Query 029161
Match_columns 198
No_of_seqs 163 out of 1067
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02384 ribose-5-phosphate is 100.0 2.4E-43 5.2E-48 304.9 18.4 174 4-194 20-198 (264)
2 PRK13978 ribose-5-phosphate is 100.0 5.3E-42 1.2E-46 291.6 17.9 158 22-194 5-165 (228)
3 COG0120 RpiA Ribose 5-phosphat 100.0 7.8E-42 1.7E-46 289.2 16.3 157 22-194 4-161 (227)
4 PRK00702 ribose-5-phosphate is 100.0 3.6E-41 7.8E-46 285.7 16.6 157 22-194 4-161 (220)
5 TIGR00021 rpiA ribose 5-phosph 100.0 5.7E-41 1.2E-45 284.1 17.0 155 25-194 2-157 (218)
6 cd01398 RPI_A RPI_A: Ribose 5- 100.0 8.8E-40 1.9E-44 275.7 17.4 157 24-195 1-158 (213)
7 KOG3075 Ribose 5-phosphate iso 100.0 1.9E-32 4.1E-37 234.1 15.1 165 18-193 21-189 (261)
8 PF06026 Rib_5-P_isom_A: Ribos 100.0 2.1E-30 4.5E-35 212.7 10.0 115 75-196 1-116 (173)
9 PF00455 DeoRC: DeoR C termina 99.9 1.7E-27 3.6E-32 192.7 11.7 122 20-159 1-142 (161)
10 PRK10681 DNA-binding transcrip 99.9 5.2E-26 1.1E-30 195.7 12.8 152 14-183 68-246 (252)
11 PRK10906 DNA-binding transcrip 99.9 8.5E-26 1.8E-30 194.7 13.2 127 15-159 68-214 (252)
12 PRK09802 DNA-binding transcrip 99.9 1.4E-25 3E-30 195.0 14.0 156 13-188 81-263 (269)
13 PRK10411 DNA-binding transcrip 99.9 4.7E-25 1E-29 188.9 12.7 127 14-159 69-215 (240)
14 COG1349 GlpR Transcriptional r 99.9 8.4E-25 1.8E-29 188.6 14.0 127 15-159 68-214 (253)
15 PRK13509 transcriptional repre 99.9 1.3E-24 2.8E-29 187.0 13.8 149 15-183 70-244 (251)
16 PRK10434 srlR DNA-bindng trans 99.9 1.5E-24 3.3E-29 187.1 14.3 151 14-183 67-245 (256)
17 TIGR00524 eIF-2B_rel eIF-2B al 98.2 1.9E-05 4E-10 70.3 12.0 130 22-170 102-259 (303)
18 PRK08335 translation initiatio 98.2 4E-05 8.7E-10 67.5 13.2 134 19-170 90-238 (275)
19 COG1184 GCD2 Translation initi 98.1 4.2E-05 9.2E-10 68.1 12.6 122 20-159 101-236 (301)
20 TIGR00511 ribulose_e2b2 ribose 98.1 4.6E-05 1E-09 67.7 12.8 131 22-170 99-245 (301)
21 PRK08535 translation initiatio 98.1 2.9E-05 6.3E-10 69.2 11.4 131 22-170 104-250 (310)
22 TIGR00512 salvage_mtnA S-methy 98.1 5.1E-05 1.1E-09 68.4 12.4 130 22-170 126-287 (331)
23 PRK05720 mtnA methylthioribose 97.9 0.00017 3.6E-09 65.5 12.4 130 23-170 131-287 (344)
24 PF01008 IF-2B: Initiation fac 97.8 0.00018 4E-09 62.4 9.7 121 21-160 90-226 (282)
25 KOG1466 Translation initiation 97.7 0.00041 8.8E-09 60.9 10.3 129 24-171 116-262 (313)
26 PRK06371 translation initiatio 97.7 0.001 2.3E-08 60.0 13.0 128 23-169 121-276 (329)
27 PRK05772 translation initiatio 97.7 0.00086 1.9E-08 61.3 12.5 132 19-169 147-306 (363)
28 PRK06036 translation initiatio 97.5 0.0019 4E-08 58.6 12.4 127 23-169 132-285 (339)
29 COG2057 AtoA Acyl CoA:acetate/ 97.2 0.00022 4.8E-09 61.0 2.9 108 23-156 6-151 (225)
30 PRK08334 translation initiatio 97.1 0.012 2.5E-07 53.8 13.1 130 22-170 144-300 (356)
31 PRK06372 translation initiatio 97.0 0.013 2.7E-07 51.2 11.4 116 24-159 73-200 (253)
32 TIGR02428 pcaJ_scoB_fam 3-oxoa 96.6 0.0096 2.1E-07 50.3 7.4 107 24-153 2-143 (207)
33 PF04198 Sugar-bind: Putative 96.5 0.0023 4.9E-08 55.4 3.4 94 22-122 32-162 (255)
34 PRK09920 acetyl-CoA:acetoacety 96.3 0.01 2.2E-07 50.8 6.1 47 25-81 4-53 (219)
35 COG1788 AtoD Acyl CoA:acetate/ 96.2 0.031 6.8E-07 47.8 8.3 48 25-82 4-54 (220)
36 TIGR02429 pcaI_scoA_fam 3-oxoa 96.1 0.035 7.6E-07 47.5 8.3 43 29-81 9-54 (222)
37 COG2390 DeoR Transcriptional r 95.9 0.01 2.2E-07 53.4 4.4 51 23-79 95-145 (321)
38 KOG1465 Translation initiation 95.4 0.17 3.7E-06 45.5 10.2 130 26-173 150-301 (353)
39 PRK15418 transcriptional regul 95.2 0.02 4.4E-07 51.2 3.8 52 24-80 97-148 (318)
40 TIGR03458 YgfH_subfam succinat 95.2 0.075 1.6E-06 50.4 7.7 113 29-155 5-160 (485)
41 TIGR01584 citF citrate lyase, 94.9 0.21 4.6E-06 47.4 9.7 103 42-154 40-189 (492)
42 cd00458 SugarP_isomerase Sugar 94.1 0.24 5.1E-06 40.1 7.2 39 44-82 20-58 (169)
43 PF02550 AcetylCoA_hydro: Acet 93.2 0.16 3.4E-06 42.2 4.9 124 23-161 6-173 (198)
44 PF04223 CitF: Citrate lyase, 93.2 0.42 9.1E-06 44.8 7.9 106 41-153 16-165 (466)
45 KOG1467 Translation initiation 92.3 0.8 1.7E-05 43.6 8.5 136 18-170 334-489 (556)
46 COG0427 ACH1 Acetyl-CoA hydrol 90.2 0.68 1.5E-05 44.1 5.9 120 20-153 10-171 (501)
47 COG3051 CitF Citrate lyase, al 88.2 1.1 2.4E-05 41.6 5.6 106 41-153 61-210 (513)
48 COG0182 Predicted translation 86.8 7.8 0.00017 35.3 10.1 127 23-170 134-290 (346)
49 PF04223 CitF: Citrate lyase, 86.6 3.9 8.4E-05 38.5 8.2 52 17-69 202-253 (466)
50 PF01144 CoA_trans: Coenzyme A 85.3 2.1 4.6E-05 35.5 5.5 38 40-82 10-51 (217)
51 TIGR01110 mdcA malonate decarb 79.7 27 0.00059 33.8 11.1 106 39-153 35-183 (543)
52 COG0802 Predicted ATPase or ki 79.0 3.2 6.9E-05 33.6 4.1 75 18-110 4-82 (149)
53 PF02254 TrkA_N: TrkA-N domain 78.3 8.8 0.00019 28.0 6.1 46 47-97 1-46 (116)
54 PRK00443 nagB glucosamine-6-ph 77.3 3 6.6E-05 35.5 3.7 38 44-81 33-72 (261)
55 COG0373 HemA Glutamyl-tRNA red 76.2 21 0.00046 33.4 9.2 79 28-116 168-251 (414)
56 TIGR01584 citF citrate lyase, 75.4 4 8.6E-05 39.0 4.3 40 22-67 229-274 (492)
57 COG2230 Cfa Cyclopropane fatty 74.4 5.9 0.00013 35.2 4.9 58 17-89 52-112 (283)
58 PF08679 DsrD: Dissimilatory s 73.8 0.28 6E-06 34.6 -2.9 33 21-58 29-61 (67)
59 cd01399 GlcN6P_deaminase GlcN6 70.5 6.5 0.00014 32.6 4.1 27 40-66 13-41 (232)
60 KOG2828 Acetyl-CoA hydrolase [ 67.8 9.6 0.00021 35.6 4.8 106 40-153 34-173 (454)
61 COG3051 CitF Citrate lyase, al 67.7 20 0.00043 33.6 6.8 54 15-69 245-298 (513)
62 PF01488 Shikimate_DH: Shikima 66.8 17 0.00038 27.9 5.5 68 40-111 8-83 (135)
63 COG1102 Cmk Cytidylate kinase 61.4 3.3 7.1E-05 34.4 0.5 52 51-110 10-65 (179)
64 COG4670 Acyl CoA:acetate/3-ket 60.9 14 0.0003 35.5 4.6 50 25-80 4-57 (527)
65 cd00423 Pterin_binding Pterin 57.5 42 0.00091 28.8 6.7 61 26-96 24-100 (258)
66 PF05991 NYN_YacP: YacP-like N 56.1 32 0.00069 27.8 5.4 51 46-97 69-119 (166)
67 COG0378 HypB Ni2+-binding GTPa 53.1 20 0.00042 30.5 3.8 41 51-97 23-69 (202)
68 PRK10646 ADP-binding protein; 53.0 24 0.00053 28.5 4.3 38 20-65 9-50 (153)
69 PF00070 Pyr_redox: Pyridine n 49.5 31 0.00067 23.7 3.9 30 47-81 2-31 (80)
70 PF02353 CMAS: Mycolic acid cy 46.0 36 0.00078 29.7 4.6 56 18-88 43-101 (273)
71 TIGR03458 YgfH_subfam succinat 44.9 29 0.00062 33.2 4.0 52 22-83 222-283 (485)
72 PRK10669 putative cation:proto 42.1 76 0.0017 30.2 6.5 49 44-97 417-465 (558)
73 PRK05928 hemD uroporphyrinogen 41.1 51 0.0011 26.9 4.6 54 44-97 177-230 (249)
74 COG0329 DapA Dihydrodipicolina 40.3 60 0.0013 28.7 5.1 58 19-82 53-110 (299)
75 cd00739 DHPS DHPS subgroup of 39.9 1.1E+02 0.0023 26.5 6.6 76 7-97 10-101 (257)
76 PF02367 UPF0079: Uncharacteri 39.0 24 0.00051 27.4 2.1 33 26-66 2-38 (123)
77 PF02558 ApbA: Ketopantoate re 38.0 1.1E+02 0.0024 23.2 5.8 45 48-98 2-46 (151)
78 PRK13940 glutamyl-tRNA reducta 37.0 1.6E+02 0.0036 27.3 7.7 68 42-113 179-252 (414)
79 TIGR00150 HI0065_YjeE ATPase, 35.9 68 0.0015 25.2 4.3 37 22-66 5-45 (133)
80 PRK11613 folP dihydropteroate 35.6 1.3E+02 0.0027 26.7 6.4 59 28-96 40-114 (282)
81 cd02042 ParA ParA and ParB of 35.1 1.5E+02 0.0033 20.8 5.8 18 140-157 58-75 (104)
82 cd06578 HemD Uroporphyrinogen- 34.9 1E+02 0.0022 24.8 5.4 52 46-98 175-226 (239)
83 PF02602 HEM4: Uroporphyrinoge 34.7 54 0.0012 26.7 3.8 52 44-97 168-219 (231)
84 COG2242 CobL Precorrin-6B meth 34.3 2.8E+02 0.006 23.3 7.9 75 22-110 19-109 (187)
85 TIGR00284 dihydropteroate synt 32.5 1.5E+02 0.0033 28.5 6.8 62 26-97 165-233 (499)
86 cd00408 DHDPS-like Dihydrodipi 32.2 98 0.0021 26.4 5.1 57 18-80 45-101 (281)
87 PF13738 Pyr_redox_3: Pyridine 31.6 52 0.0011 26.0 3.1 35 42-81 165-199 (203)
88 PF02824 TGS: TGS domain; Int 31.3 36 0.00077 22.8 1.7 26 42-67 5-30 (60)
89 TIGR00460 fmt methionyl-tRNA f 31.2 2.5E+02 0.0053 24.9 7.6 60 47-110 3-85 (313)
90 PRK08811 uroporphyrinogen-III 30.9 81 0.0018 27.3 4.3 53 44-97 190-242 (266)
91 PRK03562 glutathione-regulated 30.3 1.5E+02 0.0031 29.1 6.4 49 44-97 400-448 (621)
92 PF02698 DUF218: DUF218 domain 30.3 1.2E+02 0.0026 23.2 4.9 46 41-86 67-112 (155)
93 PRK03659 glutathione-regulated 29.9 1.6E+02 0.0034 28.6 6.5 49 44-97 400-448 (601)
94 PRK04020 rps2P 30S ribosomal p 29.1 2.8E+02 0.0062 23.4 7.2 72 23-100 52-145 (204)
95 cd08242 MDR_like Medium chain 28.7 3.6E+02 0.0078 22.8 8.1 66 41-111 152-222 (319)
96 PRK11524 putative methyltransf 28.5 39 0.00085 29.4 2.0 22 42-64 206-230 (284)
97 PRK05205 bifunctional pyrimidi 28.4 58 0.0013 26.3 2.8 25 42-66 93-121 (176)
98 PRK07239 bifunctional uroporph 28.4 1.2E+02 0.0025 27.3 5.1 51 45-95 202-257 (381)
99 COG0371 GldA Glycerol dehydrog 28.3 1.6E+02 0.0035 27.1 6.0 51 22-84 70-120 (360)
100 PRK05752 uroporphyrinogen-III 28.2 1.6E+02 0.0034 24.9 5.6 49 46-96 184-232 (255)
101 PF00156 Pribosyltran: Phospho 28.1 72 0.0016 23.2 3.1 17 50-66 98-114 (125)
102 cd05213 NAD_bind_Glutamyl_tRNA 28.0 4.1E+02 0.009 23.3 9.1 50 44-97 178-228 (311)
103 PRK10494 hypothetical protein; 27.5 2.1E+02 0.0046 24.7 6.4 54 42-98 151-207 (259)
104 PF07021 MetW: Methionine bios 27.5 2.2E+02 0.0047 24.1 6.1 96 37-152 6-110 (193)
105 TIGR01496 DHPS dihydropteroate 27.1 2.4E+02 0.0051 24.4 6.6 76 7-97 9-100 (257)
106 TIGR01012 Sa_S2_E_A ribosomal 26.6 3.1E+02 0.0068 23.0 7.0 72 23-100 46-139 (196)
107 PRK09189 uroporphyrinogen-III 26.5 1.4E+02 0.0031 24.8 5.0 47 46-92 172-218 (240)
108 PRK06136 uroporphyrin-III C-me 25.9 2.9E+02 0.0063 23.0 6.8 68 40-114 75-148 (249)
109 cd08177 MAR Maleylacetate redu 25.8 2.5E+02 0.0054 24.9 6.7 39 45-89 79-117 (337)
110 COG1117 PstB ABC-type phosphat 25.7 2.4E+02 0.0052 24.8 6.2 67 14-90 146-216 (253)
111 PRK13753 dihydropteroate synth 25.6 3.7E+02 0.0081 23.8 7.6 78 7-97 11-101 (279)
112 TIGR01821 5aminolev_synth 5-am 25.4 2.3E+02 0.0049 25.3 6.4 43 14-62 81-123 (402)
113 TIGR03590 PseG pseudaminic aci 25.3 4.4E+02 0.0094 22.6 8.8 47 49-100 11-61 (279)
114 cd00950 DHDPS Dihydrodipicolin 25.3 1.6E+02 0.0036 25.2 5.3 58 18-81 48-105 (284)
115 PRK06719 precorrin-2 dehydroge 24.8 3.5E+02 0.0076 21.4 7.5 33 43-80 12-44 (157)
116 PRK10834 vancomycin high tempe 24.7 2E+02 0.0044 24.9 5.7 66 24-98 98-167 (239)
117 COG1412 Uncharacterized protei 24.3 2.3E+02 0.0049 22.6 5.4 27 74-100 99-125 (136)
118 PF15157 IQ-like: IQ-like 24.2 39 0.00084 25.2 1.0 16 7-22 71-86 (97)
119 PF08284 RVP_2: Retroviral asp 24.1 33 0.00072 26.8 0.6 70 47-116 34-106 (135)
120 cd00954 NAL N-Acetylneuraminic 24.0 1.8E+02 0.004 25.2 5.4 54 21-80 52-105 (288)
121 PRK04147 N-acetylneuraminate l 23.7 1.5E+02 0.0033 25.7 4.8 56 20-81 54-109 (293)
122 PRK03170 dihydrodipicolinate s 23.6 1.8E+02 0.0038 25.2 5.2 57 19-81 50-106 (292)
123 PF08241 Methyltransf_11: Meth 23.5 79 0.0017 21.2 2.5 35 48-90 3-37 (95)
124 PF02826 2-Hacid_dh_C: D-isome 22.9 1E+02 0.0022 24.7 3.3 68 44-116 35-104 (178)
125 TIGR00201 comF comF family pro 22.7 72 0.0016 25.9 2.4 34 42-79 150-187 (190)
126 TIGR01918 various_sel_PB selen 22.4 6.8E+02 0.015 23.8 9.6 60 40-100 302-372 (431)
127 TIGR01465 cobM_cbiF precorrin- 22.3 3.7E+02 0.008 22.0 6.7 65 42-113 68-138 (229)
128 PF02492 cobW: CobW/HypB/UreG, 22.2 1.2E+02 0.0025 24.3 3.5 94 49-157 8-127 (178)
129 PRK14694 putative mercuric red 22.0 2.6E+02 0.0056 25.8 6.2 48 44-96 178-236 (468)
130 TIGR03169 Nterm_to_SelD pyridi 22.0 3.9E+02 0.0084 23.3 7.1 53 45-97 146-210 (364)
131 PRK13512 coenzyme A disulfide 21.8 2.7E+02 0.0059 25.5 6.3 48 44-96 148-207 (438)
132 PRK13393 5-aminolevulinate syn 21.6 1.3E+02 0.0029 26.9 4.2 43 14-62 81-123 (406)
133 PF04977 DivIC: Septum formati 21.4 1.7E+02 0.0036 19.8 3.8 25 20-50 52-76 (80)
134 PF13344 Hydrolase_6: Haloacid 21.4 1.9E+02 0.0042 21.0 4.3 33 57-94 20-57 (101)
135 PRK13392 5-aminolevulinate syn 21.2 1.5E+02 0.0033 26.6 4.5 46 13-64 81-127 (410)
136 PF04900 Fcf1: Fcf1; InterPro 21.2 3.1E+02 0.0067 19.8 5.4 26 75-100 67-93 (101)
137 COG0634 Hpt Hypoxanthine-guani 21.1 82 0.0018 26.3 2.4 36 40-79 89-128 (178)
138 cd00952 CHBPH_aldolase Trans-o 21.0 1.7E+02 0.0036 25.9 4.6 55 19-80 57-112 (309)
139 TIGR02053 MerA mercuric reduct 20.9 2.8E+02 0.0062 25.4 6.2 33 44-81 166-198 (463)
140 TIGR02884 spore_pdaA delta-lac 20.8 2.5E+02 0.0054 23.4 5.4 46 27-81 175-221 (224)
141 TIGR02764 spore_ybaN_pdaB poly 20.8 2.9E+02 0.0064 22.0 5.7 45 26-80 139-187 (191)
142 PF00732 GMC_oxred_N: GMC oxid 20.7 82 0.0018 26.7 2.5 21 46-66 2-22 (296)
143 PRK09162 hypoxanthine-guanine 20.4 73 0.0016 25.9 2.0 25 42-66 95-123 (181)
144 TIGR01203 HGPRTase hypoxanthin 20.0 91 0.002 25.0 2.5 25 42-66 82-110 (166)
No 1
>PLN02384 ribose-5-phosphate isomerase
Probab=100.00 E-value=2.4e-43 Score=304.86 Aligned_cols=174 Identities=35% Similarity=0.548 Sum_probs=158.3
Q ss_pred ccccCCCCCchHHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHH
Q 029161 4 TMIRGSSSSDSSRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVA 83 (198)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~ 83 (198)
.|+.||||- .|+ ..+.|+++|++|+ ++|++||+||||||||+.+++++|+++.+.+.++++++||+|.+
T Consensus 20 ~~~~~~~~~----~m~-~~~~K~~aA~~A~------~~V~~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~ 88 (264)
T PLN02384 20 SMLSPSSPV----ILT-QDELKKIAAYKAV------EFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKK 88 (264)
T ss_pred CcCCCCCCC----CCC-HHHHHHHHHHHHH------HhccCCCEEEecchHHHHHHHHHHHHhhhhccccceEEEcCcHH
Confidence 477777773 332 2447999999999 99999999999999999999999999987777778999999999
Q ss_pred HHHHHHHcCCCEEEcCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC--
Q 029161 84 SANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-- 161 (198)
Q Consensus 84 ~a~~l~~~gi~v~~l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-- 161 (198)
++.+|+++|+++..+.+..++|++|||||+||+ ++++|||||+ |+++||+++++|+++|+|+|++|++++||
T Consensus 89 T~~~a~~~GIpl~~l~~v~~iDiaiDGADEId~-~lnlIKGGGg-----allrEKivA~~A~~~IiI~DesK~V~~Lg~~ 162 (264)
T PLN02384 89 THEQAVSLGIPLSDLDSHPVVDLAIDGADEVDP-NLNLVKGRGG-----SLLREKMIEGACKKFVVIVDESKLVKHIGGS 162 (264)
T ss_pred HHHHHHHcCCcEeccccCCcccEEEECCceeCC-CCCEEEeCcH-----HHHHHHHHHHhcCeEEEEEeCcceecccCCC
Confidence 999999999999999998899999999999999 8999999999 99999999999999999999999999997
Q ss_pred -CcccEEEecCCHHHHHHHHHhhcC--CCceeEeCC
Q 029161 162 -GSVPVLVQPVNWMETAEEIDDLFI--GDAEVFSIP 194 (198)
Q Consensus 162 -~~ipvEV~p~~~~~v~~~l~~lf~--g~~~~~R~~ 194 (198)
.|+||||+|++|.+|.++|+++|. |..+.+|++
T Consensus 163 ~~plPVEV~p~a~~~v~~~L~~l~~~~g~~~~lR~~ 198 (264)
T PLN02384 163 GLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTK 198 (264)
T ss_pred CCCEEEEECccHHHHHHHHHHHHhhccCCceEEecc
Confidence 389999999999999999999874 567888975
No 2
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=5.3e-42 Score=291.64 Aligned_cols=158 Identities=23% Similarity=0.374 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~ 101 (198)
.+.|++.|++|+ ++|++||+||||||||+.+++++|+++.+.+.+ ++++||+|.+++.+|+++|+++..+.+.
T Consensus 5 ~~~K~~aa~~A~------~~V~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l-~i~~VptS~~t~~~a~~~Gipl~~l~~~ 77 (228)
T PRK13978 5 KALKLMTLNDVL------SQINGDMTLGIGTGSTMELLLPQMAQLIKERGY-NITGVCTSNKIAFLAKELGIKICEINDV 77 (228)
T ss_pred HHHHHHHHHHHH------HhCCCCCEEEeCchHHHHHHHHHHHHHhhccCc-cEEEEeCcHHHHHHHHHcCCcEechhhC
Confidence 457999999999 999999999999999999999999998876666 6999999999999999999999999998
Q ss_pred CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC--CcccEEEecCCHHHHHHH
Q 029161 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAEE 179 (198)
Q Consensus 102 ~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg--~~ipvEV~p~~~~~v~~~ 179 (198)
.++|++|||||+||+ ++++|||||+ |++|||+++++|+++|+|+|+||++++|| +|+||||+|++|++|.++
T Consensus 78 ~~iDiaiDGADevd~-~lnlIKGgGg-----al~rEKiva~~A~~~iii~D~sK~v~~Lg~~~plPVEV~p~~~~~v~~~ 151 (228)
T PRK13978 78 DHIDLAIDGADEVDP-SLNIIKGGGG-----ALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRK 151 (228)
T ss_pred CceeEEEecCceecC-CccEEecCcH-----HHHHHHHHHHhcCcEEEEEeCcceecccCCCCCeEEEEcccHHHHHHHH
Confidence 899999999999999 8999999999 99999999999999999999999999998 599999999999999999
Q ss_pred HHhhcCCC-ceeEeCC
Q 029161 180 IDDLFIGD-AEVFSIP 194 (198)
Q Consensus 180 l~~lf~g~-~~~~R~~ 194 (198)
|+++ |+ .+.+|..
T Consensus 152 l~~l--g~~~~~~R~~ 165 (228)
T PRK13978 152 IESY--ADIKVERRVN 165 (228)
T ss_pred HHHc--CCCCcEEEec
Confidence 9997 64 6677754
No 3
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-42 Score=289.17 Aligned_cols=157 Identities=31% Similarity=0.519 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~ 101 (198)
.+.|+..|++|+ ++|++||+||||||||+.+|+++|.++.+.+ + +++.||+|.+++.+|+++||++..+...
