + + A + ++L + +++ SS++ G
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE--DELILFSSETKKG 181
Query: 182 IRSLRTVLSKI 192
+ K+
Sbjct: 182 KDEAWGAIKKM 192
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 197 bits (503), Expect = 6e-65
Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 3/191 (1%)
Query: 2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
+E A+ +P P E+AF GRSNVGKSS+LNAL + + S PG T++IN
Sbjct: 4 RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSIN 62
Query: 62 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
F+ + +K VDLPGYG+A ++ + W+ LV++Y R SL+ V LL+D + + D
Sbjct: 63 FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD 122
Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
++ M+ + +VLTK D V + A++ + + ++ SS +G G
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY--TIIPTSSVTGEG 180
Query: 182 IRSLRTVLSKI 192
I L ++S +
Sbjct: 181 ISELLDLISTL 191
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 194 bits (494), Expect = 4e-63
Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 8/201 (3%)
Query: 2 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 61
++ FF P PEIAFAGRSN GKS+ +N L Q + S PG TQ IN
Sbjct: 10 HQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN 69
Query: 62 FFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 117
+F +G LVDLPGYG+A K WE+L+ Y+ TR L + L++D + +
Sbjct: 70 YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129
Query: 118 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP----VMM 173
D +I + +LTK D + + ++SL A V +
Sbjct: 130 TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQL 189
Query: 174 VSSKSGAGIRSLRTVLSKIAR 194
S+ G+ ++ R
Sbjct: 190 FSALKRTGLDDAHALIESWLR 210
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 137 bits (347), Expect = 2e-41
Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 80
+ I FAGRSNVGKS+++ LT + VR +PG+T+ I + ++D+PG+GF
Sbjct: 1 MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFM 57
Query: 81 YAKE-EVKDAWEELVKEYVSTRV-SLKRVCLLIDTK-----------WGVKPRDHELISL 127
EV++ ++ + ++ ++ L++D K G P D E
Sbjct: 58 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 128 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187
+ V + K D + + + + + + + + + +S+K G I L+
Sbjct: 118 LRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE-IDKVFIPISAKFGDNIERLKN 176
Query: 188 VLSKI 192
+ ++
Sbjct: 177 RIFEV 181
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 93.2 bits (231), Expect = 9e-23
Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 30/190 (15%)
Query: 22 PEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKLG--TKLCLVDLPG 76
+A G + GKSS +N L + +T + +K + DLPG
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129
Query: 77 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ 136
G + Y+ + +I + K D ++ + + ++
Sbjct: 130 IGSTNFPPD----------TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFY 179
Query: 137 VVLTKTDTVFPIDVARRAMQ-------------IEESLKANNSLVQPVMMVSSK--SGAG 181
V TK D+ + + + N P+ ++S+K
Sbjct: 180 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 239
Query: 182 IRSLRTVLSK 191
L L
Sbjct: 240 FPVLMDKLIS 249
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 68.5 bits (168), Expect = 4e-14
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 78
I AGR NVGKSS +NAL Q V SD G T +++ +G + LVD PG
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93
Query: 79 FAYAKEEVKDAWEELVKEYVSTRVSLKRV---CLLIDTKWGVKPRDHELISLMERSQTKY 135
++V + V+ R R L+ D+ P + ++++L + + +
Sbjct: 94 -----DDVGELGRLRVE---KARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPF 143
Query: 136 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
VV+ K D + +A +++ ++ V++VS+ G + +S+I
Sbjct: 144 VVVVNKIDVLGE-----KAEELKGLYESRYEA--KVLLVSALQKKGFDDIGKTISEIL 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 54.0 bits (129), Expect = 4e-09
Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 24 IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 71
+ G S +GKS+++N+L + + ++K T I + +L +
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 72 VDLPGYGFA----YAKEEVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVK 118
VD PGYG A + + +E + Y+ L R C + +G
Sbjct: 81 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 140
Query: 119 PRDHELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNSLV 168
+ + ++ M+ K + V+ K DT+ + R +I + ++ +N +
Sbjct: 141 LKPLD-VAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 191
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 51.5 bits (124), Expect = 2e-08
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 31 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG
