Query 029161
Match_columns 198
No_of_seqs 163 out of 1067
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l7o_A Ribose-5-phosphate isom 100.0 4.3E-45 1.5E-49 309.4 16.2 158 22-194 2-160 (225)
2 2pjm_A Ribose-5-phosphate isom 100.0 7E-44 2.4E-48 302.1 17.8 158 22-195 4-164 (226)
3 3kwm_A Ribose-5-phosphate isom 100.0 1.9E-44 6.3E-49 305.3 13.7 159 16-194 5-165 (224)
4 3hhe_A Ribose-5-phosphate isom 100.0 1.2E-43 4.1E-48 304.9 18.1 163 17-194 21-188 (255)
5 4gmk_A Ribose-5-phosphate isom 100.0 2.1E-43 7.3E-48 299.0 17.7 158 22-194 5-163 (228)
6 3uw1_A Ribose-5-phosphate isom 100.0 4.6E-44 1.6E-48 305.2 12.9 154 22-194 12-171 (239)
7 1lk5_A D-ribose-5-phosphate is 100.0 9.6E-43 3.3E-47 295.6 17.2 159 22-194 4-164 (229)
8 2f8m_A Ribose 5-phosphate isom 100.0 1.9E-42 6.5E-47 296.3 16.7 160 22-193 10-175 (244)
9 3ixq_A Ribose-5-phosphate isom 100.0 4.3E-42 1.5E-46 290.8 17.9 161 18-195 1-164 (226)
10 1m0s_A Ribose-5-phosphate isom 100.0 5.8E-42 2E-46 289.2 15.0 153 22-193 4-159 (219)
11 1uj6_A Ribose 5-phosphate isom 100.0 2.4E-41 8.3E-46 286.6 17.7 161 18-193 2-163 (227)
12 1xtz_A Ribose-5-phosphate isom 100.0 3.8E-41 1.3E-45 291.1 14.2 161 21-194 18-191 (264)
13 1o8b_A Ribose 5-phosphate isom 100.0 6.6E-42 2.2E-46 288.8 7.0 153 22-193 4-158 (219)
14 1vb5_A Translation initiation 99.4 5.1E-12 1.7E-16 109.2 12.5 134 19-170 90-238 (276)
15 3ecs_A Translation initiation 98.2 1.3E-05 4.4E-10 70.5 11.1 128 24-169 107-251 (315)
16 2w48_A Sorbitol operon regulat 98.1 4.9E-06 1.7E-10 72.0 6.2 90 22-116 89-217 (315)
17 3a11_A Translation initiation 98.0 0.00011 3.9E-09 64.9 13.7 129 23-170 126-271 (338)
18 2o0m_A Transcriptional regulat 98.0 1.8E-06 6.3E-11 75.8 1.7 89 23-115 122-247 (345)
19 1poi_B Glutaconate coenzyme A- 97.8 4E-05 1.4E-09 65.5 8.0 114 24-161 7-161 (260)
20 2yvk_A Methylthioribose-1-phos 97.8 7E-05 2.4E-09 67.2 9.8 130 22-170 157-314 (374)
21 1t5o_A EIF2BD, translation ini 97.7 0.00032 1.1E-08 62.4 11.8 128 23-170 131-285 (351)
22 1t9k_A Probable methylthioribo 97.7 0.00026 8.8E-09 62.9 10.7 130 22-170 132-289 (347)
23 2a0u_A Initiation factor 2B; S 97.6 0.00021 7.2E-09 64.3 9.7 129 23-170 154-318 (383)
24 3d3u_A 4-hydroxybutyrate COA-t 97.6 0.00015 5.3E-09 65.9 8.4 54 21-86 192-245 (439)
25 3rrl_A Succinyl-COA:3-ketoacid 97.3 0.00079 2.7E-08 56.7 8.8 44 29-82 11-57 (235)
26 3rrl_B Succinyl-COA:3-ketoacid 97.3 7.9E-05 2.7E-09 61.8 1.9 107 25-155 2-143 (207)
27 1k6d_A Acetate COA-transferase 97.3 0.00095 3.2E-08 55.3 8.2 44 29-82 8-54 (220)
28 3cdk_A Succinyl-COA:3-ketoacid 97.1 0.00081 2.8E-08 56.6 6.7 44 29-82 11-57 (241)
29 3d3u_A 4-hydroxybutyrate COA-t 96.8 0.0033 1.1E-07 57.0 7.9 116 24-155 9-160 (439)
30 3nze_A Putative transcriptiona 96.7 0.0013 4.5E-08 55.9 4.2 51 23-79 37-87 (267)
31 3qli_A Coenzyme A transferase; 96.6 0.011 3.9E-07 54.1 10.1 117 24-154 24-183 (455)
32 3kv1_A Transcriptional repress 96.5 0.0013 4.6E-08 55.8 3.2 50 24-79 37-86 (267)
33 3gk7_A 4-hydroxybutyrate COA-t 96.4 0.0068 2.3E-07 55.5 7.3 113 24-153 9-157 (448)
34 1xr4_A Putative citrate lyase 96.3 0.022 7.6E-07 52.8 10.1 115 29-153 49-206 (509)
35 3eh7_A 4-hydroxybutyrate COA-t 96.2 0.023 8E-07 51.6 9.5 115 24-154 13-162 (434)
36 3efb_A Probable SOR-operon reg 96.1 0.0027 9.3E-08 53.8 2.8 53 22-79 40-92 (266)
37 2oas_A ATOA, 4-hydroxybutyrate 96.1 0.019 6.4E-07 52.2 8.4 108 29-153 9-152 (436)
38 2g39_A Acetyl-COA hydrolase; c 96.0 0.017 5.8E-07 53.4 8.2 115 25-154 14-167 (497)
39 2gnp_A Transcriptional regulat 95.9 0.0045 1.5E-07 52.4 3.4 50 24-79 39-88 (266)
40 2nvv_A Acetyl-COA hydrolase/tr 95.9 0.011 3.9E-07 54.7 6.4 112 29-154 8-162 (506)
41 2ahu_A Putative enzyme YDIF; C 95.8 0.03 1E-06 52.2 8.8 52 25-82 14-70 (531)
42 4eu9_A Succinyl-COA:acetate co 95.7 0.021 7.1E-07 52.9 7.3 118 23-154 11-171 (514)
43 2hj0_A Putative citrate lyase, 95.7 0.048 1.7E-06 50.6 9.6 113 28-154 51-210 (519)
44 2okg_A Central glycolytic gene 95.3 0.0057 1.9E-07 51.4 1.9 51 24-79 38-88 (255)
45 1w2w_B 5-methylthioribose-1-ph 95.1 0.034 1.2E-06 45.3 5.9 59 104-170 52-113 (191)
46 2r5f_A Transcriptional regulat 95.1 0.011 3.8E-07 49.9 2.9 51 24-79 39-91 (264)
47 1xr4_A Putative citrate lyase 95.0 0.31 1.1E-05 45.0 12.7 122 23-160 248-424 (509)
48 1stz_A Heat-inducible transcri 93.9 0.0084 2.9E-07 52.7 -0.6 51 20-89 97-148 (338)
49 3k6m_A Succinyl-COA:3-ketoacid 93.5 0.15 5E-06 47.0 7.0 110 22-154 260-405 (481)
50 2ahu_A Putative enzyme YDIF; C 93.4 0.41 1.4E-05 44.5 9.8 110 24-153 287-418 (531)
51 2hj0_A Putative citrate lyase, 93.3 0.49 1.7E-05 43.8 10.3 38 23-66 251-294 (519)
52 3k6m_A Succinyl-COA:3-ketoacid 89.1 0.38 1.3E-05 44.3 4.8 43 29-81 7-52 (481)
53 1poi_A Glutaconate coenzyme A- 88.8 0.35 1.2E-05 41.9 4.1 38 40-81 12-52 (317)
54 3qli_A Coenzyme A transferase; 84.4 1 3.6E-05 41.1 4.9 47 22-80 218-264 (455)
55 2bkx_A Glucosamine-6-phosphate 82.6 1.6 5.4E-05 35.5 4.9 52 25-78 9-64 (242)
56 1fs5_A Glucosamine-6-phosphate 82.5 0.79 2.7E-05 38.0 3.0 34 45-78 34-69 (266)
57 3gk7_A 4-hydroxybutyrate COA-t 82.0 1.2 4.1E-05 40.6 4.3 49 21-81 191-239 (448)
58 2oas_A ATOA, 4-hydroxybutyrate 81.8 0.91 3.1E-05 41.0 3.4 46 22-79 187-232 (436)
59 2ri0_A Glucosamine-6-phosphate 81.6 0.84 2.9E-05 37.0 2.8 51 25-79 10-61 (234)
60 3eh7_A 4-hydroxybutyrate COA-t 81.2 1.4 4.7E-05 39.9 4.4 49 21-81 195-243 (434)
61 1ne7_A Glucosamine-6-phosphate 77.8 1.8 6.1E-05 36.6 3.7 35 46-80 35-71 (289)
62 3fwz_A Inner membrane protein 73.9 12 0.0004 27.3 7.0 48 45-97 8-55 (140)
63 1ucr_A Protein DSVD; dissimila 69.7 0.2 6.7E-06 35.3 -3.5 33 22-59 32-64 (78)
64 3ix7_A Uncharacterized protein 68.0 11 0.00038 28.6 5.8 69 24-100 53-124 (134)
65 3c85_A Putative glutathione-re 60.6 33 0.0011 25.7 7.4 50 44-97 39-88 (183)
66 3l9w_A Glutathione-regulated p 57.3 51 0.0017 29.0 9.0 49 45-98 5-53 (413)
67 1y89_A DEVB protein; structura 55.2 7.5 0.00026 31.7 2.9 21 45-65 30-50 (238)
68 3llv_A Exopolyphosphatase-rela 54.8 54 0.0019 23.3 8.6 48 45-97 7-54 (141)
69 3j20_B 30S ribosomal protein S 51.4 95 0.0032 25.0 9.9 85 22-112 48-158 (202)
70 3i8o_A KH domain-containing pr 49.3 34 0.0012 26.2 5.7 42 54-101 92-133 (142)
71 4eu9_A Succinyl-COA:acetate co 48.2 29 0.001 31.6 6.0 36 40-79 258-293 (514)
72 2nvv_A Acetyl-COA hydrolase/tr 43.1 19 0.00063 33.1 3.8 51 21-80 224-284 (506)
73 3dfz_A SIRC, precorrin-2 dehyd 40.8 78 0.0027 25.6 6.9 37 42-83 29-65 (223)
74 1kol_A Formaldehyde dehydrogen 40.3 1.5E+02 0.005 25.1 9.0 68 41-112 182-263 (398)
75 4es6_A Uroporphyrinogen-III sy 39.4 43 0.0015 26.8 5.1 55 44-100 185-239 (254)
76 2g39_A Acetyl-COA hydrolase; c 39.4 19 0.00066 32.9 3.3 49 22-80 230-288 (497)
77 1poi_A Glutaconate coenzyme A- 37.5 31 0.0011 29.5 4.1 43 103-153 171-213 (317)
78 1jr2_A Uroporphyrinogen-III sy 36.7 52 0.0018 26.9 5.4 52 44-96 210-261 (286)
79 4df3_A Fibrillarin-like rRNA/T 36.6 34 0.0011 28.0 4.0 42 42-89 75-119 (233)
80 2dph_A Formaldehyde dismutase; 36.4 1.8E+02 0.0063 24.6 9.0 69 41-113 182-264 (398)
81 3css_A 6-phosphogluconolactona 36.2 21 0.00071 29.6 2.8 21 45-65 38-58 (267)
82 3mvn_A UDP-N-acetylmuramate:L- 36.1 25 0.00085 26.6 3.0 36 24-66 124-160 (163)
83 3tqh_A Quinone oxidoreductase; 34.6 1.5E+02 0.0052 24.2 8.0 67 40-112 148-224 (321)
84 3phh_A Shikimate dehydrogenase 34.3 62 0.0021 27.0 5.5 60 46-110 120-179 (269)
85 4ej6_A Putative zinc-binding d 33.6 2.1E+02 0.0073 24.0 9.0 68 41-112 179-262 (370)
86 3l4b_C TRKA K+ channel protien 33.5 1.6E+02 0.0055 22.5 8.1 46 47-97 3-49 (218)
87 3upu_A ATP-dependent DNA helic 33.3 98 0.0034 27.1 6.9 51 40-94 39-97 (459)
88 3s5o_A 4-hydroxy-2-oxoglutarat 32.8 90 0.0031 26.2 6.3 56 19-82 63-120 (307)
89 3jv7_A ADH-A; dehydrogenase, n 32.0 1.6E+02 0.0056 24.2 7.8 68 41-112 168-248 (345)
90 3p9z_A Uroporphyrinogen III co 31.9 61 0.0021 25.7 4.9 47 44-96 161-207 (229)
91 1id1_A Putative potassium chan 31.6 1.4E+02 0.0048 21.4 6.6 49 44-97 3-55 (153)
92 3fpc_A NADP-dependent alcohol 30.6 2.3E+02 0.0079 23.4 8.7 69 41-113 163-245 (352)
93 1vi6_A 30S ribosomal protein S 30.3 2.2E+02 0.0074 23.0 8.9 85 22-112 52-162 (208)