T Consensus 4 ~~~K~~aa~~A~------~~v~~gmviGlGTGST~~~fI~~Lg~~~~~e-~-~i~~V~TS~~t~~l~~~~GI~v~~l~~~ 75 (227)
T COG0120 4 DELKKAAAKAAL------EYVKDGMVIGLGTGSTAAYFIEALGRRVKGE-L-DIGGVPTSFQTEELARELGIPVSSLNEV 75 (227)
T ss_pred HHHHHHHHHHHH------HHhcCCCEEEEcCcHHHHHHHHHHHHhhccC-c-cEEEEeCCHHHHHHHHHcCCeecCcccc
Confidence 568999999999 9999999999999999999999999754433 3 7999999999999999999999999998
Q ss_pred CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHHHHHHH
Q 029161 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEI 180 (198)
Q Consensus 102 ~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~v~~~l 180 (198)
.++|+||||||+||+ ++++|||||+ |++|||+++++|+++|||+|+||++++|| +|+||||+|++|.+|.+++
T Consensus 76 ~~lDl~iDGADEvd~-~~~lIKGGGg-----Al~rEKIva~~ak~~IvIvDesKlV~~LG~fplPVEVip~a~~~v~r~l 149 (227)
T COG0120 76 DSLDLAIDGADEVDP-NLNLIKGGGG-----ALLREKIVASAAKRFIVIVDESKLVEVLGKFPLPVEVIPFARSAVLRKL 149 (227)
T ss_pred CccceEeecccccCC-CCCEEccChH-----HHHHHHHHHHhcCeEEEEEeCccchhhcCCCCcCEEEchhHHHHHHHHH
Confidence 889999999999999 7999999999 99999999999999999999999999999 7999999999999999999
Q ss_pred HhhcCCCceeEeCC
Q 029161 181 DDLFIGDAEVFSIP 194 (198)
Q Consensus 181 ~~lf~g~~~~~R~~ 194 (198)
+++ |..+.||.+
T Consensus 150 ~~~--g~~~~lR~~ 161 (227)
T COG0120 150 EKL--GGKPTLREG 161 (227)
T ss_pred HHh--CCCcccccc
Confidence 998 999999964
No 4
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=3.6e-41 Score=285.72 Aligned_cols=157 Identities=32% Similarity=0.499 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~ 101 (198)
.++|++||++|+ ++|++||+||||+|||+.+++++|.++.+.+ + ++|+||||+.++.++...|++++.+.+.
T Consensus 4 ~~~K~~IA~~Aa------~lI~dg~~IgLgsGST~~~l~~~L~~~~~~~-~-~itvVt~S~~~a~~l~~~gi~v~~l~~~ 75 (220)
T PRK00702 4 DELKKAAAEAAA------EYVEDGMIVGLGTGSTAAYFIDALGERVKEG-L-IIGGVPTSEASTELAKELGIPLFDLNEV 75 (220)
T ss_pred HHHHHHHHHHHH------HhCCCCCEEEECCcHHHHHHHHHHHhhhccC-C-CEEEECCcHHHHHHHHhCCCeEEcHHHC
Confidence 568999999999 9999999999999999999999998764322 2 6999999999999998889999999987
Q ss_pred CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHHHHHHH
Q 029161 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEI 180 (198)
Q Consensus 102 ~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~v~~~l 180 (198)
.++|++|||||+||+ +++++||+|+ +++|||+++++|+++|+|+|+|||+++|| +|+||||+|++|++|.++|
T Consensus 76 ~~iD~afdGaD~vd~-~~~~ikg~g~-----a~~~ekiva~~A~~~vil~D~sK~v~~lg~~~lPvEV~p~~~~~v~~~l 149 (220)
T PRK00702 76 DSLDLYVDGADEIDP-HLNLIKGGGA-----ALTREKIVAAAAKRFICIVDESKLVDVLGKFPLPVEVIPFARSAVAREL 149 (220)
T ss_pred CccCEEEECCCeECC-CCCcEECcHH-----HHHHHHHHHHhcCcEEEEEEcchhhhhcCCCCccEEECccHHHHHHHHH
Confidence 799999999999999 7999999998 99999999999999999999999999997 6999999999999999999
Q ss_pred HhhcCCCceeEeCC
Q 029161 181 DDLFIGDAEVFSIP 194 (198)
Q Consensus 181 ~~lf~g~~~~~R~~ 194 (198)
+++ |+.+.||++
T Consensus 150 ~~~--g~~~~~R~~ 161 (220)
T PRK00702 150 EKL--GGQPELRMD 161 (220)
T ss_pred HHh--CCcceEeCC
Confidence 998 889999963
No 5
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=100.00 E-value=5.7e-41 Score=284.14 Aligned_cols=155 Identities=31% Similarity=0.550 Sum_probs=145.2
Q ss_pred HHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCCCcc
Q 029161 25 LFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQI 104 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~i 104 (198)
|++||++|+ ++|++||+||||+|||+.+++++|.++.+.+++ ++|+||||+.++.+|.+.|++++.+.+..++
T Consensus 2 K~~IA~~A~------~~I~~g~~I~ldsGST~~~~~~~L~~~~~~~~l-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~i 74 (218)
T TIGR00021 2 KRAAAEAAA------EYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELARELGIPLSSLDEVPEL 74 (218)
T ss_pred HHHHHHHHH------HhCCCCCEEEECCcHHHHHHHHHHHHhhhccCC-CEEEEeCCHHHHHHHHHCCCCEEcHhHCCcc
Confidence 889999999 999999999999999999999999987544555 7999999999999998889999999887799
Q ss_pred cEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHHHHHHHHhh
Q 029161 105 DFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDL 183 (198)
Q Consensus 105 D~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~v~~~l~~l 183 (198)
|++|||||+||+ +++++||+|+ +++|||+++++|+++|+|+|+|||+++|| .|+||||+|++|.+|+++|+++
T Consensus 75 DiafdGaD~id~-~~~~ikg~g~-----a~~~eKiia~~A~~~i~l~D~sK~~~~lg~~plPvEV~p~~~~~v~~~l~~~ 148 (218)
T TIGR00021 75 DLAIDGADEVDP-NLQLIKGGGG-----ALLREKIVASASKRFIVIADESKLVDKLGKFPLPVEVVPFAWKAVARKLEKL 148 (218)
T ss_pred CEEEECCCeECC-CCCEecccHH-----HHHHHHHHHHhhCcEEEEEEchhhhcccCCCCccEEECccHHHHHHHHHHHc
Confidence 999999999999 7999999999 99999999999999999999999999997 6999999999999999999997
Q ss_pred cCCCceeEeCC
Q 029161 184 FIGDAEVFSIP 194 (198)
Q Consensus 184 f~g~~~~~R~~ 194 (198)
|+.+.+|++
T Consensus 149 --g~~~~~R~~ 157 (218)
T TIGR00021 149 --GGEPTLRQG 157 (218)
T ss_pred --CCCcEEeec
Confidence 888899974
No 6
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=100.00 E-value=8.8e-40 Score=275.72 Aligned_cols=157 Identities=32% Similarity=0.530 Sum_probs=144.2
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCCCc
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQ 103 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~ 103 (198)
.|++||++|+ ++|++||+||||+|||+.+++++|.++.+.+ ..++|+||||+.++.++.+.+++++.+++.++
T Consensus 1 ~K~~IA~~A~------~~I~~g~~I~ldsGST~~~l~~~L~~~~~~~-~~~itvVTnS~~~a~~l~~~~i~vi~lg~~~~ 73 (213)
T cd01398 1 LKRAAARAAV------DYVEDGMVIGLGTGSTVAYFIEALGERVREE-GLNIVGVPTSFQTEELARELGIPLTDLDEVPR 73 (213)
T ss_pred CHHHHHHHHH------HhCCCCCEEEECchHHHHHHHHHHHHhhhcc-CCCEEEEeCcHHHHHHHHhCCCeEEeCCCccc
Confidence 3899999999 9999999999999999999999998763322 23799999999999988878999999998889
Q ss_pred ccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHHHHHHHHh
Q 029161 104 IDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDD 182 (198)
Q Consensus 104 iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~v~~~l~~ 182 (198)
+|++|+|||++|+ ++++++|+++ ++++||+++++|+++|+|+|+|||+++|| +|+||||+|++|++|.++|++
T Consensus 74 ~D~af~Gad~id~-~~~~~~~~~~-----a~~kek~i~~~a~~~illaD~sK~~~~l~~~~lPvEV~p~~~~~v~~~l~~ 147 (213)
T cd01398 74 LDLAIDGADEVDP-DLNLIKGGGG-----ALLREKIVASAAKKFIVIADESKLVERLGEFPLPVEVVPFAWSYVARELEK 147 (213)
T ss_pred cCEEEECCCcCCC-CcCcccChHH-----HHHHHHHHHHhcCeEEEEEecchhcccCCCCCeeEEEChhhHHHHHHHHHH
Confidence 9999999999999 6888888777 99999999889999999999999999998 799999999999999999999
Q ss_pred hcCCCceeEeCCC
Q 029161 183 LFIGDAEVFSIPY 195 (198)
Q Consensus 183 lf~g~~~~~R~~~ 195 (198)
+ |+.+.||++.
T Consensus 148 ~--g~~~~~R~~~ 158 (213)
T cd01398 148 L--GGKPVLREGS 158 (213)
T ss_pred c--CCCcEEcccC
Confidence 8 9999999865
No 7
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-32 Score=234.14 Aligned_cols=165 Identities=35% Similarity=0.551 Sum_probs=151.8
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
++...+.|++.|.+|. ++++++|++||||||||+.+.+++|.+.+..+.+.+++.||+|+.+++++.++||++..
T Consensus 21 ~~~~e~~kr~Aa~~av-----d~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts~~s~q~~~~~gi~l~~ 95 (261)
T KOG3075|consen 21 LSPQEEAKRLAAYKAV-----DNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFRSAQLALEYGIPLSD 95 (261)
T ss_pred cCchHHHHHHHHhhhh-----hhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecccchhhHHHHHhcCCcccc
Confidence 5555777887777777 68889899999999999999999999988778888999999999999999999999999
Q ss_pred cCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCCC----cccEEEecCCH
Q 029161 98 YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDG----SVPVLVQPVNW 173 (198)
Q Consensus 98 l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg~----~ipvEV~p~~~ 173 (198)
+...+.+|++|+|||+||+ +++++||+|+ ++++||++.-+|+++|++||++|+.+.||. .+|+||+|++|
T Consensus 96 ~d~hp~iDlaidgADEvd~-nln~ikggGg-----~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvEvvpl~~ 169 (261)
T KOG3075|consen 96 LDSHPVIDLAIDGADEVDE-NLNLIKGGGG-----CLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVEVVPLAW 169 (261)
T ss_pred CCCCceeEEEecCchhhCc-CcceEEeccc-----hhhHHHHHHHhhhceEEEeeccccchhhcccccCceeeeehhhHH
Confidence 9999999999999999999 8999999999 999999999999999999999999998863 49999999999
Q ss_pred HHHHHHHHhhcCCCceeEeC
Q 029161 174 METAEEIDDLFIGDAEVFSI 193 (198)
Q Consensus 174 ~~v~~~l~~lf~g~~~~~R~ 193 (198)
..+.+.|.++-.|+.+.||+
T Consensus 170 ~~l~~~l~~~~~g~~~~lR~ 189 (261)
T KOG3075|consen 170 LKLLENLSEFSFGCEAKLRM 189 (261)
T ss_pred HHHHHhhhhhhccchheecc
Confidence 99999999922499999995
No 8
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=99.97 E-value=2.1e-30 Score=212.74 Aligned_cols=115 Identities=30% Similarity=0.502 Sum_probs=99.3
Q ss_pred eEEEcCcHHHHHHHHHcCCCEEEcCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCC
Q 029161 75 VIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSEN 154 (198)
Q Consensus 75 itvVTnS~~~a~~l~~~gi~v~~l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~s 154 (198)
|++||+|.+++.+++++|+++..+.+..++|++|||||+||+ ++++|||+|| |++|||+++++|+++|+|+|++
T Consensus 1 I~~V~tS~~T~~~a~~~Gi~l~~~~~~~~iDl~iDGaDevd~-~l~lIKGgGg-----allrEKiva~~a~~~I~i~Des 74 (173)
T PF06026_consen 1 IVGVPTSEATELLARKLGIPLVDLDEVDRIDLAIDGADEVDP-DLNLIKGGGG-----ALLREKIVASAAKRFIIIVDES 74 (173)
T ss_dssp EEEEESSHHHHHHHHHTT-EBE-GGGSSSEEEEEEE-SEEET-TSEEE--TTS------HHHHHHHHHTEEEEEEEEEGG
T ss_pred CEEECChHHHHHHHHHcCCcEEccccCCcceEEEECchhhcC-CCCEEECCCc-----cchhhhhHHHhhceEEEEECCC
Confidence 689999999999999999999999988899999999999999 8999999999 9999999999999999999999
Q ss_pred ccccCCC-CcccEEEecCCHHHHHHHHHhhcCCCceeEeCCCC
Q 029161 155 QYKGVLD-GSVPVLVQPVNWMETAEEIDDLFIGDAEVFSIPYN 196 (198)
Q Consensus 155 K~~~~lg-~~ipvEV~p~~~~~v~~~l~~lf~g~~~~~R~~~~ 196 (198)
|++++|| .|+||||+|++|.+|.++|++++ |+.+.||++.+
T Consensus 75 K~v~~Lg~~plPvEV~p~a~~~v~~~l~~~~-G~~~~lR~~~~ 116 (173)
T PF06026_consen 75 KLVEKLGKFPLPVEVVPFAWSYVLRRLKELL-GGKPVLRMASG 116 (173)
T ss_dssp GBESSBTSS-EEEEE-GGGHHHHHHHHHHTT-T-EEEE-EETT
T ss_pred cEeeEcCCCceeEEEcHHHHHHHHHHHHHhc-CCCceEccCCC
Confidence 9999996 79999999999999999999932 99999999654
No 9
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=99.95 E-value=1.7e-27 Score=192.69 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=105.3
Q ss_pred cCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHc-CCCEEEc
Q 029161 20 NGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA-GIPLDQY 98 (198)
Q Consensus 20 ~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~-gi~v~~l 98 (198)
+|.++|++||++|+ ++|+|||+|+||+|||+++++++|.++ +++||||||+.++..|.++ +++++.+
T Consensus 1 ~n~~~K~~IA~~A~------~~I~~~~~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~vi~~ 68 (161)
T PF00455_consen 1 ENAEEKRAIARKAA------SLIEDGDTIFLDSGTTTLELAKYLPDK------KNLTVVTNSLPIANELSENPNIEVILL 68 (161)
T ss_pred CCHHHHHHHHHHHH------HhCCCCCEEEEECchHHHHHHHHhhcC------CceEEEECCHHHHHHHHhcCceEEEEe
Confidence 47899999999999 999999999999999999999999975 4899999999999999776 5777765
Q ss_pred CC-------------------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccC
Q 029161 99 RD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 159 (198)
Q Consensus 99 ~~-------------------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~ 159 (198)
++ .+++|++|+|++++|+ +.|+. .++.+|+.+++.++ ++|+++|+|+|+|||+.+
T Consensus 69 GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~gi~~-~~G~~----~~~~~~a~vk~~~~-~~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 69 GGEVNPKSLSFVGPIALEALRQFRFDKAFIGADGISE-EGGLT----TSDEEEAEVKRAMI-ENSKQVILLADSSKFGRN 142 (161)
T ss_pred CCEEEcCCCcEECchHHHHHHhhccceEEecccEecC-CCccc----cchHHHHHHHHHHH-HhcCeEEEEeChhhcCCe
Confidence 42 2589999999999999 55442 25668899996666 899999999999999753
No 10
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=99.93 E-value=5.2e-26 Score=195.71 Aligned_cols=152 Identities=15% Similarity=0.028 Sum_probs=119.0
Q ss_pred hHHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH-cC
Q 029161 14 SSRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AG 92 (198)
Q Consensus 14 ~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-~g 92 (198)
.+.|+.++.++|++||++|+ ++|+|||+||||+|||+++++++|.+. +++||||||+.++..|.. .+
T Consensus 68 ~~~r~~~~~~~K~~IA~~Aa------~lI~~g~tIflD~GtT~~~la~~L~~~------~~ltvvTnsl~i~~~l~~~~~ 135 (252)
T PRK10681 68 LSDQKSRLVEEKRRAAQLAA------TLVEPNQTLFFDCGTTTPWIIEAIDNE------LPFTAVCYSLNTFLALQEKPH 135 (252)
T ss_pred HHHHHHhCHHHHHHHHHHHH------hhcCCCCEEEEECCccHHHHHHhcCCC------CCeEEEECCHHHHHHHhhCCC
Confidence 35577888999999999999 999999999999999999999999763 379999999999998865 45
Q ss_pred CCEEEcCC-------------------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcC
Q 029161 93 IPLDQYRD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 153 (198)
Q Consensus 93 i~v~~l~~-------------------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~ 153 (198)
++++.+++ .+++|++|+||+|+|+ +.|+. .++.+|+.+++.++ ++|+++|+|+||
T Consensus 136 ~~villGG~~~~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~-~~G~~----~~~~~ea~vk~~~~-~~a~~~illaD~ 209 (252)
T PRK10681 136 CRAILCGGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHV-SKGAT----CFNLEELPVKHWAM-AMAQKHVLVVDH 209 (252)
T ss_pred CEEEEECcEEecCcceeeCHHHHHHHHhhCCCEEEEeCceecC-CCCcC----CCCHHHHHHHHHHH-HhhCcEEEEEcc
Confidence 78776542 2589999999999998 44431 25668899996666 789999999999
Q ss_pred CccccC-C---CC--cccEEEecCCH-HHHHHHHHhh
Q 029161 154 NQYKGV-L---DG--SVPVLVQPVNW-METAEEIDDL 183 (198)
Q Consensus 154 sK~~~~-l---g~--~ipvEV~p~~~-~~v~~~l~~l 183 (198)
|||+.. + +. .+..-|..... ....+.+.+.
T Consensus 210 sKf~~~~~~~~~~l~~id~lITD~~~~~~~~~~~~~~ 246 (252)
T PRK10681 210 SKFGKVRPARMGDLTRFDTVVSDRCPDDEFVKYAQAQ 246 (252)
T ss_pred cccCceeeeEeeCHHHCCEEEeCCCCCHHHHHHHHHc
Confidence 999974 2 21 24444544322 3455666664
No 11
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=99.93 E-value=8.5e-26 Score=194.69 Aligned_cols=127 Identities=9% Similarity=0.098 Sum_probs=108.1
Q ss_pred HHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH-cCC
Q 029161 15 SRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGI 93 (198)
Q Consensus 15 ~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-~gi 93 (198)
+.|...+.++|++||++|+ ++|+|||+|+||+|||+++++++|++. +++||||||+.++..+.. .++
T Consensus 68 ~~r~~~~~~~K~~IA~~Aa------~~I~~g~tIflD~GtT~~~la~~L~~~------~~ltVvTNsl~ia~~l~~~~~~ 135 (252)
T PRK10906 68 HDRKATQTEEKERIARKVA------SQIPNGATLFIDIGTTPEAVAHALLNH------SNLRIVTNNLNVANTLMAKEDF 135 (252)
T ss_pred HHHhhhcHHHHHHHHHHHH------hhCCCCCEEEEcCcHHHHHHHHHhcCC------CCcEEEECcHHHHHHHhhCCCC
Confidence 4577789999999999999 999999999999999999999999764 489999999999998864 557
Q ss_pred CEEEcCC-------------------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCC
Q 029161 94 PLDQYRD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSEN 154 (198)
Q Consensus 94 ~v~~l~~-------------------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~s 154 (198)
+++.+++ .+++|++|+||+|||+ ++|+. .++.+|+.++++|+ ++|+++|+|+|+|
T Consensus 136 ~villGG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~-~~G~t----~~~~~ea~~k~~~~-~~a~~~illaD~s 209 (252)
T PRK10906 136 RIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDS-DGSLL----EFDYHEVRTKRAII-ENSRHVMLVVDHS 209 (252)
T ss_pred EEEEECCEEecCCCccCCHHHHHHHHhccCCEEEEcCCEECC-CCCcC----CCCHHHHHHHHHHH-HhcCcEEEEEccc
Confidence 8777542 2589999999999998 45431 25668899996666 7899999999999
Q ss_pred ccccC
Q 029161 155 QYKGV 159 (198)
Q Consensus 155 K~~~~ 159 (198)
||+.+
T Consensus 210 Kf~~~ 214 (252)
T PRK10906 210 KFGRN 214 (252)
T ss_pred hhCCc
Confidence 99975
No 12
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=99.93 E-value=1.4e-25 Score=195.02 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=122.1
Q ss_pred chHHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH-c
Q 029161 13 DSSRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-A 91 (198)
Q Consensus 13 ~~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-~ 91 (198)
..+.++..+.++|++||++|+ ++|+|||+||||+|||+++++++|.++ +++||||||+.++..+.. .
T Consensus 81 ~~~~r~~~~~~~K~~IA~~Aa------~~I~dgd~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~ 148 (269)
T PRK09802 81 SVEDKSALNTAMKRSVAKAAV------ELIQPGHRVILDSGTTTFEIARLMRKH------TDVIAMTNGMNVANALLEAE 148 (269)
T ss_pred CHHHHHHhCHHHHHHHHHHHH------hhCCCCCEEEECCchHHHHHHHhcCcC------CCeEEEeCCHHHHHHHHhCC
Confidence 345577889999999999999 999999999999999999999999764 379999999999998864 4
Q ss_pred CCCEEEcCC-------------------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEc
Q 029161 92 GIPLDQYRD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVS 152 (198)
Q Consensus 92 gi~v~~l~~-------------------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD 152 (198)
+++++.+++ .+++|++|+||+|+|. +.|+. .++.+|+.++++|+ ++|+++|+|+|
T Consensus 149 ~~~v~llGG~~~~~~~~~~G~~a~~~l~~~~~d~afig~~gi~~-~~G~t----~~~~~ea~~kr~~i-~~s~~~ill~D 222 (269)
T PRK09802 149 GVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDL-ERGVS----THNEDEARLNRRMC-EVAERIIVVTD 222 (269)
T ss_pred CCEEEEECCEEecCCCceECHHHHHHHHhccCCEEEEcCceecC-CCCcC----CCCHHHHHHHHHHH-HHcCcEEEEEe
Confidence 678877542 2589999999999998 45432 25668899996666 89999999999
Q ss_pred CCccccC-CCC-----cccEEEecCCH-HHHHHHHHhhcCCCc
Q 029161 153 ENQYKGV-LDG-----SVPVLVQPVNW-METAEEIDDLFIGDA 188 (198)
Q Consensus 153 ~sK~~~~-lg~-----~ipvEV~p~~~-~~v~~~l~~lf~g~~ 188 (198)
|+||+.. +.. .+-.-|..... ....+.+.+. |..
T Consensus 223 ~sKf~~~~~~~~~~l~~id~iITD~~~~~~~~~~~~~~--~~~ 263 (269)
T PRK09802 223 SSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKA--GVE 263 (269)
T ss_pred ccccCCcceEEecCHHHCCEEEECcCCCHHHHHHHHHC--CCE
Confidence 9999974 322 24444444332 3466667775 544
No 13
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=99.92 E-value=4.7e-25 Score=188.88 Aligned_cols=127 Identities=12% Similarity=0.124 Sum_probs=107.1
Q ss_pred hHHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH-cC
Q 029161 14 SSRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AG 92 (198)
Q Consensus 14 ~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-~g 92 (198)
-+.|+.++.++|++||++|+ ++|+|||+|+||+|||+.+++++|++ +++||||||+.++..|.. .+
T Consensus 69 ~~~r~~~~~~~K~~IA~~Aa------~lI~~gd~Ifld~GtT~~~l~~~L~~-------~~ltVvTNs~~ia~~l~~~~~ 135 (240)
T PRK10411 69 FHIRLKSHYAHKADIAREAL------AWIEEGMVIALDASSTCWYLARQLPD-------INIQVFTNSHPICQELGKRER 135 (240)
T ss_pred HHHHHHhHHHHHHHHHHHHH------HhCCCCCEEEEcCcHHHHHHHHhhCC-------CCeEEEeCCHHHHHHHhcCCC
Confidence 35577889999999999999 99999999999999999999999975 379999999999998864 56
Q ss_pred CCEEEcCC-------------------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcC
Q 029161 93 IPLDQYRD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 153 (198)
Q Consensus 93 i~v~~l~~-------------------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~ 153 (198)
++++.+++ .+++|++|+||+|+|. ++|+. .++.+|+.+++.++ ++|+++|+|+||
T Consensus 136 ~~vil~GG~~~~~~~~~~G~~a~~~l~~~~~d~afis~~gi~~-~~G~~----~~~~~ea~~k~~~~-~~a~~~ill~D~ 209 (240)
T PRK10411 136 IQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDS-SGALW----DSNAINADYKSMLL-KRAAQSLLLIDK 209 (240)
T ss_pred CEEEEECCEEeCCCCceECHHHHHHHHhcCCCEEEEeceeECC-CCCcc----cCCHHHHHHHHHHH-HHhCcEEEEEec
Confidence 78776542 2589999999999998 45432 25668899995555 899999999999
Q ss_pred CccccC
Q 029161 154 NQYKGV 159 (198)
Q Consensus 154 sK~~~~ 159 (198)
|||+..
