BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029161
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VA25|RPIA_PROMA Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain
SARG / CCMP1375 / SS120) GN=rpiA PE=3 SV=1
Length = 237
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 10/145 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I GM++GLGSG +A+ I+ +G +L+ G+LK++IG+PTS A+ GIPL +
Sbjct: 20 IKDGMILGLGSGSTAALMIKSLGEKLKEGSLKEIIGVPTSFQGEVLASQLGIPLRAFSAV 79
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQY--KG 158
S+ID A D AD ++ Q KG + +QEK V + AD+ V +V + K
Sbjct: 80 SKIDLAIDGADEVDPNF-------QLIKGGGACHVQEKLVASIADRFVVVVDSTKIVEKL 132
Query: 159 VLDGSVPVLVQPVNWMETAEEIDDL 183
L+ +PV V P W +E++DL
Sbjct: 133 NLEFKLPVEVLPAAWKLVQKELNDL 157
>sp|Q9ZU38|RPIA_ARATH Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana
GN=At2g01290 PE=2 SV=1
Length = 265
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 9/149 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
++ SGMV+GLG+G + A++ +G LR G L++++GIPTS + +A GIPL
Sbjct: 47 FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALSLGIPLSDLDA 106
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
ID + D AD ++ L V GR S+++EK + A+ K V +V +++ +
Sbjct: 107 HPVIDLSIDGADEVDP-FLNLVKGRGG-----SLLREKMIEGASKKFVVIVDDSKMVKHI 160
Query: 161 DGS---VPVLVQPVNWMETAEEIDDLFIG 186
GS +PV + P W TAE++ L G
Sbjct: 161 GGSKLALPVEIVPFCWKFTAEKLRSLLEG 189
>sp|Q5FQ98|RPIA_GLUOX Ribose-5-phosphate isomerase A OS=Gluconobacter oxydans (strain
621H) GN=rpiA PE=3 SV=1
Length = 231
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 9/141 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ SGMVVGLG+G +A IE +G ++ G ++ GIPTS S ++A AGIPL +
Sbjct: 21 VKSGMVVGLGTGSTAAYMIERLGERVAEGL--EIFGIPTSDDSEDKALKAGIPLTDFSAH 78
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 161
+ID A D AD ++ G+L + G ++++EK V AA + V +V + +L
Sbjct: 79 RRIDIAIDGADEVQRGSLNLIKGLGG-----ALLREKIVAQAAKRFVVIVDGTKPVDLLG 133
Query: 162 GSVPVLVQPVN--WMETAEEI 180
PV V+ ++ W TAE +
Sbjct: 134 ERAPVPVEVISFGWECTAERL 154
>sp|Q0I7L2|RPIA_SYNS3 Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9311)
GN=rpiA PE=3 SV=1
Length = 238
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I GMVVGLGSG +A+ IE +G +L AG L+D++G+ TS AA GIPL T
Sbjct: 20 IRDGMVVGLGSGSTAALMIEGLGARLAAGQLRDIVGVTTSFQGEVLAAELGIPLRALNAT 79
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGV- 159
+ID A D AD ++ Q KG + +QEK V + A++ + +V +
Sbjct: 80 DRIDLAIDGADEVDPSF-------QLIKGGGACHVQEKLVADRAERFIVVVDSTKLVRCL 132
Query: 160 -LDGSVPVLVQPVNWMETAEEI 180
LD +PV V P W++ +
Sbjct: 133 NLDFLLPVEVLPGAWVQVQSRL 154
>sp|Q72J47|RPIA_THET2 Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27
/ ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1
Length = 227
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ GMVVGLG+G + A+ + R+LR G LK V+G+PTS A+ A GIPL
Sbjct: 19 YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDL-P 77
Query: 101 TSQIDFAFDDADIIEEG-TLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 159
+D A D AD I G L+ +G ++++EK V AA + + + + V
Sbjct: 78 PEGVDLAIDGADEIAPGLALIKGMG-------GALLREKIVERAAKEFIVIADHTKKVPV 130
Query: 160 LD-GSVPVLVQPVNWMETAEEIDDL 183
L G VPV + P + T + I DL
Sbjct: 131 LGRGPVPVEIVPFGYRATLKAIADL 155
>sp|B2G5S0|RPIA_LACRJ Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain JCM
1112) GN=rpiA PE=3 SV=1
Length = 227
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
YI SGM+VGLG+G ++ +G+Q++ G +KD+IG+ TS +A +A GI + D
Sbjct: 17 YIKSGMIVGLGTGSTVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDD 76
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
ID D AD I + + G G +++ EK V NA++K++++V E++ L
Sbjct: 77 VDHIDLTIDGADEISD-DFQGIKG-----GGGALLWEKIVANASNKVMWIVDESKLVHKL 130