Sbjct: 130 NVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 50.7 bits (122), Expect = 4e-08
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 31 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
N GKS+++N L + +PG+T+ I +F L + ++D PG
Sbjct: 109 NTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 50.7 bits (121), Expect = 7e-08
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 24 IAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77
+ G +NVGKS+ +N + V+ TS PG T + L + L D PG
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 49.9 bits (120), Expect = 1e-07
Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 56/192 (29%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 72
+ G+ NVGKS++LN L + D+ PG T + I G +V
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNE-------DRAIVTDIPGTTRDVISEEIVI--RGILFRIV 296
Query: 73 DLPG-----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 121
D G G +E++ A V ++D + D
Sbjct: 297 DTAGVRSETNDLVERLGIERTLQEIEKA---------------DIVLFVLDASSPLDEED 341
Query: 122 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 181
+++ ++ +Y VV+ K D V I+ EE +K + ++ +S+ G G
Sbjct: 342 RKILERIK--NKRYLVVINKVDVVEKIN--------EEEIKNKLGTDRHMVKISALKGEG 391
Query: 182 IRSLRTVLSKIA 193
+ L + +
Sbjct: 392 LEKLEESIYRET 403
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 48.8 bits (117), Expect = 2e-07
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 18/73 (24%)
Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLP 75
IA G N GK+S+ N +T Q W PG+T + K L + DLP
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLP 57
Query: 76 G-YGF-AYAKEEV 86
G Y Y+ E
Sbjct: 58 GIYSMSPYSPEAK 70
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 48.7 bits (115), Expect = 3e-07
Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 28/172 (16%)
Query: 24 IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 71
+ G S +GKS+++N+L + + ++K T I + +L +
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 72 VDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWG-- 116
VD PGYG A + +E + Y+ L R C + +G
Sbjct: 100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 159
Query: 117 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 168
+KP D + + ++ V+ K DT+ + R +I + ++ +N +
Sbjct: 160 LKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 210
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 47.8 bits (114), Expect = 3e-07
Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 22/186 (11%)
Query: 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 75
P I +G NVGKSS +N ++R V T+ + F K ++D P
Sbjct: 27 PHKKTIILSGAPNVGKSSFMNIVSR--ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP 84
Query: 76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLK--RVCLL----IDTKWGVKPRD--HELISL 127
G + A+E ++T +L +L I + G+ ++ + S+
Sbjct: 85 GL--------LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI 136
Query: 128 MERSQTKYQ-VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 186
K + K D ++ + + + N S+ +G G+ +
Sbjct: 137 KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAK 196
Query: 187 TVLSKI 192
++
Sbjct: 197 ITACEL 202
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 47.1 bits (113), Expect = 4e-07
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 74
+ ++ GR NVGKSS+ N L ++ R++ D PG+T+ + + LVD
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVVETDRGRFLLVDT 56
Query: 75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 133
G D WE+ ++E V + V L +D + + D+E+ + R
Sbjct: 57 GGL-------WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK 109
Query: 134 KYQVVLTKTD 143
+V TK D
Sbjct: 110 PVILVATKVD 119
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 48.4 bits (115), Expect = 4e-07
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 79
+ G +NVGKS+ +N + + V+ TS PG T + L + L D PG
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224
Query: 80 AYAKEEVKDAWE 91
+ DA +
Sbjct: 225 HHQMAHFVDARD 236
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 47.5 bits (113), Expect = 6e-07
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 23/157 (14%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 80
+ G+ VGKSS +N+L + VVR S G + ++D PG
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV-- 95
Query: 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ---- 136
V EL+K ++ R LL + V D ++ +
Sbjct: 96 -EAGYVNHQALELIKGFLVNR---TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 137 ----VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 169
+VLT P + + E + +
Sbjct: 152 CKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLL 183
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 47.1 bits (111), Expect = 8e-07
Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 27/172 (15%)
Query: 27 AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 75
G S +GKS+++N+L + +T I + L +VD P
Sbjct: 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 73
Query: 76 GYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVKPRDH 122
G+G A V D + ++Y++ + R CL G +
Sbjct: 74 GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 133
Query: 123 ELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 172
+ I M+R K + ++ K DT+ P + + QI + ++ + +
Sbjct: 134 D-IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP 184
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 47.1 bits (113), Expect = 9e-07
Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 56/191 (29%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 72
+A GR NVGKSS+LNA ++ SD+ PG T + G + ++
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQ-------SDRAIVTDLPGTTRDVVESQLVVG--GIPVQVL 277
Query: 73 DLPG----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 122
D G G +++ A V L ID G D
Sbjct: 278 DTAGIRETSDQVEKIGVERSRQAANTA---------------DLVLLTIDAATGWTTGDQ 322
Query: 123 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182
E+ ++ +V+ K D V + + ++ ++ GI
Sbjct: 323 EIYEQVK--HRPLILVMNKIDLVEKQLITSLEYPENIT---------QIVHTAAAQKQGI 371
Query: 183 RSLRTVLSKIA 193
SL T + +I
Sbjct: 372 DSLETAILEIV 382
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 45.6 bits (109), Expect = 1e-06
Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 50/191 (26%)
Query: 24 IAFAGRSNVGKSSMLNALTRQ-WGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPG- 76
+ AGR N GKSS+LNAL + +V +D G T + I+ G L ++D G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHI--DGMPLHIIDTAGL 62
Query: 77 ---------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 127
G A +E++ A RV ++D E+
Sbjct: 63 REASDEVERIGIERAWQEIEQA---------------DRVLFMVDGTTTDAVDPAEIWPE 107
Query: 128 MER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 184
++ VV K D E+L + ++ +S+++G G+
Sbjct: 108 FIARLPAKLPITVVRNKAD------------ITGETLGMSEVNGHALIRLSARTGEGVDV 155
Query: 185 LRTVLSKIARF 195
LR L + F
Sbjct: 156 LRNHLKQSMGF 166
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 46.4 bits (111), Expect = 2e-06
Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 55/193 (28%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLT-----QTINFFKLGTKLCLV 72
AG+ N GKS++LN L Q ++ PG T + T L
Sbjct: 236 TVIAGKPNAGKSTLLNTLLGQ-------ERAIVSHMPGTTRDYIEECFIH--DKTMFRLT 286
Query: 73 DLPG----------YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 122
D G G ++ ++ +A + L+D +
Sbjct: 287 DTAGLREAGEEIEHEGIRRSRMKMAEA---------------DLILYLLDLGTERLDDEL 331
Query: 123 ELIS--LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 180
I K+ V K D D RA+ V+ +S+ +G
Sbjct: 332 TEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTG--------TEVIGISALNGD 383
Query: 181 GIRSLRTVLSKIA 193
GI +L+ + +
Sbjct: 384 GIDTLKQHMGDLV 396
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 45.8 bits (109), Expect = 2e-06
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 19/74 (25%)
Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
+A G NVGK+++ NALT RQ W PG+T + + + +VDL
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDL 57
Query: 75 PG-YGF-AYAKEEV 86
PG Y A++ +E+
Sbjct: 58 PGIYSLTAHSIDEL 71
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 45.4 bits (108), Expect = 3e-06
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
+A AG NVGK+S+ NALT +Q W PG+T + F G + L+DL
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--------PGVTVEKKEGVFTYKGYTINLIDL 59
Query: 75 PG-YGF-AYAKEEV 86
PG Y + +E
Sbjct: 60 PGTYSLGYSSIDEK 73
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 44.9 bits (107), Expect = 3e-06
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
IA G NVGKS++ NALT W PG+T + F+ G K +VDL
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 61
Query: 75 PG-YGF-AYAKEEV 86
PG Y A + +E+
Sbjct: 62 PGVYSLTANSIDEI 75
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 44.4 bits (106), Expect = 3e-06
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 24 IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKL-GTKLCLVDLPG-Y 77
IA G NVGKS++ NALT + PG+T + F+ G K +VDLPG Y
Sbjct: 6 IALIGNPNVGKSTIFNALTGENV----YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 61
Query: 78 GF-AYAKEEV 86
A + +E+
Sbjct: 62 SLTANSIDEI 71
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 44.6 bits (106), Expect = 6e-06
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 21/86 (24%)
Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
I G N GK+++ N LT RQ W G+T + F ++ LVDL