T Consensus 210 sKf~~~ 215 (240)
T PRK10411 210 SKFNRS 215 (240)
T ss_pred cccCCc
Confidence 999763
No 14
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=99.92 E-value=8.4e-25 Score=188.60 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=107.3
Q ss_pred HHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH-cCC
Q 029161 15 SRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGI 93 (198)
Q Consensus 15 ~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-~gi 93 (198)
+.+...+.++|++||++|+ ++|+|||+|+||+|||++++|++|.+. +++||||||+.++..|.. .++
T Consensus 68 ~~r~~~~~~eK~~IA~~Aa------~lI~~g~~ifld~GTT~~~la~~L~~~------~~ltviTNsl~ia~~l~~~~~~ 135 (253)
T COG1349 68 SERKALNTEEKRAIAKAAA------TLIEDGDTIFLDAGTTTLALARALPDD------NNLTVITNSLNIAAALLEKPNI 135 (253)
T ss_pred HHHHHhhHHHHHHHHHHHH------hhCCCCCEEEECCCcHHHHHHHHhCcC------CCeEEEeCCHHHHHHHHhCCCC
Confidence 4577789999999999999 999999999999999999999999874 359999999999998854 457
Q ss_pred CEEEcCC-------------------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCC
Q 029161 94 PLDQYRD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSEN 154 (198)
Q Consensus 94 ~v~~l~~-------------------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~s 154 (198)
.++.+++ .+++|++|+|++|+|. +.|+. .++.+|+.+++.|+ ++|+++|+|+|||
T Consensus 136 ~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~-~~g~~----~~~~~ea~~k~~~~-~~a~~~~ll~D~s 209 (253)
T COG1349 136 EVILLGGTVRKKSGSFVGPLAEEFLRQFNFDKAFIGADGIDL-EGGLT----TFNEEEAEVKRAMI-EAAREVILLADSS 209 (253)
T ss_pred eEEEeCcEEEcCCCeEEcHHHHHHHHhCcccEEEEeccccCC-CCCcC----cCCHHHHHHHHHHH-HhhCcEEEEEcCC
Confidence 7766542 2589999999999998 55442 25668888985555 8999999999999
Q ss_pred ccccC
Q 029161 155 QYKGV 159 (198)
Q Consensus 155 K~~~~ 159 (198)
||++.
T Consensus 210 Kf~~~ 214 (253)
T COG1349 210 KFGRV 214 (253)
T ss_pred ccCCc
Confidence 99985
No 15
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=99.92 E-value=1.3e-24 Score=187.04 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=115.9
Q ss_pred HHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH-cCC
Q 029161 15 SRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGI 93 (198)
Q Consensus 15 ~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-~gi 93 (198)
+.|...+.++|++||++|+ ++|+|||+|+||+|||+++++++|.+ +++||||||+.++..|.. .++
T Consensus 70 ~~r~~~~~~~K~~IA~~Aa------~~I~~g~~Ifld~GsT~~~la~~L~~-------~~ltVvTnsl~ia~~l~~~~~~ 136 (251)
T PRK13509 70 NIHQAQNHDEKVRIAKAAS------QLCNPGESVVINCGSTAFLLGRELCG-------KPVQIITNYLPLANYLIDQEHD 136 (251)
T ss_pred HHHHHhCHHHHHHHHHHHH------HhCCCCCEEEECCcHHHHHHHHHhCC-------CCeEEEeCCHHHHHHHHhCCCC
Confidence 4567788999999999999 99999999999999999999999975 379999999999998864 457
Q ss_pred CEEEcCC------------------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCc
Q 029161 94 PLDQYRD------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQ 155 (198)
Q Consensus 94 ~v~~l~~------------------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK 155 (198)
+++.+++ .+++|++|+||+|+|. + |+ ..++.+|+.++++++ ++|+++|+|+||||
T Consensus 137 ~v~l~GG~~~~~~~~~~G~~~~~l~~~~~d~aFig~~gi~~-~-G~----~~~~~~e~~~k~~~~-~~s~~~illaDssK 209 (251)
T PRK13509 137 SVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTA-D-GL----YKTDMLTAMAEQKML-SVVGKLVVLVDSSK 209 (251)
T ss_pred EEEEECCeEcCCcceeECHHHHHHHhCcCCEEEECCCcCCC-C-cC----CCCCHHHHHHHHHHH-HHhCcEEEEEcccc
Confidence 7776542 2589999999999997 3 32 125567899996666 89999999999999
Q ss_pred cccC-CCC-----cccEEEecCCH-HHHHHHHHhh
Q 029161 156 YKGV-LDG-----SVPVLVQPVNW-METAEEIDDL 183 (198)
Q Consensus 156 ~~~~-lg~-----~ipvEV~p~~~-~~v~~~l~~l 183 (198)
|+.. +.. .+..-|..... +...+.+.+.
T Consensus 210 fg~~~~~~~~~l~~id~iITD~~~~~~~~~~~~~~ 244 (251)
T PRK13509 210 IGERAGMLFSRADQIDMLITGKNADPEVLQQLEAQ 244 (251)
T ss_pred cCceeeEEecCHHHCCEEEeCcCCCHHHHHHHHHC
Confidence 9974 322 24444443322 3455666664
No 16
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=99.92 E-value=1.5e-24 Score=187.10 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=115.4
Q ss_pred hHHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH-cC
Q 029161 14 SSRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AG 92 (198)
Q Consensus 14 ~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-~g 92 (198)
-+.|..++.++|++||++|+ .+|+|||+||||+|||+++++++|++. +++||||||+.++..|.. .+
T Consensus 67 ~~~r~~~~~~~K~~IA~~Aa------~~I~~g~tIfld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~ 134 (256)
T PRK10434 67 IDHKTLINTHKKELIAEAAV------SLIHDGDSIILDAGSTVLQMVPLLSRF------NNITVMTNSLHIVNALSELDN 134 (256)
T ss_pred HHHHHHhhHHHHHHHHHHHH------hhCCCCCEEEEcCcHHHHHHHHHhccC------CCeEEEECCHHHHHHHhhCCC
Confidence 34577788999999999999 999999999999999999999999864 379999999999998865 44
Q ss_pred -CCEEEcCC-------------------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEc
Q 029161 93 -IPLDQYRD-------------------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVS 152 (198)
Q Consensus 93 -i~v~~l~~-------------------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD 152 (198)
++++.+++ .+++|++|+||+|+|. +.|+. ...+++.+++ .|+++|+++|+|+|
T Consensus 135 ~~~v~l~GG~~~~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~-~~G~t-----~~~~~~~~k~-~~~~~a~~~illaD 207 (256)
T PRK10434 135 EQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFIGTDGIDL-NAGVT-----TFNEVYTVSK-AMCNAAREIILMAD 207 (256)
T ss_pred CCEEEEECCEEeCCCCeEECHHHHHHHHhCcCCEEEEcCceecC-CCCcC-----CCCHHHHHHH-HHHHHcCcEEEEEC
Confidence 67776542 2589999999999998 45431 2224577885 55589999999999
Q ss_pred CCccccC-CCC-----cccEEEecCCH-HHHHHHHHhh
Q 029161 153 ENQYKGV-LDG-----SVPVLVQPVNW-METAEEIDDL 183 (198)
Q Consensus 153 ~sK~~~~-lg~-----~ipvEV~p~~~-~~v~~~l~~l 183 (198)
|+||+.. +.. .+-.-|..... ..+.+.+.+.
T Consensus 208 ~sKf~~~~~~~~~~~~~id~lITD~~~~~~~~~~l~~~ 245 (256)
T PRK10434 208 SSKFGRKSPNVVCSLEKVDKLITDAGIDPAFRQALEEK 245 (256)
T ss_pred CcccCCceeEEEecHHHCCEEEECcCCCHHHHHHHHHC
Confidence 9999975 321 13344433322 3456667765
No 17
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=98.22 E-value=1.9e-05 Score=70.34 Aligned_cols=130 Identities=14% Similarity=0.034 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcc---------hhHHHHHHHHHHHhhcCCCCCeEEE-cC-------cHHH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSG---------QASAMAIEYMGRQLRAGALKDVIGI-PT-------SVAS 84 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsG---------ST~~~la~~L~~~~~~~~l~~itvV-Tn-------S~~~ 84 (198)
.+..++||+.|+ ++|++|++|.--+. +|+..+++...+. | ++++|+ +- +-.+
T Consensus 102 ~~~~~~Ia~~a~------~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~---g--~~~~V~v~EsrP~~~G~~~~ 170 (303)
T TIGR00524 102 LETNRKIGENGA------KLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWED---G--KRIRVIACETRPRNQGSRLT 170 (303)
T ss_pred HHHHHHHHHHHH------HHccCCCEEEEecCCccccccCcchHHHHHHHHHHc---C--CceEEEECCCCCccchHHHH
Confidence 345578999999 99999998777443 5787777766543 1 234333 22 1456
Q ss_pred HHHHHHcCCCEEEcCC--------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEEEEEcCCc
Q 029161 85 ANEAAVAGIPLDQYRD--------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQ 155 (198)
Q Consensus 85 a~~l~~~gi~v~~l~~--------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~ivlaD~sK 155 (198)
+.+|.+.|+++..+.+ ...+|+.|+|||.|-. +++++---|+ ..+ .+++ .....||+++.+.|
T Consensus 171 a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~-nG~v~nk~GT-----~~l--A~~Ak~~~vPv~V~a~s~K 242 (303)
T TIGR00524 171 AWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIAR-NGDVANKIGT-----YQL--AVLAKEFRIPFFVAAPLST 242 (303)
T ss_pred HHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEec-CCCEeEhhhH-----HHH--HHHHHHhCCCEEEeccccc
Confidence 7888899999876532 1269999999999998 7776543443 222 2222 34568999999999
Q ss_pred cccC--CCCcccEEEec
Q 029161 156 YKGV--LDGSVPVLVQP 170 (198)
Q Consensus 156 ~~~~--lg~~ipvEV~p 170 (198)
|... .|..+|+|-.+
T Consensus 243 ~~~~~~~g~~i~~e~~~ 259 (303)
T TIGR00524 243 FDTKTSCGEDIVIEERD 259 (303)
T ss_pred ccCCCCCccccccccCC
Confidence 9975 35678777654
No 18
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=98.19 E-value=4e-05 Score=67.47 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=91.0
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEE-cC------cHHHHHHHHH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGI-PT------SVASANEAAV 90 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvV-Tn------S~~~a~~l~~ 90 (198)
.+..+.+++|++.++ ++|++|++|.- +.++|+..+++...+. | ++++|+ +- ....+.+|.+
T Consensus 90 ~~~~~~~~~I~~~a~------~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~eL~~ 158 (275)
T PRK08335 90 RLMEEAKREIGNIGS------ELIDDGDVIITHSFSSAVLEILKTAKRK---G--KRFKVILTESAPDYEGLALANELEF 158 (275)
T ss_pred HHHHHHHHHHHHHHH------HHcCCCCEEEEECCcHHHHHHHHHHHHc---C--CceEEEEecCCCchhHHHHHHHHHH
Confidence 345567888999999 99999997766 5567888887776643 2 234443 21 2455778888
Q ss_pred cCCCEEEcCCC------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-Cc
Q 029161 91 AGIPLDQYRDT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GS 163 (198)
Q Consensus 91 ~gi~v~~l~~~------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ 163 (198)
.|+++..+.+. .++|+++.|||.|-. ++++.---|+ ..+- -+.-....-||++++++||...+. ..
T Consensus 159 ~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~-nG~v~NKiGT-----~~lA-~~Ak~~~vPfyV~a~~~k~~~~~~~~~ 231 (275)
T PRK08335 159 LGIEFEVITDAQLGLFAKEATLALVGADNVTR-DGYVVNKAGT-----YLLA-LACHDNGVPFYVAAETFKFHPELKSEE 231 (275)
T ss_pred CCCCEEEEeccHHHHHHHhCCEEEECccEEec-CCCEeehhhH-----HHHH-HHHHHcCCCEEEECccceecccCCCCC
Confidence 99998776432 269999999999988 6765433333 2221 111234568999999999998753 36
Q ss_pred ccEEEec
Q 029161 164 VPVLVQP 170 (198)
Q Consensus 164 ipvEV~p 170 (198)
+|+|-.+
T Consensus 232 i~ieer~ 238 (275)
T PRK08335 232 VELVERP 238 (275)
T ss_pred ccccccC
Confidence 7765543
No 19
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=4.2e-05 Score=68.06 Aligned_cols=122 Identities=16% Similarity=0.075 Sum_probs=89.7
Q ss_pred cCHHHHHHHHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEE-EcCc------HHHHHHHHHc
Q 029161 20 NGSSVLFRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIG-IPTS------VASANEAAVA 91 (198)
Q Consensus 20 ~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~ 91 (198)
+....+++||..++ ++|+||++|.- +.++|+..+++.-.++. ++++| ||-| ...+..|++.
T Consensus 101 ~~~~a~~~ia~~~a------~~i~dg~~IlTh~~S~~v~~~l~~A~~~~-----k~~~V~VtESRP~~eG~~~ak~L~~~ 169 (301)
T COG1184 101 RVEKAKERIAEIGA------ERIHDGDVILTHSFSKTVLEVLKTAADRG-----KRFKVIVTESRPRGEGRIMAKELRQS 169 (301)
T ss_pred HHHHHHHHHHHHHH------hhccCCCEEEEecCcHHHHHHHHHhhhcC-----CceEEEEEcCCCcchHHHHHHHHHHc
Confidence 44567888999999 99999998765 88899999888877652 23444 4544 4567788999
Q ss_pred CCCEEEcCCC------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccC
Q 029161 92 GIPLDQYRDT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 159 (198)
Q Consensus 92 gi~v~~l~~~------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~ 159 (198)
|++++.+-+. ..+|++|.|+|+|.. +++++-=-|+ ..+- -.......-|++++.+-||++.
T Consensus 170 gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~-nG~lvnkiGT-----~~lA-~~A~e~~~Pf~v~aesyKf~p~ 236 (301)
T COG1184 170 GIPVTVIVDSAVGAFMSRVDKVLVGADAILA-NGALVNKIGT-----SPLA-LAARELRVPFYVVAESYKFVPK 236 (301)
T ss_pred CCceEEEechHHHHHHHhCCEEEECccceec-CCcEEeccch-----HHHH-HHHHHhCCCEEEEeeeeccccc
Confidence 9998776431 269999999999999 7877654554 3332 1112344679999999999984
No 20
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=98.14 E-value=4.6e-05 Score=67.68 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEE-cCc------HHHHHHHHHcCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGI-PTS------VASANEAAVAGI 93 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvV-TnS------~~~a~~l~~~gi 93 (198)
....++|++.|+ ++|++|++|.- +.++|+..+++...+. | ++++|+ +-| ..++..|.+.|+
T Consensus 99 ~~a~~~I~~~a~------~~i~~g~~ILT~~~S~tv~~~l~~a~~~---~--~~f~V~v~EsrP~~~G~~~a~~L~~~gI 167 (301)
T TIGR00511 99 DKAQERIGEIGA------KRIRDGDVVMTHCNSEAALSVIKTAFEQ---G--KDIEVIATETRPRKQGHITAKELRDYGI 167 (301)
T ss_pred HHHHHHHHHHHH------HHcCCCCEEEEECCcHHHHHHHHHHHHc---C--CcEEEEEecCCCcchHHHHHHHHHHCCC
Confidence 456778999999 99999997776 6577888887776543 1 233333 222 456888889999
Q ss_pred CEEEcCCC------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccC--CCCccc
Q 029161 94 PLDQYRDT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV--LDGSVP 165 (198)
Q Consensus 94 ~v~~l~~~------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~--lg~~ip 165 (198)
++..+.+. .++|++|+|||.|-. +++++---|+ ..+- -+.-....-+|+++++.||... +|..++
T Consensus 168 ~vtlI~Dsa~~~~m~~vd~VivGad~v~~-nG~v~nkiGT-----~~lA-~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ 240 (301)
T TIGR00511 168 PVTLIVDSAVRYFMKEVDHVVVGADAITA-NGALINKIGT-----SQLA-LAAREARVPFMVAAETYKFHPKTITGELVE 240 (301)
T ss_pred CEEEEehhHHHHHHHhCCEEEECccEEec-CCCEEEHHhH-----HHHH-HHHHHhCCCEEEEcccceecCCCCCCCccc
Confidence 98765432 369999999999998 7776543444 2221 1222345789999999999975 355566
Q ss_pred EEEec
Q 029161 166 VLVQP 170 (198)
Q Consensus 166 vEV~p 170 (198)
+|-.+
T Consensus 241 ie~~~ 245 (301)
T TIGR00511 241 IEERD 245 (301)
T ss_pred ccccC
Confidence 66544
No 21
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=98.13 E-value=2.9e-05 Score=69.20 Aligned_cols=131 Identities=19% Similarity=0.147 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEE-cCc------HHHHHHHHHcCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGI-PTS------VASANEAAVAGI 93 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvV-TnS------~~~a~~l~~~gi 93 (198)
....++|++.|+ ++|++|++|.- +.++|+..+++...+.. ++++|+ +-| ..++..|.+.|+
T Consensus 104 ~~~~~~I~~~a~------~~i~~g~~ILT~~~S~tv~~~l~~A~~~~-----k~~~V~v~EsrP~~~G~~~a~~L~~~GI 172 (310)
T PRK08535 104 ENAVEKIGEIGA------KRIRDGDVIMTHCNSSAALSVIKTAHEQG-----KDIEVIATETRPRNQGHITAKELAEYGI 172 (310)
T ss_pred HHHHHHHHHHHH------HHcCCCCEEEEeCCcHHHHHHHHHHHHCC-----CeEEEEEecCCchhhHHHHHHHHHHCCC
Confidence 345677999999 99999998776 65778888877665431 234433 322 347788889999
Q ss_pred CEEEcCCC------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccC--CCCccc
Q 029161 94 PLDQYRDT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV--LDGSVP 165 (198)
Q Consensus 94 ~v~~l~~~------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~--lg~~ip 165 (198)
++..+.+. .++|++|+|||.|-. +++++---|+ ..+- -+.-....-||++++..||... +|..+|
T Consensus 173 ~vtlI~Dsav~~~m~~vd~VivGAd~v~~-nG~v~nkiGT-----~~~A-~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ 245 (310)
T PRK08535 173 PVTLIVDSAVRYFMKDVDKVVVGADAITA-NGAVINKIGT-----SQIA-LAAHEARVPFMVAAETYKFSPKTLLGELVE 245 (310)
T ss_pred CEEEEehhHHHHHHHhCCEEEECccEEec-CCCEEeHHhH-----HHHH-HHHHHhCCCEEEecccceecCCCCCCCcce
Confidence 98765432 369999999999988 6766543333 2221 1222345789999999999975 355566
Q ss_pred EEEec
Q 029161 166 VLVQP 170 (198)
Q Consensus 166 vEV~p 170 (198)
+|-.+
T Consensus 246 ie~~~ 250 (310)
T PRK08535 246 IEERD 250 (310)
T ss_pred ecccC
Confidence 65443
No 22
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=98.10 E-value=5.1e-05 Score=68.43 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhccccccccCCCCC----EEEEC--cc-------hhHHHHHHHHHHHhhcCCCCCeEEEcC-c------
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGM----VVGLG--SG-------QASAMAIEYMGRQLRAGALKDVIGIPT-S------ 81 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~----~IgLg--sG-------ST~~~la~~L~~~~~~~~l~~itvVTn-S------ 81 (198)
.+..++|++.++ ++|++|+ +|.-- +| +|+..+++...++ | ++++|+-. |
T Consensus 126 ~~~~~~I~~~g~------~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~---g--~~~~V~v~EsrP~~qG 194 (331)
T TIGR00512 126 LEDNRAIGENGA------ALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEK---G--RLEHVYADETRPRLQG 194 (331)
T ss_pred HHHHHHHHHHHH------HHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHc---C--CceEEEECCCCchhhH
Confidence 345667999999 9999999 87772 33 3777777766543 2 23444332 2
Q ss_pred H-HHHHHHHHcCCCEEEcCC--------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHH-HHhcCcEEEEE
Q 029161 82 V-ASANEAAVAGIPLDQYRD--------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSV-LNAADKLVFMV 151 (198)
Q Consensus 82 ~-~~a~~l~~~gi~v~~l~~--------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i-~~~s~~~ivla 151 (198)
. .++.+|.+.|+++..+.+ ..++|+.+.|||.|-. +++++---|+ ..+ .++ -....-||+++
T Consensus 195 ~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~-nG~v~nkiGT-----~~l--A~~Ak~~~vPfyV~a 266 (331)
T TIGR00512 195 ARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAA-NGDTANKIGT-----YQL--AVLAKHHGVPFYVAA 266 (331)
T ss_pred HHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEec-CCCEeehhhH-----HHH--HHHHHHhCCCEEEec
Confidence 1 346778899999876543 1269999999999998 6766543433 222 222 23456899999
Q ss_pred cCCccccCC--CCcccEEEec
Q 029161 152 SENQYKGVL--DGSVPVLVQP 170 (198)
Q Consensus 152 D~sK~~~~l--g~~ipvEV~p 170 (198)
+.+||.... |..+|+|-.+
T Consensus 267 ~~~kfd~~~~~~~~i~iE~r~ 287 (331)
T TIGR00512 267 PTSTIDLETKDGAEIPIEERP 287 (331)
T ss_pred cccccccCCCCccccccccCC
Confidence 999998753 4568887765
No 23
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=97.93 E-value=0.00017 Score=65.46 Aligned_cols=130 Identities=16% Similarity=0.097 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEEC--cch-------hHHHHHHHHHHHhhcCCCCCeEEEcCc-------H-HHH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLG--SGQ-------ASAMAIEYMGRQLRAGALKDVIGIPTS-------V-ASA 85 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg--sGS-------T~~~la~~L~~~~~~~~l~~itvVTnS-------~-~~a 85 (198)
+..++|++.++ ++|++|++|.-- ||+ |+..+++...++ | ++++|+-.- . .++
T Consensus 131 ~~~~~I~~~g~------~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~---g--k~~~V~v~EsRP~~qG~~lta 199 (344)
T PRK05720 131 EINRAIGEHGL------TLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEK---G--IDIHVYADETRPRLQGARLTA 199 (344)
T ss_pred HHHHHHHHHHH------HHccCCCEEEEecCCCcceecchhHHHHHHHHHHHc---C--CceEEEEcCCCChhhhHHHHH
Confidence 35567999999 999999987752 443 566676666543 1 234444322 2 347
Q ss_pred HHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccc
Q 029161 86 NEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYK 157 (198)
Q Consensus 86 ~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~ 157 (198)
.+|.+.|+++..+.+. ..+|+.|+|||.|-. ++++.-=-|+ ..+- -+.-....-|||++..+||.
T Consensus 200 ~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~-nG~v~NkiGT-----~~lA-l~Ak~~~vPfyV~a~~~kfd 272 (344)
T PRK05720 200 WELYQAGIDVTVITDNMAAHLMQTGKIDAVIVGADRIAA-NGDVANKIGT-----YQLA-IAAKYHGVPFYVAAPSSTID 272 (344)
T ss_pred HHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEec-CCCEeehhhH-----HHHH-HHHHHhCCCEEEeccccccC
Confidence 7888899998765431 259999999999988 6765543333 2221 22224456899999999998
Q ss_pred cCC--CCcccEEEec
Q 029161 158 GVL--DGSVPVLVQP 170 (198)
Q Consensus 158 ~~l--g~~ipvEV~p 170 (198)
... |..+|+|--+
T Consensus 273 ~~~~~g~~i~iE~r~ 287 (344)
T PRK05720 273 LTLADGKEIPIEERD 287 (344)
T ss_pred cCCCCCcccccccCC
Confidence 753 5678877655
No 24
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=97.77 E-value=0.00018 Score=62.36 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEE-cCc------HHHHHHHHHcC
Q 029161 21 GSSVLFRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGI-PTS------VASANEAAVAG 92 (198)
Q Consensus 21 ~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvV-TnS------~~~a~~l~~~g 92 (198)
-....+.|+..+. ++|++|++|.. |-++|+..+.....+. | +++.|+ +-| ...|..|.+.|
T Consensus 90 ~~~~~~~I~~~~~------~~I~~~~~ILT~~~S~~v~~~l~~a~~~---~--~~~~V~v~es~P~~eG~~~a~~L~~~g 158 (282)
T PF01008_consen 90 IEQAREKIADHAS------ELINDGDTILTHGYSSTVERFLLSAKKK---G--KKFRVIVLESRPYNEGRLMAKELAEAG 158 (282)
T ss_dssp HHHHHHHHHHHHH------CCC-TTEEEEEES--SHHHHHHHHHHHT---T--EEEEEEEE--TTTTHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHH------HhccCCeEEEEeCCchHHHHHHHHHHHc---C--CeEEEEEccCCcchhhhhHHHHhhhcc
Confidence 3446677999999 99999998766 8888888887775442 1 233333 333 25677888899
Q ss_pred CCEEEcCCC------Cc-ccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEEEEEcCCccccCC
Q 029161 93 IPLDQYRDT------SQ-IDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQYKGVL 160 (198)
Q Consensus 93 i~v~~l~~~------~~-iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~ivlaD~sK~~~~l 160 (198)
+++..+... .+ +|++++|||.|-. +++++---|+ ..+ .+.+ ....-+|+++++.||.+..