Query: 161 DGSVPVLVQ 169
G+ P+ V+
Sbjct: 131 -GAFPLPVE 138
>sp|A5VI94|RPIA_LACRD Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain DSM
20016) GN=rpiA PE=3 SV=1
Length = 227
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
YI SGM+VGLG+G ++ +G+Q++ G +KD+IG+ TS +A +A GI + D
Sbjct: 17 YIKSGMIVGLGTGSTVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDD 76
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
ID D AD I + + G G +++ EK V NA++K++++V E++ L
Sbjct: 77 VDHIDLTIDGADEISD-DFQGIKG-----GGGALLWEKIVANASNKVMWIVDESKLVHKL 130
Query: 161 DGSVPVLVQ 169
G+ P+ V+
Sbjct: 131 -GAFPLPVE 138
>sp|Q5SIR5|RPIA_THET8 Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=rpiA PE=3 SV=1
Length = 227
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ GMVVGLG+G + A+ + R+LR G LK V+G+PTS A+ A GIPL
Sbjct: 19 YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDL-P 77
Query: 101 TSQIDFAFDDADIIEEG-TLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 159
+D A D AD I G L+ +G ++++EK V A + + + + V
Sbjct: 78 PEGVDLAIDGADEIAPGLALIKGMG-------GALLREKIVERVAKEFIVIADHTKKVPV 130
Query: 160 LD-GSVPVLVQPVNWMETAEEIDDL 183
L G VPV + P + T + I DL
Sbjct: 131 LGRGPVPVEIVPFGYRATLKAIADL 155
>sp|Q7NPM5|RPIA_GLOVI Ribose-5-phosphate isomerase A OS=Gloeobacter violaceus (strain PCC
7421) GN=rpiA PE=3 SV=1
Length = 230
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 9/145 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
+ GMVVGLG+G +A A+ + ++R G V+GIPTS +A +A GI L +
Sbjct: 17 LVEDGMVVGLGTGSTAAFAVSVLAERVRLGL--RVVGIPTSERTARQAEAEGIVLGTLAE 74
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
S++D D AD + G L + G ++++EK V A+++L+ +V + L
Sbjct: 75 QSRVDLTIDGADEVALGELALIKGL-----GGALLREKIVAAASERLIIIVDATKLVEQL 129
Query: 161 --DGSVPVLVQPVNWMETAEEIDDL 183
G +PV V P W TA ++ L
Sbjct: 130 GSHGPLPVEVAPFGWQATARALERL 154
>sp|Q3AHX1|RPIA_SYNSC Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9605)
GN=rpiA PE=3 SV=1
Length = 239
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I GMV+GLGSG +A+ I+ +G +L +G LKD++G+ TS AA IPL
Sbjct: 20 IKDGMVLGLGSGSTAALMIQGLGAKLASGELKDIVGVTTSFQGEVLAAELNIPLLSLNAV 79
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGVL 160
S+ID A D AD ++ G Q KG + +QEK V AD+ V +V + L
Sbjct: 80 SRIDLAIDGADEVDPGF-------QLIKGGGACHVQEKLVAARADRFVVVVDSTKLVDRL 132
Query: 161 DGS--VPVLVQPVNWMETAEEIDDLFIGDAEV 190
+ +PV V P W + ++++ L G AE+
Sbjct: 133 NLGFLLPVEVLPGAWRQVKQQLEALG-GSAEL 163
>sp|A2C4N6|RPIA_PROM1 Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain
NATL1A) GN=rpiA PE=3 SV=1
Length = 236
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I +GM++GLGSG +A+ IE + ++++G +KDV+G+ TS A+ GIPL
Sbjct: 19 IQNGMILGLGSGSTAALMIEALAIKIKSGEIKDVVGVTTSFQGEVLASELGIPLKSLSSV 78
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPK------GDESIIQEKSVLNAADKLVFMVSENQ 155
S+ID A D AD ++ PK G +QEK V A K + +V +
Sbjct: 79 SEIDLAIDGADEVD------------PKFQLIKGGGACHVQEKLVAALAKKFIVVVDSTK 126
Query: 156 Y--KGVLDGSVPVLVQPVNWMETAEEIDDL 183
K LD +PV V P W + + + +L
Sbjct: 127 LVEKLNLDFKLPVEVLPSAWKQVQKTLINL 156
>sp|Q46J18|RPIA_PROMT Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain
NATL2A) GN=rpiA PE=3 SV=1
Length = 236
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 20/150 (13%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I +GM++GLGSG +A+ IE + ++++G +KDV+G+ TS A+ GIPL
Sbjct: 19 IQNGMILGLGSGSTAALMIEALAIKIKSGEIKDVVGVTTSFQGEVLASELGIPLKSLSSV 78
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPK------GDESIIQEKSVLNAADKLVFMVSENQ 155
S+ID A D AD + PK G +QEK V A K + +V +
Sbjct: 79 SEIDLAIDGADEV------------NPKFQLIKGGGACHVQEKLVAALAKKFIVVVDSTK 126
Query: 156 Y--KGVLDGSVPVLVQPVNWMETAEEIDDL 183
K LD +PV V P W + + + +L