94 3mw8_A Uroporphyrinogen-III sy 30.3 52 0.0018 26.0 4.2 55 45-100 173-227 (240)
95 3ip1_A Alcohol dehydrogenase, 29.7 2.6E+02 0.0089 23.7 9.5 69 41-113 210-292 (404)
96 4a2c_A Galactitol-1-phosphate 29.6 1.9E+02 0.0064 23.7 7.7 69 40-112 156-238 (346)
97 4gek_A TRNA (CMO5U34)-methyltr 29.5 30 0.001 28.2 2.6 53 26-89 58-113 (261)
98 1w3i_A EDA, 2-keto-3-deoxy glu 28.8 1.1E+02 0.0036 25.5 6.0 54 19-82 48-102 (293)
99 3uog_A Alcohol dehydrogenase; 28.3 2E+02 0.0069 24.0 7.8 68 40-112 185-266 (363)
100 1lss_A TRK system potassium up 28.2 1.5E+02 0.005 20.4 7.9 45 47-96 7-52 (140)
101 1vl1_A 6PGL, 6-phosphogluconol 28.1 22 0.00075 29.0 1.5 22 44-65 45-66 (232)
102 2g1u_A Hypothetical protein TM 28.1 59 0.002 23.7 3.9 47 45-96 20-67 (155)
103 1h2b_A Alcohol dehydrogenase; 28.0 2.6E+02 0.0089 23.2 8.7 69 41-113 183-264 (359)
104 3two_A Mannitol dehydrogenase; 27.6 1.5E+02 0.0051 24.5 6.8 67 41-113 173-244 (348)
105 3u5c_A 40S ribosomal protein S 27.5 2.7E+02 0.0092 23.2 8.5 84 22-111 53-163 (252)
106 2nuw_A 2-keto-3-deoxygluconate 27.1 99 0.0034 25.7 5.5 54 19-82 48-102 (288)
107 2wns_A Orotate phosphoribosylt 26.8 63 0.0022 25.4 4.0 58 42-100 108-170 (205)
108 3m5v_A DHDPS, dihydrodipicolin 26.1 91 0.0031 26.1 5.1 56 19-81 56-113 (301)
109 3iht_A S-adenosyl-L-methionine 26.0 32 0.0011 27.3 2.1 29 44-79 41-71 (174)
110 3flu_A DHDPS, dihydrodipicolin 26.0 73 0.0025 26.6 4.5 56 19-81 56-112 (297)
111 4gx0_A TRKA domain protein; me 25.8 1.1E+02 0.0036 27.5 5.8 49 44-97 127-176 (565)
112 2xzm_B RPS0E; ribosome, transl 25.7 2.8E+02 0.0096 22.8 9.3 83 23-111 50-160 (241)
113 1aj0_A DHPS, dihydropteroate s 24.9 94 0.0032 26.1 5.0 62 26-97 38-115 (282)
114 3qze_A DHDPS, dihydrodipicolin 24.5 88 0.003 26.5 4.7 57 18-81 71-128 (314)
115 4dnn_A Protein quaking, MQKI, 24.4 2.1 7E-05 28.2 -4.3 26 53-84 1-26 (56)
116 2ywr_A Phosphoribosylglycinami 24.4 1.5E+02 0.0052 23.5 6.0 48 47-98 4-57 (216)
117 2aee_A OPRT, oprtase, orotate 24.3 89 0.003 24.5 4.5 48 50-101 127-178 (211)
118 2r91_A 2-keto-3-deoxy-(6-phosp 24.3 92 0.0032 25.8 4.8 54 19-82 47-101 (286)
119 2ehh_A DHDPS, dihydrodipicolin 24.1 1E+02 0.0034 25.7 5.0 57 19-82 49-106 (294)
120 4eez_A Alcohol dehydrogenase 1 23.9 2.1E+02 0.0072 23.4 7.0 51 41-95 160-211 (348)
121 3re1_A Uroporphyrinogen-III sy 23.9 55 0.0019 26.6 3.3 53 45-99 194-246 (269)
122 3av3_A Phosphoribosylglycinami 23.9 1.2E+02 0.004 24.2 5.2 47 48-98 9-59 (212)
123 3l21_A DHDPS, dihydrodipicolin 23.9 83 0.0028 26.5 4.4 56 19-81 64-120 (304)
124 1tx2_A DHPS, dihydropteroate s 23.6 1.8E+02 0.0062 24.6 6.5 63 25-97 62-140 (297)
125 1f6k_A N-acetylneuraminate lya 23.4 94 0.0032 25.8 4.7 58 18-82 52-110 (293)
126 2yxg_A DHDPS, dihydrodipicolin 22.7 93 0.0032 25.8 4.5 57 19-82 49-106 (289)
127 2wkj_A N-acetylneuraminate lya 22.5 94 0.0032 26.1 4.5 57 19-82 60-117 (303)
128 3hvz_A Uncharacterized protein 22.4 49 0.0017 22.5 2.2 26 41-66 11-36 (78)
129 3e96_A Dihydrodipicolinate syn 22.3 1.2E+02 0.0042 25.4 5.3 55 19-80 61-115 (316)
130 3a5f_A Dihydrodipicolinate syn 21.9 1.1E+02 0.0037 25.4 4.8 57 19-82 50-107 (291)
131 3tak_A DHDPS, dihydrodipicolin 21.9 80 0.0027 26.3 3.9 56 19-81 50-106 (291)
132 3cpr_A Dihydrodipicolinate syn 21.9 1.1E+02 0.0037 25.7 4.8 57 19-82 65-122 (304)
133 2vns_A Metalloreductase steap3 21.7 1.6E+02 0.0056 22.7 5.6 61 47-112 31-92 (215)
134 2yci_X 5-methyltetrahydrofolat 21.7 1.7E+02 0.0058 24.3 5.9 62 26-97 34-105 (271)
135 2ojp_A DHDPS, dihydrodipicolin 21.3 97 0.0033 25.7 4.3 57 19-82 50-107 (292)
136 1f8f_A Benzyl alcohol dehydrog 21.3 3.5E+02 0.012 22.4 9.2 68 41-112 187-267 (371)
137 3h5d_A DHDPS, dihydrodipicolin 21.2 1.3E+02 0.0044 25.4 5.1 56 19-81 56-113 (311)
138 1xky_A Dihydrodipicolinate syn 21.0 1E+02 0.0035 25.8 4.4 57 19-82 61-118 (301)
139 3daq_A DHDPS, dihydrodipicolin 20.9 92 0.0031 25.9 4.1 56 19-81 51-107 (292)
140 2yzk_A OPRT, oprtase, orotate 20.9 60 0.0021 24.8 2.7 48 50-98 116-163 (178)
141 3si9_A DHDPS, dihydrodipicolin 20.8 88 0.003 26.5 4.0 56 19-81 71-127 (315)
142 1vdm_A Purine phosphoribosyltr 20.7 67 0.0023 23.5 2.9 17 50-66 93-109 (153)
143 3c8u_A Fructokinase; YP_612366 20.6 97 0.0033 23.6 3.9 26 25-56 8-37 (208)
144 3auf_A Glycinamide ribonucleot 20.5 1.9E+02 0.0064 23.4 5.8 50 47-98 25-78 (229)
No 1
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=4.3e-45 Score=309.37 Aligned_cols=158 Identities=25% Similarity=0.402 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~ 101 (198)
.++|++||++|+ ++|++||+||||||||+.+++++|.++.+.+.+ ++|+||||++++.++.++|++++.+++.
T Consensus 2 ~~~K~~iA~~A~------~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~-~i~~VttS~~t~~~l~~~Gi~l~~l~~~ 74 (225)
T 3l7o_A 2 EELKKIAGVRAA------QYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQALGIPLKSIDEV 74 (225)
T ss_dssp CHHHHHHHHHHH------TTCCTTCEEEECCSTTHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHHTCCBCCGGGS
T ss_pred hHHHHHHHHHHH------HhCCCCCEEEECCcHHHHHHHHHHHHhhhhcCC-CEEEEcCCHHHHHHHhccCceEEecCcc
Confidence 368999999999 999999999999999999999999987665555 7999999999999999999999999988
Q ss_pred CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHHHHHHH
Q 029161 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEI 180 (198)
Q Consensus 102 ~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~v~~~l 180 (198)
+++|++|||||+||+ +++++||+|+ |++|||+++.+|+++|+|+|+|||+++|| +|+||||+|++|.+|.++|
T Consensus 75 ~~iD~a~dGADevd~-~~~liKGgG~-----al~rEKiva~~A~~~iviaD~sK~~~~Lg~~plPvEV~p~a~~~v~~~l 148 (225)
T 3l7o_A 75 DSVDVTVDGADEVDP-NFNGIKGGGG-----ALLMEKIVGTLTKDYIWVVDESKMVDTLGAFRLPVEVVQYGAERLFREF 148 (225)
T ss_dssp SCEEEEEECCSEECT-TSCEECCTTS-----CHHHHHHHHHTEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHH
T ss_pred cccCEEEEcCCccCc-ccCeecCchh-----hhHHHHHHHHhCCeEEEEEecccchhhcCCCCEEEEEehhHHHHHHHHH
Confidence 899999999999999 8999999999 99999999999999999999999999998 6999999999999999999
Q ss_pred HhhcCCCceeEeCC
Q 029161 181 DDLFIGDAEVFSIP 194 (198)
Q Consensus 181 ~~lf~g~~~~~R~~ 194 (198)
+++ |+.+.||++
T Consensus 149 ~~l--G~~~~lR~~ 160 (225)
T 3l7o_A 149 EKK--GYKPSFREY 160 (225)
T ss_dssp HHT--TCCEEECEE
T ss_pred HHc--CCceEEEEc
Confidence 998 899999984
No 2
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=100.00 E-value=7e-44 Score=302.13 Aligned_cols=158 Identities=32% Similarity=0.487 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~ 101 (198)
.++|++||++|+ ++|++||+||||+|||+.+++++|.++.+.+.+ ++|+||||++++.++.++|++++.+.+.
T Consensus 4 ~~~K~~iA~~A~------~~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l-~itvVtnS~~~a~~l~~~gi~v~~l~~~ 76 (226)
T 2pjm_A 4 EDLKLKVAKEAV------KLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDEY 76 (226)
T ss_dssp HHHHHHHHHHHG------GGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTTC
T ss_pred HHHHHHHHHHHH------HHCCCCCEEEECCCHHHHHHHHHHHhhhhccCC-cEEEEeCcHHHHHHHHhcCCeEEeeccc
Confidence 689999999999 999999999999999999999999987544445 8999999999999999999999999987
Q ss_pred CcccEEEeecCccCCCC-cceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC--CcccEEEecCCHHHHHH
Q 029161 102 SQIDFAFDDADIIEEGT-LVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAE 178 (198)
Q Consensus 102 ~~iD~af~Gad~Vd~~~-~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg--~~ipvEV~p~~~~~v~~ 178 (198)
. +|++|||||+||+ + ++++||+|+ ++++||+++++|+++|+|+|+|||+++|| +|+||||+|++|.+|.+
T Consensus 77 ~-iD~afdGaDevd~-~t~~likGgg~-----al~rEKiva~~A~~~IviaD~sK~~~~Lg~~~~lPvEV~p~a~~~v~~ 149 (226)
T 2pjm_A 77 D-VDIAFDGADEVEE-TTLFLIKGGGG-----CHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEVIPSAYRVVIR 149 (226)
T ss_dssp C-CSEEEECCSEEET-TTCCEECCTTS-----CHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEEEECGGGHHHHHH
T ss_pred c-CCEEEEcCceecc-ccCceeeccch-----hhHHHHHHHHHhCcEEEEEecchhhhccCCCCCEEEEEehhHHHHHHH
Confidence 5 9999999999999 8 999999999 99999999999999999999999999999 79999999999999999
Q ss_pred HHHhhcCCCceeEeCCC
Q 029161 179 EIDDLFIGDAEVFSIPY 195 (198)
Q Consensus 179 ~l~~lf~g~~~~~R~~~ 195 (198)
+|+++ |+.+.||++.