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNW--------AGVTVERKEGQFSTTDHQVTLVDL 57
Query: 75 PG-YGF-AYAKEEVKDAWEELVKEYV 98
PG Y + + D E++ Y+
Sbjct: 58 PGTYSLTTISSQTSLD--EQIACHYI 81
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 44.0 bits (105), Expect = 1e-05
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 34/184 (18%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-------INFFKLGTKLCLVDLPG 76
+A G+ NVGKS++LN L V S K T + ++ +D PG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKA---GTTRMRVLGVKNIPNEAQIIFLDTPG 68
Query: 77 -----YGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-L 127
E K + EE + + +ID G +PRD E+
Sbjct: 69 IYEPKKSDVLGHSMVEIAKQSLEE---------ADV--ILFMIDATEGWRPRDEEIYQNF 117
Query: 128 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 187
++ VV+ K D + P A+ + + + + + + ++ +S+ GA + L
Sbjct: 118 IKPLNKPVIVVINKIDKIGP---AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVK 174
Query: 188 VLSK 191
+ K
Sbjct: 175 TILK 178
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 43.6 bits (102), Expect = 2e-05
Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 49/198 (24%)
Query: 12 VSSSFPAPDL---PEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDK--------- 53
S + D P + AG+ + GK+S + L Q G T+D
Sbjct: 53 HSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET 112
Query: 54 ----PGLT-----------------QTINFFKLGT-------KLCLVDLPGYGFAYAKEE 85
PG +N F + ++D PG +
Sbjct: 113 EGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRV 172
Query: 86 VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDT 144
+ V + + RV L + LL D K + E I + + K +VVL K D
Sbjct: 173 SRGYDFPAVLRWFAERVDL--IILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM 230
Query: 145 VFPIDVARRAMQIEESLK 162
V + R + +L
Sbjct: 231 VETQQLMRVYGALMWALG 248
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 43.2 bits (103), Expect = 2e-05
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 41/185 (22%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTK------LCLVD 73
IA GR NVGKS++LN L Q + TS K QT I +G VD
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ-KISITSRKA---QTTRHRI----VGIHTEGAYQAIYVD 62
Query: 74 LPGYGFAYAKEE----VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLM 128
PG + K A + V L V +++ T+W P D +++ +
Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSI------GDVEL--VIFVVEGTRWT--PDDEMVLNKL 112
Query: 129 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV--QPVMMVSSKSGAGIRSLR 186
+ + + K D V + L+ S + ++ +S+++G + ++
Sbjct: 113 REGKAPVILAVNKVDNVQEKA------DLLPHLQFLASQMNFLDIVPISAETGLNVDTIA 166
Query: 187 TVLSK 191
++ K
Sbjct: 167 AIVRK 171
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 42.7 bits (101), Expect = 3e-05
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 23/78 (29%)
Query: 24 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 74
G N GK+++ NALT Q W PG+T + F L + + DL
Sbjct: 4 ALLIGNPNCGKTTLFNALTNANQRVGNW--------PGVTVEKKTGEFLLGEHLIEITDL 55
Query: 75 PG------YGFAYAKEEV 86
PG +++E
Sbjct: 56 PGVYSLVANAEGISQDEQ 73
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 42.5 bits (101), Expect = 4e-05
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 17 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 57
++ + GR NVGKSS++NA+ + V+ S+ G T
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTT 210
Score = 42.1 bits (100), Expect = 5e-05
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 74
P +A GR NVGKS++ N + + R S D PG+T+ + L L+D
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGE----RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDT 58
Query: 75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 133
G + + + +++ + V + +++ + GV D E+ ++ R++
Sbjct: 59 GGI------DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112
Query: 134 KYQVVLTKTDT 144
+ + K D
Sbjct: 113 PVVLAVNKLDN 123
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 42.5 bits (101), Expect = 4e-05
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 73
D ++A GR NVGKS++ NA+ + + S PG T+ F G K VD
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVD 234
Score = 41.7 bits (99), Expect = 6e-05
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 74
+ + GR NVGKS++ N L ++ + + D+ G+T+ G LVD
Sbjct: 1 MATVLIVGRPNVGKSTLFNKLVKK----KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 56
Query: 75 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 133
G + +D + +KE + + L ++D K G+ D L + +S
Sbjct: 57 CGV-----FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTV 111
Query: 134 KYQVVLTKTDTV 145
+V K + +
Sbjct: 112 DTILVANKAENL 123
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 41.9 bits (98), Expect = 5e-05