Sbjct: 127 LVEKLNLDFKLPVEVLPSAWKQVQKTLINL 156
>sp|B8FL28|RPIA_DESAA Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans
(strain AK-01) GN=rpiA PE=3 SV=1
Length = 230
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ SGMVVGLGSG + AI + R ++ G LKD++GIP+S + A GIPL + +
Sbjct: 18 YLESGMVVGLGSGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTEEVARSLGIPLVGFEE 77
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
+ ID D AD ++ L + G G ++++EK V A K + +V E++ L
Sbjct: 78 HAVIDVTIDGADEVDP-DLNLIKG-----GGGALLREKVVAQATKKNIIIVDESKISDKL 131
Query: 161 DG--SVPVLVQP 170
++PV V P
Sbjct: 132 GTIFALPVEVVP 143
>sp|A9BCI0|RPIA_PROM4 Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain
MIT 9211) GN=rpiA PE=3 SV=1
Length = 237
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I GMV+GLGSG +A+ I+ +G ++ +G LKD++G+ TS A GIPL
Sbjct: 20 IHDGMVLGLGSGSTAALMIKALGAKISSGHLKDIVGVTTSFQGEVLATELGIPLQGLSAV 79
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGVL 160
SQID A D AD ++ Q KG + +QEK V + A++ V +V ++ L
Sbjct: 80 SQIDLAIDGADEVDSNF-------QLIKGGGACHVQEKLVASLAERFVVVVDSSKIVKTL 132
Query: 161 DGS--VPVLVQPVNWMETAEEIDDL 183
+ + +PV V P W +I ++
Sbjct: 133 NLTFKLPVEVLPSAWQLVKNKIHEI 157
>sp|A5GNH7|RPIA_SYNPW Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH7803)
GN=rpiA PE=3 SV=1
Length = 238
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQI 104
GMVVGLGSG +A+ I+ +G +L AG L D++G+ TS AA GIPL +I
Sbjct: 23 GMVVGLGSGSTAALMIKGLGERLAAGQLSDIVGVTTSFQGEVLAAELGIPLRSLNAVDRI 82
Query: 105 DFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGVLDGS 163
D A D AD ++ Q KG + +QEK V AD+ + +V + L+
Sbjct: 83 DLAIDGADEVDPAF-------QLIKGGGACHVQEKLVAARADRFIVVVDSTKLVERLNLG 135
Query: 164 --VPVLVQPVNWMETAEEIDDLFIGDAEV 190
+PV V P W++ ++++ + GDAE+
Sbjct: 136 FLLPVEVLPGAWVQISQQLKAMG-GDAEL 163
>sp|B9KYD3|RPIA_THERP Ribose-5-phosphate isomerase A OS=Thermomicrobium roseum (strain
ATCC 27502 / DSM 5159 / P-2) GN=rpiA PE=3 SV=1
Length = 237
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 27 RAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN 86
RA + F + + GM+VGLGSG + +A+ +G +L G +IG+ TS +A
Sbjct: 5 RAKERAARF--AASLVEDGMIVGLGSGSTAELAVRALGERLHDGL--RLIGVATSQRTAA 60
Query: 87 EAAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADK 146
A GI L +ID A D AD +EE +L + GR ++++EK V A +
Sbjct: 61 LARRVGIELRDPDSVDRIDLAIDGADEVEERSLGLLKGRGG-----ALVREKLVARMARR 115
Query: 147 LVFMVSENQYKGVLDGSVPVLVQ--PVNWMETAEEIDDL 183
LV ++ +++ L P+ V+ P W A ++DL
Sbjct: 116 LVIIIDDSKLVAALGARFPLPVEVVPFGWRWCARWLEDL 154
>sp|Q8EN78|RPIA1_OCEIH Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=rpiA1 PE=3 SV=1
Length = 224
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Query: 40 TYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYR 99
T + GM VGLGSG I +G +++ LK + GIP+S +A A AGIPL +
Sbjct: 17 TMVKDGMKVGLGSGSTVYWMIRSLGERIQQDGLK-IEGIPSSNQTATWAEEAGIPLTDFS 75
Query: 100 DTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 159
+ ++D D AD ++ + G ++ +EK + AA + V +V +++
Sbjct: 76 NVKELDITIDGADEVDANNHLI------KGGGAALFREKIIAQAAKEFVIIVDQSKVVET 129
Query: 160 L-DGSVPVLVQPVNWMETAEEIDDL 183
L + S+PV V P +W TA EI L
Sbjct: 130 LGEFSLPVEVLPFSWQRTANEISKL 154
>sp|Q7U8K8|RPIA_SYNPX Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH8102)
GN=rpiA PE=3 SV=1
Length = 239
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I GMV+GLGSG +A+ I+ +G +L +G LKD++G+ TS AA IPL
Sbjct: 20 IKDGMVLGLGSGSTAALMIKALGAKLASGELKDIVGVTTSFQGEVLAAELNIPLLSLNAV 79
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGVL 160
+ID A D AD ++ G Q KG + +QEK V AD+ V +V + L
Sbjct: 80 DRIDLAIDGADEVDPGF-------QLIKGGGACHVQEKLVAARADRFVVVVDSTKLVERL 132
Query: 161 DGS--VPVLVQPVNWMETAEEI 180
+ +PV V P W + +++
Sbjct: 133 NLGFLLPVEVLPGAWRQVQQQL 154
