Query 029160
Match_columns 198
No_of_seqs 234 out of 1353
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0071 IbpA Molecular chapero 99.9 3.9E-26 8.5E-31 178.5 13.9 100 81-182 38-137 (146)
2 cd06472 ACD_ScHsp26_like Alpha 99.9 1.1E-25 2.3E-30 162.9 12.0 92 85-177 1-92 (92)
3 PRK10743 heat shock protein Ib 99.9 1.6E-25 3.5E-30 173.3 13.1 91 83-179 34-125 (137)
4 PRK11597 heat shock chaperone 99.9 3.3E-25 7.2E-30 172.3 13.4 92 81-178 30-122 (142)
5 cd06471 ACD_LpsHSP_like Group 99.9 5.8E-24 1.3E-28 153.9 12.1 91 84-177 1-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 3.9E-23 8.4E-28 149.1 12.8 89 84-177 1-90 (90)
7 cd06497 ACD_alphaA-crystallin_ 99.9 6.7E-23 1.5E-27 146.9 11.7 82 87-177 4-86 (86)
8 PF00011 HSP20: Hsp20/alpha cr 99.9 1.2E-22 2.6E-27 148.8 12.8 95 87-185 1-95 (102)
9 cd06498 ACD_alphaB-crystallin_ 99.9 2.5E-22 5.5E-27 143.3 11.3 82 88-178 2-84 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 2.7E-22 5.9E-27 142.8 11.5 82 87-177 1-83 (83)
11 cd06482 ACD_HspB10 Alpha cryst 99.9 2.8E-22 6E-27 143.9 10.9 82 90-176 5-86 (87)
12 cd06479 ACD_HspB7_like Alpha c 99.9 2.7E-22 5.8E-27 142.2 9.6 79 87-177 2-81 (81)
13 cd06476 ACD_HspB2_like Alpha c 99.9 1.5E-21 3.2E-26 139.0 11.5 81 88-177 2-83 (83)
14 cd06475 ACD_HspB1_like Alpha c 99.9 2.2E-21 4.8E-26 139.0 11.3 82 86-176 3-85 (86)
15 cd06481 ACD_HspB9_like Alpha c 99.9 3.2E-21 7E-26 138.4 11.0 83 90-177 4-87 (87)
16 cd06464 ACD_sHsps-like Alpha-c 99.8 2.7E-20 5.8E-25 131.7 11.8 88 87-177 1-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 2.4E-20 5.3E-25 132.7 11.3 79 89-176 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 2.9E-20 6.2E-25 132.0 9.8 77 92-177 6-83 (83)
19 cd06480 ACD_HspB8_like Alpha-c 99.8 3.1E-18 6.6E-23 123.8 10.3 82 87-177 9-91 (91)
20 KOG3591 Alpha crystallins [Pos 99.8 6.1E-18 1.3E-22 135.6 12.7 93 83-183 62-154 (173)
21 KOG0710 Molecular chaperone (s 99.7 4.3E-17 9.3E-22 133.3 7.1 103 78-181 79-183 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 9.6E-14 2.1E-18 94.6 10.1 80 88-177 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.9E-11 4.2E-16 85.0 8.4 71 88-180 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.0 2.7E-09 5.8E-14 85.4 9.9 82 80-182 88-172 (177)
25 cd06463 p23_like Proteins cont 99.0 5.6E-09 1.2E-13 72.3 9.2 76 88-180 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 9.7E-08 2.1E-12 66.9 8.5 77 87-180 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 4.9E-06 1.1E-10 56.9 11.8 77 84-177 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.1 4.1E-05 8.9E-10 56.5 10.3 78 84-179 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.0 7E-05 1.5E-09 52.7 8.8 77 87-180 1-77 (84)
30 PF08190 PIH1: pre-RNA process 97.9 7E-05 1.5E-09 65.1 9.0 66 92-176 260-327 (328)
31 cd06468 p23_CacyBP p23_like do 97.8 0.00035 7.7E-09 49.7 10.2 79 85-180 3-85 (92)
32 cd06488 p23_melusin_like p23_l 97.8 0.00039 8.3E-09 49.5 9.8 78 86-180 3-80 (87)
33 cd06467 p23_NUDC_like p23_like 97.8 0.00028 6E-09 49.4 8.8 75 86-180 1-77 (85)
34 cd06494 p23_NUDCD2_like p23-li 97.7 0.00077 1.7E-08 48.8 10.0 79 82-180 4-83 (93)
35 cd06493 p23_NUDCD1_like p23_NU 97.6 0.0009 1.9E-08 47.3 9.3 77 86-181 1-78 (85)
36 cd00237 p23 p23 binds heat sho 97.3 0.0064 1.4E-07 45.0 11.0 78 84-180 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.8 0.0097 2.1E-07 52.8 9.2 81 83-180 156-236 (356)
38 KOG1309 Suppressor of G2 allel 96.6 0.01 2.2E-07 47.9 7.0 81 83-180 3-83 (196)
39 cd06490 p23_NCB5OR p23_like do 96.3 0.083 1.8E-06 37.5 10.1 76 86-180 1-80 (87)
40 cd06495 p23_NUDCD3_like p23-li 96.3 0.14 3.1E-06 37.6 11.3 82 83-180 4-87 (102)
41 cd06492 p23_mNUDC_like p23-lik 96.2 0.07 1.5E-06 37.9 8.9 75 87-180 2-79 (87)
42 PF14913 DPCD: DPCD protein fa 83.1 12 0.00027 30.5 8.7 80 80-179 83-170 (194)
43 PF13349 DUF4097: Domain of un 81.8 21 0.00045 27.2 9.6 84 82-174 64-147 (166)
44 KOG3158 HSP90 co-chaperone p23 80.5 7.2 0.00016 31.4 6.4 82 81-181 5-86 (180)
45 KOG2265 Nuclear distribution p 79.9 14 0.0003 29.9 7.9 81 80-180 15-97 (179)
46 cd06477 ACD_HspB3_Like Alpha c 79.6 4.2 9E-05 28.6 4.4 30 94-124 51-82 (83)
47 cd06482 ACD_HspB10 Alpha cryst 75.1 5.5 0.00012 28.3 4.0 35 145-181 9-43 (87)
48 cd06471 ACD_LpsHSP_like Group 74.2 6 0.00013 27.8 4.0 31 92-123 61-91 (93)
49 cd06470 ACD_IbpA-B_like Alpha- 70.0 9.4 0.0002 26.8 4.2 35 145-181 12-46 (90)
50 KOG1667 Zn2+-binding protein M 69.4 25 0.00054 30.3 7.2 85 82-182 213-297 (320)
51 cd06497 ACD_alphaA-crystallin_ 68.4 11 0.00024 26.4 4.3 32 145-178 11-42 (86)
52 cd06472 ACD_ScHsp26_like Alpha 67.8 10 0.00022 26.6 4.0 31 92-123 59-90 (92)
53 cd06464 ACD_sHsps-like Alpha-c 67.1 12 0.00026 25.2 4.2 33 91-124 54-87 (88)
54 cd06478 ACD_HspB4-5-6 Alpha-cr 66.9 12 0.00027 25.9 4.2 32 145-178 8-39 (83)
55 cd06476 ACD_HspB2_like Alpha c 66.4 11 0.00024 26.3 4.0 33 145-179 8-40 (83)
56 COG5091 SGT1 Suppressor of G2 66.3 4.6 0.0001 35.1 2.3 84 82-181 175-258 (368)
57 cd06479 ACD_HspB7_like Alpha c 66.1 12 0.00027 26.1 4.1 33 145-179 9-41 (81)
58 PF00011 HSP20: Hsp20/alpha cr 65.7 14 0.0003 26.1 4.5 37 92-129 54-91 (102)
59 PF12992 DUF3876: Domain of un 65.4 26 0.00056 25.4 5.8 40 82-122 24-68 (95)
60 PRK10743 heat shock protein Ib 64.3 14 0.0003 28.4 4.5 32 146-179 47-78 (137)
61 PF08308 PEGA: PEGA domain; I 63.9 30 0.00065 22.8 5.6 42 85-126 26-68 (71)
62 cd06526 metazoan_ACD Alpha-cry 60.9 15 0.00032 25.3 3.7 34 145-180 8-41 (83)
63 cd06480 ACD_HspB8_like Alpha-c 60.2 20 0.00043 25.7 4.3 31 93-124 58-90 (91)
64 cd06475 ACD_HspB1_like Alpha c 60.1 20 0.00044 25.1 4.4 33 145-179 11-43 (86)
65 cd06498 ACD_alphaB-crystallin_ 56.8 22 0.00048 24.8 4.1 32 145-178 8-39 (84)
66 cd06481 ACD_HspB9_like Alpha c 56.7 27 0.00058 24.5 4.5 34 145-180 8-41 (87)
67 PF04972 BON: BON domain; Int 55.2 25 0.00054 22.6 3.9 25 102-127 12-36 (64)
68 PRK11597 heat shock chaperone 53.0 27 0.00058 27.1 4.3 31 146-178 45-75 (142)
69 KOG3260 Calcyclin-binding prot 50.8 62 0.0013 26.5 6.1 79 86-180 77-155 (224)
70 cd06469 p23_DYX1C1_like p23_li 49.5 50 0.0011 21.8 4.9 33 93-126 36-69 (78)
71 PRK05518 rpl6p 50S ribosomal p 49.4 84 0.0018 25.4 6.8 45 106-176 13-57 (180)
72 COG0071 IbpA Molecular chapero 49.4 41 0.0009 25.7 4.9 32 146-179 52-83 (146)
73 TIGR03653 arch_L6P archaeal ri 44.2 1.2E+02 0.0027 24.1 7.0 45 106-176 7-51 (170)
74 TIGR03654 L6_bact ribosomal pr 42.7 1.2E+02 0.0025 24.3 6.7 44 106-176 11-54 (175)
75 KOG3591 Alpha crystallins [Pos 42.4 33 0.00072 27.5 3.5 31 98-129 120-152 (173)
76 cd06467 p23_NUDC_like p23_like 41.7 53 0.0011 22.1 4.1 31 145-176 9-39 (85)
77 KOG3413 Mitochondrial matrix p 41.5 15 0.00033 28.8 1.3 24 152-176 65-88 (156)
78 PTZ00027 60S ribosomal protein 40.8 1.4E+02 0.0029 24.3 6.9 47 106-176 13-59 (190)
79 cd08023 GH16_laminarinase_like 40.8 1.3E+02 0.0029 24.4 7.0 50 103-155 34-91 (235)
80 PRK05498 rplF 50S ribosomal pr 37.8 1.4E+02 0.0029 23.9 6.4 44 106-176 12-55 (178)
81 PF14730 DUF4468: Domain of un 36.5 1.5E+02 0.0032 20.7 5.9 16 160-176 69-84 (91)
82 PF05455 GvpH: GvpH; InterPro 35.8 1.6E+02 0.0035 23.8 6.4 38 92-130 135-172 (177)
83 cd06494 p23_NUDCD2_like p23-li 33.3 76 0.0017 22.6 3.9 30 145-175 16-45 (93)
84 cd02177 GH16_kappa_carrageenas 32.5 2E+02 0.0044 24.6 7.0 44 110-154 45-103 (269)
85 CHL00140 rpl6 ribosomal protei 32.2 1.6E+02 0.0034 23.6 5.9 44 106-176 12-55 (178)
86 PF07873 YabP: YabP family; I 31.2 38 0.00083 22.4 1.9 23 104-127 23-45 (66)
87 PRK11198 LysM domain/BON super 30.7 70 0.0015 24.7 3.5 26 102-128 38-63 (147)
88 PF01954 DUF104: Protein of un 30.6 44 0.00096 22.0 2.0 14 159-173 3-16 (60)
89 cd02175 GH16_lichenase lichena 30.5 1.4E+02 0.0031 24.0 5.5 47 106-155 31-80 (212)
90 PTZ00179 60S ribosomal protein 28.1 2.2E+02 0.0048 23.1 6.1 47 106-176 12-58 (189)
91 TIGR02856 spore_yqfC sporulati 26.8 49 0.0011 23.3 1.9 43 82-126 18-62 (85)
92 cd02178 GH16_beta_agarase Beta 26.3 3E+02 0.0064 23.0 6.9 44 111-155 60-110 (258)
93 TIGR03421 FeS_CyaY iron donor 25.1 53 0.0012 24.0 1.8 17 160-177 26-42 (102)
94 cd00503 Frataxin Frataxin is a 24.6 83 0.0018 23.0 2.8 18 159-177 28-45 (105)
95 COG4004 Uncharacterized protei 24.5 1.8E+02 0.0039 21.0 4.4 34 86-124 26-59 (96)
96 cd02182 GH16_Strep_laminarinas 24.0 2.8E+02 0.006 23.2 6.3 40 107-154 46-98 (259)
97 TIGR02892 spore_yabP sporulati 23.9 62 0.0013 22.9 1.9 24 101-125 19-42 (85)
98 cd02179 GH16_beta_GRP beta-1,3 23.9 5E+02 0.011 22.8 8.1 16 111-127 41-56 (321)
99 PRK00446 cyaY frataxin-like pr 23.9 85 0.0018 23.0 2.7 17 161-178 29-45 (105)
100 PF01491 Frataxin_Cyay: Fratax 23.2 1.1E+02 0.0023 22.5 3.2 19 159-178 30-48 (109)
101 PF00347 Ribosomal_L6: Ribosom 23.0 2E+02 0.0043 18.9 4.4 18 106-124 2-19 (77)
102 cd08024 GH16_CCF Coelomic cyto 22.7 4.8E+02 0.01 22.9 7.7 14 142-155 113-126 (330)
103 PF13620 CarboxypepD_reg: Carb 22.1 1.1E+02 0.0023 20.2 2.8 38 84-121 38-77 (82)
104 PF08845 SymE_toxin: Toxin Sym 20.6 1.6E+02 0.0034 19.2 3.2 23 99-122 33-56 (57)
No 1
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-26 Score=178.45 Aligned_cols=100 Identities=30% Similarity=0.485 Sum_probs=93.6
Q ss_pred cCCcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCC
Q 029160 81 TGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRK 160 (198)
Q Consensus 81 ~~~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~ 160 (198)
...|++||++++++|+|+++||||+++||+|.++++ .|+|+|+++.+...+...+++.++.+|.|+|+|.||..|+++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 468999999999999999999999999999999999 8999999987656667789999999999999999999999999
Q ss_pred eEEEEcCCCEEEEEEccCCCCC
Q 029160 161 TEAYLSNDVFLEIRIPKNPSTC 182 (198)
Q Consensus 161 i~A~~~~GgvL~I~lPK~~~~~ 182 (198)
++|+|+|| ||+|+|||.+++.