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 20/136 (14%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFA 80
I G+ VGKSS +N++ + VV S ++ + G L ++D PG
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL--- 97
Query: 81 YAKEEVKDAWEELVKEYVSTRVSLKRV-CLLIDTKWGVKPRDHELISLMERSQTKYQ--- 136
++ + + + K + LL + D+ + + +
Sbjct: 98 ----IEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI 153
Query: 137 -----VVLTKTDTVFP 147
V LT P
Sbjct: 154 WNKAIVALTHAQFSPP 169
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 40.9 bits (97), Expect = 1e-04
Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 50/189 (26%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----INFFKLGTK------LCLVD 73
+A G+ NVGKS++LN L V S +P QT + G + VD
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGV-KVAPISPRP---QTTRKRL----RGILTEGRRQIVFVD 61
Query: 74 LPGY-------GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 126
PG G + +EV +A + V+ V ++D + P D +
Sbjct: 62 TPGLHKPMDALG-EFMDQEVYEALAD---------VNA--VVWVVDLRHPPTPEDELVAR 109
Query: 127 LMERSQTKYQVVL--TKTDTVFPIDVARRAMQIEESLKANNSLVQ--PVMMVSSKSGAGI 182
++ K ++L K D EE++KA + L+ M+S+ +
Sbjct: 110 ALKPLVGKVPILLVGNKLDAA---------KYPEEAMKAYHELLPEAEPRMLSALDERQV 160
Query: 183 RSLRTVLSK 191
L+ L
Sbjct: 161 AELKADLLA 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 41.0 bits (96), Expect = 1e-04
Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 23/183 (12%)
Query: 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 75
++P + AG NVGKS++L ALT + P T+ IN F + ++D P
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTT--AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTP 222
Query: 76 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDT----KWGVKPRDHELISLMER 130
G E E+ K+ + L + + + D + ++ + H +
Sbjct: 223 GL-LDRPISERN----EIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277
Query: 131 SQTKYQ-VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 189
+ VV+ K D ++ R +E+ +K + +S+ G GI ++ +
Sbjct: 278 FKDLPFLVVINKIDVADEENIKR----LEKFVKEKG---LNPIKISALKGTGIDLVKEEI 330
Query: 190 SKI 192
K
Sbjct: 331 IKT 333
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 37.4 bits (86), Expect = 0.002
Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 29/165 (17%)
Query: 27 AGRSNVGKSSMLNAL--TRQWGVVRTSDKPGLTQTINFFKLG-----TKLCLVDLPGYGF 79
G + +GKS++++ L T+ G T +PG+ N + L KL +V G+G
Sbjct: 48 VGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107
Query: 80 AYAKEEVKDAWEELVK-------EYVSTRVSLKRVC-LLIDTK-----WGVKPRDHEL-- 124
KE D+++ +V+ Y+ + ++RV D++ + + P H L
Sbjct: 108 QINKE---DSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKS 164
Query: 125 --ISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANN 165
+ M++ +K + ++ K D + ++ + ++I L +N
Sbjct: 165 LDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNG 209
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 37.4 bits (87), Expect = 0.002
Identities = 19/88 (21%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 107 VCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 166
+++D K G K + E + +++ VV+TK+D ++ R M ++ L++ ++
Sbjct: 100 ALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHN 159
Query: 167 LVQ-PVMMVSSKSGAGIRSLRTVLSKIA 193
L ++ +S+K+G G+ L+ ++
Sbjct: 160 LKNSSIIPISAKTGFGVDELKNLIITTL 187
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 36.5 bits (84), Expect = 0.003
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 24 IAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGF 79
I G++ GKS+ N++ R+ T+ K +T+ T+L +VD PG
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSGTAAKS-ITKKCEKRSSSWKETELVVVDTPGIFD 90
Query: 80 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 112
+ +E+++ + T + L++
Sbjct: 91 TEVPNA--ETSKEIIRCILLTSPGPHALLLVVP 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.004
Identities = 17/178 (9%), Positives = 43/178 (24%), Gaps = 45/178 (25%)
Query: 33 GKSSMLNALTRQ------------WGVVRTSDKPG--LTQTINFF-KLGTKLCLVDLPGY 77
GK+ + + W ++ + P L ++
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI-DTKWGVKPRDHELISLME-RSQTKY 135
++ L+K CLL+ + + + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYEN------CLLVLLNVQ-----NAKAWNAFNLSCKI-- 268
Query: 136 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 193
++ T R Q+ + L A + + ++++L K
Sbjct: 269 -LLTT------------RFKQVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYL 311
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 35.7 bits (83), Expect = 0.007
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 25 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 77
FAG+S VGKSS+LNAL + T S+ GL T + ++D PG