>sp|Q7V5N8|RPIA_PROMM Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain
MIT 9313) GN=rpiA PE=3 SV=1
Length = 238
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I GMV+GLGSG +A+ I+ +G +L +G L+D++G+ TS AA GIPL
Sbjct: 20 IKDGMVLGLGSGSTAALMIQALGAKLASGELRDIVGVTTSFQGEVMAAELGIPLRNLTAV 79
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGVL 160
+ID A D AD ++ Q KG + +QEK V + AD+ V +V + L
Sbjct: 80 DRIDLAIDGADEVDPSF-------QLIKGGGACHVQEKLVASRADRFVVVVDSTKIVDRL 132
Query: 161 DGS--VPVLVQPVNWMETAEEIDDL 183
+ +PV V P W + + +L
Sbjct: 133 NLGFLLPVEVLPGAWRQVQGRLAEL 157
>sp|Q5JH26|RPIA_PYRKO Ribose-5-phosphate isomerase A OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rpiA PE=3 SV=1
Length = 229
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
+I MVVGLG+G +A I Y+G+ L G L+DV G+PTS + A AGIP+ +
Sbjct: 17 FIEDEMVVGLGTGSTTAYFINYLGKLLMEGELEDVYGVPTSHQARLLALEAGIPVVSLDE 76
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
ID A D AD ++ + + GR E II+ + A + +V E++ L
Sbjct: 77 VDAIDIAVDGADEVDP-HMNLIKGRGAALTMEKIIEYR-----AGMFIVLVDESKLVEYL 130
Query: 161 DGSVPVLVQ--PVNWMETAEEID 181
+PV ++ P W AEE++
Sbjct: 131 GQKMPVPIEVIPAAWRAIAEELE 153
>sp|Q8DJF2|RPIA_THEEB Ribose-5-phosphate isomerase A OS=Thermosynechococcus elongatus
(strain BP-1) GN=rpiA PE=3 SV=1
Length = 236
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ SGMVVGLG+G +A I+++G +LR G L +++G+PTS ++ A GIPL D
Sbjct: 21 VQSGMVVGLGTGSTTAFVIQFLGDRLRKGELSNIVGVPTSFQASVLAKKYGIPLVTLDDV 80
Query: 102 SQIDFAFDDAD 112
++D A D AD
Sbjct: 81 EKLDIAIDGAD 91
>sp|Q2JSC9|RPIA_SYNJA Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain
JA-3-3Ab) GN=rpiA PE=3 SV=1
Length = 230
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ SGMVVGLG+G +A A+ + ++++ L+ IG+PTS +A +A GIPL +
Sbjct: 19 VQSGMVVGLGTGSTAAFAVGALAQRMQKEGLQ-FIGVPTSERTAEQARSLGIPLATLEEQ 77
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 161
++D A D AD IE G+L + G ++++EK V +A +L+ + ++ L
Sbjct: 78 PRLDLAIDGADEIEVGSLNLIKG-----AGGALLREKLVEASAAELIIIADASKKVAHLG 132
Query: 162 GSVPVLVQPVN--WMETAEEIDDL 183
PV V+ V W T ++ L
Sbjct: 133 TRFPVPVEVVRFGWKTTLARVEAL 156
>sp|A2C6S4|RPIA_PROM3 Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain
MIT 9303) GN=rpiA PE=3 SV=1
Length = 238
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I GMV+GLGSG +A+ I+ +G +L +G L++++G+ TS AA GIPL
Sbjct: 20 IKDGMVLGLGSGSTAALMIQALGAKLASGELREIVGVTTSFQGEVMAAELGIPLRNLTAV 79
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGVL 160
+ID A D AD ++ Q KG + +QEK V + AD+ V +V + L
Sbjct: 80 DRIDLAIDGADEVDPSF-------QLIKGGGACHVQEKLVASRADRFVVVVDSTKIVDRL 132
Query: 161 DGS--VPVLVQPVNWMETAEEIDDL 183
+ +PV V P W + + +L
Sbjct: 133 NLGFLLPVEVLPGAWRQVQGRLAEL 157
>sp|A7HS32|RPIA_PARL1 Ribose-5-phosphate isomerase A OS=Parvibaculum lavamentivorans
(strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpiA PE=3
SV=1
Length = 231
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 11/142 (7%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
++ GM +G+G+G + + +G +++AG D++G+PTS +A AA GIPL D
Sbjct: 17 FVKPGMKLGMGTGSTAEHFVRALGEKVKAGL--DIVGVPTSERTAKLAASLGIPLTNLDD 74
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
T +D D AD + +G L + G G ++++EK V A+D+++ + ++ L
Sbjct: 75 TPHLDITVDGADEL-DGKLRLIKG-----GGGALLREKIVATASDRMIVIADASKLVKTL 128
Query: 161 DGSVPVLVQ--PVNWMETAEEI 180
GS P+ V+ P TA +I
Sbjct: 129 -GSFPLPVEVIPFGSAVTARKI 149
>sp|Q3AZA8|RPIA_SYNS9 Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9902)
GN=rpiA PE=3 SV=1
Length = 239
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 30 KHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89
KH V V+ I GMV+GLGSG +A+ I +G +L +G LK+++G+ TS AA
Sbjct: 9 KHAVADAAVE-QIKDGMVLGLGSGSTAALMIRALGAKLASGELKNIVGVTTSFQGEVLAA 67