T Consensus 159 i~v~~i~d~~~~~~m~~~vd~VliGad~v~~-nG~v~nk~Gt-----~~~--a~~Ak~~~vPv~v~~~~~K~~~~~ 226 (282)
T PF01008_consen 159 IPVTLIPDSAVGYVMPRDVDKVLIGADAVLA-NGGVVNKVGT-----LQL--ALAAKEFNVPVYVLAESYKFSPRY 226 (282)
T ss_dssp -EEEEE-GGGHHHHHHCTESEEEEE-SEEET-TS-EEEETTH-----HHH--HHHHHHTT-EEEEE--GGGBETTC
T ss_pred eeEEEEechHHHHHHHHhCCeeEEeeeEEec-CCCEeehhhH-----HHH--HHHHHhhCCCEEEEcccccccccc
Confidence 987765432 36 9999999999999 7876654444 222 2222 3346899999999998863
No 25
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00041 Score=60.89 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=87.3
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchh-HHHHHHHHHHHhhcCCCCCeEEEcC-------cHHHHHHHHHcCCCE
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQA-SAMAIEYMGRQLRAGALKDVIGIPT-------SVASANEAAVAGIPL 95 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST-~~~la~~L~~~~~~~~l~~itvVTn-------S~~~a~~l~~~gi~v 95 (198)
....||..+- .+|.||++|..-+=|- +.++...-++. + +...|+-+ .-..+.+|.+.|||+
T Consensus 116 sR~~IA~l~~------~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~---~--~~F~V~vTEsrPd~sG~lm~~~L~~~~IPv 184 (313)
T KOG1466|consen 116 SRQKIAMLAQ------DFITDGCTILTHGYSRVVLEVLLTAAQN---K--KRFRVYVTESRPDGSGKLMAKELKKLGIPV 184 (313)
T ss_pred HHHHHHHHhh------hHhhCCCEEEEcchhHHHHHHHHHHHhc---C--ceEEEEEecCCCCCchhHHHHHHHhcCCCe
Confidence 4556899999 9999999999865544 44443333332 1 34555544 567788899999998
Q ss_pred EEcCC------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhc-CcEEEEEcCCccccCC--C-Cccc
Q 029161 96 DQYRD------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAA-DKLVFMVSENQYKGVL--D-GSVP 165 (198)
Q Consensus 96 ~~l~~------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s-~~~ivlaD~sK~~~~l--g-~~ip 165 (198)
..+-+ ..++|+.|.||+||-+ ++|+|---|+ -.+ .++++.. +-+|++|.+-||++-+ . ..+|
T Consensus 185 tlvlDSaVgyvMe~vD~VlVGAEGVvE-sGGIIN~iGT-----yq~--~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp 256 (313)
T KOG1466|consen 185 TLVLDSAVGYVMERVDLVLVGAEGVVE-SGGIINKIGT-----YQV--AVCAKSMNKPFYVVAESHKFVRLFPLNQKDLP 256 (313)
T ss_pred EEEehhhHHHHHhhccEEEEccceeee-cCceeeeccc-----chh--hhhHHhcCCCeEEEeeccceeeeccCcccccc
Confidence 76432 1379999999999998 7887765444 111 2333333 5799999999999854 3 4566
Q ss_pred EEEecC
Q 029161 166 VLVQPV 171 (198)
Q Consensus 166 vEV~p~ 171 (198)
-+--|+
T Consensus 257 ~~~~p~ 262 (313)
T KOG1466|consen 257 PALPPF 262 (313)
T ss_pred cccCCc
Confidence 664443
No 26
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.66 E-value=0.001 Score=60.00 Aligned_cols=128 Identities=15% Similarity=0.104 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEEC--cch-------hHHHHHHHHHHHhhcCCCCCeEEEcCc-------HH-HH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLG--SGQ-------ASAMAIEYMGRQLRAGALKDVIGIPTS-------VA-SA 85 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg--sGS-------T~~~la~~L~~~~~~~~l~~itvVTnS-------~~-~a 85 (198)
+.-++|++.++ ++|++|++|.-- +|+ |+..+++...+. | ++++|+-.. .. ++
T Consensus 121 ~~~~~I~~~g~------~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~---g--k~f~V~v~EsRP~~qG~rlta 189 (329)
T PRK06371 121 GRSKKIGEYGN------ELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRN---G--KNIFVFVDETRPRLQGARLTA 189 (329)
T ss_pred HHHHHHHHHHH------HHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHc---C--CeeEEEECCCCCcchHHHHHH
Confidence 34467999999 999999987773 344 456666666543 1 245555332 22 56
Q ss_pred HHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEEEEEcCCcc
Q 029161 86 NEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQY 156 (198)
Q Consensus 86 ~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~ivlaD~sK~ 156 (198)
.+|.+.|+++..+.+. ..+|+.|.|||.|-. ++++.---|+ ..+ .+++ ...--||++|..++|
T Consensus 190 ~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~a-NG~v~NKiGT-----~~l--Al~Ak~~~VPfyV~a~~~t~ 261 (329)
T PRK06371 190 WELAQEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIAS-NGDFANKIGT-----YEK--AVLAKVNGIPFYVAAPGSTF 261 (329)
T ss_pred HHHHHCCCCEEEEcccHHHHHhhhcCCCEEEECccEEec-CCCEeehhhH-----HHH--HHHHHHcCCCEEEecccccc
Confidence 7888899998765321 259999999999988 6765543333 222 2232 334578999998888
Q ss_pred ccCC--CCcccEEEe
Q 029161 157 KGVL--DGSVPVLVQ 169 (198)
Q Consensus 157 ~~~l--g~~ipvEV~ 169 (198)
.... |..+|+|--
T Consensus 262 d~~~~~g~~i~iEer 276 (329)
T PRK06371 262 DFSIKSGDEIPIEER 276 (329)
T ss_pred CCCCCCcCccccccC
Confidence 6543 445777643
No 27
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.66 E-value=0.00086 Score=61.26 Aligned_cols=132 Identities=12% Similarity=0.042 Sum_probs=86.0
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEEC--cc--------hhHHHHHHHHHHHhhcCCCCCeEEEcCc-------
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLG--SG--------QASAMAIEYMGRQLRAGALKDVIGIPTS------- 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg--sG--------ST~~~la~~L~~~~~~~~l~~itvVTnS------- 81 (198)
.+..+..++|++.++ ++|++|++|.-- || .|+..+++...++ | ++++|+-.-
T Consensus 147 ~ed~~~~~~I~~~g~------~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~---g--k~f~V~v~EsRP~~qG 215 (363)
T PRK05772 147 EEEYDAEIQMGLYGL------EKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKAL---G--MSVSVIAPETRPWLQG 215 (363)
T ss_pred HHHHHHHHHHHHHHH------hhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHC---C--CeEEEEECCCCccchh
Confidence 344556778999999 999999987663 33 2556666655543 2 345555332
Q ss_pred -HHHHHHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHH-HHhcCcEEEEE
Q 029161 82 -VASANEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSV-LNAADKLVFMV 151 (198)
Q Consensus 82 -~~~a~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i-~~~s~~~ivla 151 (198)
-.++.+|.+.||++..+.+. ..+|++|.|||.|-. ++++.-=-|+ ..+ .++ -....-||++|
T Consensus 216 ~rlta~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~-NG~v~NKiGT-----y~l--A~~Ak~~~vPfyV~a 287 (363)
T PRK05772 216 SRLTVYELMEEGIKVTLITDTAVGLVMYKDMVNNVMVGADRILR-DGHVFNKIGT-----FKE--AVIAHELGIPFYALA 287 (363)
T ss_pred HHHHHHHHHHCCCCEEEEehhHHHHHHhhcCCCEEEECccEEec-CCCEeehhhh-----HHH--HHHHHHhCCCEEEEc
Confidence 13466788899998765421 259999999999988 6765432333 222 222 23446899999
Q ss_pred cCCccccCCC-CcccEEEe
Q 029161 152 SENQYKGVLD-GSVPVLVQ 169 (198)
Q Consensus 152 D~sK~~~~lg-~~ipvEV~ 169 (198)
+++||..... ..+|+|-.
T Consensus 288 p~~k~d~~~~~~~i~ieer 306 (363)
T PRK05772 288 PTSTFDLKSDVNDVKIEER 306 (363)
T ss_pred cccccCccccccccccccC
Confidence 9999997653 45666554
No 28
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.50 E-value=0.0019 Score=58.60 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEEC--cch-------hHHHHHHHHHHHhhcCCCCCeEEEcC-c------HH-HH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLG--SGQ-------ASAMAIEYMGRQLRAGALKDVIGIPT-S------VA-SA 85 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg--sGS-------T~~~la~~L~~~~~~~~l~~itvVTn-S------~~-~a 85 (198)
+..++|++.++ ++|++|++|.-- ||+ |+..+++...+. | ++++|+-. | .. ++
T Consensus 132 ~~~~~I~~~g~------~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta 200 (339)
T PRK06036 132 ARNKLIGKHGA------KLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQ---G--KEIKVIACETRPLNQGSRLTT 200 (339)
T ss_pred HHHHHHHHHHH------HHccCCCEEEEecCCccccccccchHHHHHHHHHHc---C--CceEEEEcCCCchhhHHHHHH
Confidence 34567889999 999999988774 443 666777766543 1 34555543 1 22 56
Q ss_pred HHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHH-HHhcCcEEEEEcCCcc
Q 029161 86 NEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSV-LNAADKLVFMVSENQY 156 (198)
Q Consensus 86 ~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i-~~~s~~~ivlaD~sK~ 156 (198)
.+|.+.||++..+.+. ..+|+.|.|||.|-. + |+.-=-|+ .. - .++ -....-||++|..+||
T Consensus 201 ~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~a-n-Gv~NKiGT-----~~-l-A~~Ak~~~vPfyV~ap~s~~ 271 (339)
T PRK06036 201 WELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITR-D-AVFNKIGT-----YT-H-SVLAKEHEIPFYVAAPLSTF 271 (339)
T ss_pred HHHHHcCCCEEEEehhHHHHHhccCCCCEEEECccchhh-c-CeehhhhH-----HH-H-HHHHHHhCCCEEEEeecCcc
Confidence 7888899998765321 249999999999988 6 43221222 11 1 222 2344689999999999
Q ss_pred ccCC-CCcccEEEe
Q 029161 157 KGVL-DGSVPVLVQ 169 (198)
Q Consensus 157 ~~~l-g~~ipvEV~ 169 (198)
.... ...+|+|--
T Consensus 272 d~~~~~g~i~iE~r 285 (339)
T PRK06036 272 DFEGWEGSVKIEER 285 (339)
T ss_pred CCCcCCCCcccccC
Confidence 7643 125666653
No 29
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=97.23 E-value=0.00022 Score=61.01 Aligned_cols=108 Identities=21% Similarity=0.231 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH-------------HHH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN-------------EAA 89 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~-------------~l~ 89 (198)
..+.+||++|+ ..++||+.|.||.| --...|.++++ ++.+.+.|-+... .+.
T Consensus 6 ~~~e~ia~r~A------~el~dG~~VnlGIG-lPtlvan~~~~--------~~~~~~~seng~Lg~g~~p~~~~~d~~li 70 (225)
T COG2057 6 TEREMIAKRAA------RELKDGDYVNLGIG-LPTLVANYAPE--------GMNVLLQSENGLLGVGPAPLPGEEDADLI 70 (225)
T ss_pred hhHHHHHHHHH------HhccCCCEEEecCC-chHHhHhhccc--------ccceEEecCceeEEecCCCCCCCCCcchh
Confidence 58899999999 99999999999999 44556667654 3334443333211 111
Q ss_pred HcC-CCEEE---------------cCCCCcccEEEeecCccCCCCcc---------eeecCCCCCcchhHHHHHHHHHhc
Q 029161 90 VAG-IPLDQ---------------YRDTSQIDFAFDDADIIEEGTLV---------AVIGRQQPKGDESIIQEKSVLNAA 144 (198)
Q Consensus 90 ~~g-i~v~~---------------l~~~~~iD~af~Gad~Vd~~~~~---------~ikG~g~~~~~ea~~~ek~i~~~s 144 (198)
+.| .++.. ++. .|+|++|+|+-.||. .++ .++|.|| |. -++ ..|
T Consensus 71 naG~~~vt~~pg~~~f~sa~sf~~irG-Ghidv~vLGa~QVd~-~Gnlanw~Ipgk~vpGmGG-----Am---dl~-~ga 139 (225)
T COG2057 71 NAGKQPVTALPGASVFDSADSFAMIRG-GHIDVAVLGAAQVDE-YGNLANWMIPGKMVPGMGG-----AM---DLV-TGA 139 (225)
T ss_pred hCCCceeEecCCceEEchHHHHHHHhC-CceEEEEecceeecc-cCceeeeeECCccccCCcc-----ch---hhh-cCC
Confidence 112 22221 122 489999999999997 553 3566666 43 233 467
Q ss_pred CcEEEEEcCCcc
Q 029161 145 DKLVFMVSENQY 156 (198)
Q Consensus 145 ~~~ivlaD~sK~ 156 (198)
+++|++-+|+|-
T Consensus 140 kkvii~m~H~~k 151 (225)
T COG2057 140 KKVIVVMEHTKK 151 (225)
T ss_pred cEEEEEeeeecc
Confidence 999999999875
No 30
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=97.13 E-value=0.012 Score=53.80 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEC-cc-------hhHHHHHHHHHHHhhcCCCCCeE-EEcC------cHHH-H
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLG-SG-------QASAMAIEYMGRQLRAGALKDVI-GIPT------SVAS-A 85 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg-sG-------ST~~~la~~L~~~~~~~~l~~it-vVTn------S~~~-a 85 (198)
.+..++|++.++ ++|++|+++--+ +| .|+..+++...+. | +.+. +|+- .... +
T Consensus 144 ~~~~~~Ig~~g~------~li~dg~ILTHcnaG~LAt~~~gTal~vi~~A~~~---g--k~~~V~v~EtRP~~qG~rlta 212 (356)
T PRK08334 144 VEANLRMGHYGA------EVLPEGNVLTHCNAGSLATVHLGTVGAVLRVMHKD---G--TLKLLWVDETRPVLQGARLSA 212 (356)
T ss_pred HHHHHHHHHHHH------hhcCCCCEEEecCcchhhhcccchHHHHHHHHHHc---C--CeEEEEECCCCchhhHHHHHH
Confidence 345778999999 999999943333 22 4677777777654 2 2444 3441 2223 5
Q ss_pred HHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHH-HHhcCcEEEEEcCCcc
Q 029161 86 NEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSV-LNAADKLVFMVSENQY 156 (198)
Q Consensus 86 ~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i-~~~s~~~ivlaD~sK~ 156 (198)
.+|.+.||++..+.+. ..+|+.|.|||.|-. ++++.-=-|+ ..+ .++ -....-|||+|..+|+
T Consensus 213 ~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~-nG~v~NKiGT-----y~l--A~~Ak~~~vPfyV~Ap~~t~ 284 (356)
T PRK08334 213 WEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIVA-NGDFANKIGT-----YTL--AVLAKEHGIPFFTVAPLSTI 284 (356)
T ss_pred HHHHHCCCCEEEEehhHHHHHhhhcCCCEEEECccEEec-CCCEeehhhH-----HHH--HHHHHHhCCCEEEEcccCcc
Confidence 6788899998765321 269999999999988 6765433333 222 222 2345689999999999
Q ss_pred ccCC--CCcccEEEec
Q 029161 157 KGVL--DGSVPVLVQP 170 (198)
Q Consensus 157 ~~~l--g~~ipvEV~p 170 (198)
.... |..+|+|--+
T Consensus 285 d~~~~~~~~i~iE~r~ 300 (356)
T PRK08334 285 DMSLKSGKEIPIEERS 300 (356)
T ss_pred CCCCCCCcccccccCC
Confidence 8654 4457776543
No 31
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=96.97 E-value=0.013 Score=51.25 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=73.8
Q ss_pred HHHHHHHHHhccccccccCCCCCEE-EECcchhHHHHHHHHHHHhhcCCCCCeEEEcC-----cHHHHHHHHHcCCCEEE
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVV-GLGSGQASAMAIEYMGRQLRAGALKDVIGIPT-----SVASANEAAVAGIPLDQ 97 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~I-gLgsGST~~~la~~L~~~~~~~~l~~itvVTn-----S~~~a~~l~~~gi~v~~ 97 (198)
+-+.|++.|+ ++|. |++| -+|+++|+..+...- ++ ...+.|+-+ ...++..|.+.|+++..
T Consensus 73 ~~~~~~~~A~------~~i~-~dvILT~s~S~~v~~~l~~~-~~-----~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtl 139 (253)
T PRK06372 73 HEKMAIEHAK------PLFN-DSVIGTISSSQVLKAFISSS-EK-----IKSVYILESRPMLEGIDMAKLLVKSGIDVVL 139 (253)
T ss_pred HHHHHHHHHH------hhcC-CCEEEEeCCcHHHHHHHHhc-CC-----CCEEEEecCCCchHHHHHHHHHHHCCCCEEE
Confidence 4455788888 9994 5654 457777777665431 11 013333321 24567788889999876
Q ss_pred cCCC------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccC
Q 029161 98 YRDT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV 159 (198)
Q Consensus 98 l~~~------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~ 159 (198)
+... .++|+.|+|||.|-. +++++-=-|+ ..+- -+.-....-||+++..-||.+.
T Consensus 140 i~Dsa~~~~m~~vd~VlvGAd~V~~-nG~v~nkvGT-----~~~A-l~A~~~~vPv~V~~~s~Kf~~~ 200 (253)
T PRK06372 140 LTDASMCEAVLNVDAVIVGSDSVLY-DGGLIHKNGT-----FPLA-LCARYLKKPFYSLTISMKIERN 200 (253)
T ss_pred EehhHHHHHHHhCCEEEECccEEec-CCCEeehhhH-----HHHH-HHHHHcCCCEEEEeeccccCCC
Confidence 5431 369999999999988 6766543333 2221 2222445689999999999764
No 32
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=96.56 E-value=0.0096 Score=50.27 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=66.4
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHH-----------HHHHHcC
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASA-----------NEAAVAG 92 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a-----------~~l~~~g 92 (198)
.++.||+.|+ .+|+||++|.+|.| .-...+..|.+. +++++.+=+=..- ..+.+.|
T Consensus 2 ~~~~Ia~~aA------~~i~dg~~v~lGiG-iP~~va~~l~~~------~~l~l~~E~G~~g~~p~p~~~~~~~~l~~~g 68 (207)
T TIGR02428 2 TRDQIAARAA------QELKDGDYVNLGIG-IPTLVANYLPEG------IEVFLQSENGILGMGPAPEPGEEDPDLINAG 68 (207)
T ss_pred hHHHHHHHHH------HhcCCCCEEEEeec-HHHHHHHHHhcC------CeEEEEEeCceecCccCCCCCCcCHHHHhCC
Confidence 4678999999 99999999999999 666777777552 4777766542210 0222221
Q ss_pred ---------CCEEE------cCCCCcccEEEeecCccCCCCcce---------eecCCCCCcchhHHHHHHHHHhcCcEE
Q 029161 93 ---------IPLDQ------YRDTSQIDFAFDDADIIEEGTLVA---------VIGRQQPKGDESIIQEKSVLNAADKLV 148 (198)
Q Consensus 93 ---------i~v~~------l~~~~~iD~af~Gad~Vd~~~~~~---------ikG~g~~~~~ea~~~ek~i~~~s~~~i 148 (198)
..++. +-+..++|++|+|+-+||. .+++ +-|.|| +. -+ ...|+++|
T Consensus 69 ~~~~~~~~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~-~GnvN~~~~~~~~~~G~GG-----~~---d~-~~~a~~~i 138 (207)
T TIGR02428 69 KQPVTLLPGASYFDSADSFAMIRGGHVDVAVLGALQVSE-NGDLANWMIPGKLVPGMGG-----AM---DL-VAGAKRVI 138 (207)
T ss_pred CCceeeccCcEEecChhheeeEcCCceeEEEechHHhCC-CCcccccccCCccccccCc-----hh---hh-hcCCCEEE
Confidence 11111 1122479999999999997 4532 223333 11 12 24568888
Q ss_pred EEEcC
Q 029161 149 FMVSE 153 (198)
Q Consensus 149 vlaD~ 153 (198)
+...|
T Consensus 139 ~~~~~ 143 (207)
T TIGR02428 139 VAMEH 143 (207)
T ss_pred EEEee
Confidence 87765
No 33
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=96.51 E-value=0.0023 Score=55.42 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc-----------CcHHHHHHH-H
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP-----------TSVASANEA-A 89 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT-----------nS~~~a~~l-~ 89 (198)
.+.++.+++.|+ .++.+++++|++||++.|+|+.+++++|... ..++++||+ ++..++..+ .
T Consensus 32 ~~~~~~l~~~aA--~~L~~~l~~~~~iGv~wG~Tl~~~~~~l~~~----~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~ 105 (255)
T PF04198_consen 32 EDILESLGEAAA--EYLSELLKDGDVIGVGWGRTLYAVANHLPPK----SLPNVTVVPLIGGVGNSNSYQANEIARRLAE 105 (255)
T ss_dssp HHHHHHHHHHHH--HHHHHH--TTEEEEE-TSHHHHHHHHTS--S----SSSCEEEEESBSBTTTSSGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHhCCCCCEEEEcchHHHHHHHHhcCcc----CCCCcEEEECCCCCCCCCCcCHHHHHHHHHH
Confidence 556888999998 4556788999999999999999999999863 236899985 455555544 4
Q ss_pred HcCCCEEEcC-------------------------CCCcccEEEeecCccCCCCccee
Q 029161 90 VAGIPLDQYR-------------------------DTSQIDFAFDDADIIEEGTLVAV 122 (198)
Q Consensus 90 ~~gi~v~~l~-------------------------~~~~iD~af~Gad~Vd~~~~~~i 122 (198)
..|-+...+. ...+.|++|.|...++. +-.+.
T Consensus 106 ~~g~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~~~~~dial~giG~~~~-~~~~~ 162 (255)
T PF04198_consen 106 KLGGKYYFLPAPAFVDSPELRDALLAEPSIREVLDLARKADIALVGIGSPSS-DSTLY 162 (255)
T ss_dssp HHTSEEE---SBSB-SSHHHHHHHHTSHHHHHHHHHHCT-SEEEEEEEEHHH-HHHHC
T ss_pred HhCCcEEEEeCCccCCCHHHHHHHHhChHHHHHHHHHHhCCEEEEecCCCCC-cchHH
Confidence 5554433220 11379999999988877 44443
No 34
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=96.32 E-value=0.01 Score=50.77 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHHHHhccccccccCCCCCEEEECcch---hHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 25 LFRAAKHTVTFLIVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS---T~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
|..=+++|+ ++|+|||+|++|+-. +-.+++++|.++- .+++|++.|+
T Consensus 4 K~~s~~eAv------~~I~DG~ti~~gGf~~~~~P~ali~al~r~~----~~dLtli~~~ 53 (219)
T PRK09920 4 KLMTLQDAT------GFFRDGMTIMVGGFMGIGTPSRLVEALLESG----VRDLTLIAND 53 (219)
T ss_pred ccCcHHHHH------hcCCCCCEEEECcccCcCCHHHHHHHHHhcC----CCceEEEEeC
Confidence 344467888 899999999997643 6788888887652 3699999854
No 35
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=96.16 E-value=0.031 Score=47.82 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHHHhccccccccCCCCCEEEECcc---hhHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 25 LFRAAKHTVTFLIVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g~~IgLgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
|..-+.+|+ +.++|||+|++|.= -+-..++.+|.++ ..+|+|+|.|+.
T Consensus 4 k~~s~~ea~------~~~~dG~ti~~gGFg~~g~P~alI~ali~~----GvkdLt~I~n~~ 54 (220)
T COG1788 4 KLSSAEEAV------ANVKDGDTIMIGGFGTCGIPEALIHALIRQ----GVKDLTVISNNA 54 (220)
T ss_pred hhhhHHHHH------hhCCCCCEEEEccccccCChHHHHHHHHHc----CCcceEEEecCC
Confidence 444566777 99999999999653 4557888888765 237999999994
No 36
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=96.08 E-value=0.035 Score=47.51 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHhccccccccCCCCCEEEECcc---hhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 29 AKHTVTFLIVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 29 A~~Aa~~~~~~~~I~~g~~IgLgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+++|+ ++|+|||+|++|+- .+-..++++|.+. ..+++|+|.|+
T Consensus 9 ~~eAv------~~I~DG~ti~~gGf~~~~~P~ali~~l~r~----~~~~Ltlv~~~ 54 (222)
T TIGR02429 9 AAEAV------SVIPDGATIMIGGFGTAGQPFELIDALIDT----GAKDLTIVSNN 54 (222)
T ss_pred HHHHH------hhCCCCCEEEECCcCCccCcHHHHHHHHhc----CCCCcEEEecC
Confidence 56788 89999999999874 3567777887653 24699999965
No 37
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=95.88 E-value=0.01 Score=53.42 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
..++++++.|+ .+..+.|++||+|+++.|+|+..+++.+.... .++++||+
T Consensus 95 ~~~~~lg~aaA--~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~~----~~~~~vV~ 145 (321)
T COG2390 95 SILRRLGRAAA--QYLESLLKPGDVIGVGWGRTLSAVVDNLPPAP----LRDVKVVQ 145 (321)
T ss_pred HHHHHHHHHHH--HHHHHhCCCCCEEEEeccHHHHHHHHhcCcCc----cCCeEEEE
Confidence 34555888888 45568889999999999999999999997542 25777774
No 38
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.17 Score=45.52 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=86.6
Q ss_pred HHHHHHHhccccccccCCCCCEEE-ECcchhHHHHHHHHHHHhhcCCCCCeE-----EEcCcH--HHHHHHHHcCCCEEE
Q 029161 26 FRAAKHTVTFLIVDTYITSGMVVG-LGSGQASAMAIEYMGRQLRAGALKDVI-----GIPTSV--ASANEAAVAGIPLDQ 97 (198)
Q Consensus 26 ~~IA~~Aa~~~~~~~~I~~g~~Ig-LgsGST~~~la~~L~~~~~~~~l~~it-----vVTnS~--~~a~~l~~~gi~v~~ 97 (198)
+.||..|. ++|.++++|. +|++.|+..|.+.-.++. +..+ +.||.- .-|..+.+.|++...
T Consensus 150 E~Ia~Qa~------ehihsnEviLT~g~SrTV~~FL~~A~kk~-----Rkf~viVaE~~p~~qgH~~Ak~la~~giettV 218 (353)
T KOG1465|consen 150 ENIAVQAI------EHIHSNEVILTLGSSRTVENFLKHAAKKG-----RKFRVIVAEGAPNNQGHELAKPLAQAGIETTV 218 (353)
T ss_pred HhHHHHHH------HHhccCceEEecCccHHHHHHHHHHHhcc-----CceEEEEeecCCcccchHhhHHHHHcCCeeEE
Confidence 45999999 9999999765 588999998887766542 1233 234443 335566788988554
Q ss_pred cCC------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC--------Cc
Q 029161 98 YRD------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--------GS 163 (198)
Q Consensus 98 l~~------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg--------~~ 163 (198)
+.+ ..++.+.++|+..|=. ++++.--.|+ ..--...-..|--+|++|..-|+.+-+- ..