Sbjct: 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGV 278
Query: 78 -GFAY---AKEEVKDAWEELVK 95
F E++ + E
Sbjct: 279 REFGLWHLEPEQITQGFVEFHD 300
Score = 31.1 bits (71), Expect = 0.18
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS-KIARF 195
+VL K D + + + E + ++ V+MVSS + G++ L L+ +I+ F
Sbjct: 165 IVLNKIDLLDDEGMD----FVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIF 220
Query: 196 A 196
A
Sbjct: 221 A 221
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.010
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 30/142 (21%)
Query: 75 PGYGF-AYAKEEV-KDAWEELVKEYVSTR--VSL--------KRVCLLIDTKWGVKPRDH 122
G G Y + +D W + S+ + + + G + R++
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 123 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI-----EESLKA-NNSLVQPVMMVSS 176
+++ + ++ KT+ +F ++ + + L A + QP + +
Sbjct: 1688 -YSAMIFETIVDGKL---KTEKIFK-EINEHSTSYTFRSEKGLLSATQFT--QPALTLME 1740
Query: 177 KSGAGIRSLR--TVLSKIARFA 196
K A L+ ++ A FA
Sbjct: 1741 K--AAFEDLKSKGLIPADATFA 1760
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 34.9 bits (81), Expect = 0.012
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 20 DLPEIAFAGRSNVGKSSMLNALTR 43
++P I G +N GK+S+ N+LT
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLTG 201
Score = 28.8 bits (65), Expect = 1.2
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 194
V L K D + D+ ++ +E+ K S + V+ +S+ + LR + ++A
Sbjct: 297 VTLNKIDKING-DLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLAT 353
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.4 bits (80), Expect = 0.014
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 25 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 77
AG S VGKSS+LNA+ +R S+K T T K +VD PG+
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231
Query: 78 -GFAY---AKEEVKDAWEELVKE 96
EE+K ++E +
Sbjct: 232 ANLEINDIEPEELKHYFKEFGDK 254
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 34.1 bits (79), Expect = 0.018
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 25 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 77
AG S VGKSS+L+ LT + +RT S+K T + G + D PG+
Sbjct: 169 ILAGPSGVGKSSILSRLTGE--ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226
Query: 78 -GFAYA----KEEVKDAWEELVK 95
EV++ + E ++
Sbjct: 227 SKVEATMFVKPREVRNYFREFLR 249
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 33.7 bits (78), Expect = 0.026
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 25 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKL-GTKLCLVDLPG 76
FAG+S VGKSS+LNA++ + G +RT S+ G T+ + G + D PG
Sbjct: 177 VFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGGL--VADTPG 233
Query: 77 Y-GFAY---AKEEVKDAWEELVK 95
+ + +EE+ + ++ +
Sbjct: 234 FSSLEFTDIEEEELGYTFPDIRE 256
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 33.5 bits (76), Expect = 0.031
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 8/127 (6%)
Query: 24 IAFAGRSNVGKSSMLNA-LTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFA 80
+ GR+ GKS+ N+ L ++ R + + +VD P +
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83
Query: 81 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME---RSQTKYQV 137
+ EE Y+ + + L+ + + + K+ V
Sbjct: 84 QVSKT-DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMV 142
Query: 138 VL-TKTD 143
++ T+ +
Sbjct: 143 IVFTRKE 149
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 31.2 bits (70), Expect = 0.12
Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 20/143 (13%)
Query: 18 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 77
+ + G + GK++++ + G ++ V G+
Sbjct: 1 SNAMNVWQVVGYKHSGKTTLMEKWVAA-----------------AVREGWRVGTVKHHGH 43
Query: 78 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQV 137
G A+ E D+ V+T V + L R ++++L + +
Sbjct: 44 GGEPARPEGVDSVRHERAGAVATAVEGDGLLQLH--LRRPLWRLDDVLALYAPLRLDLVL 101
Query: 138 VLTKTDTVFP-IDVARRAMQIEE 159
V P + + R
Sbjct: 102 VEGYKQERHPKVVLVRSEEDWAS 124
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 0.13
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 20 DLPEIAFAGRSNVGKSSMLNAL 41
+ + G GKS+ LNAL
Sbjct: 68 GVFRLLVLGDMKRGKSTFLNAL 89
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.7 bits (71), Expect = 0.14
Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 41/173 (23%)
Query: 27 AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 75
G S +GKS+++N+L + +T I + L +VD P
Sbjct: 37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 96
Query: 76 GYGFAYAKEEVKDAWEELVK-------EYVSTRVSLKR---------VCLLIDTKWGVKP 119
G+G A + W+ ++ +Y++ + R CL + P
Sbjct: 97 GFGDAVDNS---NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYF-----IAP 148