Query: 90 VAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLV 148
IPL +ID A D AD ++ Q KG + +QEK V AD+ V
Sbjct: 68 ELNIPLLSLNAVDRIDLAIDGADEVDPSF-------QLIKGGGACHVQEKLVAAMADRFV 120
Query: 149 FMVSENQY--KGVLDGSVPVLVQPVNWME 175
+V + + LD +PV V P W +
Sbjct: 121 VVVDSTKLVDRLNLDFLLPVEVLPGAWRQ 149
>sp|Q7V003|RPIA_PROMP Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rpiA PE=3 SV=1
Length = 231
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ GM++GLGSG +A+ I+ + ++R+G LK++ G+PTS S A IPL
Sbjct: 13 VEDGMILGLGSGSTAALMIKSLAEKIRSGKLKNIKGVPTSFQSEVLALELNIPLIDLASV 72
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGVL 160
ID A D AD ++ Q KG + ++EK V + A+KL+ ++ E++ L
Sbjct: 73 PYIDLAIDGADEVDPDF-------QLIKGGGACHVREKLVASKANKLLIVIDESKLVQNL 125
Query: 161 DG--SVPVLVQPVNWMETAEEIDDL 183
+ +PV V P W + + I ++
Sbjct: 126 NQVFPLPVEVMPSAWKQVKDIISEM 150
>sp|Q18E67|RPIA_HALWD Ribose-5-phosphate isomerase A OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpiA PE=3 SV=1
Length = 236
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ G +VGLG+G +A AI+ +G + AG D+ G+PTS A+ + A AGIPL +
Sbjct: 21 YVNDGDIVGLGTGSTAAAAIDALGDAVAAG--YDIHGVPTSFATRDRAIEAGIPLTRIEA 78
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
ID A D +D I L + G G + +EK + AD+ + + E++ L
Sbjct: 79 VDHIDVAIDGSDEINN-NLTLIKG-----GGAAHAREKVIDATADQFIVVADESKLVETL 132
Query: 161 DGSVPVLVQPVNWMETAEEIDDL 183
VPV P+ +D L
Sbjct: 133 SEPVPVSTLPMAQKPVKHRLDSL 155
>sp|Q5N3J1|RPIA_SYNP6 Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=rpiA PE=3 SV=2
Length = 232
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 40 TYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYR 99
+ + SGMVVGLGSG +A+ I+Y+G ++R G L ++ +PTS S+ A GIPL
Sbjct: 17 SRVQSGMVVGLGSGSTAALMIQYLGDRVRNGELTNIQAVPTSFQSSVLANEYGIPLTTLN 76
Query: 100 DTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKG 158
+ +ID A D AD ++ R KG + +EK V A++ + +V ++
Sbjct: 77 EVDRIDIAIDGADEVDP-------QRNLIKGGGACHTREKLVDARAEQFIVVVDSSKLVE 129
Query: 159 VLDGS--VPVLVQPVNWMETAEEIDDL 183
L + +PV V P +++ + ++ L
Sbjct: 130 ALGTTFLLPVEVLPEAYIQVGKALEKL 156
>sp|B9LU09|RPIA_HALLT Ribose-5-phosphate isomerase A OS=Halorubrum lacusprofundi (strain
ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpiA PE=3
SV=1
Length = 240
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPL---DQY 98
+T G VVGLG+G +A AI +G ++ +G D+ G+ TS AS AA GIPL D+
Sbjct: 22 VTDGEVVGLGTGSTAAHAIRRLGDRVDSGL--DIRGVATSFASRELAAECGIPLLDLDEA 79
Query: 99 --RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQY 156
D + ID A D AD + G + +G G + +EK V +AD+ + + ++
Sbjct: 80 VGSDATGIDIAIDGADQVAVGEGESEVGPLIKGGGAAHAREKLVDASADRFLVVADPSKE 139
Query: 157 KGVLDGSVPVLVQPVNWMETAEEI 180
VL+ SVPV V P AE +
Sbjct: 140 TPVLNRSVPVEVLPAGRSAVAEAV 163
>sp|A5GVF8|RPIA_SYNR3 Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain RCC307)
GN=rpiA PE=3 SV=1
Length = 237
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 30 KHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89
K V D + +GMV+GLGSG +A+ I+ +G +LR G L D++G+ TS AA
Sbjct: 9 KQAVALAATD-QVKNGMVLGLGSGSTAALMIQEVGARLRDGRLTDIVGVTTSFQGEVLAA 67
Query: 90 VAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVF 149
GIPL +ID A D AD ++ + G +QEK V A++ V
Sbjct: 68 ELGIPLQSLNAIDRIDLAIDGADEVDPAFELI------KGGGACHVQEKLVARRAERFVV 121
Query: 150 MVSENQYKGVLDGS--VPVLVQPVNWMETAEEIDDL 183
+V + L+ +PV V W + E+ L
Sbjct: 122 VVDSTKLVERLNLGFLLPVEVLAGAWRQVQAELQQL 157
>sp|Q318Q3|RPIA_PROM9 Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain
MIT 9312) GN=rpiA PE=3 SV=1
Length = 237
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ S M++GLGSG + + I+ + +R+G L+++ G+ TS S A IPL
Sbjct: 19 VKSDMILGLGSGSTAVLMIKSLADAIRSGKLQNIKGVATSFQSEVLALELDIPLIDLASV 78