T Consensus 219 I~daaVfA~MsrVnKVIigt~avl~-NGgl~~~~G~------~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~ 291 (353)
T KOG1465|consen 219 IPDAAVFAMMSRVNKVIIGTHAVLA-NGGLRAPSGV------HTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFR 291 (353)
T ss_pred eccHHHHHHhhhcceEEEEeeeEec-CCCeeccchH------HHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcC
Confidence 432 2489999999999988 7886554444 2221222244567999999999987431 23
Q ss_pred ccEEEecCCH
Q 029161 164 VPVLVQPVNW 173 (198)
Q Consensus 164 ipvEV~p~~~ 173 (198)
.|=+++|+.-
T Consensus 292 s~~~il~~~e 301 (353)
T KOG1465|consen 292 SPSEILPFSE 301 (353)
T ss_pred CcccccCccc
Confidence 5666666543
No 39
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=95.22 E-value=0.02 Score=51.19 Aligned_cols=52 Identities=8% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
..+++|+.|+. ++.+++++|++||++.|+|+..+++.+.... ..++++||+-
T Consensus 97 ~~~~vg~~aA~--~L~~~l~~~~~IGvswG~Tl~~~~~~l~~~~---~~~~~~vV~l 148 (318)
T PRK15418 97 IGGRLGIGAAH--MLMSLLQPQQLLAVGFGEATMNTLQHLSGFI---SSQQIRLVTL 148 (318)
T ss_pred HHHHHHHHHHH--HHHHhcCCCCEEEEcchHHHHHHHHhccccC---CCCCCEEEEc
Confidence 45678998883 3457889999999999999999999986311 1258899875
No 40
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=95.18 E-value=0.075 Score=50.41 Aligned_cols=113 Identities=20% Similarity=0.181 Sum_probs=72.0
Q ss_pred HHHHhccccccccCCCCCEEEECcc---hhHHHHHHHHHHHhhc----CCCCCeEEEcCcHH---HHHHHHHcC-CCE--
Q 029161 29 AKHTVTFLIVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRA----GALKDVIGIPTSVA---SANEAAVAG-IPL-- 95 (198)
Q Consensus 29 A~~Aa~~~~~~~~I~~g~~IgLgsG---ST~~~la~~L~~~~~~----~~l~~itvVTnS~~---~a~~l~~~g-i~v-- 95 (198)
+++|+ ++|+|||+|++|.. .+-..+.++|.++.++ |.-+++++++.... ....+...| ++.
T Consensus 5 aeEAv------~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~i 78 (485)
T TIGR03458 5 ADEAA------ALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRL 78 (485)
T ss_pred HHHHH------HhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEe
Confidence 67888 99999999999964 6778889999876432 12236777762221 101111111 211
Q ss_pred -------------------EE---------cC-CC-CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcC
Q 029161 96 -------------------DQ---------YR-DT-SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAAD 145 (198)
Q Consensus 96 -------------------~~---------l~-~~-~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~ 145 (198)
+. +. .. .++|++++-+.-.|. ++++.-|... ... +.++++|+
T Consensus 79 s~~~sp~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~-~Gn~slg~s~-----~~~--~~aa~aAk 150 (485)
T TIGR03458 79 PYQSDPTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITE-DGRIIPTSSV-----GNN--PTFLELAD 150 (485)
T ss_pred cccCCHHHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCC-CceEEEeccc-----chH--HHHHHhCC
Confidence 11 11 11 279999999999999 7888876543 322 45557899
Q ss_pred cEEEEEcCCc
Q 029161 146 KLVFMVSENQ 155 (198)
Q Consensus 146 ~~ivlaD~sK 155 (198)
++|+-++..-
T Consensus 151 ~VIvEVN~~m 160 (485)
T TIGR03458 151 KVIVEVNTWQ 160 (485)
T ss_pred EEEEEECCCC
Confidence 9988887643
No 41
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=94.89 E-value=0.21 Score=47.40 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCCCCEEEE----Ccc-hhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH-HHH---HcC-CC-----------------
Q 029161 42 ITSGMVVGL----GSG-QASAMAIEYMGRQLRAGALKDVIGIPTSVASAN-EAA---VAG-IP----------------- 94 (198)
Q Consensus 42 I~~g~~IgL----gsG-ST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~-~l~---~~g-i~----------------- 94 (198)
++|||+|-. =-| -....+.+.+.+. .+||||+.++|+.-++ .|. +.| ++
T Consensus 40 l~dgmtisfhhh~r~gd~v~n~v~~~~~~~----g~k~l~~~~ssl~~~h~~lv~~i~~g~vt~i~~sg~~g~~~~~is~ 115 (492)
T TIGR01584 40 LKDGMTISFHHHFREGDYVVNMVMRIIADM----GFKDLTLAPSSLTSVHDPLVEHIKKGVVTGITSSGLRGTLGDEISK 115 (492)
T ss_pred CcCCcEEEeeccccCccHHHHHHHHHHHHc----CcCCcEEecccCcchhHHHHHHHhcCeEEEEEeCCcCchHHHHHhc
Confidence 799999976 234 5566666777664 3689999999977655 222 333 11
Q ss_pred ------EEE---------c-CCCCcccEEEeecCccCCCCccee--ec--CCCCCcchhHHHHHHHHHhcCcEEEEEcCC
Q 029161 95 ------LDQ---------Y-RDTSQIDFAFDDADIIEEGTLVAV--IG--RQQPKGDESIIQEKSVLNAADKLVFMVSEN 154 (198)
Q Consensus 95 ------v~~---------l-~~~~~iD~af~Gad~Vd~~~~~~i--kG--~g~~~~~ea~~~ek~i~~~s~~~ivlaD~s 154 (198)
++. + .+..++|++|+++.--|. .+++- .| .++ ..-.....+++|+++|+.+|..
T Consensus 116 g~l~~p~~~~shggr~r~i~~g~l~iDVAfI~Vsp~D~-~Gn~sg~~G~s~~g-----slgya~~dA~~A~kVIaevn~~ 189 (492)
T TIGR01584 116 GILKKPVIIRSHGGRARAIETGELHIDVAFLGVPCCDE-MGNANGMTGKSPCG-----SLGYAIVDAQYADKVVAITDSL 189 (492)
T ss_pred CCCCCCeEEecCCcHHHHHhcCCCCCCEEEEeCCCccc-CCCCcccCCCcccC-----ccchhHHHHHhCCEEEEEECCC
Confidence 111 1 122379999999999998 67764 11 233 3334456678899999999874
No 42
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=94.08 E-value=0.24 Score=40.12 Aligned_cols=39 Identities=36% Similarity=0.790 Sum_probs=29.9
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+..+|+|.+|+|...+-+.|.+....+..++++++..+-
T Consensus 20 ~~~~i~lsgGsTp~~~y~~L~~~~~~~~w~~v~~f~~DE 58 (169)
T cd00458 20 DDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDE 58 (169)
T ss_pred CCEEEEECCCccHHHHHHHHHhhhhhCCccceEEEECcc
Confidence 456899999999999999998653322345788887777
No 43
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=93.25 E-value=0.16 Score=42.20 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEECc--c-hhHHHHHHHHHHHhhc-CC---CCCeEEEcCc-H--H-HHHHH---
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLGS--G-QASAMAIEYMGRQLRA-GA---LKDVIGIPTS-V--A-SANEA--- 88 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgs--G-ST~~~la~~L~~~~~~-~~---l~~itvVTnS-~--~-~a~~l--- 88 (198)
++|..=|++|+ ++|++||.|+.|. + .+-..+.++|.+|..+ ++ ...+++.+.. + . ....+
T Consensus 6 ~~Kl~sa~eA~------~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~ 79 (198)
T PF02550_consen 6 KRKLVSAEEAA------SLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPE 79 (198)
T ss_dssp HHHBE-HHHHH------TTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGC
T ss_pred hhhcCCHHHHH------HhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchh
Confidence 45555689999 9999999999987 4 4455666777654321 11 1123333222 1 1 11111
Q ss_pred -------------------HHcC-CCEEE--c--------CCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHH
Q 029161 89 -------------------AVAG-IPLDQ--Y--------RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEK 138 (198)
Q Consensus 89 -------------------~~~g-i~v~~--l--------~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek 138 (198)
.+.| +..+. + .+...+|++++.+...|. ++++.-|-+ ..-.+
T Consensus 80 ~~~~~~~~s~f~~~~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De-~Gy~slG~s-------~~~~~ 151 (198)
T PF02550_consen 80 SAFHFRHNSFFVGPNERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDE-HGYFSLGTS-------VDYTK 151 (198)
T ss_dssp CTCCEEEEESS--HHHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-T-TSEEECTTB-------HBTHH
T ss_pred hhhhcccCcccCCHHHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCC-CCCEeecHH-------HHhHH
Confidence 1122 11110 1 122348999999999999 788877633 22335
Q ss_pred HHHHhcCcEEEEEcCCccccCCC
Q 029161 139 SVLNAADKLVFMVSENQYKGVLD 161 (198)
Q Consensus 139 ~i~~~s~~~ivlaD~sK~~~~lg 161 (198)
.+++.|+.+|+-+... .-.++|
T Consensus 152 ~~ie~A~~vI~eVN~~-~P~~~G 173 (198)
T PF02550_consen 152 AAIEQAKKVIVEVNPN-MPRTFG 173 (198)
T ss_dssp HHHHHTSEEEEEEETT-STS-EE
T ss_pred HHHhcCCeEEEEcCCC-CCCCCC
Confidence 6668899999998643 333444
No 44
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=93.18 E-value=0.42 Score=44.79 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=55.2
Q ss_pred cCCCCCEEEEC----cc-hhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHH-H---HHcC-CC----------------
Q 029161 41 YITSGMVVGLG----SG-QASAMAIEYMGRQLRAGALKDVIGIPTSVASANE-A---AVAG-IP---------------- 94 (198)
Q Consensus 41 ~I~~g~~IgLg----sG-ST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~-l---~~~g-i~---------------- 94 (198)
=++|||+|-.- -| -.+..+.+.|.+. .+|++|+.++|+.-++. + .+.| ++
T Consensus 16 glkDGMTISFHHH~RnGD~V~nmVm~~i~~m----GiKdLtiaaSSl~~~h~~lv~~I~~GvVt~I~tsg~rG~lg~aiS 91 (466)
T PF04223_consen 16 GLKDGMTISFHHHLRNGDYVLNMVMDEIAEM----GIKDLTIAASSLFPVHDPLVEHIKSGVVTRIETSGMRGPLGEAIS 91 (466)
T ss_dssp T--TT-EEEE--TTGGGB-HHHHHHHHHHHT----T--SEEEEES---GGGGGHHHHHHTTSEEEEEESEEHHHHHHHHH
T ss_pred CCcCCcEEEeehhccCccHHHHHHHHHHHHc----CCCCcEEecccchhhHHHHHHHHhcCeeeEEEeCCcCchHHHHHh
Confidence 37999999873 23 4556666677654 36899999999977552 1 2334 11
Q ss_pred -------EEE-----------cCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcC
Q 029161 95 -------LDQ-----------YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 153 (198)
Q Consensus 95 -------v~~-----------l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~ 153 (198)
++. -++ .++|++|+||..-|. -+|+ .|.+|...=-.+=.-..=++.|+++|++.|.
T Consensus 92 ~G~l~~Pvi~rSHGGR~raIe~Ge-~~IDVAFi~AP~~D~-~GN~-nG~~G~saCGsLGYa~~DA~yA~~VV~iTD~ 165 (466)
T PF04223_consen 92 EGKLKKPVIIRSHGGRARAIESGE-LHIDVAFIAAPSCDE-YGNA-NGVGGKSACGSLGYAMVDAQYADKVVAITDN 165 (466)
T ss_dssp CT--SS-EEE-BHHHHHHHHHCTS-S--SEEEEEESEEET-TS-E-ESSSSSS--S--CCHHHHHHH-SEEEEEESS
T ss_pred CCCCCCCEEEeCCCCchhheecCC-cceEEEEEcCCcccc-ccCc-CCCcCCccccccccchhhHHhcCcEEEEecC
Confidence 111 123 389999999999998 5665 3444422211222223346789999999986
No 45
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=92.25 E-value=0.8 Score=43.64 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=78.8
Q ss_pred hccCHHHHHH-----HHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcH-----HHHH
Q 029161 18 LSNGSSVLFR-----AAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSV-----ASAN 86 (198)
Q Consensus 18 ~~~~~~~K~~-----IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~-----~~a~ 86 (198)
+.+..++|.- |.+.|. +-|+|||+|.. |+.+++..+..+-.+..+ .. ++.||-+-- ....
T Consensus 334 I~~~i~eki~~A~qaI~q~a~------~KI~dgdviltyg~s~vV~~ill~A~~~~k--~f-rVvVVDSRP~~EG~~~lr 404 (556)
T KOG1467|consen 334 IDRFIAEKIILADQAISQHAV------TKIQDGDVLLTYGSSSVVNMILLEAKELGK--KF-RVVVVDSRPNLEGRKLLR 404 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHhhcCCEEEEecchHHHHHHHHHHHHhCc--ce-EEEEEeCCCCcchHHHHH
Confidence 3344555544 555566 88999998776 888888887766433311 11 344443321 2233
Q ss_pred HHHHcCCCEEE--cCCC----CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcC-cEEEEEcCCccccC
Q 029161 87 EAAVAGIPLDQ--YRDT----SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAAD-KLVFMVSENQYKGV 159 (198)
Q Consensus 87 ~l~~~gi~v~~--l~~~----~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~-~~ivlaD~sK~~~~ 159 (198)
.|...|+++.. +... ..+++.|+||+.+=. ++.+-.=-|+ +.+ .|++.+.+ -++|.|.+-||.++
T Consensus 405 ~Lv~~GinctYv~I~a~syim~evtkvfLGahails-NG~vysR~GT-----a~v--alvAna~nVPVlVCCE~yKF~eR 476 (556)
T KOG1467|consen 405 RLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILS-NGAVYSRVGT-----ACV--ALVANAFNVPVLVCCEAYKFHER 476 (556)
T ss_pred HHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhc-Ccchhhhcch-----HHH--HHHhcccCCCEEEEechhhhhhh
Confidence 45667877543 2221 268999999999976 4443322222 332 45543322 47888999999986
Q ss_pred C--CCcccEEEec
Q 029161 160 L--DGSVPVLVQP 170 (198)
Q Consensus 160 l--g~~ipvEV~p 170 (198)
. ...+-.|.-+
T Consensus 477 vQlDsi~~NEL~d 489 (556)
T KOG1467|consen 477 VQLDSIVSNELGD 489 (556)
T ss_pred hhhhhhhhcccCC
Confidence 3 4344444443
No 46
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=90.17 E-value=0.68 Score=44.07 Aligned_cols=120 Identities=23% Similarity=0.241 Sum_probs=72.3
Q ss_pred cCHHHHHHHHHHHhccccccccCCCCCEEEEC-cc-hhHHHHHHHHHHHhhcC--CCC--CeEE-EcCcHH--HHHHHHH
Q 029161 20 NGSSVLFRAAKHTVTFLIVDTYITSGMVVGLG-SG-QASAMAIEYMGRQLRAG--ALK--DVIG-IPTSVA--SANEAAV 90 (198)
Q Consensus 20 ~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg-sG-ST~~~la~~L~~~~~~~--~l~--~itv-VTnS~~--~a~~l~~ 90 (198)
...++|..=+.+|+ .+|++||.|+.+ +| -+-..+-++|++|.++. .++ .++. .+-|.. .-..+..
T Consensus 10 ~~~~k~~~t~~Eaa------~~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~~~~~~~l~i~~~~gas~~~~~~~~~~~ 83 (501)
T COG0427 10 ELYKKKLITPEEAA------SLIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDLRVLLFTGASIGADEDLKLAE 83 (501)
T ss_pred HHhhhhcCCHHHHH------HhhcCCCEEeecccCCCCchhhHHHHHHHHHhcccccCceEEEEEeccccCcchhhhhhc
Confidence 33334443589999 999999999998 55 66678888888764422 122 2333 333443 2222222
Q ss_pred cC-------CCEEE------------------------cC--CCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHH
Q 029161 91 AG-------IPLDQ------------------------YR--DTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQE 137 (198)
Q Consensus 91 ~g-------i~v~~------------------------l~--~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~e 137 (198)
.| ..+.. ++ ....+|++++-+..+++ +++++-|-+- ...
T Consensus 84 a~~~~~r~p~q~~~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i~~-~G~~i~g~sv-----g~~-- 155 (501)
T COG0427 84 AGEVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAIDE-HGYIIPGTSV-----GNS-- 155 (501)
T ss_pred ccchhhhCccccCHHHHHHHhccCcchhhhhHhhhhHhhcccccCCCcEEEEEeccccC-CceEeecccc-----CCc--
Confidence 21 11100 11 22248999999999999 7888876654 333
Q ss_pred HHHHHhcCcEEEEEcC
Q 029161 138 KSVLNAADKLVFMVSE 153 (198)
Q Consensus 138 k~i~~~s~~~ivlaD~ 153 (198)
+..+..|+++|+-+..
T Consensus 156 ~~~~~~A~kVIveVN~ 171 (501)
T COG0427 156 KSWAEGAEKVIVEVNK 171 (501)
T ss_pred HHHHhhccEEEEEhhc
Confidence 3345788998887644
No 47
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=88.25 E-value=1.1 Score=41.64 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=63.6
Q ss_pred cCCCCCEEEE-----CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHH-H---HHcCC-C-EEE------------
Q 029161 41 YITSGMVVGL-----GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANE-A---AVAGI-P-LDQ------------ 97 (198)
Q Consensus 41 ~I~~g~~IgL-----gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~-l---~~~gi-~-v~~------------ 97 (198)
=++|||+|-. |.-.++..+.+.|++. ..+|+|.-++|+..... + .+.|+ + ++.
T Consensus 61 GlkdGMTiSFHH~fR~GD~vvN~Vm~~Ia~m----GfKnLtlA~SSl~~~h~pliehIknGVVt~I~sSGlRg~lg~~IS 136 (513)
T COG3051 61 GLKDGMTISFHHAFRGGDLVVNMVMDVIAKM----GFKNLTLASSSLSDCHAPLVEHIKNGVVTRIYSSGLRGPLGEEIS 136 (513)
T ss_pred CccCCeEEEeeehhcCCceeHHHHHHHHHHh----CccceeeccchhhhhhHHHHHHHhcCEeeeEeeccccchHHHHHh
Confidence 3799999965 5557777777777764 35799999999877552 2 12331 1 110
Q ss_pred ---------------------cCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcC
Q 029161 98 ---------------------YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 153 (198)
Q Consensus 98 ---------------------l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~ 153 (198)
-++ .++|++|+|+..-|+ -+|+ -|..|-..--.+=.-.+=++.|+++++|.|+
T Consensus 137 ~Gll~~PV~i~SHGGRv~~i~sGe-l~IDvAFlgvP~cDe-~GNa-NG~~GKa~cGSlGYA~vDA~yAd~VV~lTe~ 210 (513)
T COG3051 137 RGLLAEPVQIHSHGGRVHLVQSGE-LHIDVAFLGVPSCDE-FGNA-NGFTGKACCGSLGYAMVDAQYADQVVMLTEE 210 (513)
T ss_pred hhHhhCCeEEeccCceEEEeecCc-eeEEEEEecCCChhh-hcCc-CCCcCccccccccceeechhhcceEEEehhh
Confidence 123 389999999766665 2332 1222200000222223446789999999886
No 48
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=86.79 E-value=7.8 Score=35.35 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEE--ECcch-------hHHHHHHHHHHHhhcCCCCCeEEEcC--------cHHHH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVG--LGSGQ-------ASAMAIEYMGRQLRAGALKDVIGIPT--------SVASA 85 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~Ig--LgsGS-------T~~~la~~L~~~~~~~~l~~itvVTn--------S~~~a 85 (198)
+.-++|++.-+ +++++|+.|. ..+|+ |+.-.++..... | +++.|+.. |=-++
T Consensus 134 e~n~~iG~~G~------~ll~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~---g--k~i~v~a~ETRP~lQGARLTa 202 (346)
T COG0182 134 EANRAIGENGA------ELLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEE---G--KDIRVFADETRPYLQGARLTA 202 (346)
T ss_pred HHHHHHHHHHH------HhhccCCeEEeeecCCceeecCccchHHHHHHHHHC---C--CeeEEEeCCCccccccceeeH
Confidence 44566888889 9999999876 23332 355566666543 2 46877765 33456
Q ss_pred HHHHHcCCCEEEcCC--------CCcccEEEeecCccCCCCcc-eeecCCCCCcchhHHHH-HHHHH-hcCcEEEEEcCC
Q 029161 86 NEAAVAGIPLDQYRD--------TSQIDFAFDDADIIEEGTLV-AVIGRQQPKGDESIIQE-KSVLN-AADKLVFMVSEN 154 (198)
Q Consensus 86 ~~l~~~gi~v~~l~~--------~~~iD~af~Gad~Vd~~~~~-~ikG~g~~~~~ea~~~e-k~i~~-~s~~~ivlaD~s 154 (198)
-+|.+.||++..+.+ ...+|..+.|||-+-. ++. +-| .-+.. .++++ .--.|||.+..|
T Consensus 203 wEL~~~GIpvtLItD~aag~~M~~g~Id~viVGADRI~~-nGdvaNK---------IGTY~lAvlAk~~gIPFyVaAP~s 272 (346)
T COG0182 203 WELVQDGIPVTLITDNAAGHLMQQGMIDAVIVGADRIAA-NGDVANK---------IGTYQLAVLAKHHGIPFYVAAPLS 272 (346)
T ss_pred HHHhhcCCceEEEeccHHHHHHHhCCCcEEEEccceeec-CCcchhh---------hhHHHHHHHHHHcCCCeEEEcccC
Confidence 688889999876542 2369999999999977 442 112 11222 23322 234799999999
Q ss_pred ccccCC--CCcccEEEec
Q 029161 155 QYKGVL--DGSVPVLVQP 170 (198)
Q Consensus 155 K~~~~l--g~~ipvEV~p 170 (198)
-|...+ |..||+|--+
T Consensus 273 TiD~~~~~G~~I~IEER~ 290 (346)
T COG0182 273 TIDFELKSGEDIPIEERD 290 (346)
T ss_pred ccccccCCCCccceeecC
Confidence 998876 4579998765
No 49
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=86.59 E-value=3.9 Score=38.54 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=34.5
Q ss_pred hhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhc
Q 029161 17 ALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRA 69 (198)
Q Consensus 17 ~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~ 69 (198)
|++++..+. .||+.|+..-.--.|++||-+.--|+|-+..+++++|.+..++
T Consensus 202 r~T~~P~~L-~IA~~aa~vI~asg~~kdGFSfQtGaGGaSLAv~~~l~~~M~~ 253 (466)
T PF04223_consen 202 RITKDPREL-LIAEYAAKVIEASGYFKDGFSFQTGAGGASLAVARFLREKMRE 253 (466)
T ss_dssp -----HHHH-HHHHHHHHHHHCTTT-STTEEEE--SSHHHHHHHHHHHHHHHH
T ss_pred cccCChHHH-HHHHHHHHHHHhCcceecCceEEcCCchHHHHHHHHHHHHHHH
Confidence 666665544 4899888444444677999999999999999999999987664
No 50
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=85.35 E-value=2.1 Score=35.54 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=23.4
Q ss_pred ccCCCCCEEEEC----cchhHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 40 TYITSGMVVGLG----SGQASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 40 ~~I~~g~~IgLg----sGST~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
++|+|||+|++| +| +-..++.+|.++.. ++++++.+.-
T Consensus 10 ~~I~dG~~v~~GG~~~~~-~P~al~~~l~r~~~----~~l~~~~~~~ 51 (217)
T PF01144_consen 10 RLIRDGDTVAVGGFGSSG-IPMALVRELARQGH----RDLTLVISEA 51 (217)
T ss_dssp CT--TTEEEEE-SBTTBT-HHHHHHHHHHHHTT----TSEEEEESTT
T ss_pred ccCCCCCEEEECCCcccC-cHHHHHHHHHhcCC----CCcEEEEeCC
Confidence 699999999999 66 45577778876522 3555544443
No 51
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=79.74 E-value=27 Score=33.83 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=62.4
Q ss_pred cccCCCCCEEEECcc--hhHHHHHHHHHHHhhcCCCCCeEEEcC--cHHHHHHHHHcCC--CEEE---------------
Q 029161 39 DTYITSGMVVGLGSG--QASAMAIEYMGRQLRAGALKDVIGIPT--SVASANEAAVAGI--PLDQ--------------- 97 (198)
Q Consensus 39 ~~~I~~g~~IgLgsG--ST~~~la~~L~~~~~~~~l~~itvVTn--S~~~a~~l~~~gi--~v~~--------------- 97 (198)
+.+|+|||+|.|..= --...+++.|.+-.++ ..++++.|-. +......+-+.|+ ++.+
T Consensus 35 ~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~-~~~dLh~v~~~~~~~~~~~l~~~G~a~kl~fs~~g~~~~R~~~av~ 113 (543)
T TIGR01110 35 EAVIAPGDRVVLEGNNQKQADFLSRCLASCDPE-KINDLHMVQSSVPLPEHLDLFEKGIARKLDFSFAGPQSLRIAQLLE 113 (543)
T ss_pred HHhCCCCCEEEECCccccchHHHHhhHHhhCcc-ccCCcEEEEecCCchhHHHHHhcCceeeEEEeecCcchHHHHHHHH
Confidence 488999999999654 4456666756543332 2457777766 4444444444443 1111
Q ss_pred ----------c-----CC---CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcC----cEEEEEcC
Q 029161 98 ----------Y-----RD---TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAAD----KLVFMVSE 153 (198)
Q Consensus 98 ----------l-----~~---~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~----~~ivlaD~ 153 (198)
+ .+ ...+|++++-+.-.|. ++++..|... +.. ..++++|+ .+|+-++.