T Consensus 117 ~~A~~~nG-vL~I~lpk~~~~~ 137 (146)
T COG0071 117 IKAKYKNG-LLTVTLPKAEPEE 137 (146)
T ss_pred eeeEeeCc-EEEEEEecccccc
Confidence 99999999 9999999998764
No 2
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.93 E-value=1.1e-25 Score=162.92 Aligned_cols=92 Identities=41% Similarity=0.764 Sum_probs=84.5
Q ss_pred ceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEE
Q 029160 85 SVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAY 164 (198)
Q Consensus 85 ~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~ 164 (198)
++||.|++++|+|.++|||++++||+|++.+++.|+|+|++..+.......++..|+.+|+|.|+|.||.+||.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 37999999999999999999999999999965489999998765555566799999999999999999999999999999
Q ss_pred EcCCCEEEEEEcc
Q 029160 165 LSNDVFLEIRIPK 177 (198)
Q Consensus 165 ~~~GgvL~I~lPK 177 (198)
|+|| ||+|++||
T Consensus 81 ~~nG-vL~I~lPK 92 (92)
T cd06472 81 LENG-VLTVTVPK 92 (92)
T ss_pred EECC-EEEEEecC
Confidence 9999 99999998
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.93 E-value=1.6e-25 Score=173.31 Aligned_cols=91 Identities=15% Similarity=0.331 Sum_probs=82.6
Q ss_pred CcceeEEE-cCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCe
Q 029160 83 QSSVDWLQ-TDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (198)
Q Consensus 83 ~p~~dv~e-~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 161 (198)
.|++||.+ ++++|+|.++|||++++||+|++.+| .|+|+|+++.+. ++..|++.||.+|+|+|+|.||++||.++
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~- 109 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVRG- 109 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccCc-
Confidence 38899995 89999999999999999999999999 899999976543 34578999999999999999999999995
Q ss_pred EEEEcCCCEEEEEEccCC
Q 029160 162 EAYLSNDVFLEIRIPKNP 179 (198)
Q Consensus 162 ~A~~~~GgvL~I~lPK~~ 179 (198)
|+|+|| ||+|+|||..
T Consensus 110 -A~~~dG-VL~I~lPK~~ 125 (137)
T PRK10743 110 -ANLVNG-LLYIDLERVI 125 (137)
T ss_pred -CEEeCC-EEEEEEeCCC
Confidence 999999 9999999963
No 4
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.93 E-value=3.3e-25 Score=172.33 Aligned_cols=92 Identities=16% Similarity=0.303 Sum_probs=83.1
Q ss_pred cCCcceeEEE-cCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCC
Q 029160 81 TGQSSVDWLQ-TDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWR 159 (198)
Q Consensus 81 ~~~p~~dv~e-~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~ 159 (198)
...|++||.| ++++|+|+++|||++++||+|.+++| .|+|+|+++.+ +++..|++.||.+|+|+|+|.||++||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~ 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC
Confidence 3458999998 57899999999999999999999998 89999997643 34557999999999999999999999998
Q ss_pred CeEEEEcCCCEEEEEEccC
Q 029160 160 KTEAYLSNDVFLEIRIPKN 178 (198)
Q Consensus 160 ~i~A~~~~GgvL~I~lPK~ 178 (198)
+|+|+|| ||+|+|||.
T Consensus 107 --~A~~~nG-VL~I~lPK~ 122 (142)
T PRK11597 107 --GATFVNG-LLHIDLIRN 122 (142)
T ss_pred --cCEEcCC-EEEEEEecc
Confidence 6999999 999999996
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.91 E-value=5.8e-24 Score=153.86 Aligned_cols=91 Identities=27% Similarity=0.520 Sum_probs=82.3
Q ss_pred cceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCC--CCCceEEeeEEceEEEEEEECCCCCCCCCe
Q 029160 84 SSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDP--RAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (198)
Q Consensus 84 p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 161 (198)
+++||.|++++|+|.++|||+++++|+|.+.++ .|+|+|+++...++ .+..|.+.|+.+|+|.|+|.|| ++|.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 358999999999999999999999999999998 89999999764332 2346899999999999999999 7999999
Q ss_pred EEEEcCCCEEEEEEcc
Q 029160 162 EAYLSNDVFLEIRIPK 177 (198)
Q Consensus 162 ~A~~~~GgvL~I~lPK 177 (198)
+|+|+|| +|+|++||
T Consensus 79 ~A~~~dG-vL~I~lPK 93 (93)
T cd06471 79 KAKYENG-VLKITLPK 93 (93)
T ss_pred EEEEECC-EEEEEEcC
Confidence 9999999 99999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.90 E-value=3.9e-23 Score=149.13 Aligned_cols=89 Identities=17% Similarity=0.378 Sum_probs=81.0
Q ss_pred cceeEEEcC-ceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeE
Q 029160 84 SSVDWLQTD-QAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (198)
Q Consensus 84 p~~dv~e~~-~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 162 (198)
|++||.+++ ++|+|.++|||+++++|+|.+.++ .|+|+|+++.... .+..|..+|+.+|+|.|+|.||.+||.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 678999975 999999999999999999999998 8999999987654 4557888999999999999999999985 8
Q ss_pred EEEcCCCEEEEEEcc
Q 029160 163 AYLSNDVFLEIRIPK 177 (198)
Q Consensus 163 A~~~~GgvL~I~lPK 177 (198)
|+|+|| +|+|+||+
T Consensus 77 A~~~~G-vL~I~l~~ 90 (90)
T cd06470 77 AELENG-LLTIDLER 90 (90)
T ss_pred eEEeCC-EEEEEEEC
Confidence 999999 99999985
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=6.7e-23 Score=146.88 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=73.0
Q ss_pred eEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEE-
Q 029160 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL- 165 (198)
Q Consensus 87 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~- 165 (198)
+|.+++++|.|.++||||+++||+|++.++ .|+|+|++....+ +..|.++ +|+|+|.||++||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~~~~-----ef~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQD--DHGYISR-----EFHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeC--CCCEEEE-----EEEEEEECCCCCChHHeEEEeC
Confidence 799999999999999999999999999999 8999999754432 2355554 599999999999999999999
Q ss_pred cCCCEEEEEEcc
Q 029160 166 SNDVFLEIRIPK 177 (198)
Q Consensus 166 ~~GgvL~I~lPK 177 (198)
+|| ||+|++||
T Consensus 76 ~dG-vL~I~~PK 86 (86)
T cd06497 76 ADG-MLTFSGPK 86 (86)
T ss_pred CCC-EEEEEecC
Confidence 799 99999998
No 8
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.89 E-value=1.2e-22 Score=148.81 Aligned_cols=95 Identities=31% Similarity=0.510 Sum_probs=78.5
Q ss_pred eEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEc
Q 029160 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (198)
Q Consensus 87 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 166 (198)
||.+++++|.|.++||||++++|+|++.++ .|+|+|++.. ...+..+...++.++.|.|+|.||.++|.++|+|+|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~~--~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRKE--EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEEG--EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceeee--eeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 799999999999999999999999999999 7999999982 2333467778888999999999999999999999999
Q ss_pred CCCEEEEEEccCCCCCCCC
Q 029160 167 NDVFLEIRIPKNPSTCDIS 185 (198)
Q Consensus 167 ~GgvL~I~lPK~~~~~~~~ 185 (198)
|| +|+|++||.....+..