Query: 120 RDHEL----ISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNS 166
H L I M+R K + ++ K DT+ P + + QI + ++ +
Sbjct: 149 SGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKI 201
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 30.4 bits (68), Expect = 0.29
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 24 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL---GTKLCLVDLPGYGF 79
I G++ GKS+ N++ R+ + LT+T + + ++ ++D P
Sbjct: 25 IILVGKTGTGKSAAGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFS 83
Query: 80 AYAKEE 85
E
Sbjct: 84 WKDHCE 89
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 30.0 bits (67), Expect = 0.36
Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 23/140 (16%)
Query: 22 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 81
++ G S+ GK++++ + + G ++ +V +G
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPI-----------------LRERGLRVAVVKRHAHGDFE 45
Query: 82 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 141
+E KD+W+ S ++ + + + Y +V+T+
Sbjct: 46 IDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEGNDLDWIYERY---LSDYDLVITE 102
Query: 142 TDTVFP---IDVARRAMQIE 158
+ I V ++ ++E
Sbjct: 103 GFSKAGKDRIVVVKKPEEVE 122
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 29.9 bits (67), Expect = 0.40
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 1 MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 60
M+ ++ + + F P I G GKSS+ + + + ++ L T
Sbjct: 1 MHHHHHHSSGRENLYFQG-SKPRILLMGLRRSGKSSIQKVVFHK---MSPNETLFLESTN 56
Query: 61 NF------FKLGTKLCLVDLPG 76
+ D PG
Sbjct: 57 KIYKDDISNSSFVNFQIWDFPG 78
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 30.3 bits (69), Expect = 0.40
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 23 EIAFAGRSNVGKSSMLNALTR 43
EI G+ NVGKS+ +A T
Sbjct: 2 EIGVVGKPNVGKSTFFSAATL 22
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.1 bits (64), Expect = 0.76
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 21 LPEIAFAGRSNVGKSSMLNALTRQW 45
+P +AFA S GK+++L L
Sbjct: 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.1 bits (66), Expect = 0.87
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 127 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
L ER Q +V K D + A +E L + PV +S+ + G+R L
Sbjct: 272 LTERPQI---IVANKMDMP---EAAENLEAFKEKLTDD----YPVFPISAVTREGLREL 320
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.2 bits (65), Expect = 0.88
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 19 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF------FKLGTKLCLV 72
P ++ GRS GKSSM + + D L TI+ F L L
Sbjct: 1 PLGSKLLLMGRSGSGKSSMRSIIFSN---YSAFDTRRLGATIDVEHSHLRFLGNMTLNLW 57
Query: 73 DLPG 76
D G
Sbjct: 58 DCGG 61
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 29.3 bits (65), Expect = 0.91
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 28 GRSNVGKSSMLNALTRQWGVVR------TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 81
G VGKSS+L A + + +++ +T+ +L + + F
Sbjct: 38 GIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKI 97
Query: 82 A-------KEEVKDAWEELVKEYVSTRVSLKRVCLLID 112
+ E K + E+ +E L + D
Sbjct: 98 SLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFD 135
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 29.0 bits (66), Expect = 1.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 31 NVGKSSMLNALTR 43
NVGKS++ NALTR
Sbjct: 11 NVGKSTLFNALTR 23
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A;
dynamin-like protein 1A, GTPase, membrane fission,
motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB:
3t35_A*
Length = 360
Score = 28.7 bits (64), Expect = 1.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 19 PDLPEIAFAGRSNVGKSSMLNALT 42
LP IA G + GKSS+L ++
Sbjct: 32 DSLPAIAVVGGQSSGKSSVLESIV 55
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.4 bits (64), Expect = 1.5
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182
+V+ K D + + M ++ + N V+++S K+ G
Sbjct: 169 IVINKIDLADAVGADIKKM-ENDAKRINPDA--EVVLLSLKTMEGF 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 28.6 bits (65), Expect = 1.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 31 NVGKSSMLNALTR 43
NVGKS+ A+T+
Sbjct: 30 NVGKSTFFRAITK 42
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.0 bits (63), Expect = 1.6
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 137 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 182
+V+ K + M ++ N ++ + K+G G
Sbjct: 159 IVINKVALAEAVGADVEKM-KADAKLINPRA--KIIEMDLKTGKGF 201
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.6
Identities = 7/28 (25%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 152 RRAMQ-IEESLK--ANNSLVQPVMMVSS 176
++A++ ++ SLK A++S P + + +
Sbjct: 19 KQALKKLQASLKLYADDS--APALAIKA 44