T Consensus 114 ~G~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~-~GN~slG~s~-~~~------~aaaeAAk~~agiVIVEVNe 183 (543)
T TIGR01110 114 DGKLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADR-DGNLYTGPNT-EDT------PAIVEATAFRDGIVIAQVNE 183 (543)
T ss_pred cCCeeEeehhchHhhhhhhhhccCCcEEEEECCcCCC-CCeEEecCcc-cch------HHHHHhhhhcCCEEEEEECc
Confidence 0 01 1368999999999999 7998764322 112 23334544 67776665
No 52
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=78.96 E-value=3.2 Score=33.61 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=48.3
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCEEEE----CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCC
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGL----GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGI 93 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL----gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi 93 (198)
+..+.++..+.|+.-+ ..++.|++|.| |+|-|+. ++.|.+.+- -+-.|.+..+.+.+.-...++
T Consensus 4 ~~~~~~~t~~lg~~l~------~~l~~g~Vv~L~GdLGAGKTtf--~rgi~~~Lg----~~~~V~SPTFtlv~~Y~~~~~ 71 (149)
T COG0802 4 ILPDEEATLALGERLA------EALKAGDVVLLSGDLGAGKTTL--VRGIAKGLG----VDGNVKSPTFTLVEEYEEGRL 71 (149)
T ss_pred EcCCHHHHHHHHHHHH------hhCCCCCEEEEEcCCcCChHHH--HHHHHHHcC----CCCcccCCCeeeehhhcCCCC
Confidence 3466788899999999 99999999997 8998874 355544321 134455666665544332234
Q ss_pred CEEEcCCCCcccEEEee
Q 029161 94 PLDQYRDTSQIDFAFDD 110 (198)
Q Consensus 94 ~v~~l~~~~~iD~af~G 110 (198)
++ +|+|+|=++
T Consensus 72 ~l------yH~DlYRl~ 82 (149)
T COG0802 72 PL------YHFDLYRLS 82 (149)
T ss_pred cE------EEEeeeccC
Confidence 33 467777666
No 53
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.35 E-value=8.8 Score=28.03 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=38.0
Q ss_pred EEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 47 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 47 ~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
+|.+|.|.....+++.|.+.. .++++|..+-+....+...|++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-----~~vvvid~d~~~~~~~~~~~~~~i~ 46 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-----IDVVVIDRDPERVEELREEGVEVIY 46 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-----SEEEEEESSHHHHHHHHHTTSEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC-----CEEEEEECCcHHHHHHHhccccccc
Confidence 578999999999999998741 3799999999999999888877664
No 54
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=77.32 E-value=3 Score=35.47 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=26.9
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhc--CCCCCeEEEcCc
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRA--GALKDVIGIPTS 81 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~--~~l~~itvVTnS 81 (198)
++.+|+|..|+|...+.+.|.+.... -..++++|+.-.
T Consensus 33 ~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~D 72 (261)
T PRK00443 33 RPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLD 72 (261)
T ss_pred CceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCc
Confidence 67889999999999999999842111 112467776653
No 55
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=76.21 E-value=21 Score=33.42 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHH-HHcCCCEEEcCCC----C
Q 029161 28 AAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA-AVAGIPLDQYRDT----S 102 (198)
Q Consensus 28 IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l-~~~gi~v~~l~~~----~ 102 (198)
+|++-. .-+++-.++.||.|-+....|++|.++ ..++|+|+--...-|..| .+.|..+..+.+. .
T Consensus 168 lA~~~~------~~L~~~~vlvIGAGem~~lva~~L~~~----g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~ 237 (414)
T COG0373 168 LAKRIF------GSLKDKKVLVIGAGEMGELVAKHLAEK----GVKKITIANRTLERAEELAKKLGAEAVALEELLEALA 237 (414)
T ss_pred HHHHHh------cccccCeEEEEcccHHHHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhh
Confidence 455555 445666799999999999999999875 235899998899988866 5677666666542 3
Q ss_pred cccEEEeecCccCC
Q 029161 103 QIDFAFDDADIIEE 116 (198)
Q Consensus 103 ~iD~af~Gad~Vd~ 116 (198)
..|+.|-+..+-++
T Consensus 238 ~~DvVissTsa~~~ 251 (414)
T COG0373 238 EADVVISSTSAPHP 251 (414)
T ss_pred hCCEEEEecCCCcc
Confidence 69999998877665
No 56
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=75.42 E-value=4 Score=39.00 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhccccccccC------CCCCEEEECcchhHHHHHHHHHHHh
Q 029161 22 SSVLFRAAKHTVTFLIVDTYI------TSGMVVGLGSGQASAMAIEYMGRQL 67 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I------~~g~~IgLgsGST~~~la~~L~~~~ 67 (198)
.+..++||+.++ ++| +||.++=+|.|....+++++|.++.
T Consensus 229 ~p~e~~IA~~vA------~lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~m 274 (492)
T TIGR01584 229 DPKELLIAKMAN------DVIVNSGYFKDGFSFQTGTGGAALAVTRFLKEKM 274 (492)
T ss_pred CHHHHHHHHHHH------HHHhhcCCCCCCCEEEccCCHHHHHHHHHHHHHH
Confidence 456667999999 887 8999999999999999999998763
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=74.42 E-value=5.9 Score=35.24 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=40.2
Q ss_pred hhccCHHHHHHHHHHHhccccccccCCCCCE---EEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH
Q 029161 17 ALSNGSSVLFRAAKHTVTFLIVDTYITSGMV---VGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89 (198)
Q Consensus 17 ~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~---IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~ 89 (198)
.|.+.+..|.+...+-+ .+++||+ ||-|-|+++.++|++-. -+++.||.|.+-...++
T Consensus 52 tL~eAQ~~k~~~~~~kl-------~L~~G~~lLDiGCGWG~l~~~aA~~y~--------v~V~GvTlS~~Q~~~~~ 112 (283)
T COG2230 52 TLEEAQRAKLDLILEKL-------GLKPGMTLLDIGCGWGGLAIYAAEEYG--------VTVVGVTLSEEQLAYAE 112 (283)
T ss_pred ChHHHHHHHHHHHHHhc-------CCCCCCEEEEeCCChhHHHHHHHHHcC--------CEEEEeeCCHHHHHHHH
Confidence 45555555555443333 5799997 57777899998888762 26999999998766553
No 58
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=73.78 E-value=0.28 Score=34.56 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHH
Q 029161 21 GSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAM 58 (198)
Q Consensus 21 ~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~ 58 (198)
..+.|.+-+++++ +++|++|-..+-.||||+++
T Consensus 29 ~pd~k~R~vKKi~-----~~LV~Eg~l~yWSSGSTTmY 61 (67)
T PF08679_consen 29 FPDAKPREVKKIV-----NELVNEGKLEYWSSGSTTMY 61 (67)
T ss_dssp -TTS-HHHHHHHH-----HHHHHTTSEEEEEETTEEEE
T ss_pred CCCcCHHHHHHHH-----HHHHhhCeEEEEcCCCcEEe
Confidence 3456777888888 59999999999999999865
No 59
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=70.48 E-value=6.5 Score=32.55 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.5
Q ss_pred ccCCC--CCEEEECcchhHHHHHHHHHHH
Q 029161 40 TYITS--GMVVGLGSGQASAMAIEYMGRQ 66 (198)
Q Consensus 40 ~~I~~--g~~IgLgsGST~~~la~~L~~~ 66 (198)
+.|++ +.+|+|..|+|...+.+.|...
T Consensus 13 ~~i~~~~~~~i~lsgG~T~~~~~~~l~~~ 41 (232)
T cd01399 13 ELIREKPPAVLGLATGSTPLGVYEELIEL 41 (232)
T ss_pred HHHHhCCCcEEEEcCCCCHHHHHHHHHHH
Confidence 66776 7899999999999999999754
No 60
>KOG2828 consensus Acetyl-CoA hydrolase [Energy production and conversion]
Probab=67.82 E-value=9.6 Score=35.58 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=66.8
Q ss_pred ccCCCCCEEEECcc-hhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHH--------HHHH--------------HcC-CC-
Q 029161 40 TYITSGMVVGLGSG-QASAMAIEYMGRQLRAGALKDVIGIPTSVASA--------NEAA--------------VAG-IP- 94 (198)
Q Consensus 40 ~~I~~g~~IgLgsG-ST~~~la~~L~~~~~~~~l~~itvVTnS~~~a--------~~l~--------------~~g-i~- 94 (198)
.+|+.++.+|+|.= +|-..+++.+.++..+++|..++++--|..-- ...+ +.| +.
T Consensus 34 ~~vks~~f~~vg~~aa~PnaLl~a~~~~~~s~nLn~~~~~h~~~~g~e~~~pe~~~~iq~ns~fvg~~irK~Vn~Gradf 113 (454)
T KOG2828|consen 34 AYVKSSGFTGVGGPAATPNALLEAVEKNNLSGNLNFILFVHASLGGEENAWPEYDMIIQRNSHFVGKPIRKAVNLGRADF 113 (454)
T ss_pred cccccCCceeecccccCcHHHHHHHHHhccccccceeEEeeeccCCccccChhhhhhhhcCccccCcchHHHhhcCcccc
Confidence 78889999999765 77799999999887778887677765554331 1111 111 00
Q ss_pred ---------EEEcCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcC
Q 029161 95 ---------LDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 153 (198)
Q Consensus 95 ---------v~~l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~ 153 (198)
...+-+.+.+|.+|+-+...|. ++++.-|-.- .-.+ ..+ ..|++.|..+..
T Consensus 114 ~pifLsevP~l~t~G~~~~d~alI~vSppde-~Gfc~lG~sV-----dts~-aa~-t~skkIIa~VNt 173 (454)
T KOG2828|consen 114 FPIFLSEVPQLLTYGTYTLDFALIEVSPPDE-DGFCVLGTSV-----DTSP-AAA-TNSKKIIAEVNT 173 (454)
T ss_pred chhHHHhchHHHhcceeeceeEEEEecCCcc-CCceeccCCc-----cchH-HHH-hccchheehhcc
Confidence 0112234589999999999999 6776554322 1122 222 467777777664
No 61
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=67.75 E-value=20 Score=33.57 Aligned_cols=54 Identities=17% Similarity=0.408 Sum_probs=40.7
Q ss_pred HHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhc
Q 029161 15 SRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRA 69 (198)
Q Consensus 15 ~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~ 69 (198)
+-||+.+..|.. ||+.|++--.--.|.++|-+.--|+|-....+.+.|.+..+.
T Consensus 245 AtR~t~nPreLl-IA~~aa~VI~~SgYFkdGFs~QTGtGGAsLaVtrfl~ekM~~ 298 (513)
T COG3051 245 ATRMTTNPRELL-IARSAADVIVNSGYFKDGFSMQTGTGGASLAVTRFLEEKMRR 298 (513)
T ss_pred ceecCCChHHHH-HHHHHhhhhhcCCcccCceeeecCCCchhHHHHHHHHHHHHh
Confidence 348888877765 899999322222355899999999999999999999876553
No 62
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=66.76 E-value=17 Score=27.94 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred ccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH-Hc---CCCEEEcCCCC----cccEEEeec
Q 029161 40 TYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VA---GIPLDQYRDTS----QIDFAFDDA 111 (198)
Q Consensus 40 ~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~-~~---gi~v~~l~~~~----~iD~af~Ga 111 (198)
.-++...++.||+|-+...++.+|.+. ..++|+++.-+.+-+..+. .. +++...+.+.. .+|+.|-..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~----g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL----GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT----TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEec
Confidence 567778899999999999999999875 2347999999988877663 33 34456655432 578776654
No 63
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=61.44 E-value=3.3 Score=34.45 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=36.7
Q ss_pred CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcC----CCCcccEEEee
Q 029161 51 GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYR----DTSQIDFAFDD 110 (198)
Q Consensus 51 gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~----~~~~iD~af~G 110 (198)
|||+||. ++.|+++. ++.+|....--.+.+++.|+.+..+. ..+.+|+.+|.
T Consensus 10 GsG~TTv--a~~lAe~~------gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~ 65 (179)
T COG1102 10 GSGKTTV--ARELAEHL------GLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDR 65 (179)
T ss_pred CCChhHH--HHHHHHHh------CCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHH
Confidence 7888775 47888763 78888877777777788998865542 33567766664
No 64
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=60.94 E-value=14 Score=35.46 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=37.6
Q ss_pred HHHHHHHHhccccccccCCCCCEEEECcch---hHHHHHHHHHHHhh-cCCCCCeEEEcC
Q 029161 25 LFRAAKHTVTFLIVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLR-AGALKDVIGIPT 80 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS---T~~~la~~L~~~~~-~~~l~~itvVTn 80 (198)
|..-|.+|+ .+|+||++|++++-. .-.+++++|.++.. .|..+++|++-.
T Consensus 4 K~isa~ea~------~~I~DG~~vavsgf~~a~~Pe~ll~al~~r~~~tghPr~Lt~i~~ 57 (527)
T COG4670 4 KVISAQEAA------ALIKDGATVAVSGFNGAGCPEELLKALGERYLETGHPRDLTFISP 57 (527)
T ss_pred ccccHHHHH------hhCCCCCEEEeccccccCCHHHHHHHHHHHHHhhCCCCceEEEcc
Confidence 445588899 999999999996543 34677888877655 466779998853
No 65
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=57.46 E-value=42 Score=28.83 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=42.0
Q ss_pred HHHHHHHhccccccccCCCC-CEEEECcchh---------------HHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH
Q 029161 26 FRAAKHTVTFLIVDTYITSG-MVVGLGSGQA---------------SAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89 (198)
Q Consensus 26 ~~IA~~Aa~~~~~~~~I~~g-~~IgLgsGST---------------~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~ 89 (198)
..+.++|. +++++| ++|=||.+|| +..+++.|.+.. .. .+.+=|.+..++..+.
T Consensus 24 ~~~~~~a~------~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~---~~-piSIDT~~~~v~~aaL 93 (258)
T cd00423 24 DKALEHAR------RMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP---DV-PISVDTFNAEVAEAAL 93 (258)
T ss_pred HHHHHHHH------HHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC---CC-eEEEeCCcHHHHHHHH
Confidence 34556677 889998 7999999999 334444443211 12 4888899999988877
Q ss_pred HcCCCEE
Q 029161 90 VAGIPLD 96 (198)
Q Consensus 90 ~~gi~v~ 96 (198)
+.|.+++
T Consensus 94 ~~g~~iI 100 (258)
T cd00423 94 KAGADII 100 (258)
T ss_pred HhCCCEE
Confidence 7776655
No 66
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=56.07 E-value=32 Score=27.82 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=40.3
Q ss_pred CEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 46 MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 46 ~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
.+||=..|.|+-.+++.+........ .+++|||++-.+...+...|...++
T Consensus 69 ~Vvft~~~~tAD~~Ie~~v~~~~~~~-~~v~VVTSD~~iq~~~~~~GA~~is 119 (166)
T PF05991_consen 69 EVVFTKEGETADDYIERLVRELKNRP-RQVTVVTSDREIQRAARGRGAKRIS 119 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCC-CeEEEEeCCHHHHHHHhhCCCEEEc
Confidence 46777889999999988876644311 5899999999999988888876665
No 67
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=53.11 E-value=20 Score=30.53 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=29.2
Q ss_pred CcchhHH--HHHHHHHHHhhcCCCCCeEEEcCcHHH---HHHHHH-cCCCEEE
Q 029161 51 GSGQASA--MAIEYMGRQLRAGALKDVIGIPTSVAS---ANEAAV-AGIPLDQ 97 (198)
Q Consensus 51 gsGST~~--~la~~L~~~~~~~~l~~itvVTnS~~~---a~~l~~-~gi~v~~ 97 (198)
|||-|+. .+++.|.++ + .+.||||++.+ |..+.+ .|.+++-
T Consensus 23 GSGKTaLie~~~~~L~~~-----~-~~aVI~~Di~t~~Da~~l~~~~g~~i~~ 69 (202)
T COG0378 23 GSGKTALIEKTLRALKDE-----Y-KIAVITGDIYTKEDADRLRKLPGEPIIG 69 (202)
T ss_pred CcCHHHHHHHHHHHHHhh-----C-CeEEEeceeechhhHHHHHhCCCCeeEE
Confidence 7887763 445666553 2 69999999999 557777 7877654
No 68
>PRK10646 ADP-binding protein; Provisional
Probab=53.02 E-value=24 Score=28.47 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHHhccccccccCCCCCEEEE----CcchhHHHHHHHHHH
Q 029161 20 NGSSVLFRAAKHTVTFLIVDTYITSGMVVGL----GSGQASAMAIEYMGR 65 (198)
Q Consensus 20 ~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL----gsGST~~~la~~L~~ 65 (198)
...++=+++|++-+ ..+++|++|.| |+|-|+. ++.|.+
T Consensus 9 ~s~~~t~~l~~~la------~~l~~g~vi~L~GdLGaGKTtf--~rgl~~ 50 (153)
T PRK10646 9 PDEQATLDLGARVA------KACDGATVIYLYGDLGAGKTTF--SRGFLQ 50 (153)
T ss_pred CCHHHHHHHHHHHH------HhCCCCcEEEEECCCCCCHHHH--HHHHHH
Confidence 45667778899888 99999999986 8898874 355554
No 69
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=49.54 E-value=31 Score=23.69 Aligned_cols=30 Identities=30% Similarity=0.235 Sum_probs=24.6
Q ss_pred EEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 47 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 47 ~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
++.+|+|-+..++|..|.+.- .++|++..+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g-----~~vtli~~~ 31 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELG-----KEVTLIERS 31 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTT-----SEEEEEESS
T ss_pred EEEECcCHHHHHHHHHHHHhC-----cEEEEEecc
Confidence 578999999999999998752 378888765
No 70
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=46.04 E-value=36 Score=29.74 Aligned_cols=56 Identities=25% Similarity=0.244 Sum_probs=32.4
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCE---EEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHH
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMV---VGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA 88 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~---IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l 88 (198)
|.+.+..|.......+ -+++|+. ||-|-|+++.++++.-. -.++.||.|-+-...+
T Consensus 43 Le~AQ~~k~~~~~~~~-------~l~~G~~vLDiGcGwG~~~~~~a~~~g--------~~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKL-------GLKPGDRVLDIGCGWGGLAIYAAERYG--------CHVTGITLSEEQAEYA 101 (273)
T ss_dssp HHHHHHHHHHHHHTTT-------T--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------CCCCCCEEEEeCCCccHHHHHHHHHcC--------cEEEEEECCHHHHHHH
Confidence 4444445554433333 3789995 45566688888777652 1699999999887765
No 71
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=44.95 E-value=29 Score=33.16 Aligned_cols=52 Identities=13% Similarity=0.326 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhccccccccCC----CC------CEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYIT----SG------MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVA 83 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~----~g------~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~ 83 (198)
.+.-++||+..+ ++|+ || .+|=+|-|+.-.+++..|.++ .++++.|-|-=+.
T Consensus 222 ~~~~~~Ia~~va------~~i~~~~~dG~~~~~~~tlQ~GiG~ipnAv~~~L~~~----~~kdLgihtem~~ 283 (485)
T TIGR03458 222 DEVSQKIAGHLI------DFLDHEVKAGRLPKNLLPLQSGVGNIANAVLAGLGDS----PFENLTMYTEVIQ 283 (485)
T ss_pred CHHHHHHHHHHH------HHHHHHHhcCCCCCCCCceeecCChHHHHHHHHHhcC----CCCCceEEeeech
Confidence 446677999999 8875 78 999999999999999999764 1245655554433
No 72
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=42.05 E-value=76 Score=30.23 Aligned_cols=49 Identities=18% Similarity=0.109 Sum_probs=41.5
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
++.+|-+|.|..-..+++.|.++. .++++|-++-+....+++.|.+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g-----~~vvvId~d~~~~~~~~~~g~~~i~ 465 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG-----IPLVVIETSRTRVDELRERGIRAVL 465 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC-----CCEEEEECCHHHHHHHHHCCCeEEE
Confidence 377899999999999999997641 3799999999988888888887664
No 73
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=41.13 E-value=51 Score=26.95 Aligned_cols=54 Identities=13% Similarity=-0.065 Sum_probs=40.8
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
+-|.|.+-|++++..+.+.+.+......+.+..+++-+-.++..+.+.|+....
T Consensus 177 ~~d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~~ 230 (249)
T PRK05928 177 EVDAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVII 230 (249)
T ss_pred CCCEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCcce
Confidence 568999999999999999886431000123688999999999999999976443
No 74
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.25 E-value=60 Score=28.70 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=39.4
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+...+||+++.+.+. +.+..-=-|..|+|++...=+-+|.++.+.-....+-++|...
T Consensus 53 ~Ls~eEr~~v~~~~v------~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 53 TLTLEERKEVLEAVV------EAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred hcCHHHHHHHHHHHH------HHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 456789999999888 7666444488888877655555666554432245788888764
No 75
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=39.86 E-value=1.1e+02 Score=26.53 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=47.8
Q ss_pred cCCCCCchHHhhccCHHHHHHHHHHHhccccccccCCCC-CEEEECcchh---------------HHHHHHHHHHHhhcC
Q 029161 7 RGSSSSDSSRALSNGSSVLFRAAKHTVTFLIVDTYITSG-MVVGLGSGQA---------------SAMAIEYMGRQLRAG 70 (198)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g-~~IgLgsGST---------------~~~la~~L~~~~~~~ 70 (198)
.|-|-|+-++.++ . ..+.++|. +++++| ++|=||.-|| +..+++.|.+..
T Consensus 10 tpdSF~dg~~~~~----~-~~~~~~a~------~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~--- 75 (257)
T cd00739 10 TPDSFSDGGRFLS----L-DKAVAHAE------KMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL--- 75 (257)
T ss_pred CCCCCCCCCCCCC----H-HHHHHHHH------HHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC---
Confidence 3555555443332 2 33455577 888988 7899987666 444555554321
Q ss_pred CCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 71 ALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 71 ~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
. ..+.+=|.+.+++..+.+.|..++.
T Consensus 76 ~-~plSIDT~~~~v~e~al~~G~~iIN 101 (257)
T cd00739 76 D-VLISVDTFRAEVARAALEAGADIIN 101 (257)
T ss_pred C-CcEEEeCCCHHHHHHHHHhCCCEEE
Confidence 1 2477778888888877777877654
No 76
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=39.02 E-value=24 Score=27.44 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=23.8
Q ss_pred HHHHHHHhccccccccCCCCCEEEE----CcchhHHHHHHHHHHH
Q 029161 26 FRAAKHTVTFLIVDTYITSGMVVGL----GSGQASAMAIEYMGRQ 66 (198)
Q Consensus 26 ~~IA~~Aa~~~~~~~~I~~g~~IgL----gsGST~~~la~~L~~~ 66 (198)
+++|+.-+ +.+++|++|.| |+|-|+. ++.|.+.
T Consensus 2 ~~la~~l~------~~l~~g~vi~L~GdLGaGKTtf--~r~l~~~ 38 (123)
T PF02367_consen 2 IRLAKKLA------QILKPGDVILLSGDLGAGKTTF--VRGLARA 38 (123)
T ss_dssp HHHHHHHH------HHHSS-EEEEEEESTTSSHHHH--HHHHHHH
T ss_pred HHHHHHHH------HhCCCCCEEEEECCCCCCHHHH--HHHHHHH
Confidence 35778777 88899999997 8998874 3555543
No 77
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=38.04 E-value=1.1e+02 Score=23.17 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=34.9
Q ss_pred EEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEc
Q 029161 48 VGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQY 98 (198)
Q Consensus 48 IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l 98 (198)
..+|+|..=..+|-+|.+.. .++++++.+- .+..+.+.|+.+..-
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g-----~~V~l~~r~~-~~~~~~~~g~~~~~~ 46 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAG-----HDVTLVSRSP-RLEAIKEQGLTITGP 46 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTT-----CEEEEEESHH-HHHHHHHHCEEEEET
T ss_pred EEECcCHHHHHHHHHHHHCC-----CceEEEEccc-cHHhhhheeEEEEec
Confidence 46899999999999997631 4799999999 666677778765543
No 78
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=37.04 E-value=1.6e+02 Score=27.31 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=45.6
Q ss_pred CCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH-HcC-CCEEEcCC----CCcccEEEeecCc
Q 029161 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAG-IPLDQYRD----TSQIDFAFDDADI 113 (198)
Q Consensus 42 I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~-~~g-i~v~~l~~----~~~iD~af~Gad~ 113 (198)
+++-.++.+|+|-+...+++.|... +..+|+++.-+..-+..+. ..+ .....+.+ ....|+.|-....
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~----g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTAL----APKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHc----CCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC
Confidence 4445688889999999999999764 1246888888888777664 444 44444332 1246777665543
No 79
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=35.90 E-value=68 Score=25.19 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEE----CcchhHHHHHHHHHHH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGL----GSGQASAMAIEYMGRQ 66 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL----gsGST~~~la~~L~~~ 66 (198)
.++-+++|+.-+ ..+++|++|.| |+|-|+. ++.+.+.