T Consensus 78 ~G-vL~I~~pk~~~~~~~~ 95 (102)
T PF00011_consen 78 NG-VLTITIPKKEEEEDSQ 95 (102)
T ss_dssp TS-EEEEEEEBSSSCTTSS
T ss_pred CC-EEEEEEEccccccCCC
Confidence 99 9999999998876533
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.88 E-value=2.5e-22 Score=143.30 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=71.9
Q ss_pred EEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEc-
Q 029160 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS- 166 (198)
Q Consensus 88 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~- 166 (198)
+.+++++|.|.++||||+++||+|++.++ .|+|+|++..+.+ ...|+++ +|+|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQD--EHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeC--CCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 67889999999999999999999999998 8999998765432 2345543 6999999999999999999996
Q ss_pred CCCEEEEEEccC
Q 029160 167 NDVFLEIRIPKN 178 (198)
Q Consensus 167 ~GgvL~I~lPK~ 178 (198)
|| ||+|++||+
T Consensus 74 dG-vL~I~lPk~ 84 (84)
T cd06498 74 DG-VLTVCGPRK 84 (84)
T ss_pred CC-EEEEEEeCC
Confidence 99 999999995
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.88 E-value=2.7e-22 Score=142.77 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=71.8
Q ss_pred eEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEE-
Q 029160 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL- 165 (198)
Q Consensus 87 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~- 165 (198)
+|.+++++|.|.++||||+++||+|++.++ .|+|+|++....+ +..|.++ +|+|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~--~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQD--EHGFISR-----EFHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEcC--CCCEEEE-----EEEEEEECCCCcChHHeEEEEC
Confidence 378899999999999999999999999998 8999999765432 2345554 599999999999999999999
Q ss_pred cCCCEEEEEEcc
Q 029160 166 SNDVFLEIRIPK 177 (198)
Q Consensus 166 ~~GgvL~I~lPK 177 (198)
+|| ||+|++||
T Consensus 73 ~dG-vL~I~~PK 83 (83)
T cd06478 73 ADG-VLTISGPR 83 (83)
T ss_pred CCC-EEEEEecC
Confidence 699 99999998
No 11
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.88 E-value=2.8e-22 Score=143.88 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=72.6
Q ss_pred EcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCCC
Q 029160 90 QTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDV 169 (198)
Q Consensus 90 e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~Gg 169 (198)
.++++|+|.++||||+++||+|++.+| .|+|+|+++...+... ..+|.+|+|.|+|.||.+||.++|+|+|+|||
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~ 79 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGS 79 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCC
Confidence 467899999999999999999999999 8999999876543221 23778899999999999999999999999999
Q ss_pred EEEEEEc
Q 029160 170 FLEIRIP 176 (198)
Q Consensus 170 vL~I~lP 176 (198)
+|+|..|
T Consensus 80 ~l~i~~~ 86 (87)
T cd06482 80 VVKIETP 86 (87)
T ss_pred EEEEeeC
Confidence 9999887
No 12
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=2.7e-22 Score=142.18 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=71.2
Q ss_pred eEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEE-
Q 029160 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL- 165 (198)
Q Consensus 87 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~- 165 (198)
||.|++++|.|.++||||+|+||+|++.++ .|+|+|+++.+. . ..+|+|+|+|.||.+||+++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~--~--------~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASD--G--------TVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccC--C--------CEEEEEEEEEECCCCcCHHHeEEEec
Confidence 689999999999999999999999999999 899999976432 1 1367999999999999999999997
Q ss_pred cCCCEEEEEEcc
Q 029160 166 SNDVFLEIRIPK 177 (198)
Q Consensus 166 ~~GgvL~I~lPK 177 (198)
+|| +|+|++++
T Consensus 71 ~~G-vL~I~~~~ 81 (81)
T cd06479 71 EDG-TLTIKARR 81 (81)
T ss_pred CCC-EEEEEecC
Confidence 899 99999986
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=1.5e-21 Score=139.01 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=69.8
Q ss_pred EEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEc-
Q 029160 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS- 166 (198)
Q Consensus 88 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~- 166 (198)
+..++++|.|.++||||+++||+|++.++ .|+|+|+++...+ ...+..+ +|+|+|.||.+||+++|+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~~~~-----eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRMD--RHGFVSR-----EFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcceec--CCCEEEE-----EEEEEEECCCCCChhhEEEEecC
Confidence 45578999999999999999999999999 8999999865332 2234443 6999999999999999999996
Q ss_pred CCCEEEEEEcc
Q 029160 167 NDVFLEIRIPK 177 (198)
Q Consensus 167 ~GgvL~I~lPK 177 (198)
|| +|+|++||
T Consensus 74 dG-vL~I~~Pr 83 (83)
T cd06476 74 DG-ILCIQAPR 83 (83)
T ss_pred CC-EEEEEecC
Confidence 88 99999997
No 14
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=2.2e-21 Score=139.01 Aligned_cols=82 Identities=23% Similarity=0.443 Sum_probs=71.9
Q ss_pred eeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEE
Q 029160 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL 165 (198)
Q Consensus 86 ~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~ 165 (198)
.||+|++++|.|.++||||++++|+|++.++ .|+|+|++..... ...+. .++|+|+|.||.+||.++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 5899999999999999999999999999998 8999999865322 22332 23799999999999999999999
Q ss_pred c-CCCEEEEEEc
Q 029160 166 S-NDVFLEIRIP 176 (198)
Q Consensus 166 ~-~GgvL~I~lP 176 (198)
. || +|+|++|
T Consensus 75 ~~dG-vL~I~lP 85 (86)
T cd06475 75 SPDG-ILTVEAP 85 (86)
T ss_pred CCCC-eEEEEec
Confidence 7 98 9999998
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.86 E-value=3.2e-21 Score=138.44 Aligned_cols=83 Identities=22% Similarity=0.436 Sum_probs=71.8
Q ss_pred EcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEE-cCC
Q 029160 90 QTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL-SND 168 (198)
Q Consensus 90 e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~-~~G 168 (198)
+.+++|+|.++||||+++||+|++.++ .|+|+|++....+.....|. +.+|+|+|+|.||++||.++|+|+| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 457899999999999999999999998 89999998765443333443 3468999999999999999999999 899
Q ss_pred CEEEEEEcc
Q 029160 169 VFLEIRIPK 177 (198)
Q Consensus 169 gvL~I~lPK 177 (198)
||+|++|+
T Consensus 80 -vL~I~~P~ 87 (87)
T cd06481 80 -HLHIRAPR 87 (87)
T ss_pred -eEEEEcCC
Confidence 99999995
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=2.7e-20 Score=131.65 Aligned_cols=88 Identities=39% Similarity=0.636 Sum_probs=80.2
Q ss_pred eEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEc
Q 029160 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (198)
Q Consensus 87 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 166 (198)
++.+++++|.|.++|||+++++|+|++.++ .|.|+|++........ .+...++.++.|.|+|.||.++|.+.++|.|.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 478899999999999999999999999998 8999999887544333 67888889999999999999999999999999
Q ss_pred CCCEEEEEEcc
Q 029160 167 NDVFLEIRIPK 177 (198)
Q Consensus 167 ~GgvL~I~lPK 177 (198)
|| +|+|++||
T Consensus 79 ~G-~L~I~~pk 88 (88)
T cd06464 79 NG-VLTITLPK 88 (88)
T ss_pred CC-EEEEEEcC
Confidence 98 99999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.84 E-value=2.4e-20 Score=132.72 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=68.3
Q ss_pred EEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEE-cC
Q 029160 89 LQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL-SN 167 (198)
Q Consensus 89 ~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~-~~ 167 (198)
.+++++|+|.++||||+++||+|++.++ .|+|+|++..+.++ ..+.. ++|+|+|.||.+||.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~~--~~~~~-----r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDE--HGFIS-----RSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccCC--CCEEE-----EEEEEEEECCCCcchheEEEEEcCC
Confidence 4678999999999999999999999999 89999998764322 23432 2899999999999999999998 78
Q ss_pred CCEEEEEEc
Q 029160 168 DVFLEIRIP 176 (198)
Q Consensus 168 GgvL~I~lP 176 (198)
| ||+|+.|
T Consensus 75 G-vL~I~~~ 82 (83)
T cd06477 75 G-ILVVETK 82 (83)
T ss_pred C-EEEEEec
Confidence 8 9999986
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.83 E-value=2.9e-20 Score=132.05 Aligned_cols=77 Identities=26% Similarity=0.497 Sum_probs=67.4
Q ss_pred CceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcC-CCE
Q 029160 92 DQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN-DVF 170 (198)
Q Consensus 92 ~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~-Ggv 170 (198)
.++|.|.++||||+++||+|++.++ .|+|+|+++.... ... +.+++|.|+|.||.+||+++++|+|.| | +
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~--~~~-----~~~~~f~r~~~LP~~vd~~~i~A~~~~~G-v 76 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEERED--EHG-----YVSREFTRRYQLPEGVDPDSVTSSLSSDG-V 76 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeecc--CCC-----EEEEEEEEEEECCCCCChHHeEEEeCCCc-E
Confidence 3699999999999999999999998 8999999876533 112 334689999999999999999999999 6 9
Q ss_pred EEEEEcc
Q 029160 171 LEIRIPK 177 (198)
Q Consensus 171 L~I~lPK 177 (198)
|+|++||
T Consensus 77 L~I~~Pk 83 (83)
T cd06526 77 LTIEAPK 83 (83)
T ss_pred EEEEecC
Confidence 9999998
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.77 E-value=3.1e-18 Score=123.80 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=70.9
Q ss_pred eEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEc
Q 029160 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (198)
Q Consensus 87 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 166 (198)
-+.+++++|.|.+|+.||+++||+|++.++ .|+|+|+++....+ ..+.. ++|.|+|.||++||.+.|+|.|.
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~e--~g~~~-----r~F~R~~~LP~~Vd~~~v~s~l~ 80 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQKE--GGIVS-----KNFTKKIQLPPEVDPVTVFASLS 80 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccCC--CCEEE-----EEEEEEEECCCCCCchhEEEEeC
Confidence 356788999999999999999999999998 79999998865433 23433 47999999999999999999999
Q ss_pred -CCCEEEEEEcc
Q 029160 167 -NDVFLEIRIPK 177 (198)
Q Consensus 167 -~GgvL~I~lPK 177 (198)
|| +|+|.+|.
T Consensus 81 ~dG-vL~IeaP~ 91 (91)
T cd06480 81 PEG-LLIIEAPQ 91 (91)
T ss_pred CCC-eEEEEcCC
Confidence 77 99999983
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.1e-18 Score=135.62 Aligned_cols=93 Identities=25% Similarity=0.453 Sum_probs=81.9
Q ss_pred CcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeE
Q 029160 83 QSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (198)
Q Consensus 83 ~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 162 (198)
....++..++++|.|.+|+..|+|++|+|++.|+ .|.|+|++.+..++ .++..+ +|.|+|.||++||++.|+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d~--~G~v~R-----~F~R~y~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKEDE--HGYVSR-----SFVRKYLLPEDVDPTSVT 133 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCCC-EEEEEeeeccccCC--CCeEEE-----EEEEEecCCCCCChhheE
Confidence 4567899999999999999999999999999999 89999998876533 345554 699999999999999999
Q ss_pred EEEcCCCEEEEEEccCCCCCC
Q 029160 163 AYLSNDVFLEIRIPKNPSTCD 183 (198)
Q Consensus 163 A~~~~GgvL~I~lPK~~~~~~ 183 (198)
++|+..|+|+|++||.+....
T Consensus 134 S~LS~dGvLtI~ap~~~~~~~ 154 (173)
T KOG3591|consen 134 STLSSDGVLTIEAPKPPPKQD 154 (173)
T ss_pred EeeCCCceEEEEccCCCCcCc
Confidence 999987799999999987654
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.3e-17 Score=133.33 Aligned_cols=103 Identities=30% Similarity=0.490 Sum_probs=93.3
Q ss_pred ccccCCcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCC--CCCceEEeeEEceEEEEEEECCCC
Q 029160 78 LQSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDP--RAKDWRSGHWWEHGFVRRLELPED 155 (198)
Q Consensus 78 ~~~~~~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~er~~g~F~r~~~LP~~ 155 (198)
..+.+.+..+|.++++.|++.++|||+.+++|+|.+.++++|+|+|+++.+.++ ....|+..|+.+|.|.|+|.||++
T Consensus 79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPen 158 (196)
T KOG0710|consen 79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPEN 158 (196)
T ss_pred ccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcc
Confidence 345677888999999999999999999999999999988789999999876553 456788999999999999999999
Q ss_pred CCCCCeEEEEcCCCEEEEEEccCCCC
Q 029160 156 ADWRKTEAYLSNDVFLEIRIPKNPST 181 (198)
Q Consensus 156 vd~~~i~A~~~~GgvL~I~lPK~~~~ 181 (198)
++.+.|+|.|.|| ||+|++||....