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 28.2 bits (64), Expect = 1.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 31 NVGKSSMLNALTR 43
NVGKS+ N LT
Sbjct: 32 NVGKSTFFNVLTN 44
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 28.2 bits (64), Expect = 1.6
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 31 NVGKSSMLNALTR 43
NVGKS++ NALT+
Sbjct: 12 NVGKSTLFNALTK 24
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.3 bits (64), Expect = 1.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 24 IAFAGRSNVGKSSMLNALTR 43
+A GRS GKS++ N TR
Sbjct: 372 VALVGRSGSGKSTIANLFTR 391
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase,
asparaginase, hydrolase; 1.90A {Homo sapiens} PDB:
2a8i_A 2a8m_A 2a8l_A
Length = 420
Score = 28.0 bits (62), Expect = 2.3
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 147 PIDVARRAMQIEESLKANNSLVQPVMMV 174
P+ VA R + + K + + P +V
Sbjct: 139 PVSVANRLLCEGQKGKLSAGRIPPCFLV 166
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 27.8 bits (62), Expect = 2.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 24 IAFAGRSNVGKSSMLNALTR 43
+ GR+ GKS++L+A R
Sbjct: 50 VGLLGRTGSGKSTLLSAFLR 69
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.9 bits (63), Expect = 2.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 24 IAFAGRSNVGKSSMLNALTR 43
+A GRS GKS++ + +TR
Sbjct: 372 VALVGRSGSGKSTIASLITR 391
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 27.4 bits (61), Expect = 3.3
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 137 VVLTKTDTVFPIDVARRAM-QIEESLK----ANNSLVQPVMMVSSKSGAGIRSL 185
+ + K D A A + +L + + PV+ +S G G+ SL
Sbjct: 198 IAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSL 251
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 27.1 bits (61), Expect = 4.5
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 126 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 185
+L+ R V L K D + + ++L V+ VS+ +GAG+ +L
Sbjct: 266 ALLRRPSL---VALNKVDLLE----EEAVKALADALAREG---LAVLPVSALTGAGLPAL 315
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 26.6 bits (59), Expect = 4.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 22 PEIAFAGRSNVGKSSMLNALTR-QWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
P I AG N GK+S+L LT S +P + G+ + LVD PG
Sbjct: 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD----GSGVTLVDFPG 64
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding;
3.50A {Homo sapiens} PDB: 3zys_B
Length = 608
Score = 26.6 bits (58), Expect = 6.0
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 1 MNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR 43
++ ++ A V LP IA G + GKSS+L AL+
Sbjct: 28 IDLIDSLRALGVEQDL---ALPAIAVIGDQSSGKSSVLEALSG 67
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 26.2 bits (58), Expect = 6.3
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 22 PEIAFAGRSNVGKSSMLNALTR-QWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 76
P I AG N GK+S+L LT S +P + G+ + LVD PG
Sbjct: 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD----GSGVTLVDFPG 100
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 26.4 bits (58), Expect = 6.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 20 DLPEIAFAGRSNVGKSSMLNALTRQ 44
DLP + G + GK + AL
Sbjct: 35 DLPHLLLYGPNGTGKKTRCMALLES 59
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.5 bits (57), Expect = 7.6
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 24 IAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQTINFFKLGTK--LCLVDLPG 76
+A G GKS ++N L + G S G+ L L+D G
Sbjct: 41 VAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEG 100
Query: 77 YGFAYAKEEVKDAW 90
G + D+W
Sbjct: 101 LGDVEKGDNQNDSW 114
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 26.2 bits (58), Expect = 9.3
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 26 FAGRSNVGKSSMLNALTR 43
FAG S VGKS +L + R
Sbjct: 163 FAG-SGVGKSVLLGMMAR 179
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa
transferase; 2.20A {Leptospira interrogans} SCOP:
c.69.1.40
Length = 366
Score = 26.0 bits (58), Expect = 9.6
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 120 RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 175
+ EL + + + ++ VV +D ++P ++ +I +SL+A + V V + S
Sbjct: 288 KGKELTAALSNATCRFLVVSYSSDWLYP---PAQSREIVKSLEAADKRVFYVELQS 340
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.374
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,824,335
Number of extensions: 158420
Number of successful extensions: 733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 698
Number of HSP's successfully gapped: 102
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)