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI-IQEKSVLNAADKLVFMVSENQYKGVL 160
SQID A D AD ++ G Q KG + ++EK V + A++L+ +V E + L
Sbjct: 79 SQIDLAIDGADEVDPGF-------QLIKGGGACHVREKLVASKANQLLIVVDETKLVRKL 131
Query: 161 DGS--VPVLVQPVNWMETAEEIDDL 183
+ S +PV V P W + E I ++
Sbjct: 132 NQSFPLPVEVLPNAWKQVQEVISEM 156
>sp|Q111U2|RPIA_TRIEI Ribose-5-phosphate isomerase A OS=Trichodesmium erythraeum (strain
IMS101) GN=rpiA PE=3 SV=1
Length = 237
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ SGM+VGLG+G +A I+++G L+ G LKD+ GIPTS S A G+PL +
Sbjct: 23 VKSGMIVGLGTGSTTAYMIQFLGELLQRGELKDIKGIPTSFQSTVLAKKYGVPLTTLDEV 82
Query: 102 SQIDFAFDDAD 112
+D A D AD
Sbjct: 83 DYMDIAIDGAD 93
>sp|Q92D46|RPIA_LISIN Ribose-5-phosphate isomerase A OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=rpiA PE=3 SV=1
Length = 224
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
+I GMVVGLG+G IE +G ++ G ++ G+ TS+ + +A GIPL D
Sbjct: 15 WIEDGMVVGLGTGSTVYYTIEKLGEMVQKGL--NITGVSTSIETEQQARTLGIPLKSLND 72
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
++ID D AD I + + G G ++++EK V A+ K +++V E + L
Sbjct: 73 VTKIDVTIDGADEINQ-AFQGIKG-----GGGALLREKMVAQASSKNIWVVGEEKLVTEL 126
Query: 161 DG-SVPVLVQPVNWMETAEEIDD 182
+P+ V P W + +++
Sbjct: 127 GKFPLPLEVIPFGWKQIKRMLEN 149
>sp|Q8YYG2|RPIA_NOSS1 Ribose-5-phosphate isomerase A OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rpiA PE=3 SV=1
Length = 236
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ SG +VGLG+G +A I+Y+G +L++G L D++GIPTS S + G+PL
Sbjct: 23 VKSGSIVGLGTGSTTAYTIQYLGDRLKSGELTDIVGIPTSFQSEVLSKQYGVPLTTLDAV 82
Query: 102 SQIDFAFDDAD 112
ID A D AD
Sbjct: 83 DHIDIAIDGAD 93
>sp|Q3M4J7|RPIA_ANAVT Ribose-5-phosphate isomerase A OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=rpiA PE=3 SV=1
Length = 236
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ SG +VGLG+G +A I+Y+G +L++G L D++GIPTS S + G+PL
Sbjct: 23 VKSGSIVGLGTGSTTAYTIQYLGDRLKSGELTDIVGIPTSFQSEVLSKQYGVPLTTLDAV 82
Query: 102 SQIDFAFDDAD 112
ID A D AD
Sbjct: 83 DHIDIAIDGAD 93
>sp|Q8TQ69|RPIA_METAC Ribose-5-phosphate isomerase A OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpiA
PE=3 SV=1
Length = 234
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
++SGM+VGLG+G A I+ +GR++R L D++G+ TS S A AGI L
Sbjct: 24 VSSGMLVGLGTGSTVAYTIKELGRRVREEGL-DILGVVTSYQSEMLAIEAGIRLTTLAQH 82
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 161
++D A D AD I+ L A+ G G + +EK V +A + V + E++ LD
Sbjct: 83 PELDLAIDGADQIDS-ELRAIKG-----GGAAHTREKIVSVSARRFVVVADESKTSKQLD 136
Query: 162 GSVPVLVQPVNWMETAEEIDDL 183
VPV V P ++I +L
Sbjct: 137 KLVPVEVLPFAKEPVVKKIREL 158
>sp|Q139E9|RPIA_RHOPS Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris
(strain BisB5) GN=rpiA PE=3 SV=1
Length = 232
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ SGM +GLG+G + +E +G ++R G DVIG+PTS + +A GI L +
Sbjct: 18 VRSGMKLGLGTGSTARHFVELLGEKVRGGL--DVIGVPTSEVTRADAERCGIRLTTLDEI 75
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 161
++D D AD ++ T + +I G ++++EK V A+D+++ + E+++ L
Sbjct: 76 DRLDLTVDGADEVD--TRLELI----KGGGGALLREKIVAAASDRMIVIADESKWVDCLG 129
Query: 162 G-SVPVLVQPVNWMETAEEIDDLF 184
+PV V P T I+ F
Sbjct: 130 KFPLPVEVIPFGLAATRRAIEKAF 153
>sp|P41994|RPIA_CAEEL Probable-ribose 5-phosphate isomerase OS=Caenorhabditis elegans
GN=rpia-1 PE=3 SV=1
Length = 251
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 29 AKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA 88
AK F + Y+ SG +G+GSG +EY+ + + G+LKD+I +PTS +
Sbjct: 17 AKKRAAFACGEKYVQSGCRLGVGSGSTVKYLVEYLKQGFQNGSLKDIICVPTSFLTKQWL 76
Query: 89 AVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLV 148
+G+P+ ++D D AD + +G + G G + QEK V AA
Sbjct: 77 IESGLPVSDLDSHPELDVCIDGADEV-DGQFTCIKG-----GGGCLAQEKIVQTAAKNFY 130