T Consensus 159 v~~d~ikA~~~nG-VL~VvvpK~~~~ 183 (196)
T KOG0710|consen 159 VDVDEIKAEMENG-VLTVVVPKLEPL 183 (196)
T ss_pred ccHHHHHHHhhCC-eEEEEEeccccc
Confidence 9999999999999 999999999874
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.53 E-value=9.6e-14 Score=94.56 Aligned_cols=80 Identities=43% Similarity=0.696 Sum_probs=69.6
Q ss_pred EEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcC
Q 029160 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN 167 (198)
Q Consensus 88 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~ 167 (198)
|.++++.|.|.+++||+.+++|.|.+.++ .|.|+|++..... .+...+.|.+.+.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 46788999999999999999999999998 7999999765322 22234579999999999999999999999
Q ss_pred CCEEEEEEcc
Q 029160 168 DVFLEIRIPK 177 (198)
Q Consensus 168 GgvL~I~lPK 177 (198)
| +|+|++||
T Consensus 72 ~-~l~i~l~K 80 (80)
T cd00298 72 G-VLEITLPK 80 (80)
T ss_pred C-EEEEEEcC
Confidence 8 99999998
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.29 E-value=1.9e-11 Score=84.97 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=64.4
Q ss_pred EEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcC
Q 029160 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN 167 (198)
Q Consensus 88 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~ 167 (198)
|.++++.+.|++++||+++++|+|.+.++ .|.|++. .|.+.+.||..||++..+|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence 46789999999999999999999999988 7988771 37888999999999999999999
Q ss_pred CCEEEEEEccCCC
Q 029160 168 DVFLEIRIPKNPS 180 (198)
Q Consensus 168 GgvL~I~lPK~~~ 180 (198)
| .|.|+|+|.++
T Consensus 60 ~-~l~i~L~K~~~ 71 (78)
T cd06469 60 G-VLVFTLVKKEP 71 (78)
T ss_pred C-EEEEEEEeCCC
Confidence 9 99999999865
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.01 E-value=2.7e-09 Score=85.36 Aligned_cols=82 Identities=28% Similarity=0.450 Sum_probs=65.2
Q ss_pred ccCCcceeEEEcCc-eEEEEEecCCCCccc-eEEEEECC-eEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCC
Q 029160 80 STGQSSVDWLQTDQ-AYVLKAELPGVGKNQ-VQVSVENG-KIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDA 156 (198)
Q Consensus 80 ~~~~p~~dv~e~~~-~y~i~~dlPG~~~ed-I~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~v 156 (198)
....+.+++.+.++ +.+|.++|||+++++ |+|.+..+ ..|+|+.. + .+.+++.||..
T Consensus 88 ~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~------~-------------~~~krv~L~~~- 147 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG------E-------------KYLKRVALPWP- 147 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC------C-------------ceEeeEecCCC-
Confidence 34567899999877 699999999999888 99999944 14555322 1 36678999976
Q ss_pred CCCCeEEEEcCCCEEEEEEccCCCCC
Q 029160 157 DWRKTEAYLSNDVFLEIRIPKNPSTC 182 (198)
Q Consensus 157 d~~~i~A~~~~GgvL~I~lPK~~~~~ 182 (198)
+++.++++|.|| ||+|+|-+.+++.
T Consensus 148 ~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 148 DPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred ccceeeEEEeCc-eEEEEEeecCCCC
Confidence 789999999999 9999999987654
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.97 E-value=5.6e-09 Score=72.32 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=66.2
Q ss_pred EEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcC
Q 029160 88 WLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSN 167 (198)
Q Consensus 88 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~ 167 (198)
+.++++.+.|.+.+||..++++.|.+.++ .|.|++.... .+.|...+.|+..|+++..++++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeC
Confidence 35788999999999999999999999998 7999987430 0147778899999999999999999
Q ss_pred CCEEEEEEccCCC
Q 029160 168 DVFLEIRIPKNPS 180 (198)
Q Consensus 168 GgvL~I~lPK~~~ 180 (198)
| .|.|+|+|+..
T Consensus 65 ~-~l~i~L~K~~~ 76 (84)
T cd06463 65 R-KIEITLKKKEP 76 (84)
T ss_pred C-EEEEEEEECCC
Confidence 9 99999999876
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.72 E-value=9.7e-08 Score=66.91 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=66.6
Q ss_pred eEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEc
Q 029160 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (198)
Q Consensus 87 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 166 (198)
|++++++...|.+.+||+.++++.|.+.++ .|.|++... .. +.|...+.|...|+++..++++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~---~~------------~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILP---GG------------SEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECC---CC------------CeEEEecccccccCchhcEEEEe
Confidence 578899999999999999999999999988 799987732 00 14777889999999999999999
Q ss_pred CCCEEEEEEccCCC
Q 029160 167 NDVFLEIRIPKNPS 180 (198)
Q Consensus 167 ~GgvL~I~lPK~~~ 180 (198)
+| .|.|+|.|...
T Consensus 65 ~~-~vei~L~K~~~ 77 (84)
T cd06466 65 PT-KVEITLKKAEP 77 (84)
T ss_pred Ce-EEEEEEEcCCC
Confidence 99 99999999865
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.49 E-value=4.9e-06 Score=56.92 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=63.6
Q ss_pred cceeEEEcCceEEEEEecCCC--CccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCe
Q 029160 84 SSVDWLQTDQAYVLKAELPGV--GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (198)
Q Consensus 84 p~~dv~e~~~~y~i~~dlPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 161 (198)
|.++|.++++...|.+.+++. ++++|.|.+.+. .|.|+...... . .|.-...|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~~---~------------~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGDG---K------------EYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETTS---C------------EEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccCC---c------------eEEEEEEEeeeEcchhc
Confidence 568999999999999999665 599999999998 79998653221 1 46667889999999999
Q ss_pred EEEEcCCCEEEEEEcc
Q 029160 162 EAYLSNDVFLEIRIPK 177 (198)
Q Consensus 162 ~A~~~~GgvL~I~lPK 177 (198)
+.++.++ .|.|+|.|
T Consensus 65 ~~~~~~~-~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDN-KIEITLKK 79 (79)
T ss_dssp EEEEETT-EEEEEEEB
T ss_pred EEEEECC-EEEEEEEC
Confidence 9999999 99999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.13 E-value=4.1e-05 Score=56.54 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=65.8
Q ss_pred cceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEE
Q 029160 84 SSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEA 163 (198)
Q Consensus 84 p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 163 (198)
|+++++++.+...|++.+||+ +++.|.+... .|.|++.... ++. .|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~-~l~v~~~~~~----~~~----------~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPT-SLSFKAKGGG----GGK----------KYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECC-EEEEEEEcCC----CCe----------eEEEEeEhhhhccccccEE
Confidence 568999999999999999998 8899999988 6999885311 111 3556678999999999999
Q ss_pred EEcCCCEEEEEEccCC
Q 029160 164 YLSNDVFLEIRIPKNP 179 (198)
Q Consensus 164 ~~~~GgvL~I~lPK~~ 179 (198)
++.++ .|.|+|.|..
T Consensus 64 ~v~~~-kveI~L~K~~ 78 (108)
T cd06465 64 KVTGR-QIEFVLRKKE 78 (108)
T ss_pred EecCC-eEEEEEEECC
Confidence 99998 9999999987
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.99 E-value=7e-05 Score=52.68 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=63.8
Q ss_pred eEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEc
Q 029160 87 DWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLS 166 (198)
Q Consensus 87 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 166 (198)
|++++++...|++.++|+.++++.|.+.++ .|.+++.... . . .|.-.+.|...|++++.+.+..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~~~---~--~----------~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKLPS---G--N----------DYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEECCC---C--C----------cEEEeeecCceecchhcEEEEe
Confidence 578899999999999999999999999998 7999886411 1 1 2445678999999998888888
Q ss_pred CCCEEEEEEccCCC
Q 029160 167 NDVFLEIRIPKNPS 180 (198)
Q Consensus 167 ~GgvL~I~lPK~~~ 180 (198)
.+ -+.|.|.|.+.
T Consensus 65 ~~-kiei~L~K~~~ 77 (84)
T cd06489 65 ST-KIEIKLKKTEA 77 (84)
T ss_pred Cc-EEEEEEEcCCC
Confidence 88 89999999753
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.89 E-value=7e-05 Score=65.08 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=57.1
Q ss_pred CceEEEEEecCCC-CccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCC-C
Q 029160 92 DQAYVLKAELPGV-GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSND-V 169 (198)
Q Consensus 92 ~~~y~i~~dlPG~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~G-g 169 (198)
.+.++|+++|||+ +..+|+|.|.+. .|.|..... .|.-.+.||..||.+..+|.|... +
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED-RLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC-EEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 5889999999999 899999999998 688876522 256679999999999999999764 6
Q ss_pred EEEEEEc
Q 029160 170 FLEIRIP 176 (198)
Q Consensus 170 vL~I~lP 176 (198)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 31
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.82 E-value=0.00035 Score=49.75 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=64.2
Q ss_pred ceeEEEcCceEEEEEecCCCCc---cceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEE-CCCCCCCCC
Q 029160 85 SVDWLQTDQAYVLKAELPGVGK---NQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLE-LPEDADWRK 160 (198)
Q Consensus 85 ~~dv~e~~~~y~i~~dlPG~~~---edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~-LP~~vd~~~ 160 (198)
.+++.++++...|.+.+|+..+ ++++|.+..+ .|.|++... ++. .|.-.+. |-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~~-----~~~----------~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHDL-----NGK----------NYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEECC-----CCc----------EEEEEehHhhCccCccc
Confidence 4789999999999999999987 9999999988 799987521 111 2333453 889999999
Q ss_pred eEEEEcCCCEEEEEEccCCC
Q 029160 161 TEAYLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 161 i~A~~~~GgvL~I~lPK~~~ 180 (198)
.+.++.++ -+.|+|.|.++
T Consensus 67 s~~~~~~~-ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTD-RIVITLAKKKE 85 (92)
T ss_pred cEEEEeCC-EEEEEEEeCCC
Confidence 99999888 99999999875
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.78 E-value=0.00039 Score=49.47 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=65.3
Q ss_pred eeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEE
Q 029160 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL 165 (198)
Q Consensus 86 ~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~ 165 (198)
+|++++++...|++.+.|+.++++.|.+.++ .|.|+..... . . .|.-.+.|-..|+++..+.+.
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~~---~--~----------~y~~~l~L~~~I~~~~s~~~v 66 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFEG---N--K----------EFQLDIELWGVIDVEKSSVNM 66 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECCC---C--c----------eEEEEeeccceEChhHcEEEe
Confidence 6899999999999999999999999999987 6888765321 1 0 366678899999999988888
Q ss_pred cCCCEEEEEEccCCC
Q 029160 166 SNDVFLEIRIPKNPS 180 (198)
Q Consensus 166 ~~GgvL~I~lPK~~~ 180 (198)
..+ -+.|+|.|.+.
T Consensus 67 ~~~-kvei~L~K~~~ 80 (87)
T cd06488 67 LPT-KVEIKLRKAEP 80 (87)
T ss_pred cCc-EEEEEEEeCCC
Confidence 777 99999999864
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.77 E-value=0.00028 Score=49.40 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=61.0
Q ss_pred eeEEEcCceEEEEEecC-CCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEE
Q 029160 86 VDWLQTDQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAY 164 (198)
Q Consensus 86 ~dv~e~~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~ 164 (198)
+.+.++++...|.+.+| ++.+++|.|.+.++ .|.|+.+. + .+ -+ .-.|...||++....+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~~-----~---~~--------~l--~~~L~~~I~~~~s~w~ 61 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVKG-----G---EP--------LL--DGELYAKVKVDESTWT 61 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEECC-----C---Cc--------eE--cCcccCceeEcCCEEE
Confidence 36889999999999997 78999999999988 69888641 0 11 12 2358899999998889
Q ss_pred EcC-CCEEEEEEccCCC
Q 029160 165 LSN-DVFLEIRIPKNPS 180 (198)
Q Consensus 165 ~~~-GgvL~I~lPK~~~ 180 (198)
+.+ . .|.|+|+|.++
T Consensus 62 ~~~~~-~v~i~L~K~~~ 77 (85)
T cd06467 62 LEDGK-LLEITLEKRNE 77 (85)
T ss_pred EeCCC-EEEEEEEECCC
Confidence 999 7 99999999875
No 34
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.67 E-value=0.00077 Score=48.82 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=63.0
Q ss_pred CCcceeEEEcCceEEEEEecC-CCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCC
Q 029160 82 GQSSVDWLQTDQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRK 160 (198)
Q Consensus 82 ~~p~~dv~e~~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~ 160 (198)
..+.+.+.+|.+...|++.|| |.+++||.|.+..+ .|.|.-+-. .+ +.. .|...|+++.