T Consensus 150 ~l~~~--g~~~~lR~~~ 164 (226)
T 2pjm_A 150 ALSEM--GGEAVIRLGD 164 (226)
T ss_dssp HHHHT--TCEEEECBCS
T ss_pred HHHHc--CCceEEeecC
Confidence 99998 8899999863
No 3
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=100.00 E-value=1.9e-44 Score=305.27 Aligned_cols=159 Identities=21% Similarity=0.289 Sum_probs=148.4
Q ss_pred HhhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEE-EcCcHHHHHHHHHcCCC
Q 029161 16 RALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG-IPTSVASANEAAVAGIP 94 (198)
Q Consensus 16 ~~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itv-VTnS~~~a~~l~~~gi~ 94 (198)
++|++ .++|++||++|+ ++|++||+||||||||+.+++++|.++. +++|+ ||||++++.++.++|++
T Consensus 5 ~~~~~-~~~K~~iA~~A~------~~V~~g~~IglgsGST~~~~i~~L~~~~-----~~itv~VtnS~~~a~~l~~~gi~ 72 (224)
T 3kwm_A 5 KKNNQ-DELKKLAATEAA------KSITTEITLGVGTGSTVGFLIEELVNYR-----DKIKTVVSSSEDSTRKLKALGFD 72 (224)
T ss_dssp --CCH-HHHHHHHHHHHH------TTCCSSEEEEECCSHHHHHHHHHGGGCT-----TTEEEEEESCHHHHHHHHHTTCC
T ss_pred hhcCh-HHHHHHHHHHHH------HhCCCCCEEEECCcHHHHHHHHHHHhhc-----CceEEEECCcHHHHHHHHHcCCe
Confidence 35654 789999999999 9999999999999999999999998752 38999 99999999999999999
Q ss_pred EEEcCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCH
Q 029161 95 LDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNW 173 (198)
Q Consensus 95 v~~l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~ 173 (198)
++.+++.+++|++|||||+||+ +++++||+|+ +++|||+++.+|+++|+|+|+|||+++|| +|+||||+|++|
T Consensus 73 l~~l~~~~~iD~afdGADevd~-~~~liKGgg~-----al~rEKiva~~A~~~iviaD~sK~~~~Lg~~plPvEV~p~a~ 146 (224)
T 3kwm_A 73 VVDLNYAGEIDLYIDGADECNN-HKELIKGGGA-----ALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMAR 146 (224)
T ss_dssp BCCHHHHCSEEEEEECCSEECT-TSCEECCSSS-----CHHHHHHHHHTEEEEEEEEEGGGBCSSBCSSCEEEEECGGGH
T ss_pred EEecCccccccEEEECCCcccc-ccCeecCchh-----hHHHHHHHHHhcCcEEEEEeCchhhhhcCCCCeEEEEChHHH
Confidence 9999887899999999999999 8999999999 99999999999999999999999999998 799999999999
Q ss_pred HHHHHHHHhhcCCCceeEeCC
Q 029161 174 METAEEIDDLFIGDAEVFSIP 194 (198)
Q Consensus 174 ~~v~~~l~~lf~g~~~~~R~~ 194 (198)
.+|.++|.++ |+.+.||++
T Consensus 147 ~~v~~~l~~l--g~~~~lR~~ 165 (224)
T 3kwm_A 147 SYIARQIVKL--GGQPVYREQ 165 (224)
T ss_dssp HHHHHHHHHT--TCEEEECTT
T ss_pred HHHHHHHHHc--CCCeEEecC
Confidence 9999999998 889999973
No 4
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=100.00 E-value=1.2e-43 Score=304.94 Aligned_cols=163 Identities=21% Similarity=0.344 Sum_probs=149.9
Q ss_pred hhccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEE
Q 029161 17 ALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLD 96 (198)
Q Consensus 17 ~~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~ 96 (198)
+|++ .++|++||++|+ ++|++||+||||||||+.+++++|.++.++| + ++|+||||++++.+|.++|++++
T Consensus 21 ~m~~-~e~K~~iA~~A~------~~V~dg~vIgLGsGST~~~~i~~L~~~~~~g-l-~ItvVttS~~ta~~l~~~GI~l~ 91 (255)
T 3hhe_A 21 SMNV-QQLKKMAALKAL------EFVEDDMRLGIGSGSTVNEFIPLLGERVANG-L-RVTCVATSQYSEQLCHKFGVPIS 91 (255)
T ss_dssp --CH-HHHHHHHHHHHH------TTCCTTEEEEECCSHHHHHHHHHHHHHHHTT-C-CEEEEESSHHHHHHHHHTTCCBC
T ss_pred CCCH-HHHHHHHHHHHH------HhCCCCCEEEECCcHHHHHHHHHHHHhhccC-C-cEEEEcCCHHHHHHHHHcCCcEE
Confidence 5654 679999999999 9999999999999999999999999875543 4 79999999999999999999999
Q ss_pred EcCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHH
Q 029161 97 QYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWME 175 (198)
Q Consensus 97 ~l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~ 175 (198)
.+++..++|++|||||+||+ +++++||+|+ |++|||+++.+|+++|+|+|+|||+++|| +|+||||+|++|.+
T Consensus 92 ~l~~~~~iD~afdGADeVD~-~~~lIKGgG~-----al~rEKiva~~A~~~ivIaD~SK~v~~LG~~plPVEViP~a~~~ 165 (255)
T 3hhe_A 92 TLEKIPELDLDIDGADEIGP-EMTLIKGGGG-----ALLHEKIVASASRAMFVIADETKMVKTLGAFALPIEVNPFGIHA 165 (255)
T ss_dssp CTTTCCSBSEEEECCSEECG-GGCEECCTTS-----CHHHHHHHHHTBSCEEEEEEGGGBCSSSCSSCEEEEECSTTHHH
T ss_pred ecccccccCEEEECCCcccc-ccCeeeCchh-----hhHHHHHHHHhcCcEEEEEeCCCChhhhCCCCeEEEEchhHHHH
Confidence 99998899999999999999 8999999999 99999999999999999999999999998 79999999999999
Q ss_pred HHHHHHhhc----CCCceeEeCC
Q 029161 176 TAEEIDDLF----IGDAEVFSIP 194 (198)
Q Consensus 176 v~~~l~~lf----~g~~~~~R~~ 194 (198)
|.++|+++| .|+.+.||++
T Consensus 166 v~~~l~~~~~~~glgg~~~lR~~ 188 (255)
T 3hhe_A 166 TRIAIEKAADNLGLSGEITLRMN 188 (255)
T ss_dssp HHHHHHHHHHHHTCCSCEEECEE
T ss_pred HHHHHHhhhccccCCCeEEEeeC
Confidence 999999953 3779999974
No 5
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=100.00 E-value=2.1e-43 Score=299.01 Aligned_cols=158 Identities=25% Similarity=0.430 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~ 101 (198)
.+.|++.|++|+ +||++||+||||||||+.+++++|.++.+.+.+ +++.||+|.+++.+++++|+++..+++.
T Consensus 5 d~~K~~aa~~A~------~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~~ 77 (228)
T 4gmk_A 5 DELKQLVGTKAV------EWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDEV 77 (228)
T ss_dssp HHHHHHHHHHHG------GGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGGS
T ss_pred HHHHHHHHHHHH------HhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHHC
Confidence 567888999999 999999999999999999999999998776666 7999999999999999999999999998
Q ss_pred CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHHHHHHH
Q 029161 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEI 180 (198)
Q Consensus 102 ~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~v~~~l 180 (198)
.++|+||||||+||+ ++++|||||+ |++|||+++.+|+++|||+|+||++++|| +|+||||+|++|.+|.++|
T Consensus 78 ~~iD~~iDGADEvd~-~l~lIKGGGg-----al~rEKivA~~a~~fI~IaD~sK~v~~LG~fplPVEVip~a~~~v~~~l 151 (228)
T 4gmk_A 78 DHIDLTIDGADEISS-DFQGIKGGGA-----ALLYEKIVATKSNKNMWIVDESKMVDDLGQFPLPVEVIPYGSGTVFKRF 151 (228)
T ss_dssp SCEEEEEECCSEECT-TSCEECCTTS-----CHHHHHHHHHHEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHH
T ss_pred CccceEeccHHHhhh-chhhhhcchH-----HHHHHHHHHHhhhheEEEeccccccCccCCeeEEEEEehhhHHHHHHHH
Confidence 899999999999999 8999999999 99999999999999999999999999998 6999999999999999999
Q ss_pred HhhcCCCceeEeCC
Q 029161 181 DDLFIGDAEVFSIP 194 (198)
Q Consensus 181 ~~lf~g~~~~~R~~ 194 (198)
.++ |+.+.||+.
T Consensus 152 ~~l--G~~~~~R~~ 163 (228)
T 4gmk_A 152 EEK--GLNPEFRKN 163 (228)
T ss_dssp HHT--TCCEEECBC
T ss_pred HHc--CCceeeccc
Confidence 998 999999975
No 6
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=100.00 E-value=4.6e-44 Score=305.22 Aligned_cols=154 Identities=21% Similarity=0.341 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhccccccccCCC----CCEEEECcchhHHHHHHHHHHHhhcCCCCCeE-EEcCcHHHHHHHHHcCCCEE
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITS----GMVVGLGSGQASAMAIEYMGRQLRAGALKDVI-GIPTSVASANEAAVAGIPLD 96 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~----g~~IgLgsGST~~~la~~L~~~~~~~~l~~it-vVTnS~~~a~~l~~~gi~v~ 96 (198)
.++|+++|++|+ ++|+| ||+||||||||+.+++++|.++. ++++ +||||.+++.+|.++|++++
T Consensus 12 ~~~K~~aA~~A~------~~V~d~~~~g~vIGLGtGST~~~~i~~L~~~~-----~~i~~~V~tS~~t~~~~~~~Gi~l~ 80 (239)
T 3uw1_A 12 DELKRLVGEAAA------RYVTDNVPQGAVIGVGTGSTANCFIDALAAVK-----DRYRGAVSSSVATTERLKSHGIRVF 80 (239)
T ss_dssp HHHHHHHHHHHH------HHHHHHSCTTCEEEECCSHHHHHHHHHHHTTG-----GGSCEEEESSHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHH------HHhhccCcCCCEEEECccHHHHHHHHHHHhhh-----ccceEEeCCcHHHHHHHHHcCCcEE
Confidence 678999999999 88888 99999999999999999998763 2677 79999999999999999999
Q ss_pred EcCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHH
Q 029161 97 QYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWME 175 (198)
Q Consensus 97 ~l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~ 175 (198)
.+++.+++|++|||||+||+ +++++||||+ |++|||+++.+|+++|+|+|+||++++|| +|+||||+|++|.+
T Consensus 81 ~l~~~~~iD~a~DGADeVd~-~l~lIKGgGg-----al~rEKiva~~A~~~ivIaD~sK~v~~Lg~~plPVEViP~a~~~ 154 (239)
T 3uw1_A 81 DLNEIESLQVYVDGADEIDE-SGAMIKGGGG-----ALTREKIVASVAETFVCIADASKRVAMLGQFPLPVEVVPMARTA 154 (239)
T ss_dssp CGGGCSCEEEEEECCSEECT-TCCEECCSSS-----CHHHHHHHHHHEEEEEEEEEGGGBCSSBTSSCEEEEECGGGHHH
T ss_pred ecccccccCEEEECCcccCc-ccCEecCchH-----HHHHHHHHHHhCCcEEEEEecchhhhhcCCCCeEEEEChhHHHH
Confidence 99988899999999999999 8999999999 99999999999999999999999999998 69999999999999
Q ss_pred HHHHHHhhcCCCceeEeCC
Q 029161 176 TAEEIDDLFIGDAEVFSIP 194 (198)
Q Consensus 176 v~~~l~~lf~g~~~~~R~~ 194 (198)
|.++|.++ |+.+.||++
T Consensus 155 v~~~l~~l--G~~~~lR~~ 171 (239)
T 3uw1_A 155 IGRRLAAL--GGVPVLRVK 171 (239)
T ss_dssp HHHHHHHT--TCEEEECBC
T ss_pred HHHHHHHc--CCCeEEeec
Confidence 99999998 889999985
No 7
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=100.00 E-value=9.6e-43 Score=295.62 Aligned_cols=159 Identities=28% Similarity=0.469 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~ 101 (198)
.++|++||++|+ ++|+|||+||||+|||+.+++++|.++.+.+.++++|+||||++++.+|.+.|++++.++..
T Consensus 4 ~~~K~~IA~~Aa------~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~ 77 (229)
T 1lk5_A 4 EEMKKIAAKEAL------KFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQV 77 (229)
T ss_dssp HHHHHHHHHHHG------GGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGC
T ss_pred HHHHHHHHHHHH------HhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCc
Confidence 679999999999 99999999999999999999999987644333337999999999999998889999999877
Q ss_pred CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC--CcccEEEecCCHHHHHHH
Q 029161 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAEE 179 (198)
Q Consensus 102 ~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg--~~ipvEV~p~~~~~v~~~ 179 (198)
+++|++|+|||+||+ ++++++|+++ +++|||+++++|+++|+|+|||||+++|| +|+||||+|++|.+|.++
T Consensus 78 ~~~D~af~Gadgid~-~~g~~~~~~~-----a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~lPvEV~p~~~~~v~~~ 151 (229)
T 1lk5_A 78 DAIDVAVDGADEVDP-NLNLIKGRGA-----ALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMPVPIEVIPQAWKAIIEE 151 (229)
T ss_dssp SCEEEEEECCSEECT-TCCEECCTTS-----CHHHHHHHHHTEEEEEEEEEGGGBCSSTTSSCCEEEEECGGGHHHHHHH
T ss_pred ccCCEEEECCCeECC-CCCeecCHHH-----HHHHHHHHHHhcCCeEEEEchhhhhhhcCCCCCEEEEECcchHHHHHHH
Confidence 799999999999999 7899998877 99999999999999999999999999998 599999999999999999
Q ss_pred HHhhcCCCceeEeCC
Q 029161 180 IDDLFIGDAEVFSIP 194 (198)
Q Consensus 180 l~~lf~g~~~~~R~~ 194 (198)
|+++ |+.+.||++
T Consensus 152 l~~l--g~~~~~R~~ 164 (229)
T 1lk5_A 152 LSIF--NAKAELRMG 164 (229)
T ss_dssp GGGG--TCEEEECBC
T ss_pred HHHc--CCCeEEeec
Confidence 9998 899999974
No 8
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-42 Score=296.25 Aligned_cols=160 Identities=29% Similarity=0.460 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhccccccc-cCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCC
Q 029161 22 SSVLFRAAKHTVTFLIVDT-YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~-~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~ 100 (198)
.+.|++||++|+ + +|+|||+||||+|||+.+++++|.++.+.+.++++|+||||++++.+|.+.|++++.+..
T Consensus 10 ~~~K~~iA~~Aa------~~~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~ 83 (244)
T 2f8m_A 10 DSLKKIVAYKAV------DEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEK 83 (244)
T ss_dssp HHHHHHHHHHHH------HHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCCCS
T ss_pred HHHHHHHHHHHH------HHhCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEEecc
Confidence 468999999999 8 999999999999999999999998765444455799999999999999888999999987
Q ss_pred CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccc-cCCC--CcccEEEecCCHHHHH
Q 029161 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYK-GVLD--GSVPVLVQPVNWMETA 177 (198)
Q Consensus 101 ~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~-~~lg--~~ipvEV~p~~~~~v~ 177 (198)
..++|++|+|||+||+ +++++||+|+ +++|||+++++|+++|+|+|+|||+ ++|| +|+||||+|++|.+|.