Query: 149 FM---VSENQYKGVLDGSVPVLVQPV 171
+ + ++++ G +VP+ V P+
Sbjct: 131 VIADYLKDSKHLGDRYPNVPIEVLPL 156
>sp|Q58998|RPIA_METJA Ribose-5-phosphate isomerase A OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rpiA PE=1 SV=1
Length = 226
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIP---LDQY 98
+ GMV+GLG+G +A+ I +G ++R L V GIPTS + A IP LD+Y
Sbjct: 18 VKDGMVIGLGTGSTAALFIRELGNRIREEELT-VFGIPTSFEAKMLAMQYEIPLVTLDEY 76
Query: 99 RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKG 158
+D AFD AD +EE TL + G G QEK V A++ V +V E++
Sbjct: 77 ----DVDIAFDGADEVEETTLFLIKG-----GGGCHTQEKIVDYNANEFVVLVDESKLVK 127
Query: 159 VLDGSVPVLVQ 169
L P+ V+
Sbjct: 128 KLGEKFPIPVE 138
>sp|Q9RW24|RPIA_DEIRA Ribose-5-phosphate isomerase A OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=rpiA PE=3 SV=1
Length = 226
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ SG VGLG+G + AIE +GR+L AG L ++G+ TS AS A GIP + D
Sbjct: 18 VQSGQRVGLGTGSTAKYAIEELGRKLAAGELSGIVGVSTSEASEKLAREVGIPTEPL-DP 76
Query: 102 SQIDFAFDDADIIEEGT-LVAVIGRQQPKGDESIIQEKSVLNAAD--KLVFMVSENQYKG 158
+D A D AD I LV +G + + +Q K ++ AD KLV + E
Sbjct: 77 RPLDIAIDGADEIAPNLDLVKGLGGALVREKMTEVQAKRLIIIADHTKLVTRLGEK---- 132
Query: 159 VLDGSVPVLVQPVNWMETAEEIDDLFIG 186
+P+ + P ++ T E + + G
Sbjct: 133 ---APLPIEIVPFGFLSTIERLREFLPG 157
>sp|Q0AR22|RPIA_MARMM Ribose-5-phosphate isomerase A OS=Maricaulis maris (strain MCS10)
GN=rpiA PE=3 SV=1
Length = 233
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
YI SGM +GLGSG + + + +G +++ G DV G+PTS +A AA G+PL
Sbjct: 17 YIESGMTLGLGSGSTAEIFLRLLGEKIKDGL--DVRGVPTSQRTAQIAAENGVPLIDVDH 74
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQ--PKGDESIIQEKSVLNAADKLVFMVSENQYKG 158
+ I D AD ++ GR Q G +++EK + +A+D ++ MV E++
Sbjct: 75 VNNIAITIDGADEVD--------GRFQLIKGGGACLLREKIIAHASDLMIVMVDESKLVA 126
Query: 159 VLDGSVPVLVQ 169
L G P+ V+
Sbjct: 127 TL-GKFPLPVE 136
>sp|A7I6S5|RPIA_METB6 Ribose-5-phosphate isomerase A OS=Methanoregula boonei (strain 6A8)
GN=rpiA PE=3 SV=1
Length = 237
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ GMV+GLG+G AIE + ++R G V+G+PTS +A +A GIPL D
Sbjct: 23 VEDGMVIGLGTGSTVFYAIECLSGRIRDGL--SVVGVPTSYQTAMKAREYGIPLTTLDDN 80
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 161
+D A D AD + + GR +I +EK V +AA + + +V E + L
Sbjct: 81 PVLDLAIDGADQADP-QFRLIKGR-----GAAITREKCVASAAFRFIVVVDEAKMVKKLA 134
Query: 162 GSVPVLVQP 170
G VPV P
Sbjct: 135 GVVPVETLP 143
>sp|Q5UZD7|RPIA_HALMA Ribose-5-phosphate isomerase A OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpiA
PE=3 SV=1
Length = 228
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 47 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDF 106
VVGLG+G +A AI +G+ + AG DV+G+PTS S A GIPL D S +D
Sbjct: 26 VVGLGTGSTAAYAIRAIGQAVDAGL--DVVGVPTSFQSRQLARDCGIPLADLDDVS-VDL 82
Query: 107 AFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDGSVPV 166
A D AD + G L+ G + +EK V +AD+ + + + VL VPV
Sbjct: 83 AIDGADEVASGNLIK-------GGGAAHAREKIVDASADRFLVVADPTKEAAVLSYPVPV 135
Query: 167 LVQPVNWMETAEEIDDL 183
V P+ +++L
Sbjct: 136 EVLPMARSTVVTAVEEL 152
>sp|B8G2V0|RPIA_CHLAD Ribose-5-phosphate isomerase A OS=Chloroflexus aggregans (strain
MD-66 / DSM 9485) GN=rpiA PE=3 SV=1
Length = 237
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I GMV+GLG G +A A +G +L G L++++G+P + +A A GIPL D
Sbjct: 19 IQPGMVIGLGFGSTAAYATRMIGERLANGELREIVGVPCAEGTAALARELGIPLTTLDDV 78
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
++D D AD ++ +A+I G ++++EK V A+ ++ +V E++ L
Sbjct: 79 ERVDITIDGADEVDP--YMALI----KGGGGALLREKMVAQASRRVAIIVDESKLSPAL 131
>sp|Q9V0L6|RPIA_PYRAB Ribose-5-phosphate isomerase A OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpiA PE=3 SV=1
Length = 229