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g~--------~~---------l~G--~L~~~I~~de 63 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKGQ--------EV---------LKG--KLFDSVVADE 63 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECCE--------EE---------EcC--cccCccCccc
Confidence 346789999999999999988 89999999999988 688874210 01 111 5788999999
Q ss_pred eEEEEcCCCEEEEEEccCCC
Q 029160 161 TEAYLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 161 i~A~~~~GgvL~I~lPK~~~ 180 (198)
-.-++.+|.+|.|.|.|...
T Consensus 64 stWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 64 CTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred CEEEEECCcEEEEEEEeCCC
Confidence 99999998568999999753
No 35
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.59 E-value=0.0009 Score=47.27 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=60.0
Q ss_pred eeEEEcCceEEEEEecC-CCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEE
Q 029160 86 VDWLQTDQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAY 164 (198)
Q Consensus 86 ~dv~e~~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~ 164 (198)
+++.++.+...|.+.+| |+.++||+|++..+ .|.|... . +. .+ -.-.|...|+++.-+-+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~--~---~~------------~~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALK--D---QA------------PL-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeC--C---CC------------eE-EeCcccCcccccCcEEE
Confidence 46889999999999996 99999999999988 6888642 0 00 11 12368899999998877
Q ss_pred EcCCCEEEEEEccCCCC
Q 029160 165 LSNDVFLEIRIPKNPST 181 (198)
Q Consensus 165 ~~~GgvL~I~lPK~~~~ 181 (198)
+.+|..|.|+|.|+++.
T Consensus 62 i~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 62 IKENKSLEVSLIKKDEG 78 (85)
T ss_pred EeCCCEEEEEEEECCCC
Confidence 77764699999998653
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.29 E-value=0.0064 Score=45.02 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=60.6
Q ss_pred cceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEE
Q 029160 84 SSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEA 163 (198)
Q Consensus 84 p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 163 (198)
|.+++.++.+...|++.+|+ .++++|++.++ .|.++|... ++ . .|.-.+.|-..|+++..+-
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~-~l~f~~~~~---~g--~----------~y~~~l~l~~~I~pe~Sk~ 63 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKS-KLTFSCLNG---DN--V----------KIYNEIELYDRVDPNDSKH 63 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecC-EEEEEEECC---CC--c----------EEEEEEEeecccCcccCeE
Confidence 67899999999999999999 58999999988 799998521 11 1 2333567888899998666
Q ss_pred EEcCCCEEEEEEccCCC
Q 029160 164 YLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 164 ~~~~GgvL~I~lPK~~~ 180 (198)
+...- -+.|.|.|++.
T Consensus 64 ~v~~r-~ve~~L~K~~~ 79 (106)
T cd00237 64 KRTDR-SILCCLRKGKE 79 (106)
T ss_pred EeCCc-eEEEEEEeCCC
Confidence 66555 78899999864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.76 E-value=0.0097 Score=52.79 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=67.7
Q ss_pred CcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeE
Q 029160 83 QSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (198)
Q Consensus 83 ~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 162 (198)
.+.+||+++++...|+|-+.|+.++++.|.+.++ .|.|+..... . . .|.-.+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~~~---~--~----------~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEVPG---E--D----------AYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEecCC---C--c----------ceeecccccccccccccE
Confidence 4678999999999999999999999999999988 7888865321 1 1 244457899999999998
Q ss_pred EEEcCCCEEEEEEccCCC
Q 029160 163 AYLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 163 A~~~~GgvL~I~lPK~~~ 180 (198)
.+.... -+.|+|.|.+.
T Consensus 220 ~~v~~~-Kiei~l~K~~~ 236 (356)
T PLN03088 220 YEVLST-KIEIRLAKAEP 236 (356)
T ss_pred EEEecc-eEEEEEecCCC
Confidence 898888 99999999864
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.56 E-value=0.01 Score=47.94 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=63.8
Q ss_pred CcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeE
Q 029160 83 QSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTE 162 (198)
Q Consensus 83 ~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 162 (198)
.+.+|+++++...+|++-.+|+.++|+.|.+.++ +|.|..+.... + .|.-...|-..|.+++..
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~~~g--~-------------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQLPSG--S-------------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEecCCc--h-------------hhhhhHHhccccccccee
Confidence 3568999999999999999999999999999987 68776653311 1 244445577889999887
Q ss_pred EEEcCCCEEEEEEccCCC
Q 029160 163 AYLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 163 A~~~~GgvL~I~lPK~~~ 180 (198)
-+.-.- -+.|+|+|.+.
T Consensus 67 ~k~~st-KVEI~L~K~~~ 83 (196)
T KOG1309|consen 67 FKVFST-KVEITLAKAEI 83 (196)
T ss_pred eEeeee-eEEEEeccccc
Confidence 777777 88999999654
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.34 E-value=0.083 Score=37.48 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=55.0
Q ss_pred eeEEEcCceEEEEEecCCC--CccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEE
Q 029160 86 VDWLQTDQAYVLKAELPGV--GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEA 163 (198)
Q Consensus 86 ~dv~e~~~~y~i~~dlPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 163 (198)
+||+++++..+|.+-..+. .+.++.+....+ .|.|+-... +. .|...+.|-..|+++. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~~----~~------------~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIILG----DK------------SYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEECC----Cc------------eEEEeeeccccCCCCc-EE
Confidence 4899999999999998864 444555555555 688865422 11 3666778989998875 55
Q ss_pred EEc--CCCEEEEEEccCCC
Q 029160 164 YLS--NDVFLEIRIPKNPS 180 (198)
Q Consensus 164 ~~~--~GgvL~I~lPK~~~ 180 (198)
++. -| -+.|+|.|.+.
T Consensus 63 ~~~~~~~-KVEI~L~K~e~ 80 (87)
T cd06490 63 RISTETG-KIELVLKKKEP 80 (87)
T ss_pred EEcccCc-eEEEEEEcCCC
Confidence 555 66 99999999864
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.27 E-value=0.14 Score=37.58 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=61.1
Q ss_pred CcceeEEEcCceEEEEEecC-CC-CccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCC
Q 029160 83 QSSVDWLQTDQAYVLKAELP-GV-GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRK 160 (198)
Q Consensus 83 ~p~~dv~e~~~~y~i~~dlP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~ 160 (198)
...|.+.+|-+...|++.|| |. +.++|.|.+... .|.|.-+... ....+..+ .|...|+++.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~~----~~~~~i~G-----------~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDGG----GEKVLMEG-----------EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecCC----CCceEEeC-----------cccCcccCcc
Confidence 35688999999999999999 54 588999999988 6877654100 00011111 4788999999
Q ss_pred eEEEEcCCCEEEEEEccCCC
Q 029160 161 TEAYLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 161 i~A~~~~GgvL~I~lPK~~~ 180 (198)
-.-++++|-.|.|+|-|...
T Consensus 68 s~Wtled~~~l~I~L~K~~~ 87 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCSE 87 (102)
T ss_pred ceEEEeCCCEEEEEEEECCC
Confidence 88999997468999999853
No 41
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.15 E-value=0.07 Score=37.93 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=56.9
Q ss_pred eEEEcCceEEEEEecC-C--CCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEE
Q 029160 87 DWLQTDQAYVLKAELP-G--VGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEA 163 (198)
Q Consensus 87 dv~e~~~~y~i~~dlP-G--~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 163 (198)
.+.++.++..|++.|| | +++.+|+|++... .|.|.-+... .+ +. =.|...|+++.-.-
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g~~-------~~---------i~--G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKGQP-------PI---------ID--GELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECCCc-------eE---------Ee--CcccCcccccccEE
Confidence 4677888899999996 3 8899999999988 6887543110 11 11 14778899999888
Q ss_pred EEcCCCEEEEEEccCCC
Q 029160 164 YLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 164 ~~~~GgvL~I~lPK~~~ 180 (198)
.+++|..|.|+|-|...
T Consensus 63 tled~~~l~i~L~K~~~ 79 (87)
T cd06492 63 LIEDGKVVTVNLEKINK 79 (87)
T ss_pred EEeCCCEEEEEEEECCC
Confidence 99987689999999853
No 42
>PF14913 DPCD: DPCD protein family
Probab=83.07 E-value=12 Score=30.54 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=59.4
Q ss_pred ccCCcceeEEEcCceEEEEE-ecCCCCccceEEEEEC-CeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCC--
Q 029160 80 STGQSSVDWLQTDQAYVLKA-ELPGVGKNQVQVSVEN-GKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPED-- 155 (198)
Q Consensus 80 ~~~~p~~dv~e~~~~y~i~~-dlPG~~~edI~V~v~~-~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~-- 155 (198)
+..+|.+-=.+|...|+-.+ .||. .++--+|.+++ .+.++|+-..+ .|.++|.+|+-
T Consensus 83 Ss~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtNK------------------KYyKk~~IPDl~R 143 (194)
T PF14913_consen 83 SSSNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTNK------------------KYYKKFSIPDLDR 143 (194)
T ss_pred cCCCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcCc------------------cceeEecCCcHHh
Confidence 45677777778899999998 6764 56777888873 33688875522 36667888862
Q ss_pred ----CCCCCeEEEEcCCCEEEEEEccCC
Q 029160 156 ----ADWRKTEAYLSNDVFLEIRIPKNP 179 (198)
Q Consensus 156 ----vd~~~i~A~~~~GgvL~I~lPK~~ 179 (198)
.+.+.++..+.|. .|.|+..|..
T Consensus 144 ~~l~l~~~~ls~~h~nN-TLIIsYkKP~ 170 (194)
T PF14913_consen 144 CGLPLEQSALSFAHQNN-TLIISYKKPK 170 (194)
T ss_pred hCCCcchhhceeeeecC-eEEEEecCcH
Confidence 4678899999999 9999998864
No 43
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=81.77 E-value=21 Score=27.24 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=51.1
Q ss_pred CCcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCe
Q 029160 82 GQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (198)
Q Consensus 82 ~~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 161 (198)
....+.|...++ ..+++.. ..+.++++..++ .|.|+.+.....- ...+..... ...-.-.+.||+++..+++
T Consensus 64 ~~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~-~L~I~~~~~~~~~--~~~~~~~~~-~~~~~i~I~lP~~~~l~~i 135 (166)
T PF13349_consen 64 DNGDVEIKPSDD-DKIKVEY---NGKKPEISVEGG-TLTIKSKDRESFF--FKGFNFNNS-DNKSKITIYLPKDYKLDKI 135 (166)
T ss_pred CceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCC-EEEEEEecccccc--cceEEEccc-CCCcEEEEEECCCCceeEE
Confidence 345577777543 4444444 222688999988 8999887221100 011211111 2245567999999988999
Q ss_pred EEEEcCCCEEEEE
Q 029160 162 EAYLSNDVFLEIR 174 (198)
Q Consensus 162 ~A~~~~GgvL~I~ 174 (198)
+....+| -++|.
T Consensus 136 ~i~~~~G-~i~i~ 147 (166)
T PF13349_consen 136 DIKTSSG-DITIE 147 (166)
T ss_pred EEEeccc-cEEEE
Confidence 9999999 66654
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=80.52 E-value=7.2 Score=31.44 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=58.4
Q ss_pred cCCcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCC
Q 029160 81 TGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRK 160 (198)
Q Consensus 81 ~~~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~ 160 (198)
...|.+-|.+..+-+.+++.|+-. .+..|.+... .|+++|+.... .+ .+...|.|=..||+++
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~~-~l~fs~k~~~d------~~--------~~~~~ief~~eIdpe~ 67 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEPS-KLTFSCKSGAD------NH--------KYENEIEFFDEIDPEK 67 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccC--ccceeecccc-EEEEEeccCCC------ce--------eeEEeeehhhhcCHhh
Confidence 345778899999999999999865 4666777777 79999985421 11 3556688889999999
Q ss_pred eEEEEcCCCEEEEEEccCCCC
Q 029160 161 TEAYLSNDVFLEIRIPKNPST 181 (198)
Q Consensus 161 i~A~~~~GgvL~I~lPK~~~~ 181 (198)
.+-+-. + -+...++++.+.