T Consensus 5 ~~~t~~l~~~l~------~~l~~~~~i~l~G~lGaGKTtl--~~~l~~~ 45 (133)
T TIGR00150 5 EKAMDKFGKAFA------KPLDFGTVVLLKGDLGAGKTTL--VQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHH------HhCCCCCEEEEEcCCCCCHHHH--HHHHHHH
Confidence 456667888888 88999999986 8887764 3566553
No 80
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=35.65 E-value=1.3e+02 Score=26.74 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=40.6
Q ss_pred HHHHHhccccccccCCCC-CEEEECcchh---------------HHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHc
Q 029161 28 AAKHTVTFLIVDTYITSG-MVVGLGSGQA---------------SAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 91 (198)
Q Consensus 28 IA~~Aa~~~~~~~~I~~g-~~IgLgsGST---------------~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~ 91 (198)
+.++|. +++++| |+|=||.-|| +..+++.|.+.. . ..|.|=|....++..+.+.
T Consensus 40 a~~~a~------~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~---~-~~ISIDT~~~~va~~AL~~ 109 (282)
T PRK11613 40 AVKHAN------LMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF---E-VWISVDTSKPEVIRESAKA 109 (282)
T ss_pred HHHHHH------HHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC---C-CeEEEECCCHHHHHHHHHc
Confidence 556677 899998 7999995555 333444544321 1 2478888999999888778
Q ss_pred CCCEE
Q 029161 92 GIPLD 96 (198)
Q Consensus 92 gi~v~ 96 (198)
|..++
T Consensus 110 GadiI 114 (282)
T PRK11613 110 GAHII 114 (282)
T ss_pred CCCEE
Confidence 87766
No 81
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=35.14 E-value=1.5e+02 Score=20.82 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHhcCcEEEEEcCCccc
Q 029161 140 VLNAADKLVFMVSENQYK 157 (198)
Q Consensus 140 i~~~s~~~ivlaD~sK~~ 157 (198)
+...|+.+++.++.+...
T Consensus 58 ~l~~ad~viv~~~~~~~s 75 (104)
T cd02042 58 ALAAADLVLIPVQPSPLD 75 (104)
T ss_pred HHHHCCEEEEeccCCHHH
Confidence 336889999998887653
No 82
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=34.94 E-value=1e+02 Score=24.78 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=40.8
Q ss_pred CEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEc
Q 029161 46 MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQY 98 (198)
Q Consensus 46 ~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l 98 (198)
+.|.+-|.+++..+.+.+.+.. ...++++.+++-+-.++..|.+.|++....
T Consensus 175 ~~iiftS~~~v~~f~~~~~~~~-~~~~~~~~~~aig~~t~~~l~~~g~~~~~~ 226 (239)
T cd06578 175 DAVLFTSPSTVRNLLELLGKEG-RALLKNVKIAAIGPRTAEALRELGLKVVIV 226 (239)
T ss_pred cEEEEeCHHHHHHHHHHHhhhh-hhhhcCCeEEEECHHHHHHHHHcCCCceee
Confidence 4799999999999999997521 011357999999999999999999875543
No 83
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=34.75 E-value=54 Score=26.73 Aligned_cols=52 Identities=19% Similarity=0.093 Sum_probs=41.2
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
+-+.|.+-|++++..+.+.+.+.. ..+.++.+++=+-.++..+.+.|++.+.
T Consensus 168 ~~~~v~ftS~~~~~~~~~~~~~~~--~~~~~~~~~~ig~~ta~~l~~~g~~~~~ 219 (231)
T PF02602_consen 168 EIDAVVFTSPSAVRAFLELLKKNG--ALLKRVPIVAIGPRTAKALRELGFKVDI 219 (231)
T ss_dssp TTSEEEESSHHHHHHHHHHSSGHH--HHHTTSEEEESSHHHHHHHHHTT-SCSE
T ss_pred CCCEEEECCHHHHHHHHHHhHhhh--hhhhCCEEEEECHHHHHHHHHcCCCceE
Confidence 458999999999999999987520 0125899999999999999999987633
No 84
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=34.34 E-value=2.8e+02 Score=23.28 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccccccccCCCCCE---EEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH-------c
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMV---VGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-------A 91 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~---IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-------~ 91 (198)
.+|=+++.-.++ -+++|+. ||-||||-+.+++ .+... ..++.|--+-......++ .
T Consensus 19 K~EIRal~ls~L-------~~~~g~~l~DIGaGtGsi~iE~a-~~~p~------~~v~AIe~~~~a~~~~~~N~~~fg~~ 84 (187)
T COG2242 19 KEEIRALTLSKL-------RPRPGDRLWDIGAGTGSITIEWA-LAGPS------GRVIAIERDEEALELIERNAARFGVD 84 (187)
T ss_pred HHHHHHHHHHhh-------CCCCCCEEEEeCCCccHHHHHHH-HhCCC------ceEEEEecCHHHHHHHHHHHHHhCCC
Q ss_pred CCCEEE------cCCCCcccEEEee
Q 029161 92 GIPLDQ------YRDTSQIDFAFDD 110 (198)
Q Consensus 92 gi~v~~------l~~~~~iD~af~G 110 (198)
++.++. |.+..++|.+|+|
T Consensus 85 n~~vv~g~Ap~~L~~~~~~daiFIG 109 (187)
T COG2242 85 NLEVVEGDAPEALPDLPSPDAIFIG 109 (187)
T ss_pred cEEEEeccchHhhcCCCCCCEEEEC
No 85
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=32.45 E-value=1.5e+02 Score=28.47 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=44.7
Q ss_pred HHHHHHHhccccccccCCCC-CEEEECcchh------HHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 26 FRAAKHTVTFLIVDTYITSG-MVVGLGSGQA------SAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 26 ~~IA~~Aa~~~~~~~~I~~g-~~IgLgsGST------~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
..|.++|. .++++| |+|=||.+|| +..+++.|.+.. . ..+.|=|.+..++..+.+.|..++.
T Consensus 165 ~~i~~~A~------~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~---~-~pISIDT~~~~v~eaAL~aGAdiIN 233 (499)
T TIGR00284 165 DGIEGLAA------RMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL---D-SPVIADTPTLDELYEALKAGASGVI 233 (499)
T ss_pred HHHHHHHH------HHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC---C-CcEEEeCCCHHHHHHHHHcCCCEEE
Confidence 56788888 899998 8999999988 555555554321 1 2577778888888877777866553
No 86
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=32.16 E-value=98 Score=26.45 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=34.1
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
.+...+|++++.+.++ +.+.....|..|.|++...-+.++.++.+.-....+.++|.
T Consensus 45 ~~ls~~Er~~l~~~~~------~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 45 PTLTDEERKEVIEAVV------EAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred ccCCHHHHHHHHHHHH------HHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3456789999999999 77776666777777544332233333322212235666664
No 87
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=31.62 E-value=52 Score=25.96 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 42 I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
.++..++-+|+|.|...++..|.+. + +.+|+++-+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~---g--~~V~~~~R~ 199 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKA---G--KSVTLVTRS 199 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTT---C--SEEEEEESS
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhh---C--CEEEEEecC
Confidence 4567789999999999999999875 2 478888765
No 88
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=31.32 E-value=36 Score=22.77 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCCCCEEEECcchhHHHHHHHHHHHh
Q 029161 42 ITSGMVVGLGSGQASAMAIEYMGRQL 67 (198)
Q Consensus 42 I~~g~~IgLgsGST~~~la~~L~~~~ 67 (198)
.+||...-+-.|+|+..+|+.|...+
T Consensus 5 lpdG~~~~~~~g~T~~d~A~~I~~~l 30 (60)
T PF02824_consen 5 LPDGSIKELPEGSTVLDVAYSIHSSL 30 (60)
T ss_dssp ETTSCEEEEETTBBHHHHHHHHSHHH
T ss_pred CCCCCeeeCCCCCCHHHHHHHHCHHH
Confidence 38999999999999999999998654
No 89
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=31.23 E-value=2.5e+02 Score=24.88 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=41.2
Q ss_pred EEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc------------HHHHHHHHHcCCCEEEcCCC-----------Cc
Q 029161 47 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS------------VASANEAAVAGIPLDQYRDT-----------SQ 103 (198)
Q Consensus 47 ~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS------------~~~a~~l~~~gi~v~~l~~~-----------~~ 103 (198)
++++|++.......+.|.+. + ..-+.|||.. ..+...+.++|++++..... .+
T Consensus 3 Ivf~Gs~~~a~~~L~~L~~~---~-~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~ 78 (313)
T TIGR00460 3 IVFFGTPTFSLPVLEELRED---N-FEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELK 78 (313)
T ss_pred EEEECCCHHHHHHHHHHHhC---C-CcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhhC
Confidence 68999999988888888653 1 1235678754 24677788889998754321 26
Q ss_pred ccEEEee
Q 029161 104 IDFAFDD 110 (198)
Q Consensus 104 iD~af~G 110 (198)
+|+.|.-
T Consensus 79 ~Dliv~~ 85 (313)
T TIGR00460 79 PDVIVVV 85 (313)
T ss_pred CCEEEEc
Confidence 7777653
No 90
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=30.92 E-value=81 Score=27.29 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=39.8
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
.-++|.+-||+|+..|.+.+.+... ..++++.++.-|-.++..+...|++.+.
T Consensus 190 ~~d~i~ftS~sav~~f~~~l~~~~~-~~l~~~~~v~is~rtA~~a~~~G~~~v~ 242 (266)
T PRK08811 190 PRSVLALSSAEALTLILQQLPDALR-RALQQRPVVASSDRLLDAAHAAGFIHVM 242 (266)
T ss_pred CCCEEEEChHHHHHHHHHHhhhhHH-HHHhCCCEEEeCHHHHHHHHHcCCCcee
Confidence 3579999999999999888864210 0124677788899999999999976543
No 91
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=30.34 E-value=1.5e+02 Score=29.06 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=41.5
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
.+.+|-+|.|..-..+++.|.++. .++++|-++.+....+++.|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-----~~vvvID~d~~~v~~~~~~g~~v~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG-----VKMTVLDHDPDHIETLRKFGMKVFY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC-----CCEEEEECCHHHHHHHHhcCCeEEE
Confidence 467999999999999999997641 3799999999998888888887764
No 92
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=30.27 E-value=1.2e+02 Score=23.24 Aligned_cols=46 Identities=7% Similarity=0.064 Sum_probs=22.9
Q ss_pred cCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH
Q 029161 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN 86 (198)
Q Consensus 41 ~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~ 86 (198)
-|.+..++.-+.+++|.+=+..+.+.++..+++++.+||+......
T Consensus 67 gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~~~H~~R 112 (155)
T PF02698_consen 67 GVPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVTSPYHMRR 112 (155)
T ss_dssp ---GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--CCCHHH
T ss_pred ccchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECCHHHHHH
Confidence 3666667777777777666666665555444467888888777744
No 93
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=29.86 E-value=1.6e+02 Score=28.62 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=41.3
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
++.+|.+|.|.....+++.|.++. .++++|-++.+....+++.|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-----~~vvvID~d~~~v~~~~~~g~~v~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK-----MRITVLERDISAVNLMRKYGYKVYY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC-----CCEEEEECCHHHHHHHHhCCCeEEE
Confidence 467999999999999999997641 3799999999998888888887664
No 94
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=29.05 E-value=2.8e+02 Score=23.43 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhh---------cCC----------CCCeEEEcCcHH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLR---------AGA----------LKDVIGIPTSVA 83 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~---------~~~----------l~~itvVTnS~~ 83 (198)
-++.+.|...+ ..++.|+++++|+-.-...+++.-+.+.. .|. ++++.+|++-..
T Consensus 52 ~~~L~~A~~~i------~~~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~ 125 (204)
T PRK04020 52 DERIRIAAKFL------SRYEPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRG 125 (204)
T ss_pred HHHHHHHHHHH------HHhcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcc
Confidence 35555666666 44689999999998866555555554321 111 356666666543
Q ss_pred H---HHHHHHcCCCEEEcCC
Q 029161 84 S---ANEAAVAGIPLDQYRD 100 (198)
Q Consensus 84 ~---a~~l~~~gi~v~~l~~ 100 (198)
- ..++...|||++.+-+
T Consensus 126 ~~~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 126 DAQAVKEAIEVGIPVVALCD 145 (204)
T ss_pred cHHHHHHHHHhCCCEEEEEe
Confidence 3 3367778999887643
No 95
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=28.72 E-value=3.6e+02 Score=22.76 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=39.7
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcC----CCCcccEEEeec
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYR----DTSQIDFAFDDA 111 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~----~~~~iD~af~Ga 111 (198)
.+++|++|.+ |+|+.-..+++.+..+ | ..+++++.+-.-...++..|....... ....+|.+|+..
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~---G--~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~ 222 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALT---G--PDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEAT 222 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---C--CeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECC
Confidence 4567887777 7666555555555443 2 247777777766667777776533211 112588888854
No 96
>PRK11524 putative methyltransferase; Provisional
Probab=28.51 E-value=39 Score=29.36 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=16.2
Q ss_pred CCCCCEE---EECcchhHHHHHHHHH
Q 029161 42 ITSGMVV---GLGSGQASAMAIEYMG 64 (198)
Q Consensus 42 I~~g~~I---gLgsGST~~~la~~L~ 64 (198)
=.+||+| |.|||||..+. +.|.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA-~~lg 230 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVA-KASG 230 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHH-HHcC
Confidence 3799998 57999998764 4443
No 97
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=28.42 E-value=58 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=18.9
Q ss_pred CCCCCEEEE----CcchhHHHHHHHHHHH
Q 029161 42 ITSGMVVGL----GSGQASAMAIEYMGRQ 66 (198)
Q Consensus 42 I~~g~~IgL----gsGST~~~la~~L~~~ 66 (198)
++...+|.+ |||.|..++++.|.++
T Consensus 93 v~gr~VLIVDDIidTG~Tl~~~~~~L~~~ 121 (176)
T PRK05205 93 IEGKRVILVDDVLYTGRTIRAALDALFDY 121 (176)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHhc
Confidence 444455543 8999999999999764
No 98
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=28.42 E-value=1.2e+02 Score=27.34 Aligned_cols=51 Identities=25% Similarity=0.189 Sum_probs=39.0
Q ss_pred CCEEEECcchhHHHHHHHHHHH-----hhcCCCCCeEEEcCcHHHHHHHHHcCCCE
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQ-----LRAGALKDVIGIPTSVASANEAAVAGIPL 95 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~-----~~~~~l~~itvVTnS~~~a~~l~~~gi~v 95 (198)
-|.|.+-|++|+..|.+.+.+. .....+++++++.=+-.++..|.+.|+++
T Consensus 202 ~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~G~~~ 257 (381)
T PRK07239 202 LDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRAGVPT 257 (381)
T ss_pred ccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHcCCCc
Confidence 3899999999999999988642 00001246788889999999999999875
No 99
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=28.30 E-value=1.6e+02 Score=27.14 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVAS 84 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~ 84 (198)
.++-+++++++- + .+.+-+||+|+|++.- .+++++.+.. ..+..||++..+
T Consensus 70 ~~ev~~~~~~~~------~-~~~d~vIGVGGGk~iD-~aK~~A~~~~----~pfIsvPT~AS~ 120 (360)
T COG0371 70 EEEVERLAAEAG------E-DGADVVIGVGGGKTID-TAKAAAYRLG----LPFISVPTIAST 120 (360)
T ss_pred HHHHHHHHHHhc------c-cCCCEEEEecCcHHHH-HHHHHHHHcC----CCEEEecCcccc
Confidence 456667777555 3 3445689999998764 4677766532 368899998766
No 100
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=28.23 E-value=1.6e+02 Score=24.91 Aligned_cols=49 Identities=20% Similarity=0.092 Sum_probs=38.2
Q ss_pred CEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEE
Q 029161 46 MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLD 96 (198)
Q Consensus 46 ~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~ 96 (198)
|.|.+-|++++..|++.+.+... .++++.++.=|-.++..+++.|++.+
T Consensus 184 d~v~ftS~~~~~~~~~~~~~~~~--~~~~~~~~~ig~~ta~a~~~~G~~~~ 232 (255)
T PRK05752 184 NGLVVSSGQGFEHLQQLAGADWP--ELARLPLFVPSPRVAEQARAAGAQTV 232 (255)
T ss_pred CEEEECCHHHHHHHHHHhChhHH--HhcCceEEEeCHHHHHHHHHcCCCce
Confidence 78999999999999887754210 12467788889999999999998655
No 101
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=28.05 E-value=72 Score=23.24 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.1
Q ss_pred ECcchhHHHHHHHHHHH
Q 029161 50 LGSGQASAMAIEYMGRQ 66 (198)
Q Consensus 50 LgsGST~~~la~~L~~~ 66 (198)
++||.|...+++.|.+.
T Consensus 98 i~tG~Tl~~~~~~L~~~ 114 (125)
T PF00156_consen 98 IDTGGTLKEAIELLKEA 114 (125)
T ss_dssp ESSSHHHHHHHHHHHHT
T ss_pred EcccHHHHHHHHHHHhC
Confidence 47999999999999865
No 102
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=28.02 E-value=4.1e+02 Score=23.27 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=34.5
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHH-HHcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA-AVAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l-~~~gi~v~~ 97 (198)
...++.+|+|..-..+++.|... | ..+++++..+..-+..+ ...|..++.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~---g-~~~V~v~~r~~~ra~~la~~~g~~~~~ 228 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK---G-VAEITIANRTYERAEELAKELGGNAVP 228 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHc---C-CCEEEEEeCCHHHHHHHHHHcCCeEEe
Confidence 33466679999999999999763 1 14688888887766544 556655443
No 103
>PRK10494 hypothetical protein; Provisional
Probab=27.52 E-value=2.1e+02 Score=24.75 Aligned_cols=54 Identities=4% Similarity=-0.036 Sum_probs=37.9
Q ss_pred CCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH---HHHHcCCCEEEc
Q 029161 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN---EAAVAGIPLDQY 98 (198)
Q Consensus 42 I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~---~l~~~gi~v~~l 98 (198)
|.+.+++.-+.+++|.+=+++..+... .+++.+||+...... .+++.|++++..
T Consensus 151 Vp~~~Ii~e~~s~nT~eNa~~~~~~~~---~~~iiLVTsa~Hm~RA~~~f~~~Gl~v~p~ 207 (259)
T PRK10494 151 VPREDIITLDLPKDTEEEAAAVKQAIG---DAPFLLVTSASHLPRAMIFFQQEGLNPLPA 207 (259)
T ss_pred CCHHHeeeCCCCCCHHHHHHHHHHHhC---CCCEEEECCHHHHHHHHHHHHHcCCceeec
Confidence 666677777888777776776665432 146899999998844 346778887754
No 104
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=27.51 E-value=2.2e+02 Score=24.05 Aligned_cols=96 Identities=16% Similarity=0.338 Sum_probs=55.0
Q ss_pred cccccCCCCC-EEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcC------CC--CcccEE
Q 029161 37 IVDTYITSGM-VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYR------DT--SQIDFA 107 (198)
Q Consensus 37 ~~~~~I~~g~-~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~------~~--~~iD~a 107 (198)
++.+.|++|. ++=||.|.-. +.++|.+. + . -....|-.+..-...|.+.|++|+..+ .+ ..+|.+
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~--LL~~L~~~-k--~-v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGE--LLAYLKDE-K--Q-VDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred HHHHHcCCCCEEEecCCCchH--HHHHHHHh-c--C-CeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEE
Confidence 3448899997 5557776443 33566553 1 0 145667777777778889999988632 11 256666
Q ss_pred EeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEc
Q 029161 108 FDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVS 152 (198)
Q Consensus 108 f~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD 152 (198)
+++- .+-. .. .+..+-+.|+ +-+++.||--.
T Consensus 80 Ilsq-tLQ~-----------~~-~P~~vL~Eml-RVgr~~IVsFP 110 (193)
T PF07021_consen 80 ILSQ-TLQA-----------VR-RPDEVLEEML-RVGRRAIVSFP 110 (193)
T ss_pred ehHh-HHHh-----------Hh-HHHHHHHHHH-HhcCeEEEEec
Confidence 6542 2211 11 1233333555 77888887643
No 105
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=27.09 E-value=2.4e+02 Score=24.38 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=46.0
Q ss_pred cCCCCCchHHhhccCHHHHHHHHHHHhccccccccCCCC-CEEEECcchh---------------HHHHHHHHHHHhhcC
Q 029161 7 RGSSSSDSSRALSNGSSVLFRAAKHTVTFLIVDTYITSG-MVVGLGSGQA---------------SAMAIEYMGRQLRAG 70 (198)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g-~~IgLgsGST---------------~~~la~~L~~~~~~~ 70 (198)
.|-|-|+-++.++. ..+.++|. +++++| ++|=||.-+| +..+++.+.+..
T Consensus 9 tpdSF~dg~~~~~~-----~~~~~~a~------~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~--- 74 (257)
T TIGR01496 9 TPDSFSDGGRFLSV-----DKAVAHAE------RMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP--- 74 (257)
T ss_pred CCCCCCCCCCCCCH-----HHHHHHHH------HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC---
Confidence 46666665444421 22455566 778888 7888986555 333444443221
Q ss_pred CCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 71 ALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 71 ~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
.. .+.+=|.+..+...+.+.|..++.
T Consensus 75 ~~-plsiDT~~~~vi~~al~~G~~iIN 100 (257)
T TIGR01496 75 DV-PISVDTYRAEVARAALEAGADIIN 100 (257)
T ss_pred CC-eEEEeCCCHHHHHHHHHcCCCEEE
Confidence 12 478888888888877777877553
No 106
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=26.62 E-value=3.1e+02 Score=23.03 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhh---------c----------CCCCCeEEEcCcHH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLR---------A----------GALKDVIGIPTSVA 83 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~---------~----------~~l~~itvVTnS~~ 83 (198)
.++...|...+ ..+..|+++++|+-.-...+++..+++.. . -.++++.+|++-..
T Consensus 46 ~~~L~~A~~~i------~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~ 119 (196)
T TIGR01012 46 DERLRVAAKFL------VRIEPEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRA 119 (196)
T ss_pred HHHHHHHHHHH------HHhhCCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcc
Confidence 35555666666 45558999999999887777777665421 0 12356777776543
Q ss_pred H---HHHHHHcCCCEEEcCC
Q 029161 84 S---ANEAAVAGIPLDQYRD 100 (198)
Q Consensus 84 ~---a~~l~~~gi~v~~l~~ 100 (198)
- -.++...|||++.+-+
T Consensus 120 ~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 120 DHQALKEASEVGIPIVALCD 139 (196)
T ss_pred ccHHHHHHHHcCCCEEEEee
Confidence 3 3467788999887644
No 107
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=26.46 E-value=1.4e+02 Score=24.77 Aligned_cols=47 Identities=17% Similarity=-0.086 Sum_probs=34.1
Q ss_pred CEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcC
Q 029161 46 MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAG 92 (198)
Q Consensus 46 ~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~g 92 (198)
|+|.+-|++|+..|.+.+........+.++++|.-|-.++..+...+
T Consensus 172 d~i~f~S~~~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~ 218 (240)
T PRK09189 172 DAVLLYSRVAARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASL 218 (240)
T ss_pred CEEEEeCHHHHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhcc
Confidence 78999999999999998853210011246778888889988876654
No 108
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.89 E-value=2.9e+02 Score=23.00 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=38.2
Q ss_pred ccCCCC-CEEEECcc-----hhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCCCcccEEEeecCc
Q 029161 40 TYITSG-MVVGLGSG-----QASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDADI 113 (198)
Q Consensus 40 ~~I~~g-~~IgLgsG-----ST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~iD~af~Gad~ 113 (198)
+.+.+| ++++|.+| +|..++++++.+. .. ++.+||.=......++..|+++..-+. ..++.|.+..+
T Consensus 75 ~~~~~g~~V~~l~~GDP~~ys~~~~l~~~l~~~----~~-~veviPGISS~~aaaa~~g~~l~~~~~--~~~~~~~~~~~ 147 (249)
T PRK06136 75 DYARKGKVVVRLKGGDPFVFGRGGEELEALEAA----GI-PYEVVPGITAAIAAAAYAGIPLTHRGV--ARSVTFVTGHE 147 (249)
T ss_pred HHHHCCCeEEEEeCCCchhhhcHHHHHHHHHHC----CC-CEEEEcCccHHHHHHHHcCCCcccCCc--ceeEEEEeccc
Confidence 444445 56778888 3444555555432 22 688887644444455677877653322 34566666554
Q ss_pred c
Q 029161 114 I 114 (198)
Q Consensus 114 V 114 (198)
-
T Consensus 148 ~ 148 (249)
T PRK06136 148 A 148 (249)
T ss_pred C
Confidence 3
No 109
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=25.78 E-value=2.5e+02 Score=24.92 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=25.1
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~ 89 (198)
.-+|+||+||..- +++.++-.. . ..+..||+.. +..+..
T Consensus 79 d~IIaiGGGs~iD-~aK~ia~~~---~-~p~i~IPTta-tgse~t 117 (337)
T cd08177 79 DGIVAIGGGSTID-LAKAIALRT---G-LPIIAIPTTL-SGSEMT 117 (337)
T ss_pred CEEEEeCCcHHHH-HHHHHHHHh---c-CCEEEEcCCc-hhhhhc
Confidence 4489999997654 456665332 1 2677888876 666554
No 110
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.74 E-value=2.4e+02 Score=24.79 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=41.4
Q ss_pred hHHhhccCHHHHHHHHHHHhccccccccC--CCCCEEEECcchh--HHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH
Q 029161 14 SSRALSNGSSVLFRAAKHTVTFLIVDTYI--TSGMVVGLGSGQA--SAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89 (198)
Q Consensus 14 ~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I--~~g~~IgLgsGST--~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~ 89 (198)
|+..||-.+.+..-|||.-| |+.-| =|.-+=.||-=|| +.+++.+|++. + .|.+||.+.+=|....