T Consensus 84 ~~~iD~afdGaDeId~-~~glikg~g~-----Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~~~plPvEV~p~a~~~v~ 157 (244)
T 2f8m_A 84 HSNIDITIDGTDEIDL-NLNLIKGRGG-----ALVREKLVASSSSLLIIIGDESKLCTNGLGMTGAVPIEILTFGYEKII 157 (244)
T ss_dssp SCCBSEEEECCSEECT-TCCEECCTTS-----CHHHHHHHHHTBSCEEEEEEGGGBCSSCTTCSSCEEEEECSTTHHHHH
T ss_pred cCcCCEEEECCcccCC-CCCcccCHHH-----HHHHHHHHHHhhCcEEEEEECCccccccCCCCCcEEEEEcccHHHHHH
Confidence 6689999999999999 7999999888 9999998889999999999999999 9999 6999999999999999
Q ss_pred HHHHhhcC--CCceeEeC
Q 029161 178 EEIDDLFI--GDAEVFSI 193 (198)
Q Consensus 178 ~~l~~lf~--g~~~~~R~ 193 (198)
++|+++|. |+.+.||+
T Consensus 158 ~~l~~l~~~~G~~~~lR~ 175 (244)
T 2f8m_A 158 ENLLKIYTLKGCTYKIRK 175 (244)
T ss_dssp HHHTTSTTTTTCEEEECE
T ss_pred HHHHHHhhccCCceEEEE
Confidence 99999986 88999996
No 9
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.3e-42 Score=290.76 Aligned_cols=161 Identities=32% Similarity=0.490 Sum_probs=149.8
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
|+| .+.|+++|++|+ +||++||+||||||||+.+++++|+++.+.+.+ +++.||+|.+++.++.++|+++..
T Consensus 1 M~~-d~~K~~aa~~A~------~~V~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l-~i~~v~tS~~t~~~a~~~gi~l~~ 72 (226)
T 3ixq_A 1 MSN-EDLKLKVAKEAV------KLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVT 72 (226)
T ss_dssp -CC-HHHHHHHHHHHG------GGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCC
T ss_pred CCH-HHHHHHHHHHHH------HhCCCCCEEEeCcHHHHHHHHHHHHHhhhhcCC-eeEeecccHHHHHHHHhcCCCccc
Confidence 444 678999999999 999999999999999999999999998776666 699999999999999999999999
Q ss_pred cCCCCcccEEEeecCccC-CCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC--CcccEEEecCCHH
Q 029161 98 YRDTSQIDFAFDDADIIE-EGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWM 174 (198)
Q Consensus 98 l~~~~~iD~af~Gad~Vd-~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg--~~ipvEV~p~~~~ 174 (198)
+++. .+|+||||||+|| + ++++|||||+ |++|||+++.+|+++|+|+|+||++++|| +|+||||+|++|.
T Consensus 73 l~~~-~iDl~iDGADEvd~~-~l~lIKGGGg-----Al~rEKivA~~a~~~I~I~D~sK~v~~LG~~fplPVEVip~a~~ 145 (226)
T 3ixq_A 73 LDEY-DVDIAFDGADEVEET-TLFLIKGGGG-----CHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEVIPSAYR 145 (226)
T ss_dssp TTTC-CCSEEEECCSEEETT-TCCEECCTTS-----CHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEEEECGGGHH
T ss_pred cccc-cccEEEeCcchhccc-cceEEecchH-----HHHHHHHHHHHhhheEEEeccccchhhcCCCCCccEEEechHHH
Confidence 9987 6999999999998 5 6899999999 99999999999999999999999999998 6999999999999
Q ss_pred HHHHHHHhhcCCCceeEeCCC
Q 029161 175 ETAEEIDDLFIGDAEVFSIPY 195 (198)
Q Consensus 175 ~v~~~l~~lf~g~~~~~R~~~ 195 (198)
+|.++|.++ |+.+.||++.
T Consensus 146 ~v~~~l~~l--G~~~~~R~~~ 164 (226)
T 3ixq_A 146 VVIRALSEM--GGEAVIRLGD 164 (226)
T ss_dssp HHHHHHHHT--TCEEEECBCS
T ss_pred HHHHHHHHc--CCCceEEeec
Confidence 999999998 8999999854
No 10
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=100.00 E-value=5.8e-42 Score=289.18 Aligned_cols=153 Identities=25% Similarity=0.359 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEE-EcCcHHHHHHHHHcCCCEEEcCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG-IPTSVASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itv-VTnS~~~a~~l~~~gi~v~~l~~ 100 (198)
.++|++||++|+ ++|+|||+||||+|||+.+++++|.++ + .++|+ ||||+.++.+|.+.|++++.++.
T Consensus 4 ~~~K~~IA~~Aa------~~I~dg~~I~LdsGST~~~la~~L~~~-~----~~itv~VTnS~~~a~~l~~~gi~vi~l~~ 72 (219)
T 1m0s_A 4 LEMKKLAAQAAL------QYVKADRIVGVGSGSTVNCFIEALGTI-K----DKIQGAVAASKESEELLRKQGIEVFNAND 72 (219)
T ss_dssp HHHHHHHHHHHG------GGCCTTSEEEECCSHHHHHHHHHHHTT-G----GGSCEEEESSHHHHHHHHHTTCCBCCGGG
T ss_pred HHHHHHHHHHHH------HhCCCCCEEEEcChHHHHHHHHHHhcc-C----CCEEEEECChHHHHHHHHhCCCeEEEeCc
Confidence 689999999999 999999999999999999999999864 1 16999 99999999999888999999987
Q ss_pred CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC--CcccEEEecCCHHHHHH
Q 029161 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAE 178 (198)
Q Consensus 101 ~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg--~~ipvEV~p~~~~~v~~ 178 (198)
.+++|++|+|||+||+ ++++++|+++ +++|||+++++|+++|+|+|||||+++|| +|+||||+|++|.+|.+
T Consensus 73 ~~~~D~af~Gadgid~-~~g~~~~~~~-----a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~lPvEV~p~~~~~v~~ 146 (219)
T 1m0s_A 73 VSSLDIYVDGADEINP-QKMMIKGGGA-----ALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVEVIPMARSQVGR 146 (219)
T ss_dssp CSCEEEEEECCSEECT-TSCEECCTTS-----CHHHHHHHHHHEEEEEEEEEGGGBCSSTTSSSCEEEEECGGGHHHHHH
T ss_pred cccCCEEEECcCeECC-CCCeecCHHH-----HHHHHHHHHHhcCcEEEEEeCcHHhhccCCCCCEEEEECcchHHHHHH
Confidence 6799999999999999 7899998777 99999999999999999999999999998 59999999999999999
Q ss_pred HHHhhcCCCceeEeC
Q 029161 179 EIDDLFIGDAEVFSI 193 (198)
Q Consensus 179 ~l~~lf~g~~~~~R~ 193 (198)
+|+++ |+.+.||+
T Consensus 147 ~l~~l--g~~~~~R~ 159 (219)
T 1m0s_A 147 KLAAL--GGSPEYRE 159 (219)
T ss_dssp HHHHT--TCEEEECT
T ss_pred HHHHc--CCCcEeeC
Confidence 99998 89999995
No 11
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=100.00 E-value=2.4e-41 Score=286.62 Aligned_cols=161 Identities=34% Similarity=0.514 Sum_probs=146.8
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
++.+.++|++||++|+ ++|+|||+||||+|||+.+++++|.++.+.+.++++|+||||+.++.+|...|++++.
T Consensus 2 ~~~~~~~K~~IA~~Aa------~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 75 (227)
T 1uj6_A 2 ERPLESYKKEAAHAAI------AYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVD 75 (227)
T ss_dssp -CTTHHHHHHHHHHHH------TTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCC
T ss_pred CCchHHHHHHHHHHHH------HHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEEE
Confidence 3457899999999999 9999999999999999999999998764433333499999999999999988999999
Q ss_pred cCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHHH
Q 029161 98 YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMET 176 (198)
Q Consensus 98 l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~v 176 (198)
+.+ +++|++|+|||+||+ ++.+++|+|+ +++|||+++++|+++|+|+|+|||+++|| +|+||||+|++|.+|
T Consensus 76 l~~-~~~D~af~Gadgvd~-~~~~~~~~g~-----a~~kekiva~~a~~~ivlaD~sK~~~~lg~~~lPvEV~p~~~~~v 148 (227)
T 1uj6_A 76 LPP-EGVDLAIDGADEIAP-GLALIKGMGG-----ALLREKIVERVAKEFIVIADHTKKVPVLGRGPVPVEIVPFGYRAT 148 (227)
T ss_dssp CCT-TCEEEEEECCSEEEG-GGEEECCTTS-----CHHHHHHHHHTEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHH
T ss_pred cCC-CcCCEEEECCCccCc-cccEECCHHH-----HHHHHHHHHhccCCEEEEEEcchhccccCCCceeEEECcCHHHHH
Confidence 988 699999999999999 6889999888 99999999877999999999999999998 599999999999999
Q ss_pred HHHHHhhcCCCceeEeC
Q 029161 177 AEEIDDLFIGDAEVFSI 193 (198)
Q Consensus 177 ~~~l~~lf~g~~~~~R~ 193 (198)
.++|+++ |+.+.||+
T Consensus 149 ~~~l~~~--g~~~~~R~ 163 (227)
T 1uj6_A 149 LKAIADL--GGEPELRM 163 (227)
T ss_dssp HHHHHTT--TCCEEECE
T ss_pred HHHHHhh--CCCeEEEe
Confidence 9999998 89999996
No 12
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=291.06 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHhccccccc-cCC--CCCEEEECcchhHHHHHHHHHHHhhcCCCC----CeEEEcCcHHHHHHHHHcCC
Q 029161 21 GSSVLFRAAKHTVTFLIVDT-YIT--SGMVVGLGSGQASAMAIEYMGRQLRAGALK----DVIGIPTSVASANEAAVAGI 93 (198)
Q Consensus 21 ~~~~K~~IA~~Aa~~~~~~~-~I~--~g~~IgLgsGST~~~la~~L~~~~~~~~l~----~itvVTnS~~~a~~l~~~gi 93 (198)
..++|++||++|+ + +|+ |||+||||+|||+.+++++|.++.+.+.++ ++|+||||++++.+|.+.|+
T Consensus 18 ~~~~K~~IA~~Aa------~~~I~~~dg~~IgLgsGST~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~~~a~~l~~~gi 91 (264)
T 1xtz_A 18 LEDAKRAAAYRAV------DENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKL 91 (264)
T ss_dssp -CHHHHHHHHHHH------HHHCCTTTCCEEEECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH------HhccCCCCCCEEEEcChHHHHHHHHHHhHhhhccccccccCCEEEECCcHHHHHHHHHCCC
Confidence 4789999999999 8 999 999999999999999999998764322221 49999999999999998899
Q ss_pred CEEEcCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccc-cCCC--C--cccEEE
Q 029161 94 PLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYK-GVLD--G--SVPVLV 168 (198)
Q Consensus 94 ~v~~l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~-~~lg--~--~ipvEV 168 (198)
+++.+...+++|++|||||+||+ +++++||+|+ +++|||+++++|+++|+|+|+|||+ ++|| + |+||||
T Consensus 92 ~v~~l~~~~~iD~afdGADgId~-~~~likg~g~-----A~~kekiva~~A~~~IvlaD~SK~~~~~Lg~~~~~plPVEV 165 (264)
T 1xtz_A 92 QLGSIEQYPRIDIAFDGADEVDE-NLQLIKGGGA-----CLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEI 165 (264)
T ss_dssp EECCTTTCCSEEEEEECCSEECT-TSCEECCTTS-----CHHHHHHHHTTEEEEEEEEEGGGBCSSSBTSSCCSCEEEEE
T ss_pred eEEEehhcCcCCEEEECCcccCC-CCCeecCHHH-----HHHHHHHHHHhhCcEEEEEEccccccccccccCCCCEeEEE
Confidence 99999877799999999999999 7899999888 9999999999999999999999999 8998 4 899999
Q ss_pred ecCCHHHHHHHHHhhcCCC-ceeEeCC
Q 029161 169 QPVNWMETAEEIDDLFIGD-AEVFSIP 194 (198)
Q Consensus 169 ~p~~~~~v~~~l~~lf~g~-~~~~R~~ 194 (198)
+|++|.+|.++|++.| |+ .+.||++
T Consensus 166 ~p~a~~~v~~~l~~~~-g~~~~~lR~~ 191 (264)
T 1xtz_A 166 VPSSYVRVKNDLLEQL-HAEKVDIRQG 191 (264)
T ss_dssp CGGGHHHHHHHHHHTS-CCSEEEECEE
T ss_pred ChhHHHHHHHHHHHHc-CCCCceEeec
Confidence 9999999999995544 66 8999974
No 13
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=100.00 E-value=6.6e-42 Score=288.82 Aligned_cols=153 Identities=21% Similarity=0.367 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEE-EcCcHHHHHHHHHcCCCEEEcCC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG-IPTSVASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itv-VTnS~~~a~~l~~~gi~v~~l~~ 100 (198)
.++|++||++|+ ++|+|||+||||+|||+.+++++|.++ + .++|+ ||||+.++.+|.+.|++++.++.