T Consensus 68 sk~k~~-~-r~if~i~~K~e~ 86 (180)
T KOG3158|consen 68 SKHKRT-S-RSIFCILRKKEL 86 (180)
T ss_pred cccccc-c-eEEEEEEEcccc
Confidence 766655 4 666666665543
No 45
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=79.95 E-value=14 Score=29.86 Aligned_cols=81 Identities=14% Similarity=0.239 Sum_probs=58.4
Q ss_pred ccCCcceeEEEcCceEEEEEecC-CC-CccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCC
Q 029160 80 STGQSSVDWLQTDQAYVLKAELP-GV-GKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDAD 157 (198)
Q Consensus 80 ~~~~p~~dv~e~~~~y~i~~dlP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd 157 (198)
....+.+.|..|=....|.|-|| |+ +..+|.+.+... .|.|.-+... .+..+ .|...|+
T Consensus 15 g~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~-hI~V~~kg~~-------~ildG-----------~L~~~vk 75 (179)
T KOG2265|consen 15 GADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSK-HIKVGLKGQP-------PILDG-----------ELSHSVK 75 (179)
T ss_pred CccccceeeeeehhheEEEeecCCCCcccceEEEEeeee-EEEEecCCCC-------ceecC-----------ccccccc
Confidence 33557788999988899998776 87 888999999977 5777644222 11221 3667888
Q ss_pred CCCeEEEEcCCCEEEEEEccCCC
Q 029160 158 WRKTEAYLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 158 ~~~i~A~~~~GgvL~I~lPK~~~ 180 (198)
++...-++++| .+.|.+-|+..
T Consensus 76 ~des~WtiEd~-k~i~i~l~K~~ 97 (179)
T KOG2265|consen 76 VDESTWTIEDG-KMIVILLKKSN 97 (179)
T ss_pred cccceEEecCC-EEEEEEeeccc
Confidence 89999999999 66666655544
No 46
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=79.63 E-value=4.2 Score=28.61 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=27.1
Q ss_pred eEEEEEecC-CCCccceEEEE-ECCeEEEEEEE
Q 029160 94 AYVLKAELP-GVGKNQVQVSV-ENGKIVEISGQ 124 (198)
Q Consensus 94 ~y~i~~dlP-G~~~edI~V~v-~~~~~L~I~g~ 124 (198)
.|.=++.|| +++.+.|+=++ .+| +|+|+|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dG-vL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDG-ILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCC-EEEEEec
Confidence 778889999 99999999998 689 9999986
No 47
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=75.13 E-value=5.5 Score=28.28 Aligned_cols=35 Identities=0% Similarity=0.071 Sum_probs=30.4
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCCCC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPST 181 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~~~ 181 (198)
.|.-...|| +++.+.|+-++.+| .|+|+.-++...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~-~L~I~ger~~~~ 43 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDG-KVQVSAERENRY 43 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEeccc
Confidence 577788999 89999999999999 999999886543
No 48
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=74.15 E-value=6 Score=27.75 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.9
Q ss_pred CceEEEEEecCCCCccceEEEEECCeEEEEEE
Q 029160 92 DQAYVLKAELPGVGKNQVQVSVENGKIVEISG 123 (198)
Q Consensus 92 ~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g 123 (198)
-..|.-.+.||.+.++.++-++.+| +|+|+-
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 3567777899999999999999999 999975
No 49
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=69.98 E-value=9.4 Score=26.84 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=30.4
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCCCC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPST 181 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~~~ 181 (198)
.|.-.+.|| +++.+.|+-.+.++ .|+|+..++...
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~-~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENN-QLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEcccc
Confidence 678889999 79999999999998 999998876554
No 50
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=69.39 E-value=25 Score=30.27 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=69.0
Q ss_pred CCcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCe
Q 029160 82 GQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (198)
Q Consensus 82 ~~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 161 (198)
..-..||..|+...+|.|..-|..++.-.|..+.- .|.|.-..... . .+|...+.|=.-|+++..
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ivf~~g--n------------a~fd~d~kLwgvvnve~s 277 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVSIVFGFG--N------------ASFDLDYKLWGVVNVEES 277 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEEEEecCC--C------------ceeeccceeeeeechhhc
Confidence 44567999999999999999999999999988866 68887664311 1 158888888888999998
Q ss_pred EEEEcCCCEEEEEEccCCCCC
Q 029160 162 EAYLSNDVFLEIRIPKNPSTC 182 (198)
Q Consensus 162 ~A~~~~GgvL~I~lPK~~~~~ 182 (198)
.+.+-.- -..|+|+|.++..
T Consensus 278 ~v~m~~t-kVEIsl~k~ep~s 297 (320)
T KOG1667|consen 278 SVVMGET-KVEISLKKAEPGS 297 (320)
T ss_pred eEEeecc-eEEEEEeccCCCC
Confidence 8998888 9999999998753
No 51
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=68.39 E-value=11 Score=26.39 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~ 178 (198)
.|.-.+.|| +++++.|+-++.+| +|+|+.-+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~-~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDD-YVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEc
Confidence 688889998 89999999999999 999998654
No 52
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=67.79 E-value=10 Score=26.63 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=27.8
Q ss_pred CceEEEEEecC-CCCccceEEEEECCeEEEEEE
Q 029160 92 DQAYVLKAELP-GVGKNQVQVSVENGKIVEISG 123 (198)
Q Consensus 92 ~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g 123 (198)
...|.-.+.|| +++.+.|+-++.+| +|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 46899999999 78999999999999 999974
No 53
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=67.06 E-value=12 Score=25.19 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=28.8
Q ss_pred cCceEEEEEecC-CCCccceEEEEECCeEEEEEEE
Q 029160 91 TDQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQ 124 (198)
Q Consensus 91 ~~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~ 124 (198)
....|.-.+.|| +++.+.++..+.+| +|+|...
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEc
Confidence 467899999999 77899999999999 8999854
No 54
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=66.88 E-value=12 Score=25.94 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~ 178 (198)
.|.-.+.|| +++++.|+-++.+| .|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~-~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGD-FVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEc
Confidence 588889999 89999999999999 999998654
No 55
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=66.42 E-value=11 Score=26.31 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=29.0
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~ 179 (198)
.|.-.+.|| +++++.|+.++.+| .|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~-~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDN-LLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECC-EEEEEEEEcc
Confidence 577789998 89999999999999 9999987643
No 56
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=66.31 E-value=4.6 Score=35.10 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=65.8
Q ss_pred CCcceeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCe
Q 029160 82 GQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKT 161 (198)
Q Consensus 82 ~~p~~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 161 (198)
....+|+.+|.....|-+.-|-+..++|.+-+..| +|.|+-+.+.-. . -|.-..+|-+.|+++..
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~~~-----~---------~~~~~~~Ly~ev~P~~~ 239 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRRLR-----L---------WNDITISLYKEVYPDIR 239 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccccc-----h---------HHHhhhhhhhhcCcchh
Confidence 45668888999999999999999999999999988 899986633210 1 25556788889999987
Q ss_pred EEEEcCCCEEEEEEccCCCC
Q 029160 162 EAYLSNDVFLEIRIPKNPST 181 (198)
Q Consensus 162 ~A~~~~GgvL~I~lPK~~~~ 181 (198)
.-+.-.. ++.|+|-|.+..
T Consensus 240 s~k~fsK-~~e~~l~KV~~v 258 (368)
T COG5091 240 SIKSFSK-RVEVHLRKVEMV 258 (368)
T ss_pred hhhhcch-hheehhhhhhhh
Confidence 7776667 889998887653
No 57
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=66.05 E-value=12 Score=26.06 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=29.3
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~ 179 (198)
.|.-.+.|| +++++.|+-+..+| .|+|..-|+.
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~-~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNN-QIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEec
Confidence 578889999 89999999999999 9999987654
No 58
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.66 E-value=14 Score=26.11 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=28.9
Q ss_pred CceEEEEEecC-CCCccceEEEEECCeEEEEEEEeeeec
Q 029160 92 DQAYVLKAELP-GVGKNQVQVSVENGKIVEISGQWKEQR 129 (198)
Q Consensus 92 ~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~ 129 (198)
...|.-++.|| +++.+.|+-.+.+| +|+|...+....
T Consensus 54 ~~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~ 91 (102)
T PF00011_consen 54 YGSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEE 91 (102)
T ss_dssp SEEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSC
T ss_pred cceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEccccc
Confidence 45788899999 78999999999999 899999876654
No 59
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=65.39 E-value=26 Score=25.36 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=32.8
Q ss_pred CCcceeEEEcCceEEEEEecCCC-----CccceEEEEECCeEEEEE
Q 029160 82 GQSSVDWLQTDQAYVLKAELPGV-----GKNQVQVSVENGKIVEIS 122 (198)
Q Consensus 82 ~~p~~dv~e~~~~y~i~~dlPG~-----~~edI~V~v~~~~~L~I~ 122 (198)
..|.+.|+++++.|.|.+--+.. .++...|.-++| .|.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 57999999999999999866554 778888888888 57775
No 60
>PRK10743 heat shock protein IbpA; Provisional
Probab=64.25 E-value=14 Score=28.44 Aligned_cols=32 Identities=6% Similarity=0.080 Sum_probs=26.6
Q ss_pred EEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCC
Q 029160 146 FVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179 (198)
Q Consensus 146 F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~ 179 (198)
|.-...|| +++.+.|+-++.+| +|+|..-++.
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~-~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDN-LLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECC-EEEEEEEECc
Confidence 55556798 89999999999999 9999987654
No 61
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=63.88 E-value=30 Score=22.76 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=32.6
Q ss_pred ceeEE-EcCceEEEEEecCCCCccceEEEEECCeEEEEEEEee
Q 029160 85 SVDWL-QTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWK 126 (198)
Q Consensus 85 ~~dv~-e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~ 126 (198)
++.+. -....|.|++..+|+..-.-.|.+..+....|+.+-+
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 34566 4578999999999999998888888665777776543
No 62
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=60.87 E-value=15 Score=25.31 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=30.2
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCCC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~~ 180 (198)
.|.-.+.|| ++.++.|+-.+.++ .|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~-~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDN-KLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECC-EEEEEEEEeee
Confidence 588889999 69999999999998 99999987654
No 63
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=60.24 E-value=20 Score=25.70 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=27.2
Q ss_pred ceEEEEEecC-CCCccceEEEEE-CCeEEEEEEE
Q 029160 93 QAYVLKAELP-GVGKNQVQVSVE-NGKIVEISGQ 124 (198)
Q Consensus 93 ~~y~i~~dlP-G~~~edI~V~v~-~~~~L~I~g~ 124 (198)
.+|.=.+.|| +++.++|+-.+. +| +|+|++-
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEcC
Confidence 5678889999 999999999999 88 8999863
No 64
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=60.12 E-value=20 Score=25.06 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=29.3
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~ 179 (198)
.|.-.+.|| +++++.|+-++.++ .|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~-~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDG-VVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECC-EEEEEEEECc
Confidence 588889999 89999999999999 9999997643
No 65
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=56.83 E-value=22 Score=24.77 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~ 178 (198)
.|.-.+.|| +++++.|+-++.++ .|+|..-+.