T Consensus 146 sa~~LSGGQQQRLcIARalA----v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~-----y-TIviVTHnmqQAaRvS 215 (253)
T COG1117 146 SALGLSGGQQQRLCIARALA----VKPEVLLMDEPTSALDPISTLKIEELITELKKK-----Y-TIVIVTHNMQQAARVS 215 (253)
T ss_pred CccCCChhHHHHHHHHHHHh----cCCcEEEecCcccccCchhHHHHHHHHHHHHhc-----c-EEEEEeCCHHHHHHHh
Confidence 44467777888889999666 11111 1222334444444 36677777643 2 6889999999887665
Q ss_pred H
Q 029161 90 V 90 (198)
Q Consensus 90 ~ 90 (198)
.
T Consensus 216 D 216 (253)
T COG1117 216 D 216 (253)
T ss_pred H
Confidence 4
No 111
>PRK13753 dihydropteroate synthase; Provisional
Probab=25.65 E-value=3.7e+02 Score=23.83 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=48.2
Q ss_pred cCCCCCchHHhhccCHHHHHHHHHHHhccccccccCCCC-CEEEECcchh------------HHHHHHHHHHHhhcCCCC
Q 029161 7 RGSSSSDSSRALSNGSSVLFRAAKHTVTFLIVDTYITSG-MVVGLGSGQA------------SAMAIEYMGRQLRAGALK 73 (198)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g-~~IgLgsGST------------~~~la~~L~~~~~~~~l~ 73 (198)
.|-|-|+-++.+ .. ..+.++|. .++++| |+|=||.-|| ...+.+.|... +... .
T Consensus 11 TPDSFsDGg~~~----~~-d~a~~~a~------~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l-~~~~-~ 77 (279)
T PRK13753 11 TEDSFFDESRRL----DP-AGAVTAAI------EMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDAL-SDQM-H 77 (279)
T ss_pred CCCCCCCCCCCC----CH-HHHHHHHH------HHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHH-HhCC-C
Confidence 455555554433 22 33455577 889998 8999999887 22222333221 2111 2
Q ss_pred CeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 74 DVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 74 ~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
.|.|=|....++..+.+.|..++.
T Consensus 78 ~ISIDT~~~~va~~al~aGadiIN 101 (279)
T PRK13753 78 RVSIDSFQPETQRYALKRGVGYLN 101 (279)
T ss_pred cEEEECCCHHHHHHHHHcCCCEEE
Confidence 588889999999988888877653
No 112
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=25.38 E-value=2.3e+02 Score=25.33 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=28.5
Q ss_pred hHHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHH
Q 029161 14 SSRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEY 62 (198)
Q Consensus 14 ~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~ 62 (198)
.||.++-+.....+..++.+ ++....+.|..++|+.....+-.
T Consensus 81 ~s~~~~g~~~~~~~Le~~la------~~~g~~~~l~~~sG~~an~~ai~ 123 (402)
T TIGR01821 81 GTRNISGTNIPHVELEAELA------DLHGKESALVFTSGYVANDATLA 123 (402)
T ss_pred chhhhhCCcHHHHHHHHHHH------HHhCCCeEEEECchHHHHHHHHH
Confidence 35555544555566677777 67765679999999877554433
No 113
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=25.33 E-value=4.4e+02 Score=22.61 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=31.9
Q ss_pred EECcc--hhHHHHHHHHHHHhhcCCCCCeEEEcCcHHH--HHHHHHcCCCEEEcCC
Q 029161 49 GLGSG--QASAMAIEYMGRQLRAGALKDVIGIPTSVAS--ANEAAVAGIPLDQYRD 100 (198)
Q Consensus 49 gLgsG--ST~~~la~~L~~~~~~~~l~~itvVTnS~~~--a~~l~~~gi~v~~l~~ 100 (198)
.+|.| .-+..+|++|.++ | .+++++++.... ...+++.|++++.+.+
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~---g--~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~ 61 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQ---G--AEVAFACKPLPGDLIDLLLSAGFPVYELPD 61 (279)
T ss_pred cccccHHHHHHHHHHHHHHC---C--CEEEEEeCCCCHHHHHHHHHcCCeEEEecC
Confidence 34455 5677888888543 1 379999886443 4567888998887644
No 114
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.30 E-value=1.6e+02 Score=25.17 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=35.1
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
.+...+|++++.+.++ +...+.-.|..|.|.+...-+.++.+..++-....+.+++..
T Consensus 48 ~~lt~~Er~~l~~~~~------~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 48 PTLSDEEHEAVIEAVV------EAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred hhCCHHHHHHHHHHHH------HHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 3456789999999999 777755677788886443333334333232222346666543
No 115
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=24.83 E-value=3.5e+02 Score=21.37 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 43 TSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 43 ~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
+..-++.+|+|.-....++.|.+. | .++|||..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~---g--a~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT---G--AFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---C--CEEEEEcC
Confidence 455688999999999999988764 1 37999953
No 116
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=24.71 E-value=2e+02 Score=24.93 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcccccccc-CCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH---HHHHcCCCEEEc
Q 029161 24 VLFRAAKHTVTFLIVDTY-ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN---EAAVAGIPLDQY 98 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~-I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~---~l~~~gi~v~~l 98 (198)
|-....+.+. ++ |.+.+++.=+.|.+|++=+.+..+.+. .+++++||+.+.... .++..|++++.+
T Consensus 98 Ea~~M~~yLi------~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~---~~~~iIVTq~fHm~RA~~ia~~~Gi~~~~~ 167 (239)
T PRK10834 98 EPMTMRKDLI------AAGVDPSDIVLDYAGFRTLDSIVRTRKVFD---TNDFIIITQRFHCERALFIALHMGIQAQCY 167 (239)
T ss_pred HHHHHHHHHH------HcCCCHHHEEecCCCCCHHHHHHHHHHHhC---CCCEEEECCHHHHHHHHHHHHHcCCceEEE
Confidence 4444566666 44 777788888888777766665554432 246899999998844 335667765544
No 117
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=24.26 E-value=2.3e+02 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=24.4
Q ss_pred CeEEEcCcHHHHHHHHHcCCCEEEcCC
Q 029161 74 DVIGIPTSVASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 74 ~itvVTnS~~~a~~l~~~gi~v~~l~~ 100 (198)
+..|.||+-.....+.+.|+|++.+.+
T Consensus 99 ~~iVaTnD~eLk~rlr~~GIPvi~lr~ 125 (136)
T COG1412 99 RYIVATNDKELKRRLRENGIPVITLRQ 125 (136)
T ss_pred CEEEEeCCHHHHHHHHHcCCCEEEEeC
Confidence 489999999999999888999999874
No 118
>PF15157 IQ-like: IQ-like
Probab=24.16 E-value=39 Score=25.18 Aligned_cols=16 Identities=38% Similarity=0.202 Sum_probs=13.2
Q ss_pred cCCCCCchHHhhccCH
Q 029161 7 RGSSSSDSSRALSNGS 22 (198)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (198)
.||.||+||+.|++..
T Consensus 71 spsPps~ssdkls~sv 86 (97)
T PF15157_consen 71 SPSPPSLSSDKLSSSV 86 (97)
T ss_pred CCCCCCcchhhhhhhh
Confidence 5889999999997753
No 119
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.15 E-value=33 Score=26.76 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=35.4
Q ss_pred EEEECcchhHHHHHHHHHHHhh--cCCC-CCeEEEcCcHHHHHHHHHcCCCEEEcCCCCcccEEEeecCccCC
Q 029161 47 VVGLGSGQASAMAIEYMGRQLR--AGAL-KDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEE 116 (198)
Q Consensus 47 ~IgLgsGST~~~la~~L~~~~~--~~~l-~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~iD~af~Gad~Vd~ 116 (198)
.+.+|||+|-..+.+.++.+.. -..+ +.+.|.++.-.....-...++++..-+..+..|+.++.-.+.|.
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~~V~~~g~~~~~~~~~~~~~~~i~g~~~~~dl~vl~l~~~Dv 106 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPLEPLPRPIVVSAPGGSINCEGVCPDVPLSIQGHEFVVDLLVLDLGGYDV 106 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEEEEccCeeEEecccccccccceeeeEEEEECCeEEEeeeEEecccceee
Confidence 4788999999888888876532 0111 23444443322110000112333222233467777766666554
No 120
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=23.98 E-value=1.8e+02 Score=25.15 Aligned_cols=54 Identities=6% Similarity=-0.023 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 21 GSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 21 ~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
..+|++++.+.++ +.+...-.|..|.|++...-+-++.+..+.-....+.+++.
T Consensus 52 t~~Er~~~~~~~~------~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P 105 (288)
T cd00954 52 SVEERKQIAEIVA------EAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITP 105 (288)
T ss_pred CHHHHHHHHHHHH------HHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4779999999999 77766566777887543332233333222211234555554
No 121
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=23.70 E-value=1.5e+02 Score=25.69 Aligned_cols=56 Identities=2% Similarity=-0.066 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 20 NGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 20 ~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
-..+|++++.+.++ +.+...-.|..|.|++...-+.++.++.++-....+.++|..
T Consensus 54 Ls~eEr~~~~~~~~------~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 54 LSTEEKKQVLEIVA------EEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred CCHHHHHHHHHHHH------HHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 34579999999999 777755567778886443333344333232123457777664
No 122
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.56 E-value=1.8e+02 Score=25.18 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+-..+|++++.+.++ +.+++.-.|..|.|++...-+-++.++.+.-....+.+++..
T Consensus 50 ~ls~~Er~~~~~~~~------~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 50 TLTHEEHEELIRAVV------EAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred cCCHHHHHHHHHHHH------HHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 456779999999999 777655567777775333333333333232122356666665
No 123
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=23.47 E-value=79 Score=21.15 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=24.6
Q ss_pred EEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHH
Q 029161 48 VGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV 90 (198)
Q Consensus 48 IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~ 90 (198)
||.|+|.++..+++. .. .+++.+..|......+++
T Consensus 3 iG~G~G~~~~~l~~~-~~-------~~v~~~D~~~~~~~~~~~ 37 (95)
T PF08241_consen 3 IGCGTGRFAAALAKR-GG-------ASVTGIDISEEMLEQARK 37 (95)
T ss_dssp ET-TTSHHHHHHHHT-TT-------CEEEEEES-HHHHHHHHH
T ss_pred ecCcCCHHHHHHHhc-cC-------CEEEEEeCCHHHHHHHHh
Confidence 567888888877776 22 379999999998776654
No 124
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=22.89 E-value=1e+02 Score=24.66 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=42.6
Q ss_pred CCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC-CcccEEEeecCccCC
Q 029161 44 SGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT-SQIDFAFDDADIIEE 116 (198)
Q Consensus 44 ~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~-~~iD~af~Gad~Vd~ 116 (198)
.|.+||| |.|..-..+|+.+...- -++.++..+..........+++...+.+. .+.|+.+.-+..-+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG-----~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~ 104 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG-----MRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPE 104 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT------EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTT
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC-----ceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccc
Confidence 4677766 99999999999998641 25777777777655444555543334332 247777777665443
No 125
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=22.73 E-value=72 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=22.7
Q ss_pred CCCCCEEEE----CcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 42 ITSGMVVGL----GSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 42 I~~g~~IgL----gsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
++...++.+ .||+|..++++.|.+. |. ..|.++|
T Consensus 150 ~~~~~vllvDDV~TTGaTl~~~~~~L~~~---Ga-~~V~~~~ 187 (190)
T TIGR00201 150 FQGRNIVLVDDVVTTGATLHEIARLLLEL---GA-ASVQVWT 187 (190)
T ss_pred CCCCEEEEEeeeeccHHHHHHHHHHHHHc---CC-CEEEEEE
Confidence 443456665 5999999999999763 22 3566654
No 126
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.44 E-value=6.8e+02 Score=23.81 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=37.2
Q ss_pred ccCCCCCEEEECcchhH---HHHHHHHHHHhhcCCCCCeEEEcCc----H----HHHHHHHHcCCCEEEcCC
Q 029161 40 TYITSGMVVGLGSGQAS---AMAIEYMGRQLRAGALKDVIGIPTS----V----ASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 40 ~~I~~g~~IgLgsGST~---~~la~~L~~~~~~~~l~~itvVTnS----~----~~a~~l~~~gi~v~~l~~ 100 (198)
.-+.+--.-..|.||++ ..++++|++++++... +-.+.|+. . -++.++++.|||++.+..
T Consensus 302 G~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgV-DAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 302 GELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGV-DAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred ccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCC-CEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 33444445556888776 4577788877776554 55555522 2 234567789999876543
No 127
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=22.33 E-value=3.7e+02 Score=22.02 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=35.4
Q ss_pred CCCC-CEEEECcc-----hhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCCCcccEEEeecCc
Q 029161 42 ITSG-MVVGLGSG-----QASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDADI 113 (198)
Q Consensus 42 I~~g-~~IgLgsG-----ST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~iD~af~Gad~ 113 (198)
.+.| +++.|-+| ++..++.+++.+. .. ++.+||.=......++..|+++..-+. .-++.|...++
T Consensus 68 ~~~g~~V~~L~~GDP~~~~~~~~l~~~~~~~----g~-~veviPGiSS~~aa~a~~g~~l~~~~~--~~~~~~~~~~g 138 (229)
T TIGR01465 68 HREGKLVVRLHTGDPSIYGAIAEQMQLLEAL----GI-PYEVVPGVSSFFAAAAALGAELTVPEV--SQTVILTRAEG 138 (229)
T ss_pred HHCCCeEEEEeCcCccccccHHHHHHHHHHC----CC-CEEEECChhHHHHHHHHcCCCccccCC--ccEEEEEeccC
Confidence 3334 56666666 3344555555432 22 688888655555556778888653222 23445544444
No 128
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=22.22 E-value=1.2e+02 Score=24.26 Aligned_cols=94 Identities=16% Similarity=0.261 Sum_probs=51.0
Q ss_pred EECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHH-H---HHHHHHcCCCEEEcC--------------------CCC--
Q 029161 49 GLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVA-S---ANEAAVAGIPLDQYR--------------------DTS-- 102 (198)
Q Consensus 49 gLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~-~---a~~l~~~gi~v~~l~--------------------~~~-- 102 (198)
|||||-|+.. +.|.+....+ .++-||.|.+. + +..+.+.|+++..+. ..+
T Consensus 8 fLGsGKTTli--~~ll~~~~~~--~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~ 83 (178)
T PF02492_consen 8 FLGSGKTTLI--NHLLKRNRQG--ERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEE 83 (178)
T ss_dssp STTSSHHHHH--HHHHHHHTTT--S-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHG
T ss_pred CCCCCHHHHH--HHHHHHhcCC--ceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCC
Confidence 5899988762 3443211111 37999999876 2 345666777766542 234
Q ss_pred cccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccc
Q 029161 103 QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYK 157 (198)
Q Consensus 103 ~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~ 157 (198)
++|..|+=+.|+.. -..++. .+..+.+ . -.-+.+|.++|...|.
T Consensus 84 ~~d~IiIE~sG~a~-p~~l~~-------~~~~~~~-~--~~~~~iI~vVDa~~~~ 127 (178)
T PF02492_consen 84 RPDRIIIETSGLAD-PAPLIL-------QDPPLKE-D--FRLDSIITVVDATNFD 127 (178)
T ss_dssp C-SEEEEEEECSSG-GGGHHH-------HSHHHHH-H--ESESEEEEEEEGTTHG
T ss_pred CcCEEEECCccccc-cchhhh-------ccccccc-c--ccccceeEEecccccc
Confidence 68998887777633 111100 0122221 1 1236799999998874
No 129
>PRK14694 putative mercuric reductase; Provisional
Probab=22.04 E-value=2.6e+02 Score=25.83 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=34.5
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc-------HHHH----HHHHHcCCCEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS-------VASA----NEAAVAGIPLD 96 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS-------~~~a----~~l~~~gi~v~ 96 (198)
+..++.+|+|-+-.++|..|.+.- .++|+++.+ -... ..+.+.|+++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g-----~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLG-----SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-----CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 467899999999999999998652 479999875 2222 24456777654
No 130
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=22.03 E-value=3.9e+02 Score=23.33 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=34.5
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhc-CCCCCeEEEcCcH-------HH----HHHHHHcCCCEEE
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRA-GALKDVIGIPTSV-------AS----ANEAAVAGIPLDQ 97 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~-~~l~~itvVTnS~-------~~----a~~l~~~gi~v~~ 97 (198)
..++.+|+|-+-.++|..|.+..+. +...++|+++++- .. ...+++.|++++.
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~ 210 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHE 210 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 3678889999999999999865432 2113788885531 11 2245667877653
No 131
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=21.75 E-value=2.7e+02 Score=25.47 Aligned_cols=48 Identities=19% Similarity=0.092 Sum_probs=34.7
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHH------------HHHHHHHcCCCEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVA------------SANEAAVAGIPLD 96 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~------------~a~~l~~~gi~v~ 96 (198)
+..++.+|+|-+-.++|..|.+.- .++|+++.+-. ....+.+.|+++.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g-----~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERG-----LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-----CcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEE
Confidence 467889999999999999997642 37999986532 2234556777755
No 132
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=21.60 E-value=1.3e+02 Score=26.94 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=31.3
Q ss_pred hHHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHH
Q 029161 14 SSRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEY 62 (198)
Q Consensus 14 ~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~ 62 (198)
+|+..+.+.+...+.+++.+ ++....+.++..||++....+-.
T Consensus 81 ~s~~~~~~~~~~~~le~~la------~~~g~~~~~~~~SG~~An~~ai~ 123 (406)
T PRK13393 81 GTRNISGTNHYHVLLEAELA------DLHGKEAALLFTSGYVSNWAALS 123 (406)
T ss_pred ccccccCChHHHHHHHHHHH------HHhCCCcEEEeCCcHHHHHHHHH
Confidence 34444444556677778888 77776789999999988776665
No 133
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.44 E-value=1.7e+02 Score=19.76 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHHhccccccccCCCCCEEEE
Q 029161 20 NGSSVLFRAAKHTVTFLIVDTYITSGMVVGL 50 (198)
Q Consensus 20 ~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgL 50 (198)
...+.-+.+|+.-. .+++||++|+.
T Consensus 52 ~~~~~ie~~AR~~l------gm~~~~E~v~~ 76 (80)
T PF04977_consen 52 NDPDYIEKVAREKL------GMVKPGEIVFK 76 (80)
T ss_pred CCHHHHHHHHHHHc------CCcCCCCEEEe
Confidence 45667778899889 99999999875
No 134
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.36 E-value=1.9e+02 Score=21.03 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCcH-----HHHHHHHHcCCC
Q 029161 57 AMAIEYMGRQLRAGALKDVIGIPTSV-----ASANEAAVAGIP 94 (198)
Q Consensus 57 ~~la~~L~~~~~~~~l~~itvVTnS~-----~~a~~l~~~gi~ 94 (198)
.+++++|.++. +.+.++||+- +.+..|...|++
T Consensus 20 ~e~l~~L~~~g-----~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRERG-----KPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHHTT-----SEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcC-----CCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 44455554431 3677777774 344455666765
No 135
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=21.23 E-value=1.5e+02 Score=26.56 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=28.7
Q ss_pred chHHhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHH-HHHHHH
Q 029161 13 DSSRALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAM-AIEYMG 64 (198)
Q Consensus 13 ~~~~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~-la~~L~ 64 (198)
++|+.+.-+.+...+..++.+ ++....+.|.+++|++... ++..|.
T Consensus 81 ~~s~~~~~~~~~~~~Le~~la------~~~g~~~~i~~~sG~~a~~~~i~~l~ 127 (410)
T PRK13392 81 GGTRNISGTSHPHVLLERELA------DLHGKESALLFTSGYVSNDAALSTLG 127 (410)
T ss_pred chhhhcccChHHHHHHHHHHH------HHhCCCCEEEECcHHHHHHHHHHHHh
Confidence 345555544444556666666 6666568999999987654 334344
No 136
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=21.22 E-value=3.1e+02 Score=19.83 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.9
Q ss_pred eEEEcCcHHHHHHHH-HcCCCEEEcCC
Q 029161 75 VIGIPTSVASANEAA-VAGIPLDQYRD 100 (198)
Q Consensus 75 itvVTnS~~~a~~l~-~~gi~v~~l~~ 100 (198)
..|.||+-.....+. ..|+|++.+.+
T Consensus 67 ~~VaT~D~~Lr~~lr~~~GvPvi~l~~ 93 (101)
T PF04900_consen 67 YIVATQDKELRRRLRKIPGVPVIYLRR 93 (101)
T ss_pred EEEEecCHHHHHHHhcCCCCCEEEEEC
Confidence 889999999999887 88999988764
No 137
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.09 E-value=82 Score=26.30 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=25.3
Q ss_pred ccCCCCCEEE----ECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 40 TYITSGMVVG----LGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 40 ~~I~~g~~Ig----LgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
.-|++-+++. ||||.|..++.+.|..|.. +.++++|
T Consensus 89 ~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a----~sv~i~t 128 (178)
T COG0634 89 EDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGA----KSVRIAT 128 (178)
T ss_pred cCCCCCeEEEEecccccChhHHHHHHHHHhCCC----CeEEEEE
Confidence 4556667765 5899999999999987621 3455554
No 138
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.01 E-value=1.7e+02 Score=25.86 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=33.2
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
+...+|++++.+.++ +.+...-.|..|.|+ ++...++......+.| ...+-++|.
T Consensus 57 ~Lt~eEr~~v~~~~~------~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G-ad~vlv~~P 112 (309)
T cd00952 57 TLTWEEKQAFVATVV------ETVAGRVPVFVGATTLNTRDTIARTRALLDLG-ADGTMLGRP 112 (309)
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC-CCEEEECCC
Confidence 455789999999999 777655667778875 3344444333221223 235666654
No 139
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=20.86 E-value=2.8e+02 Score=25.37 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=27.0
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+..++.+|+|-+..++|..|.++- .++|++..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g-----~~Vtli~~~ 198 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLG-----SEVTILQRS 198 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-----CcEEEEEcC
Confidence 467889999999999999998642 379999865
No 140
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=20.83 E-value=2.5e+02 Score=23.40 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=26.2
Q ss_pred HHHHHHhccccccccCCCCCEEEEC-cchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 27 RAAKHTVTFLIVDTYITSGMVVGLG-SGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 27 ~IA~~Aa~~~~~~~~I~~g~~IgLg-sGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
.+.+... +.+++|++|.+- ...++.+..+.|.+.+++ ++.++||=+
T Consensus 175 ~~~~~v~------~~~~~g~IiLlHd~~~~t~~aL~~ii~~lk~---~Gy~fvtl~ 221 (224)
T TIGR02884 175 YAYKQIM------KKIHPGAILLLHAVSKDNAEALDKIIKDLKE---QGYTFKSLD 221 (224)
T ss_pred HHHHHHH------hcCCCCcEEEEECCCCCHHHHHHHHHHHHHH---CCCEEEEhH
Confidence 3555566 778899998884 333333344444444443 467777643
No 141
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.81 E-value=2.9e+02 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=26.7
Q ss_pred HHHHHHHhccccccccCCCCCEEEECcc----hhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 26 FRAAKHTVTFLIVDTYITSGMVVGLGSG----QASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 26 ~~IA~~Aa~~~~~~~~I~~g~~IgLgsG----ST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
..|.+.+. +.+++|++|.+-.| .|+..+ +.|.+.+++ ++.++||=
T Consensus 139 ~~i~~~~~------~~~~~g~Iil~Hd~~~~~~t~~~l-~~~i~~l~~---~Gy~~vtl 187 (191)
T TIGR02764 139 ESIVDRVV------KNTKPGDIILLHASDSAKQTVKAL-PTIIKKLKE---KGYEFVTI 187 (191)
T ss_pred HHHHHHHH------hcCCCCCEEEEeCCCCcHhHHHHH-HHHHHHHHH---CCCEEEEH
Confidence 44677777 88899998888622 233333 444444443 35666653
No 142
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=20.69 E-value=82 Score=26.67 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.1
Q ss_pred CEEEECcchhHHHHHHHHHHH
Q 029161 46 MVVGLGSGQASAMAIEYMGRQ 66 (198)
Q Consensus 46 ~~IgLgsGST~~~la~~L~~~ 66 (198)
|+|.||+|+.-..+|.+|++.
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~ 22 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEA 22 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHhhC
Confidence 689999999999999999864
No 143
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=20.40 E-value=73 Score=25.89 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=18.5
Q ss_pred CCCCCEEEE----CcchhHHHHHHHHHHH
Q 029161 42 ITSGMVVGL----GSGQASAMAIEYMGRQ 66 (198)
Q Consensus 42 I~~g~~IgL----gsGST~~~la~~L~~~ 66 (198)
++.-.++.+ +||+|..++++.|.+.
T Consensus 95 v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~ 123 (181)
T PRK09162 95 LKGRTVLVVDDILDEGHTLAAIRDRCLEM 123 (181)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHHhC
Confidence 443445554 7999999999999764
No 144
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=20.04 E-value=91 Score=25.00 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=18.1
Q ss_pred CCCCCEEE----ECcchhHHHHHHHHHHH
Q 029161 42 ITSGMVVG----LGSGQASAMAIEYMGRQ 66 (198)
Q Consensus 42 I~~g~~Ig----LgsGST~~~la~~L~~~ 66 (198)
++...+|. ++||.|..++++.|.+.
T Consensus 82 ~~gk~vlivDDii~TG~Tl~~~~~~l~~~ 110 (166)
T TIGR01203 82 IKGKDVLIVEDIVDTGLTLQYLLDLLKAR 110 (166)
T ss_pred CCCCEEEEEeeeeCcHHHHHHHHHHHHHC
Confidence 44334554 47999999999999754
Done!