T Consensus 4 ~~~K~~IA~~Aa------~lI~dg~~I~LdsGST~~~la~~L~~~-~----~~itv~VTnS~~~a~~l~~~gi~vi~l~~ 72 (219)
T 1o8b_A 4 DELKKAVGWAAL------QYVQPGTIVGVGTGSTAAHFIDALGTM-K----GQIEGAVSSSDASTEKLKSLGIHVFDLNE 72 (219)
T ss_dssp -------------------------CEEECCSCC--------------------CCEEESCCC------------CCGGG
T ss_pred HHHHHHHHHHHH------HhCCCCCEEEEcChHHHHHHHHHHhcc-C----CCEEEEECCcHHHHHHHHhCCCeEEEeCc
Confidence 679999999999 999999999999999999999999864 1 16999 99999999999888999999888
Q ss_pred CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCCC-CcccEEEecCCHHHHHHH
Q 029161 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEE 179 (198)
Q Consensus 101 ~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~lg-~~ipvEV~p~~~~~v~~~ 179 (198)
.+++|++|+|||+||+ ++++++|+++ +++|||+++++|+++|+|+|||||+++|| +|+||||+|++|.+|.++
T Consensus 73 ~~~~D~af~Gadgid~-~~~~~~~~~~-----a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~lPvEV~p~~~~~v~~~ 146 (219)
T 1o8b_A 73 VDSLGIYVDGADEING-HMQMIKGGGA-----ALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQ 146 (219)
T ss_dssp CSCEEEEEECCSEECT-TSCEECCCCC------HHHHHHHHHHEEEEEEEEEGGGBCSSBTSSCEEEEECGGGHHHHHHH
T ss_pred cCcCCEEEECcceECC-CCCeecCHHH-----HHHHHHHHHHhcCcEEEEEeCcccccccCCCcEEEEEChhHHHHHHHH
Confidence 7799999999999999 7899998888 99999999999999999999999999998 599999999999999999
Q ss_pred HHhhcCCCceeEeC
Q 029161 180 IDDLFIGDAEVFSI 193 (198)
Q Consensus 180 l~~lf~g~~~~~R~ 193 (198)
|+++ |+.+.||+
T Consensus 147 l~~l--g~~~~~R~ 158 (219)
T 1o8b_A 147 LVKL--GGRPEYRQ 158 (219)
T ss_dssp HHHT--TCEEEECT
T ss_pred HHHc--CCCcEeeC
Confidence 9998 89999995
No 14
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.36 E-value=5.1e-12 Score=109.23 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=105.8
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEE-ECcchhHHHHHHHHHHHhhcCCCCCeEEEc-C------cHHHHHHHHH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVG-LGSGQASAMAIEYMGRQLRAGALKDVIGIP-T------SVASANEAAV 90 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~Ig-LgsGST~~~la~~L~~~~~~~~l~~itvVT-n------S~~~a~~l~~ 90 (198)
.+..+.|++||+.++ ++|++|++|. ++.|+|+..+++.+.+.. ++++|++ + +..++.+|.+
T Consensus 90 ~~~~~~~~~Ia~~a~------~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~-----~~~~V~v~etrP~~qG~~~a~~L~~ 158 (276)
T 1vb5_A 90 RRMEEAKRELASIGA------QLIDDGDVIITHSFSSTVLEIIRTAKERK-----KRFKVILTESSPDYEGLHLARELEF 158 (276)
T ss_dssp HHHHHHHHHHHHHHH------HHCCTTEEEECCSCCHHHHHHHHHHHHTT-----CCEEEEEECCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHccCCCEEEEeCCChHHHHHHHHHHHcC-----CeEEEEEeCCCcchhhHHHHHHHHH
Confidence 344678999999999 9999999999 899999999999886531 4788888 7 7889999988
Q ss_pred cCCCEEEcCCC------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCC-CCc
Q 029161 91 AGIPLDQYRDT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL-DGS 163 (198)
Q Consensus 91 ~gi~v~~l~~~------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~l-g~~ 163 (198)
.|++++.+.+. .++|++|+|||+|.. ++++.---|. ..+. .+....+..+||++|++||.... +..
T Consensus 159 ~gI~vtli~dsa~~~~m~~vd~vivGAd~i~~-nG~v~nkiGt-----~~iA-~~A~~~~vp~~V~a~~~K~~~~~~~~~ 231 (276)
T 1vb5_A 159 SGIEFEVITDAQMGLFCREASIAIVGADMITK-DGYVVNKAGT-----YLLA-LACHENAIPFYVAAETYKFHPTLKSGD 231 (276)
T ss_dssp TTCCEEEECGGGHHHHHTTCSEEEECCSEECT-TSCEEEETTH-----HHHH-HHHHHTTCCEEEECCGGGBCSSCCGGG
T ss_pred CCCCEEEEcHHHHHHHHccCCEEEEcccEEec-CCCEeechhH-----HHHH-HHHHHcCCCEEEeccccccCcccCccc
Confidence 99998876532 279999999999999 7766533444 6665 44447789999999999999763 345
Q ss_pred ccEEEec
Q 029161 164 VPVLVQP 170 (198)
Q Consensus 164 ipvEV~p 170 (198)
+|+|--+
T Consensus 232 i~iE~r~ 238 (276)
T 1vb5_A 232 VMLMERD 238 (276)
T ss_dssp CCCCBCC
T ss_pred cccccCC
Confidence 6655443
No 15
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=98.17 E-value=1.3e-05 Score=70.50 Aligned_cols=128 Identities=12% Similarity=0.068 Sum_probs=89.3
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcC-------cHHHHHHHHHcCCCE
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPT-------SVASANEAAVAGIPL 95 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTn-------S~~~a~~l~~~gi~v 95 (198)
..++|++.++ ++|++|++|.- +.++|+..+++...+. | ++++|+-. ....+.+|.+.|+++
T Consensus 107 a~~~I~~~~~------~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~~L~~~gI~v 175 (315)
T 3ecs_A 107 SRNKIADLCH------TFIKDGATILTHAYSRVVLRVLEAAVAA---K--KRFSVYVTESQPDLSGKKMAKALCHLNVPV 175 (315)
T ss_dssp HHHHHHHHHG------GGCCTTEEEEECSCCHHHHHHHHHHHTT---T--CCEEEEEECCTTTTHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHH------HHcCCCCEEEEcCCcHHHHHHHHHHHHc---C--CeEEEEEecCCCcchHHHHHHHHHHcCCCE
Confidence 4678999999 99999998876 7778888887766543 2 34555521 345677888999998
Q ss_pred EEcCCC------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcCCccccCC--C-CcccE
Q 029161 96 DQYRDT------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--D-GSVPV 166 (198)
Q Consensus 96 ~~l~~~------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~sK~~~~l--g-~~ipv 166 (198)
..+.+. .++|+.|.|||.|.. ++++.---|+ ..+- -+.-.....|||++++.||.... + ..+|+
T Consensus 176 tli~Dsa~~~~m~~vd~VivGAd~i~~-nG~v~nkiGT-----~~iA-l~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~ 248 (315)
T 3ecs_A 176 TVVLDAAVGYIMEKADLVIVGAEGVVE-NGGIINKIGT-----NQMA-VCAKAQNKPFYVVAESFKFVRLFPLNQQDVPD 248 (315)
T ss_dssp EEECGGGHHHHGGGCSEEEEECSEECT-TSCEEEETTH-----HHHH-HHHHHTTCCEEEECCGGGBCSCCCSSGGGSCG
T ss_pred EEEehhHHHHHHHhCCEEEECceEEec-CCCeeehhhh-----HHHH-HHHHHhCCCEEEEeccccccccCCCCcccCCc
Confidence 876432 279999999999998 7776544444 3321 22223456899999999998753 3 34666
Q ss_pred EEe
Q 029161 167 LVQ 169 (198)
Q Consensus 167 EV~ 169 (198)
|..
T Consensus 249 e~~ 251 (315)
T 3ecs_A 249 KFK 251 (315)
T ss_dssp GGT
T ss_pred ccc
Confidence 543
No 16
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=98.06 E-value=4.9e-06 Score=72.04 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc-------------HHHHHHH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS-------------VASANEA 88 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS-------------~~~a~~l 88 (198)
.++|++||++|+. ++.++|++|++|||++|||+..++++|.... ..+++++||+. ..++..+
T Consensus 89 ~~~k~~ia~~AA~--~l~~~i~~~~~igl~~GsT~~~~~~~L~~~~---~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~l 163 (315)
T 2w48_A 89 EEQLSAMGQHGAL--LVDRLLEPGDIIGFSWGRAVRSLVENLPQRS---QSRQVICVPIIGGPSGKLESRYHVNTLTYGA 163 (315)
T ss_dssp CHHHHHHHHHHHH--HHHHHCCTTCEEEECCSHHHHHHHTTSCCCS---SCCCCEEEESBCBCTTSSCGGGCHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHHhCCCCCEEEECChHHHHHHHHhhcccc---CCCCcEEEEcCCCCCCCCccccCHHHHHHHH
Confidence 4479999999991 1112499999999999999999999996421 12479999962 2445554
Q ss_pred H-HcCCCEEEcC-------------------------CCCcccEEEeecCccCC
Q 029161 89 A-VAGIPLDQYR-------------------------DTSQIDFAFDDADIIEE 116 (198)
Q Consensus 89 ~-~~gi~v~~l~-------------------------~~~~iD~af~Gad~Vd~ 116 (198)
. ..|.+...+. ...++|++|+|+.+...
T Consensus 164 a~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIGg~~~ 217 (315)
T 2w48_A 164 AARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAI 217 (315)
T ss_dssp HHHTTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCBCTTC
T ss_pred HHHHCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccCcchh
Confidence 3 4455432210 11379999999996554
No 17
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=97.99 E-value=0.00011 Score=64.93 Aligned_cols=129 Identities=19% Similarity=0.141 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEE-cC------cHHHHHHHHHcCCC
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGI-PT------SVASANEAAVAGIP 94 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvV-Tn------S~~~a~~l~~~gi~ 94 (198)
+..++|++.++ ++|++|++|.- +.++|+..+++...+. | ++++|+ +- .-.+|.+|.+.||+
T Consensus 126 ~~~~~I~~~g~------~~I~~g~~ILTh~~S~tvl~~l~~A~~~---g--k~~~V~v~EtRP~~qGrltA~eL~~~GI~ 194 (338)
T 3a11_A 126 KALERIGEFGA------KRIEDGDVIMTHCHSKAAISVMKTAWEQ---G--KDIKVIVTETRPKWQGKITAKELASYGIP 194 (338)
T ss_dssp HHHHHHHHHHH------TTCCTTCEEEECSCCHHHHHHHHHHHHT---T--CCCEEEEECCTTTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH------HHhCCCCEEEEeCCcHHHHHHHHHHHHC---C--CeEEEEEeCCCCchhhHHHHHHHHhCCCC
Confidence 45567999999 99999998876 6677888888777653 2 234443 22 23567888899999
Q ss_pred EEEcCC------CCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEEEEEcCCccccC--CCCccc
Q 029161 95 LDQYRD------TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQYKGV--LDGSVP 165 (198)
Q Consensus 95 v~~l~~------~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~ivlaD~sK~~~~--lg~~ip 165 (198)
+..+.+ ...+|+.|.|||.|-. ++++.-=-|+ ..+ .+++ ....-|||++..+||... .|..+|
T Consensus 195 vtlI~Dsa~~~~M~~Vd~VivGAd~V~a-nG~v~NKiGT-----~~l--Al~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~ 266 (338)
T 3a11_A 195 VIYVVDSAARHYMKMTDKVVMGADSITV-NGAVINKIGT-----ALI--ALTAKEHRVWTMIAAETYKFHPETMLGQLVE 266 (338)
T ss_dssp EEEECGGGTTTTGGGCSEEEECCSEECT-TSCEEEETTH-----HHH--HHHHHHTTCEEEEECCGGGBCSCCSSSSCCC
T ss_pred EEEEehHHHHHHHHhCCEEEECccEEec-CCCEeecccH-----HHH--HHHHHHcCCCEEEecccceecccCCCCcccc
Confidence 877542 1379999999999988 7765433443 222 2222 344689999999999985 366788
Q ss_pred EEEec
Q 029161 166 VLVQP 170 (198)
Q Consensus 166 vEV~p 170 (198)
+|--+
T Consensus 267 iE~r~ 271 (338)
T 3a11_A 267 IEMRD 271 (338)
T ss_dssp CCBCC
T ss_pred cccCC
Confidence 77654
No 18
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=97.97 E-value=1.8e-06 Score=75.80 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhccccccccCCC-CCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc-----------CcHHHHHHHHH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITS-GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP-----------TSVASANEAAV 90 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~-g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT-----------nS~~~a~~l~~ 90 (198)
.+|++||++|+ .++.++|++ |++|||++|||+..++++|.... -..+++++|| ++..++..+.+
T Consensus 122 ~~k~~ia~~AA--~~l~~~i~~~~~~igl~~GsT~~~~~~~L~~~~--~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~ 197 (345)
T 2o0m_A 122 KVLSDFGDVLT--NTLNLLLPNGENTIAVMGGTTMAMVAENMGSLE--TEKRHNLFVPARGGIGEAVSVQANSISAVMAN 197 (345)
T ss_dssp HHHHHHHHHHH--HHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCC--CSSEEEEEEESBSCCCCCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHhcCcCCCEEEECCcHHHHHHHHHhhhcc--CCCCCcEEEEcCCcCCCCcccCHHHHHHHHHH
Confidence 37999999999 111224899 99999999999999999996420 0014799999 77778776654
Q ss_pred -cCCCEEEc------C--------C----------CCcccEEEeecCccC
Q 029161 91 -AGIPLDQY------R--------D----------TSQIDFAFDDADIIE 115 (198)
Q Consensus 91 -~gi~v~~l------~--------~----------~~~iD~af~Gad~Vd 115 (198)
.|.+...+ . + ..++|++|.|+.+.+
T Consensus 198 ~~~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~~ 247 (345)
T 2o0m_A 198 KTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRAL 247 (345)
T ss_dssp HHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHH
T ss_pred HhCCceEEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCch
Confidence 35432211 0 1 136999999998765
No 19
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=97.85 E-value=4e-05 Score=65.54 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHH-----------H-HHHHc
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASA-----------N-EAAVA 91 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a-----------~-~l~~~ 91 (198)
.++.||+.|| ..|+||++|.+|.| .-..++..+.+.. -+++++.+.+-.+- . -+. .