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 14/155 (9%)
Query: 28 AAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANE 87
AAK + F I MV+GLG+G +A I +G ++ G + D++G+PTS S
Sbjct: 10 AAKEALKF------IEDDMVIGLGTGSTTAYFIRLLGDMIKKGEVSDIVGVPTSYQSRLL 63
Query: 88 AAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKL 147
A +GIP+ ID A D AD ++ L + GR E II+ + A
Sbjct: 64 AIESGIPVATLDQVDAIDVAVDGADEVDP-NLNLIKGRGAALTMEKIIESR-----AGMF 117
Query: 148 VFMVSENQYKGVLDGSVPVLVQ--PVNWMETAEEI 180
+ +V E + L +PV ++ P W EE+
Sbjct: 118 IVLVDERKLVDYLCQKMPVPIEVIPQAWRAIVEEL 152
>sp|A6UUZ8|RPIA_META3 Ribose-5-phosphate isomerase A OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpiA PE=3 SV=1
Length = 234
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
+I GM+VGLGSG + + I +G+++ L +V G+PTS S A GIPL +
Sbjct: 24 FIKDGMIVGLGSGTTANLFIAELGKKISEEGL-NVFGVPTSFESRMMAIQYGIPLVSLDE 82
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
++D A D AD + + TL + G G QEK + A +L+ +V E++ L
Sbjct: 83 YGELDIAVDGADEVNKETLNVIKG-----GGGCHTQEKIIDYCAKELIIIVDESKLVDSL 137
Query: 161 DGSVPVLVQ 169
+ PV ++
Sbjct: 138 GENTPVPLE 146
>sp|Q2IUM8|RPIA_RHOP2 Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris
(strain HaA2) GN=rpiA PE=3 SV=1
Length = 232
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ GM +GLG+G + +E +G ++RAG DVIG+PTS + +A GI L +
Sbjct: 18 VRDGMKIGLGTGSTAKHFVELLGEKVRAGL--DVIGVPTSEVTRADAERCGIRLTTLDEI 75
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 161
++D D AD I+ L + G G ++++EK V A+D+++ + E ++ L
Sbjct: 76 DRLDLTVDGADEIDP-RLELIKG-----GGGALLREKIVAAASDRMIVIADETKWVDCLG 129
Query: 162 G-SVPVLVQPVNWMETAEEID 181
+PV V P T I+
Sbjct: 130 HFPLPVEVIPFGLAATRRAIE 150
>sp|Q3ITP9|RPIA_NATPD Ribose-5-phosphate isomerase A OS=Natronomonas pharaonis (strain
DSM 2160 / ATCC 35678) GN=rpiA PE=3 SV=1
Length = 225
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+ GMVVGLG+G +A +I +G+++ G D+ GIPTS S A A IPL +
Sbjct: 22 VEDGMVVGLGTGSTAAASIRELGQRVEEGL--DIRGIPTSYQSRQLAREADIPLTTLEEA 79
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 161
+ D A D AD + G L+ G + +EK V AAD+ + + E + LD
Sbjct: 80 TP-DVAIDGADQVAAGDLIK-------GGGAAHAREKLVDAAADRFLVVADETKLSPTLD 131
Query: 162 GSVPVLVQP 170
VPV V P
Sbjct: 132 IPVPVEVLP 140
>sp|B8HN58|RPIA_CYAP4 Ribose-5-phosphate isomerase A OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=rpiA PE=3 SV=1
Length = 237
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
+TSG VVGLG+G +A+ I+ +G +L G L ++ G+PTS ++ A GIPL +
Sbjct: 23 VTSGAVVGLGTGSTTALMIQCLGERLAKGELANIKGVPTSFQASVLAKQYGIPLVTLDEV 82
Query: 102 SQIDFAFDDADIIE-EGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
+ID A D AD ++ + L+ G + +EK V AD + +V ++ L
Sbjct: 83 EKIDLAIDGADEVDPQKNLIK-------GGGAAHTREKVVDALADLFIVVVDSSKLVDQL 135
Query: 161 DGSVPVLVQ 169
+ PV V+
Sbjct: 136 GSTFPVPVE 144
>sp|Q721J0|RPIA_LISMF Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype
4b (strain F2365) GN=rpiA PE=3 SV=1
Length = 224
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
+I GMVVGLG+G IE +G + G + G+ TS ++ +A GIPL D
Sbjct: 15 WIKDGMVVGLGTGSTVYYTIEKLGEMVNNGL--HITGVATSEETSKQAQNLGIPLKSLND 72
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQY-KGV 159
++ID D AD I+ + G G ++++EK V +A+ K +++VSE + + +
Sbjct: 73 VAEIDITIDGADEIDT-DFQGIKG-----GGGALLREKMVASASLKNIWVVSEEKLVRNL 126
Query: 160 LDGSVPVLVQPVNWMETAEEIDDLFI 185
+P+ V P W + ++ I
Sbjct: 127 GKFPLPIEVIPFGWKQIERTLEKEHI 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,186,855
Number of Sequences: 539616
Number of extensions: 2680080
Number of successful extensions: 9769
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 9478
Number of HSP's gapped (non-prelim): 363
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)