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~-~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGD-FIEIHGKHE 39 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECC-EEEEEEEEc
Confidence 588889998 89999999999999 999998543
No 66
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=56.70 E-value=27 Score=24.50 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=29.3
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCCC
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNPS 180 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~~ 180 (198)
.|.-.+.|| ++.++.|+-++.++ .|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~-~L~I~g~~~~~ 41 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGR-KLVVTGKREKK 41 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECC-EEEEEEEEeee
Confidence 577789998 89999999999999 99999876543
No 67
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=55.15 E-value=25 Score=22.55 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=19.7
Q ss_pred CCCCccceEEEEECCeEEEEEEEeee
Q 029160 102 PGVGKNQVQVSVENGKIVEISGQWKE 127 (198)
Q Consensus 102 PG~~~edI~V~v~~~~~L~I~g~~~~ 127 (198)
+++...+|+|.+.+| .++++|.-..
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESS
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcH
Confidence 356777899999999 7999999754
No 68
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=53.01 E-value=27 Score=27.11 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=26.2
Q ss_pred EEEEEECCCCCCCCCeEEEEcCCCEEEEEEccC
Q 029160 146 FVRRLELPEDADWRKTEAYLSNDVFLEIRIPKN 178 (198)
Q Consensus 146 F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~ 178 (198)
|.-...|| +++.+.|+-.+.+| +|+|+.-++
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~-~LtI~ge~~ 75 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGT-RLTVKGTPE 75 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECC-EEEEEEEEc
Confidence 55567798 89999999999999 999998764
No 69
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=50.82 E-value=62 Score=26.49 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=55.8
Q ss_pred eeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEE
Q 029160 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYL 165 (198)
Q Consensus 86 ~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~ 165 (198)
+-|-.+++-..+.+.|-|+..++++|.+... .|.|.-+. -.+.+|... .=.|-..+++++-.-..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~d-----lqGK~y~~~---------vnnLlk~I~vEks~~kv 141 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHD-----LQGKNYRMI---------VNNLLKPISVEKSSKKV 141 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeee-----cCCcceeee---------hhhhccccChhhccccc
Confidence 5677788889999999999999999999987 67776541 122233221 11355678888877778
Q ss_pred cCCCEEEEEEccCCC
Q 029160 166 SNDVFLEIRIPKNPS 180 (198)
Q Consensus 166 ~~GgvL~I~lPK~~~ 180 (198)
+-. ..-|.+.|.+.
T Consensus 142 Ktd-~v~I~~kkVe~ 155 (224)
T KOG3260|consen 142 KTD-TVLILCKKVEN 155 (224)
T ss_pred ccc-eEEEeehhhhc
Confidence 888 77777755544
No 70
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=49.48 E-value=50 Score=21.84 Aligned_cols=33 Identities=15% Similarity=0.372 Sum_probs=27.7
Q ss_pred ceEEEEEecCC-CCccceEEEEECCeEEEEEEEee
Q 029160 93 QAYVLKAELPG-VGKNQVQVSVENGKIVEISGQWK 126 (198)
Q Consensus 93 ~~y~i~~dlPG-~~~edI~V~v~~~~~L~I~g~~~ 126 (198)
+.|.+.++|++ +++++.+.++.++ .|.|+=.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 56899999985 5999999999998 799986654
No 71
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=49.41 E-value=84 Score=25.36 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.6
Q ss_pred ccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
|++++|++.++ .++|+|.+ |+.++.|.-+ .++...++| .|.|+..
T Consensus 13 P~~V~v~i~~~-~v~VkGp~------------------G~L~~~~~~~------~v~i~~~~~-~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGL-VVTVKGPK------------------GELTRDFWYP------GVTISVEDG-KVVIETE 57 (180)
T ss_pred CCCCEEEEECC-EEEEECCC------------------eEEEEEecCC------cEEEEEECC-EEEEEEC
Confidence 68899999987 89999872 2455444322 356677888 8888755
No 72
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=49.38 E-value=41 Score=25.71 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=27.5
Q ss_pred EEEEEECCCCCCCCCeEEEEcCCCEEEEEEccCC
Q 029160 146 FVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 179 (198)
Q Consensus 146 F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lPK~~ 179 (198)
|.-.+.|| +++.+.|+-.+.++ .|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~-~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGN-TLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECC-EEEEEEEecc
Confidence 55567788 89999999999999 9999998876
No 73
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=44.17 E-value=1.2e+02 Score=24.12 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=31.4
Q ss_pred ccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
|++++|++.++ .|+|+|.+ |+.++.|. |. .++...+++ .|.|..+
T Consensus 7 P~~V~v~i~~~-~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~-~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGN-IVTVKGPK------------------GEVTRELW-YP-----GIEISVEDG-KVVIETD 51 (170)
T ss_pred CCCCEEEEeCC-EEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCC-EEEEEeC
Confidence 58899999988 89999873 24554443 32 355667888 8888755
No 74
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=42.70 E-value=1.2e+02 Score=24.28 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=30.8
Q ss_pred ccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
|++|+|++.++ .|+|+|.+ |..++.| |. .+....+++ .|.|...
T Consensus 11 P~~V~v~~~~~-~v~v~Gp~------------------G~l~~~l--~~-----~i~i~~~~~-~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGN-VVTVKGPK------------------GELSRTL--HP-----GVTVKVEDG-QLTVSRP 54 (175)
T ss_pred CCCcEEEEeCC-EEEEEcCC------------------eEEEEEc--CC-----CeEEEEECC-EEEEEec
Confidence 58899999987 89999872 2455444 43 345566777 8888755
No 75
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=42.44 E-value=33 Score=27.48 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=25.3
Q ss_pred EEecC-CCCccceEEEEE-CCeEEEEEEEeeeec
Q 029160 98 KAELP-GVGKNQVQVSVE-NGKIVEISGQWKEQR 129 (198)
Q Consensus 98 ~~dlP-G~~~edI~V~v~-~~~~L~I~g~~~~~~ 129 (198)
..-|| |++++.|.=.+. +| +|+|+|.+....
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dG-vLtI~ap~~~~~ 152 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDG-VLTIEAPKPPPK 152 (173)
T ss_pred EecCCCCCChhheEEeeCCCc-eEEEEccCCCCc
Confidence 35577 999999999999 67 899999876643
No 76
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=41.70 E-value=53 Score=22.14 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=26.9
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
...-.|.+|.+++.+.++..+.+. -|+|.+.
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPK-HLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcC-EEEEEEC
Confidence 456678899999999999999999 8999886
No 77
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=41.48 E-value=15 Score=28.80 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=18.3
Q ss_pred CCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 152 LPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 152 LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
|-+.+..+.-.+.|.|| ||+|.|+
T Consensus 65 l~e~~~~~~~Dv~y~~G-VLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADG-VLTLKLG 88 (156)
T ss_pred HHhhcCccccccccccc-eEEEEec
Confidence 34455556667789999 9999998
No 78
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=40.82 E-value=1.4e+02 Score=24.34 Aligned_cols=47 Identities=13% Similarity=0.266 Sum_probs=32.0
Q ss_pred ccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
|++++|++.++ .|+|+|.+ |+.++.|.=+ + ..|....++| .|.|+-+
T Consensus 13 P~~V~V~i~~~-~v~VkGp~------------------G~L~~~~~~~-~---~~i~i~~~~~-~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSR-KVTVTGKY------------------GELTRSFRHL-P---VDIKLSKDGK-YIKVEMW 59 (190)
T ss_pred CCCCEEEEECC-EEEEECCC------------------ceEEEEecCC-C---ceEEEEeCCC-EEEEEeC
Confidence 68999999988 89999872 2455444321 1 2466667888 8888755
No 79
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=40.80 E-value=1.3e+02 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=29.3
Q ss_pred CCCccceEEEEECCeEEEEEEEeeeecCCCCCceEEe--------eEEceEEEEEEECCCC
Q 029160 103 GVGKNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSG--------HWWEHGFVRRLELPED 155 (198)
Q Consensus 103 G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~--------er~~g~F~r~~~LP~~ 155 (198)
-..++++. +.+| .|+|++.+..........|.+. ...+|.|.-++++|..
T Consensus 34 ~~~~~nv~--v~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAY--VEDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeE--EECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 34566655 4588 7999988654321111223222 2345788889999864
No 80
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=37.79 E-value=1.4e+02 Score=23.92 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=30.6
Q ss_pred ccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
|++|+|.+.++ .|+|+|.+ |..++.| |.. +....+++ .|.|...
T Consensus 12 P~~V~v~~~~~-~v~vkGp~------------------G~l~~~~--~~~-----v~i~~~~~-~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGN-VVTVKGPK------------------GELSRTL--NPD-----VTVKVEDN-EITVTRP 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCC------------------EEEEEEc--CCC-----eEEEEECC-EEEEEcC
Confidence 58899999988 89999872 3455555 433 45566777 7777754
No 81
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=36.50 E-value=1.5e+02 Score=20.72 Aligned_cols=16 Identities=6% Similarity=-0.056 Sum_probs=11.3
Q ss_pred CeEEEEcCCCEEEEEEc
Q 029160 160 KTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 160 ~i~A~~~~GgvL~I~lP 176 (198)
.+++.++|| -+++++-
T Consensus 69 ~l~i~~kDg-k~r~~~~ 84 (91)
T PF14730_consen 69 TLIIDCKDG-KYRLTIT 84 (91)
T ss_pred EEEEEEECC-EEEEEEE
Confidence 356777888 7777764
No 82
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=35.79 E-value=1.6e+02 Score=23.82 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=29.0
Q ss_pred CceEEEEEecCCCCccceEEEEECCeEEEEEEEeeeecC
Q 029160 92 DQAYVLKAELPGVGKNQVQVSVENGKIVEISGQWKEQRD 130 (198)
Q Consensus 92 ~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~ 130 (198)
++.|+=.+.||--..+-.++++.+| +|.|.-++..+..
T Consensus 135 ~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 135 GEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred CCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 3335556788866788889999999 9999988776543
No 83
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=33.33 E-value=76 Score=22.59 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=27.0
Q ss_pred EEEEEEECCCCCCCCCeEEEEcCCCEEEEEE
Q 029160 145 GFVRRLELPEDADWRKTEAYLSNDVFLEIRI 175 (198)
Q Consensus 145 ~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~l 175 (198)
...-+|+||.++..+.+...++.. -|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSR-DISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcC-EEEEEE
Confidence 466678999999999999999999 999988
No 84
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=32.46 E-value=2e+02 Score=24.57 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=26.4
Q ss_pred EEEEECCeEEEEEEEeeeecC---------CCCCceEEee------EEceEEEEEEECCC
Q 029160 110 QVSVENGKIVEISGQWKEQRD---------PRAKDWRSGH------WWEHGFVRRLELPE 154 (198)
Q Consensus 110 ~V~v~~~~~L~I~g~~~~~~~---------~~~~~~~~~e------r~~g~F~r~~~LP~ 154 (198)
.|.+.+| .|+|++.++.... .....|.+.+ ..||.|.-+++||.
T Consensus 45 Nv~v~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 4567889 6999998764211 1111233322 25688999999754
No 85
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=32.23 E-value=1.6e+02 Score=23.57 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=29.8
Q ss_pred ccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
|+.|+|+++++ .|+|+|.+- +.. ..||.. +....+++ .|.|..+
T Consensus 12 P~~V~v~i~~~-~v~vkGp~G------------------~l~--~~~~~~-----v~i~~~~~-~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQ-IIKVKGPKG------------------TLS--RKIPDL-----ITIEIQDN-SLFVSKK 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCCE------------------EEE--EECCCC-----eEEEEeCC-EEEEEcC
Confidence 57889999987 899998732 343 345543 45566777 7777754
No 86
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=31.20 E-value=38 Score=22.45 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=19.2
Q ss_pred CCccceEEEEECCeEEEEEEEeee
Q 029160 104 VGKNQVQVSVENGKIVEISGQWKE 127 (198)
Q Consensus 104 ~~~edI~V~v~~~~~L~I~g~~~~ 127 (198)
|+.+.|.|....| .|.|+|+.=.