T Consensus 7 ~~e~Ia~~aA------~~i~dG~~v~lGiG-iP~~va~~~~~~~----~~~l~l~~E~G~lg~~p~~~~~~~~d~~~~-~ 74 (260)
T 1poi_B 7 NKEMQAVTIA------KQIKNGQVVTVGTG-LPLIGASVAKRVY----APDCHIIVESGLMDCSPVEVPRSVGDLRFM-A 74 (260)
T ss_dssp HHHHHHHHHH------TTCCTTCEEECCSS-HHHHHHHHHHHTT----CTTCEEEETTTEEEECCSSCCSSTTCHHHH-T
T ss_pred HHHHHHHHHH------HhCCCCCEEEeCCC-HHHHHHHHHHHhc----CCCEEEEEeCceecCcccCcccCccCCCcE-e
Confidence 5668999999 99999999999999 6677777776521 14788777441100 0 000 0
Q ss_pred CC-------CEEE------cCCCCcccEEEeecCccCCCCcce--------------eecCCCCCcchhHHHHHHHHHhc
Q 029161 92 GI-------PLDQ------YRDTSQIDFAFDDADIIEEGTLVA--------------VIGRQQPKGDESIIQEKSVLNAA 144 (198)
Q Consensus 92 gi-------~v~~------l~~~~~iD~af~Gad~Vd~~~~~~--------------ikG~g~~~~~ea~~~ek~i~~~s 144 (198)
+. ..+. +.. .++|++|+|+-+||. .+++ +.|.|| +. -++ ..|
T Consensus 75 ~a~~~~~~~~~fd~~~~~~~~~-g~~Dv~ilGa~qVD~-~Gnvn~s~iG~~~~p~~~~~G~GG-----a~---D~~-~~A 143 (260)
T 1poi_B 75 HCGCIWPNVRFVGFEINEYLHK-ANRLIAFIGGAQIDP-YGNVNSTSIGDYHHPKTRFTGSGG-----AN---GIA-TYS 143 (260)
T ss_dssp SEEEECCHHHHHHHHHHHHHHT-CCCEEEEECCSEECT-TCCEECSEEECSSSEEEECCCCTT-----HH---HHH-HHS
T ss_pred ehhhhcCHHHHhcccchhhhhc-CCccEEEeChHHhCC-CCCccccccCCcCCCceEeecccc-----hH---HHH-hCC
Confidence 00 0001 122 378999999999998 5644 356666 22 233 577
Q ss_pred CcEEEEEcCC--ccccCCC
Q 029161 145 DKLVFMVSEN--QYKGVLD 161 (198)
Q Consensus 145 ~~~ivlaD~s--K~~~~lg 161 (198)
+++|++ +|+ ||++++.
T Consensus 144 ~~~iv~-~h~~rk~V~~v~ 161 (260)
T 1poi_B 144 NTIIMM-QHEKRRFMNKID 161 (260)
T ss_dssp CEEEEC-CCCTTTBCSSCS
T ss_pred CEEEEE-ECCCCeecccCc
Confidence 888888 886 7887653
No 20
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=97.84 E-value=7e-05 Score=67.25 Aligned_cols=130 Identities=10% Similarity=0.024 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEC--cc-------hhHHHHHHHHHHHhhcCCCCCeEEEc-C------cH-HH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLG--SG-------QASAMAIEYMGRQLRAGALKDVIGIP-T------SV-AS 84 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg--sG-------ST~~~la~~L~~~~~~~~l~~itvVT-n------S~-~~ 84 (198)
.+..++|++.++ ++|++|++|.-= || +|+..+++...++ | ++++|+- - .. .+
T Consensus 157 ~~~~~~I~~~g~------~~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlt 225 (374)
T 2yvk_A 157 EETCRLIGQNAL------QLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQK---D--LGLHIYACETRPVLQGSRLT 225 (374)
T ss_dssp HHHHHHHHHHHG------GGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHT---T--CCCEEEEECCTTTTHHHHTH
T ss_pred HHHHHHHHHHHH------HHhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHc---C--CEEEEEEeCCCCccccHHHH
Confidence 345566999999 999999999872 22 3677777766543 2 2444442 2 11 36
Q ss_pred HHHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEEEEEcCCc
Q 029161 85 ANEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQ 155 (198)
Q Consensus 85 a~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~ivlaD~sK 155 (198)
|.+|.+.||++..+.+. ..+|+.|.|||.|-. ++++.-=-|+ ..+ .+++ ....-|||+|..+|
T Consensus 226 A~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~a-NG~v~NKiGT-----y~l--Al~Ak~~~vPfyV~ap~~k 297 (374)
T 2yvk_A 226 AWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAK-NGDTANKIGT-----YGL--AILANAFDIPFFVAAPLST 297 (374)
T ss_dssp HHHHHTTTCEEEEECGGGHHHHHHHTTCCEEEECCSEEET-TCCEEEETTH-----HHH--HHHHHHTTCCEEEECCGGG
T ss_pred HHHHHHcCCCEEEEehhHHHHHhhhcCCCEEEECccEEec-CCCEEecccH-----HHH--HHHHHHcCCCEEEecccce
Confidence 77888999998876432 249999999999988 6765432333 222 2332 33468999999999
Q ss_pred cccC--CCCcccEEEec
Q 029161 156 YKGV--LDGSVPVLVQP 170 (198)
Q Consensus 156 ~~~~--lg~~ipvEV~p 170 (198)
|... +|..+|+|--+
T Consensus 298 ~d~~~~~g~~i~iEer~ 314 (374)
T 2yvk_A 298 FDTKVKCGADIPIEERD 314 (374)
T ss_dssp EETTCSSGGGSCCCBCC
T ss_pred eCccCCCccccccccCC
Confidence 9975 35678888755
No 21
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=97.71 E-value=0.00032 Score=62.40 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEEC--cc-------hhHHHHHHHHHHHhhcCCCCCeEEE-cCc------H-HHH
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLG--SG-------QASAMAIEYMGRQLRAGALKDVIGI-PTS------V-ASA 85 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg--sG-------ST~~~la~~L~~~~~~~~l~~itvV-TnS------~-~~a 85 (198)
+..++|++.++ ++|++|++|.-= || +|+..+++...++ | ++++|+ +-| . .++
T Consensus 131 ~~~~~I~~~g~------~~I~~g~~ILThcnsg~lat~g~gtal~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta 199 (351)
T 1t5o_A 131 ERNRKMGEYGA------ELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQ---G--KEIRVIACETRPLNQGSRLTC 199 (351)
T ss_dssp HHHHHHHHHHH------TTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHT---T--CCCEEEEECCTTTTHHHHTHH
T ss_pred HHHHHHHHHHH------HHhCCCCEEEEecCCccccccCCChHHHHHHHHHHC---C--CEEEEEEeCCCcccccHHHHH
Confidence 45566999999 999999999882 22 3677777766543 2 234443 221 1 357
Q ss_pred HHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEEEEEcCCcc
Q 029161 86 NEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQY 156 (198)
Q Consensus 86 ~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~ivlaD~sK~ 156 (198)
.+|.+.||++..+.+. ..+|+.|.|||.|-. ++ +.-=-|+ ..+ .+++ ....-|||++.++||
T Consensus 200 ~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~a-NG-v~NKiGT-----~~l--Al~Ak~~~vPfyV~a~~~k~ 270 (351)
T 1t5o_A 200 WELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVR-DA-VFNKIGT-----YTV--SVVAKHHNIPFYVAAPKATF 270 (351)
T ss_dssp HHHHHTTCCEEEECGGGHHHHHHTTCCSEEEECCSEEET-TE-EEEETTH-----HHH--HHHHHHTTCCEEEECCGGGB
T ss_pred HHHHhCCCCEEEEehhHHHHHhhcCCCCEEEECccchhh-cC-cccccCH-----HHH--HHHHHHcCCCEEEeCcccee
Confidence 7888999998876431 249999999999988 67 4422333 222 2332 344689999999999
Q ss_pred ccC-CCCcccEEEec
Q 029161 157 KGV-LDGSVPVLVQP 170 (198)
Q Consensus 157 ~~~-lg~~ipvEV~p 170 (198)
... .|..+|+|--+
T Consensus 271 d~~~~g~~i~iEer~ 285 (351)
T 1t5o_A 271 DWERTAKDVVIEERP 285 (351)
T ss_dssp CTTCCGGGCCCCBCC
T ss_pred ccccCCCccccccCC
Confidence 875 34568887654
No 22
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=97.68 E-value=0.00026 Score=62.94 Aligned_cols=130 Identities=15% Similarity=0.067 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEC--cch-------hHHHHHHHHHHHhhcCCCCCeEEEcC-------cH-HH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLG--SGQ-------ASAMAIEYMGRQLRAGALKDVIGIPT-------SV-AS 84 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLg--sGS-------T~~~la~~L~~~~~~~~l~~itvVTn-------S~-~~ 84 (198)
.+..++|++.++ ++|++|++|.-= ||+ |+..+++...++ | ++++|+-. .. .+
T Consensus 132 ~~~~~~I~~~g~------~~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlt 200 (347)
T 1t9k_A 132 IEVNKAIGKNGA------QLIKDGSTILTHCNAGALATVDYGTALGVIRAAVES---G--KRIRVFADETRPYLQGARLT 200 (347)
T ss_dssp HHHHHHHHHHHH------TTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHTH
T ss_pred HHHHHHHHHHHH------HHhCCCCEEEEecCCCccccCCccHHHHHHHHHHHC---C--CeEEEEEeCCCCccccHHHH
Confidence 345667999999 999999998873 331 787777776553 2 34555432 11 36
Q ss_pred HHHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEEEEEcCCc
Q 029161 85 ANEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQ 155 (198)
Q Consensus 85 a~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~ivlaD~sK 155 (198)
+.+|.+.||++..+.+. ..+|+.|.|||.|-. ++++.-=-|+ ..+ .+++ ....-|||++..+|
T Consensus 201 a~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~a-NG~v~NKiGT-----~~l--Al~Ak~~~vPfyV~ap~~k 272 (347)
T 1t9k_A 201 AWELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIAL-NGDTANKIGT-----YSL--AVLAKRNNIPFYVAAPVST 272 (347)
T ss_dssp HHHHHTTTCEEEEECGGGHHHHHHTTCCSEEEECCSEEET-TSCEEEETTH-----HHH--HHHHHHTTCCEEEECCGGG
T ss_pred HHHHHhCCCCEEEEehhHHHHHhhcCCCCEEEECccEEec-CCCEEecccH-----HHH--HHHHHHcCCCEEEecccce
Confidence 77888999998775431 249999999999988 6765433333 222 2232 34468999999999
Q ss_pred cccCC--CCcccEEEec
Q 029161 156 YKGVL--DGSVPVLVQP 170 (198)
Q Consensus 156 ~~~~l--g~~ipvEV~p 170 (198)
|.... |..+|+|--+
T Consensus 273 ~d~~~~~g~~i~iE~r~ 289 (347)
T 1t9k_A 273 IDPTIRSGEEIPIEERR 289 (347)
T ss_dssp EETTCSSGGGSCCCBCC
T ss_pred eccccCCccccccccCC
Confidence 98753 5678887655
No 23
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=97.65 E-value=0.00021 Score=64.34 Aligned_cols=129 Identities=13% Similarity=-0.011 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhccccccccCC--------CCCEEEEC--cc-------hhHHHHHHHHHHHhhcCCCCCeEEEcC-----
Q 029161 23 SVLFRAAKHTVTFLIVDTYIT--------SGMVVGLG--SG-------QASAMAIEYMGRQLRAGALKDVIGIPT----- 80 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~--------~g~~IgLg--sG-------ST~~~la~~L~~~~~~~~l~~itvVTn----- 80 (198)
+..++|++.++ ++|+ +|++|.-= || +|+..+++...++ | +.++|+-.
T Consensus 154 ~~~~~I~~~g~------~~I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---g--k~~~V~v~EtRP~ 222 (383)
T 2a0u_A 154 AFNEGIMRHGA------AHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD---G--KLERVYACETRPW 222 (383)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHT---T--CEEEEEEECCTTT
T ss_pred HHHHHHHHHHH------HHhhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHc---C--CeEEEEEeCCCCc
Confidence 44566999999 9998 99998872 22 3787777776653 2 24555432
Q ss_pred --cH-HHHHHHHHcCCCEEEcCCC--------CcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEE
Q 029161 81 --SV-ASANEAAVAGIPLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLV 148 (198)
Q Consensus 81 --S~-~~a~~l~~~gi~v~~l~~~--------~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~i 148 (198)
.. .++.+|.+.||++..+.+. ..+|+.|.|||.|-. ++++.-=-|+ ..+ .+++ ...--||
T Consensus 223 ~qGarltA~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~a-NG~v~NKiGT-----y~l--Al~Ak~~~vPfy 294 (383)
T 2a0u_A 223 NQGARLTVYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQ-NGDTANKIGT-----YNL--AVSAKFHGVKLY 294 (383)
T ss_dssp THHHHTHHHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECT-TCCEEEETTH-----HHH--HHHHHHTTCCEE
T ss_pred cchHHHHHHHHHHcCCCEEEEehhHHHHHhhcCCCCEEEECccEEec-CCCEeecccH-----HHH--HHHHHHcCCCEE
Confidence 11 3677889999998876432 249999999999988 6765432333 222 2222 3446899
Q ss_pred EEEcCCccccC--CCCcccEEEec
Q 029161 149 FMVSENQYKGV--LDGSVPVLVQP 170 (198)
Q Consensus 149 vlaD~sK~~~~--lg~~ipvEV~p 170 (198)
|++..+||... +|..+|+|--+
T Consensus 295 V~ap~~k~d~~~~~g~~i~iEer~ 318 (383)
T 2a0u_A 295 VAAPTTTLDVKTASGNHVEIEERE 318 (383)
T ss_dssp EECCGGGBCTTCCSGGGSCCCBCC
T ss_pred EeCCcceecCcCCCccccccccCC
Confidence 99999999985 36778888655
No 24
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.61 E-value=0.00015 Score=65.86 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH
Q 029161 21 GSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN 86 (198)
Q Consensus 21 ~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~ 86 (198)
-.+.+++||+.|+ ++|+||++|.+|.|++...++..|.++ +++++.|.-+.-..
T Consensus 192 ~~~~~~~Ia~~~a------~~i~dg~~lqlGiG~ip~av~~~l~~~------~~l~i~te~~~~~~ 245 (439)
T 3d3u_A 192 GSDLELRIGQNCA------SLIKDGDTLQLGIGGIPDAVLRALEGH------KDLGIHTEMFTDGV 245 (439)
T ss_dssp CCHHHHHHHHHHH------TTCCTTCEEEECSSHHHHHHHHTTTTC------CSBEEECSCBCHHH
T ss_pred CChHHHHHHHHHH------HhcCCCCEEEeccchHHHHHHHHHhhC------CCceEEEEEecchh
Confidence 4568899999999 999999999999999999999999875 58999888665544
No 25
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=97.34 E-value=0.00079 Score=56.72 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=35.3
Q ss_pred HHHHhccccccccCCCCCEEEECc--c-hhHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 29 AKHTVTFLIVDTYITSGMVVGLGS--G-QASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 29 A~~Aa~~~~~~~~I~~g~~IgLgs--G-ST~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
|++|+ ++|+|||+|++|+ | .+-..++++|.++ ..+++|+++||.
T Consensus 11 a~eAv------~~IkdG~tV~~gGf~~~g~P~~li~aL~~~----~~kdLtli~~~~ 57 (235)
T 3rrl_A 11 LDKAL------SALKDGDTILVGGFGLCGIPEYAIDYIYKK----GIKDLIVVSNNC 57 (235)
T ss_dssp THHHH------TTCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEECSCC
T ss_pred HHHHH------hhCCCCCEEEECCcCccCCHHHHHHHHHhc----CCCcEEEEEcCC
Confidence 67788 8899999999986 2 3557888999876 247999999963
No 26
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=97.27 E-value=7.9e-05 Score=61.79 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=69.8
Q ss_pred HHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH---HHH--------HcCC
Q 029161 25 LFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN---EAA--------VAGI 93 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~---~l~--------~~gi 93 (198)
|+.||++|| ..|+||++|.||.| .-..++.++. . +++++.+.+-.+.. -+. +.|-
T Consensus 2 r~~Ia~raA------~el~dG~~vnlGIG-iP~~va~~~~-~------~~v~l~~E~G~~g~~p~p~~~~~d~~~in~G~ 67 (207)
T 3rrl_B 2 REAIIKRAA------KELKEGMYVNLGIG-LPTLVANEVS-G------MNIVFQSENGLLGIGAYPLEGSVDADLINAGK 67 (207)
T ss_dssp HHHHHHHHH------TTCCTTCEEEECTT-GGGGGGGGGS-S------SCCEEEETTTEEEECCCCCTTCCCTTCBCTTS
T ss_pred hHHHHHHHH------HhCCCCCEEEECCC-hHHHHHHhcc-C------CcEEEEeccceecCcCCCCccccCHhHeecCC
Confidence 678999999 99999999999999 4445556654 2 37887776543321 000 0110
Q ss_pred ---CEE----EcC--------CCCcccEEEeecCccCCCCcc---------eeecCCCCCcchhHHHHHHHHHhcCcEEE
Q 029161 94 ---PLD----QYR--------DTSQIDFAFDDADIIEEGTLV---------AVIGRQQPKGDESIIQEKSVLNAADKLVF 149 (198)
Q Consensus 94 ---~v~----~l~--------~~~~iD~af~Gad~Vd~~~~~---------~ikG~g~~~~~ea~~~ek~i~~~s~~~iv 149 (198)
... .+. +-.++|++|+|+-+||. .++ .++|.|| +. -++ ..|+++|+
T Consensus 68 ~~~t~~~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~-~Gnvn~~~~~~~~~~G~GG-----a~---d~~-~~A~~vi~ 137 (207)
T 3rrl_B 68 ETITVVPGASFFNSADSFAMIRGGHIDLAILGGMEVSQ-NGDLANWMIPKKLIKGMGG-----AM---DLV-HGAKKVIV 137 (207)
T ss_dssp BBCCEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEET-TSCEECSEETTTEECCCTT-----HH---HHH-HHSSEEEE
T ss_pred ceeeecCCceeeCCHHHHHHHhCCCeeEEEECHHHHCc-CCCccccccCCeeecCccc-----HH---HHH-hCCCEEEE
Confidence 011 011 12489999999999997 553 3555555 32 233 57899999
Q ss_pred EEcCCc
Q 029161 150 MVSENQ 155 (198)
Q Consensus 150 laD~sK 155 (198)
+.+|++
T Consensus 138 ~~~~t~ 143 (207)
T 3rrl_B 138 IMEHCN 143 (207)
T ss_dssp ECCSBC
T ss_pred EEeeec
Confidence 999984
No 27
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=97.25 E-value=0.00095 Score=55.31 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHHhccccccccCCCCCEEEECcc---hhHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 29 AKHTVTFLIVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 29 A~~Aa~~~~~~~~I~~g~~IgLgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+++|+ ++|+|||+|++|.. .+-..++++|.++ .++++|+++++.
T Consensus 8 a~eAv------~~IkdG~tv~~ggf~~~g~P~~l~~aL~~~----~~~dLtl~~~~~ 54 (220)
T 1k6d_A 8 LQDAT------GFFRDGMTIMVGGFMGIGTPSRLVEALLES----GVRDLTLIANDT 54 (220)
T ss_dssp HHHHG------GGCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEECSBC
T ss_pred HHHHH------hhCCCCCEEEECCccccCCHHHHHHHHHHC----CCCCEEEEEecC
Confidence 67888 89999999999864 3467888888876 257999999864
No 28
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=97.13 E-value=0.00081 Score=56.61 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=35.8
Q ss_pred HHHHhccccccccCCCCCEEEECcc---hhHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 29 AKHTVTFLIVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 29 A~~Aa~~~~~~~~I~~g~~IgLgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+++|+ ++|+|||+|++|.- .+-..++++|.++ .++++|+++++.
T Consensus 11 a~eAv------~~IkdG~tV~~ggf~~~g~P~~li~aL~~~----~~~dLtl~~~~~ 57 (241)
T 3cdk_A 11 SKEAA------KLIHDGDTLIAGGFGLCGIPEQLILSIRDQ----GVKDLTVVSNNC 57 (241)
T ss_dssp HHHHH------TTCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEEESSC
T ss_pred HHHHH------hhCCCCCEEEECCcCccCcHHHHHHHHHHc----CCCCEEEEEecC
Confidence 67888 89999999999873 3568888999876 257999999853
No 29
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=96.76 E-value=0.0033 Score=57.01 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=75.5
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH-----HHHHcCCCE--
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSVASAN-----EAAVAGIPL-- 95 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~~~a~-----~l~~~gi~v-- 95 (198)
.|..-|++|+ .++|+|||+|+++.+. +-..++++|.++.+ .++++|+++|...... .+.. .+++
T Consensus 9 ~K~~sa~eAv-----~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~--~~~dLtli~~~~~~~~~~~~~~l~~-~i~~~~ 80 (439)
T 3d3u_A 9 QRVCSADEAV-----VDSLKPGTKVVFGHAAAAPVRFSQAMYRQRE--KLENITVFHMLYFGDAPHLAPEMRS-HVHPTL 80 (439)
T ss_dssp HHBCCHHHHH-----HHHCCTTCEEEECCBTTCCHHHHHHHHHTTT--TCCSEEEECSCBSSCCTTSSGGGTT-TEEEEC
T ss_pred cCCCcHHHHH-----HhhCCCcCEEEECcccChHHHHHHHHHHhhC--CCCCEEEEEecCCCcchhccHHhCC-cEEEEE
Confidence 3444466666 3679999999999885 56889999987642 2579999998422110 1110 0111
Q ss_pred ------------------EE---------c-CCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcE
Q 029161 96 ------------------DQ---------Y-RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKL 147 (198)
Q Consensus 96 ------------------~~---------l-~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ 147 (198)
.. + .....+|++|+.+...|. ++++.-|. . ... ...++++|+++
T Consensus 81 ~~~g~~~r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~-~Gnls~g~-s-----~~~-~~~~~~aA~~V 152 (439)
T 3d3u_A 81 NFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNE-EGYCSFGV-S-----CDY-TKAAAECAPVV 152 (439)
T ss_dssp --------------------CCGGGHHHHHTTSSSCCSEEEEEEECCCT-TSEEECTT-B-----CBT-HHHHHHHCSEE
T ss_pred CCCChHHHHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCC-CceEEEec-c-----ccc-hHHHHhhCCeE
Confidence 00 1 122479999999999999 78886532 1 111 24455789999
Q ss_pred EEEEcCCc
Q 029161 148 VFMVSENQ 155 (198)
Q Consensus 148 ivlaD~sK 155 (198)
|+-+++..
T Consensus 153 IveVn~~v 160 (439)
T 3d3u_A 153 VAEVNKQM 160 (439)
T ss_dssp EEEEESSS
T ss_pred EEEECCCC
Confidence 99999977
No 30
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=96.67 E-value=0.0013 Score=55.87 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
+.++++++.|+ .++.+++++|++||++.|+|...++++|... ..+++++|+
T Consensus 37 ~~~~~lg~~aA--~~L~~~l~~~~viGv~wG~T~~~v~~~l~~~----~~~~~~vV~ 87 (267)
T 3nze_A 37 ETLDRVAMQAA--RTIGPLVDSNAIIGVAWGATLSAVSRHLTRK----MTHDSIVVQ 87 (267)
T ss_dssp HHHHHHHHHHH--HHHGGGCCSSCEEEECCSHHHHHHHHTCCCC----CCSSCEEEE
T ss_pred HHHHHHHHHHH--HHHHHhCCCCCEEEECCCHHHHHHHHhcCcc----CCCCCEEEE
Confidence 35678899888 4566888999999999999999999999643 235777774
No 31
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=96.58 E-value=0.011 Score=54.13 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=75.6
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCc-HHHH--HHHH-H--------
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTS-VASA--NEAA-V-------- 90 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS-~~~a--~~l~-~-------- 90 (198)
.|..=|++|+ ++|++||+|+++++. +-..+.++|.++.+.+.++++|+++.- ..-. ..+. .
T Consensus 24 ~K~vsaeEAv------~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~ 97 (455)
T 3qli_A 24 EKLTTPEEAV------SSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPY 97 (455)
T ss_dssp HHBCCHHHHT------TTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEE
T ss_pred hcCCCHHHHH------HhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEe
Confidence 3434488999 999999999999874 337889999887554567899998632 2111 1111 1
Q ss_pred -------------cC--------CCEEE---------cCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHH
Q 029161 91 -------------AG--------IPLDQ---------YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSV 140 (198)
Q Consensus 91 -------------~g--------i~v~~---------l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i 140 (198)
.| +..+. +.....+|++|+.+...|. ++++.-|... .. ...+
T Consensus 98 ~~f~~~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~-~G~~s~g~s~-----~~--~~~~ 169 (455)
T 3qli_A 98 SMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDC-HGYFSLGVGN-----DY--SSRI 169 (455)
T ss_dssp ESSCCHHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCT-TSEEECTTBC-----BT--HHHH
T ss_pred eCcCChhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCC-CceEEEccCC-----Cc--hHHH
Confidence 11 11110 1122368999999999999 7888754322 11 1445
Q ss_pred HHhcCcEEEEEcCC
Q 029161 141 LNAADKLVFMVSEN 154 (198)
Q Consensus 141 ~~~s~~~ivlaD~s 154 (198)
+++|+++|+-+++.