T Consensus 23 f~~~~I~l~t~~g-~l~I~G~~L~ 45 (66)
T PF07873_consen 23 FDDEEIRLNTKKG-KLTIKGEGLV 45 (66)
T ss_dssp EETTEEEEEETTE-EEEEEEEEEE
T ss_pred ECCCEEEEEeCCE-EEEEECceEE
Confidence 5688999999999 7999999643
No 87
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=30.75 E-value=70 Score=24.69 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=22.1
Q ss_pred CCCCccceEEEEECCeEEEEEEEeeee
Q 029160 102 PGVGKNQVQVSVENGKIVEISGQWKEQ 128 (198)
Q Consensus 102 PG~~~edI~V~v~~~~~L~I~g~~~~~ 128 (198)
.|+...+|+|.+.+| +++++|.....
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 578888899999999 89999997653
No 88
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=30.60 E-value=44 Score=22.04 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=10.6
Q ss_pred CCeEEEEcCCCEEEE
Q 029160 159 RKTEAYLSNDVFLEI 173 (198)
Q Consensus 159 ~~i~A~~~~GgvL~I 173 (198)
..|+|.|+|| ||.-
T Consensus 3 ~~I~aiYe~G-vlkP 16 (60)
T PF01954_consen 3 KVIEAIYENG-VLKP 16 (60)
T ss_dssp --EEEEEETT-EEEE
T ss_pred ceEEEEEECC-EEEE
Confidence 4589999999 8864
No 89
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=30.48 E-value=1.4e+02 Score=24.04 Aligned_cols=47 Identities=11% Similarity=0.219 Sum_probs=26.5
Q ss_pred ccceEEEEECCeEEEEEEEeeeecCCC--CCceE-EeeEEceEEEEEEECCCC
Q 029160 106 KNQVQVSVENGKIVEISGQWKEQRDPR--AKDWR-SGHWWEHGFVRRLELPED 155 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~--~~~~~-~~er~~g~F~r~~~LP~~ 155 (198)
++++.| .+| .|+|++.++...... ...+. .....+|.|+-++++|..
T Consensus 31 ~~nv~v--~~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEF--SDG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEE--ECC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 456554 478 699988765321100 11111 123457889999999864
No 90
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=28.10 E-value=2.2e+02 Score=23.09 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=30.3
Q ss_pred ccceEEEEECCeEEEEEEEeeeecCCCCCceEEeeEEceEEEEEEECCCCCCCCCeEEEEcCCCEEEEEEc
Q 029160 106 KNQVQVSVENGKIVEISGQWKEQRDPRAKDWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIP 176 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~~GgvL~I~lP 176 (198)
|+.++|+++++ .|+|+|.+- +.++ .||.. + -.|....+++ .|.|+-+
T Consensus 12 P~~V~V~i~~~-~ItVkGpkG------------------~Ls~--~~~~~-~-~~i~i~~~~~-~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDR-IVTVKGKRG------------------TLTK--DLRHL-Q-LDFRVNKKNR-TFTAVRW 58 (189)
T ss_pred CCCCEEEEeCC-EEEEECCCc------------------EEEE--EcCCC-C-cEEEEEecCC-EEEEEeC
Confidence 68999999987 899998732 3443 34431 0 1355566777 8888744
No 91
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=26.76 E-value=49 Score=23.29 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCcceeEEEcCceEEEE--EecCCCCccceEEEEECCeEEEEEEEee
Q 029160 82 GQSSVDWLQTDQAYVLK--AELPGVGKNQVQVSVENGKIVEISGQWK 126 (198)
Q Consensus 82 ~~p~~dv~e~~~~y~i~--~dlPG~~~edI~V~v~~~~~L~I~g~~~ 126 (198)
..|.+.+..... ..|+ -.+=-|+.+.|.|+...| .|.|+|+.=
T Consensus 18 ~~p~itl~gr~~-~~Ien~k~I~~y~~~~I~l~t~~G-~l~I~G~~L 62 (85)
T TIGR02856 18 DLPRITLIGNEH-IYIENHRGLVVFSPEEVKLNSTNG-KITIEGKNF 62 (85)
T ss_pred CCCEEEEECCcE-EEEECccceEEECCCEEEEEcCce-EEEEEcccE
Confidence 345554444332 2222 244456899999999999 799999853
No 92
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=26.32 E-value=3e+02 Score=22.98 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=27.1
Q ss_pred EEEECCeEEEEEEEeeeecC-CCCCceEEe------eEEceEEEEEEECCCC
Q 029160 111 VSVENGKIVEISGQWKEQRD-PRAKDWRSG------HWWEHGFVRRLELPED 155 (198)
Q Consensus 111 V~v~~~~~L~I~g~~~~~~~-~~~~~~~~~------er~~g~F~r~~~LP~~ 155 (198)
|.+.+| .|+|++.+..... .....|.+. ...+|.|.-+++||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 566788 6999998665311 111223322 2346889999999963
No 93
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=25.07 E-value=53 Score=23.96 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=13.9
Q ss_pred CeEEEEcCCCEEEEEEcc
Q 029160 160 KTEAYLSNDVFLEIRIPK 177 (198)
Q Consensus 160 ~i~A~~~~GgvL~I~lPK 177 (198)
.+.+.+.+| ||+|+++.
T Consensus 26 d~D~e~~~g-VLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGG-VLTLTFEN 42 (102)
T ss_pred CeeeecCCC-EEEEEECC
Confidence 367778888 99999985
No 94
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=24.64 E-value=83 Score=23.03 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=14.5
Q ss_pred CCeEEEEcCCCEEEEEEcc
Q 029160 159 RKTEAYLSNDVFLEIRIPK 177 (198)
Q Consensus 159 ~~i~A~~~~GgvL~I~lPK 177 (198)
..+.+.+.+| ||+|+++.
T Consensus 28 ~d~D~e~~~g-VLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGG-VLTLTFGN 45 (105)
T ss_pred cCEeeeccCC-EEEEEECC
Confidence 4677788788 99999983
No 95
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.53 E-value=1.8e+02 Score=21.03 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=27.6
Q ss_pred eeEEEcCceEEEEEecCCCCccceEEEEECCeEEEEEEE
Q 029160 86 VDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEISGQ 124 (198)
Q Consensus 86 ~dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~ 124 (198)
++|.+.+| .|.+..||++ .|+|+.+++ .|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~k-kL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENK-KLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccc-eEEEecc
Confidence 67888888 7788899996 588888887 6888873
No 96
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=23.95 E-value=2.8e+02 Score=23.17 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=23.6
Q ss_pred cceEEEEE-CCeEEEEEEEeeeecCCCCCceEEeeEE------------ceEEEEEEECCC
Q 029160 107 NQVQVSVE-NGKIVEISGQWKEQRDPRAKDWRSGHWW------------EHGFVRRLELPE 154 (198)
Q Consensus 107 edI~V~v~-~~~~L~I~g~~~~~~~~~~~~~~~~er~------------~g~F~r~~~LP~ 154 (198)
+++ .+. +| .|+|++++.. ...|.+.+.. ++.|.-+++||.
T Consensus 46 ~n~--~v~~dG-~L~I~a~~~~-----~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~ 98 (259)
T cd02182 46 ANV--QLSGNG-TLQITPLRDG-----SGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGD 98 (259)
T ss_pred cCE--EEcCCC-eEEEEEEecC-----CCCEEEEEEEECCccccccCCCcEEEEEEEECCC
Confidence 454 455 78 6999998653 1123333221 126788888886
No 97
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=23.87 E-value=62 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=18.4
Q ss_pred cCCCCccceEEEEECCeEEEEEEEe
Q 029160 101 LPGVGKNQVQVSVENGKIVEISGQW 125 (198)
Q Consensus 101 lPG~~~edI~V~v~~~~~L~I~g~~ 125 (198)
+=-|+.+.|.|....| .|.|+|+.
T Consensus 19 V~sfd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 19 VISFDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred EEEECCCEEEEEeCcE-EEEEEcce
Confidence 3345778888888888 78898885
No 98
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=23.87 E-value=5e+02 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=11.4
Q ss_pred EEEECCeEEEEEEEeee
Q 029160 111 VSVENGKIVEISGQWKE 127 (198)
Q Consensus 111 V~v~~~~~L~I~g~~~~ 127 (198)
+.+.+| .|.|++.+..
T Consensus 41 ~~v~dG-~L~I~p~~~~ 56 (321)
T cd02179 41 LFVKDG-NLVIEPTLLE 56 (321)
T ss_pred eEEeCC-eEEEEEeecc
Confidence 356688 6999987653
No 99
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=23.86 E-value=85 Score=23.03 Aligned_cols=17 Identities=6% Similarity=0.147 Sum_probs=14.1
Q ss_pred eEEEEcCCCEEEEEEccC
Q 029160 161 TEAYLSNDVFLEIRIPKN 178 (198)
Q Consensus 161 i~A~~~~GgvL~I~lPK~ 178 (198)
+.+.+.+| ||+|+++..
T Consensus 29 ~D~e~~~g-VLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGG-VLTLTFENG 45 (105)
T ss_pred eeeeccCC-EEEEEECCC
Confidence 67788888 999999864
No 100
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=23.19 E-value=1.1e+02 Score=22.47 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCEEEEEEccC
Q 029160 159 RKTEAYLSNDVFLEIRIPKN 178 (198)
Q Consensus 159 ~~i~A~~~~GgvL~I~lPK~ 178 (198)
..+.+.+.+| ||+|+++..
T Consensus 30 ~d~d~e~~~g-VLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGG-VLTIEFPDG 48 (109)
T ss_dssp STEEEEEETT-EEEEEETTS
T ss_pred CceEEEccCC-EEEEEECCC
Confidence 3688899988 999999654
No 101
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=22.96 E-value=2e+02 Score=18.92 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=14.9
Q ss_pred ccceEEEEECCeEEEEEEE
Q 029160 106 KNQVQVSVENGKIVEISGQ 124 (198)
Q Consensus 106 ~edI~V~v~~~~~L~I~g~ 124 (198)
|+.++|.+.+. .+.+.|.
T Consensus 2 P~gV~v~~~~~-~i~v~G~ 19 (77)
T PF00347_consen 2 PEGVKVTIKGN-IITVKGP 19 (77)
T ss_dssp STTCEEEEETT-EEEEESS
T ss_pred CCcEEEEEeCc-EEEEECC
Confidence 56789999987 7888886
No 102
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=22.68 E-value=4.8e+02 Score=22.91 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=10.5
Q ss_pred EceEEEEEEECCCC
Q 029160 142 WEHGFVRRLELPED 155 (198)
Q Consensus 142 ~~g~F~r~~~LP~~ 155 (198)
.||++.-+.+||.+
T Consensus 113 ~YGrvE~RaKlP~G 126 (330)
T cd08024 113 KYGRVEVRAKLPTG 126 (330)
T ss_pred eceEEEEEEECCCC
Confidence 46778888888865
No 103
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=22.13 E-value=1.1e+02 Score=20.24 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=24.6
Q ss_pred cceeEE-EcCceEEEEEecCCCCccce-EEEEECCeEEEE
Q 029160 84 SSVDWL-QTDQAYVLKAELPGVGKNQV-QVSVENGKIVEI 121 (198)
Q Consensus 84 p~~dv~-e~~~~y~i~~dlPG~~~edI-~V~v~~~~~L~I 121 (198)
..+.+. -..+.|.|.+..+|+.+... .|.+..+....|
T Consensus 38 G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 38 GRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp SEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred ceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 334444 23478999999999998888 588886544443
No 104
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=20.59 E-value=1.6e+02 Score=19.16 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=17.8
Q ss_pred EecCCCC-ccceEEEEECCeEEEEE
Q 029160 99 AELPGVG-KNQVQVSVENGKIVEIS 122 (198)
Q Consensus 99 ~dlPG~~-~edI~V~v~~~~~L~I~ 122 (198)
++-.||. -+.|+|++.+| .|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEECC-EEEEe
Confidence 4556885 45899999999 68886
Done!