T Consensus 170 a~~Ak~VI~EVN~~ 183 (455)
T 3qli_A 170 ARSARRFIVEVNRY 183 (455)
T ss_dssp HHHSSEEEEEECTT
T ss_pred HhhcCEEEEEecCC
Confidence 57899999988763
No 32
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=96.50 E-value=0.0013 Score=55.81 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=38.8
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
.++++++.|+ .++.+++++|++||++.|+|+..++++|... ..+++++|+
T Consensus 37 ~~~~lg~aaA--~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~----~~~~~~~V~ 86 (267)
T 3kv1_A 37 QRKQVAALVS--SYLNNNLQEGMAVAVGQGQNVAAVADHAGIV----TQRNARFVS 86 (267)
T ss_dssp HHHHHHHHHH--HHHHHHCCTTCEEEECCSHHHHHHHHCCCCC----CCCCCEEEE
T ss_pred HHHHHHHHHH--HHHHHhCCCCCEEEECchHHHHHHHHhcccc----CCCCCEEEe
Confidence 4678899888 4556788999999999999999999998643 124566653
No 33
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=96.39 E-value=0.0068 Score=55.48 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcc-hhHHHHHHHHHHHhhcCCCCCeEEEcC-cHHHH----HHHHHcCCCEEE
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSG-QASAMAIEYMGRQLRAGALKDVIGIPT-SVASA----NEAAVAGIPLDQ 97 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsG-ST~~~la~~L~~~~~~~~l~~itvVTn-S~~~a----~~l~~~gi~v~~ 97 (198)
.|..=|++|+ ++|++||+|+++.+ .+-..+.++|.++.. .++++++++. |+.-. ..+.+ .++...
T Consensus 9 ~Kl~saeeA~------~~ik~G~~v~~~~~~~~p~~l~~al~~~~~--~l~~v~l~~~~s~~~~~~~~~~~~~-~~~~~~ 79 (448)
T 3gk7_A 9 DRTCTADEAV------KSIKSGDRVLFAHCVAEPPVLVEAMVANAA--AYKNVTVSHMVTLGKGEYSKPEYKE-NFTFEG 79 (448)
T ss_dssp HTBCCHHHHG------GGCCTTCEEEECSGGGCCHHHHHHHHHTGG--GCSSEEEEESSCSSCCGGGSGGGTT-TEEEEE
T ss_pred hcCCCHHHHH------HhCCCcCEEEECCCCCCHHHHHHHHHHHHH--hhcCeEEEEeeccCCccccChHHhC-cEEEec
Confidence 4555588899 99999999999887 445778888887643 3679999886 43211 11111 011110
Q ss_pred ----------------------c--------CCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcE
Q 029161 98 ----------------------Y--------RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKL 147 (198)
Q Consensus 98 ----------------------l--------~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ 147 (198)
+ ....++|++|+.+...|. ++++.-|... .. ...++++|+++
T Consensus 80 ~~~~~~~r~~i~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~-~Gn~s~g~s~-----~~--~~~~a~~A~~V 151 (448)
T 3gk7_A 80 WFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDH-NGFCCVGVSS-----DY--TMQAIKSAKIV 151 (448)
T ss_dssp SSCCTTTHHHHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCT-TSEEECCSBC-----BT--HHHHHHHCSEE
T ss_pred CcCCHHHHhHHhCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCC-CCcEEecCCc-----Ch--HHHHHHhCCeE
Confidence 1 122479999999999999 7888754221 11 24555789999
Q ss_pred EEEEcC
Q 029161 148 VFMVSE 153 (198)
Q Consensus 148 ivlaD~ 153 (198)
|+-+++
T Consensus 152 I~eVn~ 157 (448)
T 3gk7_A 152 LAEVND 157 (448)
T ss_dssp EEEEET
T ss_pred EEEeec
Confidence 998886
No 34
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=96.26 E-value=0.022 Score=52.80 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=73.8
Q ss_pred HHHHhcccccccc--CCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcHHH-----HHHHHHc---------
Q 029161 29 AKHTVTFLIVDTY--ITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSVAS-----ANEAAVA--------- 91 (198)
Q Consensus 29 A~~Aa~~~~~~~~--I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~~~-----a~~l~~~--------- 91 (198)
|++|+ ++ |+|||+|+++.+. +-..++++|.++.++..++++|++++|..- +..+...
T Consensus 49 aeEAv------~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~ 122 (509)
T 1xr4_A 49 LEEAI------RRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSG 122 (509)
T ss_dssp HHHHH------HHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESB
T ss_pred HHHHh------cCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEcc
Confidence 78888 88 9999999998763 456777888776554346799999876532 2222210
Q ss_pred -----------C---CCEEEcC----------CCCcccEEEeecCccCCCCcceee--cCCCCCcchhHHHHHHHHHhcC
Q 029161 92 -----------G---IPLDQYR----------DTSQIDFAFDDADIIEEGTLVAVI--GRQQPKGDESIIQEKSVLNAAD 145 (198)
Q Consensus 92 -----------g---i~v~~l~----------~~~~iD~af~Gad~Vd~~~~~~ik--G~g~~~~~ea~~~ek~i~~~s~ 145 (198)
| ++..... ....+|++|+.+...|. ++++.- |.. ...+.-..+.++.+|+
T Consensus 123 ~g~~~r~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~-~Gnls~~~g~~---~~~s~~~~~a~a~~A~ 198 (509)
T 1xr4_A 123 LRGKLGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDE-FGNANGFSGKS---RCGSLGYAQVDAQYAK 198 (509)
T ss_dssp CCHHHHHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEET-TCCEESSSSSS---CCCCCTTHHHHHHHCS
T ss_pred CCHHHHHHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCC-CceEEEeCCCC---cccchHHHHHHHhhCC
Confidence 1 1222111 22479999999999999 788763 310 0001111145667899
Q ss_pred cEEEEEcC
Q 029161 146 KLVFMVSE 153 (198)
Q Consensus 146 ~~ivlaD~ 153 (198)
++|+-+++
T Consensus 199 ~VIaEVn~ 206 (509)
T 1xr4_A 199 CVVLLTEE 206 (509)
T ss_dssp EEEEEESC
T ss_pred EEEEEeCC
Confidence 99998876
No 35
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=96.16 E-value=0.023 Score=51.65 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=71.5
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcc-hhHHHHHHHHHHHhhcCCCCCeEEEcCcHH-----HHHHHHHc------
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSG-QASAMAIEYMGRQLRAGALKDVIGIPTSVA-----SANEAAVA------ 91 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsG-ST~~~la~~L~~~~~~~~l~~itvVTnS~~-----~a~~l~~~------ 91 (198)
.|..=|++|+ ++|++||+|+++.+ .+-.++.++|.++.+ .++++++++.... ....+.++
T Consensus 13 ~K~~saeEAv------~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~--~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
T 3eh7_A 13 SRIVSAEEAV------KHIKNGERVALSHAAGVPQSCVDALVQQAD--LFQNVEIYHMLCLGEGKYMAPEMAPHFRHITN 84 (434)
T ss_dssp GGEECHHHHH------TTCCTTCEEEECCGGGCCHHHHHHHHHSTT--TC--CEEECCBCTTCC----------------
T ss_pred hcCCcHHHHH------HhCCCcCEEEECCccCCHHHHHHHHHHhHh--hcCCeEEEEeccCCchhhcChhhhCeEEEecC
Confidence 4545588899 99999999999876 455888899988643 3678999875421 11111110
Q ss_pred ------------C-C---CEEE------c-CCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEE
Q 029161 92 ------------G-I---PLDQ------Y-RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLV 148 (198)
Q Consensus 92 ------------g-i---~v~~------l-~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~i 148 (198)
| + |+.. + ....++|++|+.+...|. ++++.-|... . -...++++|+++|
T Consensus 85 ~~~~~~r~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~-~Gn~s~g~s~-----~--~~~~~~~~A~~VI 156 (434)
T 3eh7_A 85 FVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDE-NGYCSFGVSC-----D--YSKPAAESAHLVI 156 (434)
T ss_dssp -------------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCT-TSEEECTTBC-----T--THHHHHHHCSEEE
T ss_pred cCCHHHHHHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCC-CCCEEecCcc-----c--hHHHHHHhCCeEE
Confidence 0 0 0000 0 122479999999999999 7888654211 1 1244557899999
Q ss_pred EEEcCC
Q 029161 149 FMVSEN 154 (198)
Q Consensus 149 vlaD~s 154 (198)
+-+++.
T Consensus 157 ~eVn~~ 162 (434)
T 3eh7_A 157 GEINRQ 162 (434)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 988863
No 36
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=96.09 E-value=0.0027 Score=53.77 Aligned_cols=53 Identities=21% Similarity=0.392 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
...++++++.|+ .++.+++++|++||++.|+|...++++|...... .++++|+
T Consensus 40 ~~~~~~lg~~aA--~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~~~~---~~~~~V~ 92 (266)
T 3efb_A 40 ETQLAMMGLHGA--QLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQS---RQLICVP 92 (266)
T ss_dssp HHHHHHHHHHHH--HHHHHHCCTTCEEEECCSHHHHHHHHTCCCCSSC---CCCEEEE
T ss_pred HHHHHHHHHHHH--HHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCC---CCeEEEE
Confidence 345677898888 4556788999999999999999999999653110 2566554
No 37
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=96.06 E-value=0.019 Score=52.17 Aligned_cols=108 Identities=12% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHhccccccccCCCCCEEEECcc-hhHHHHHHHHHHHhhcCCCCCeEEEcCcHHH-H---H-HHHHcCCCEEE-----
Q 029161 29 AKHTVTFLIVDTYITSGMVVGLGSG-QASAMAIEYMGRQLRAGALKDVIGIPTSVAS-A---N-EAAVAGIPLDQ----- 97 (198)
Q Consensus 29 A~~Aa~~~~~~~~I~~g~~IgLgsG-ST~~~la~~L~~~~~~~~l~~itvVTnS~~~-a---~-~l~~~gi~v~~----- 97 (198)
+++|+ ++|+|||+|+++.+ .+-..++++|.++.+ .++++|+++++..- . . .+ ...+....
T Consensus 9 aeeAv------~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~--~~kdLtl~~~~s~g~~~~~~~~l-~~~i~~~~~~~~~ 79 (436)
T 2oas_A 9 ALEAV------SLIRSGETLWTHSMGATPKVLLDALAKHAL--TLDNITLLQLHTEGAESLSHPSL-LGHLRHRCFFGGV 79 (436)
T ss_dssp HHHHH------TTCCTTCEEEECCBTTCCHHHHHHHHHHGG--GCCSEEEEESSBSSCGGGGSGGG-TTTEEEEESSCCT
T ss_pred HHHHH------hhCCCCCEEEECCccCcHHHHHHHHHHhhc--cCCCEEEEEecccCChhhhHHHh-cCcEEEeecCCCH
Confidence 67888 89999999999866 234678888887642 25799999964211 1 1 11 11111111
Q ss_pred -------------------------cCCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEc
Q 029161 98 -------------------------YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVS 152 (198)
Q Consensus 98 -------------------------l~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD 152 (198)
......+|++|+.+...|. ++++.-|... . -...++++|+++|+-++
T Consensus 80 ~lr~~i~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~-~Gn~s~~~s~-----~--~~~~~a~aA~~VIveVn 151 (436)
T 2oas_A 80 PTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDK-HGMCSLGISV-----E--ATLAACQVAGKIIAHIN 151 (436)
T ss_dssp TTHHHHHTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCT-TCEEECTTBC-----T--THHHHHHHCSEEEEEEC
T ss_pred HHHHHHHcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCC-CceEEEecCc-----C--cHHHHHHhcCeEEEEEc
Confidence 0122479999999999999 7888654211 1 12445578899999888
Q ss_pred C
Q 029161 153 E 153 (198)
Q Consensus 153 ~ 153 (198)
.
T Consensus 152 ~ 152 (436)
T 2oas_A 152 P 152 (436)
T ss_dssp T
T ss_pred C
Confidence 6
No 38
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=96.05 E-value=0.017 Score=53.43 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=72.4
Q ss_pred HHHHHHHHhccccccccCCCCCEEEECcch---hHHHHHHHHHHHhhcCCCCCeEEEcC-cHH--HHHHHHHcC-CCEEE
Q 029161 25 LFRAAKHTVTFLIVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLRAGALKDVIGIPT-SVA--SANEAAVAG-IPLDQ 97 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS---T~~~la~~L~~~~~~~~l~~itvVTn-S~~--~a~~l~~~g-i~v~~ 97 (198)
|..=|++|+ ++|+|||+|++|..+ +-..+.++|.++.++..+ ++|++++ |.. ....+...| ++...
T Consensus 14 Kv~saeEAv------~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl-~Ltl~~~~~~g~~~~~~l~~~g~v~~~~ 86 (497)
T 2g39_A 14 KVMSAAEAA------DLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPL-RISLMTGASLGNDLDKQLTEAGVLARRM 86 (497)
T ss_dssp GBCCHHHHH------TTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCC-CEEEECSSCCCTTHHHHHHHTTCEEEEE
T ss_pred ccCcHHHHH------hhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCc-eEEEEecccccccchHHHhcCCceEEEE
Confidence 444488899 999999999998642 345777788766432122 4999997 321 111222222 22111
Q ss_pred -------------------------------cCCCC-cccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcC
Q 029161 98 -------------------------------YRDTS-QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAAD 145 (198)
Q Consensus 98 -------------------------------l~~~~-~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~ 145 (198)
..... ++|++|+.+...|. ++++.-|... .. ...++++|+
T Consensus 87 ~~~~~~~~r~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe-~Gnls~~~s~-----~~--~~~~a~aA~ 158 (497)
T 2g39_A 87 PFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITE-QGHIVPTTSV-----GN--SASFAIFAK 158 (497)
T ss_dssp SCCCCHHHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECT-TSCEECCSBC-----BT--HHHHHHHSS
T ss_pred eeCCCHHHHHHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEecccCC-CceEEEeCCc-----cc--HHHHHHhCC
Confidence 01223 59999999999999 7888764222 11 244557899
Q ss_pred cEEEEEcCC
Q 029161 146 KLVFMVSEN 154 (198)
Q Consensus 146 ~~ivlaD~s 154 (198)
++|+-++..
T Consensus 159 ~VIvEVn~~ 167 (497)
T 2g39_A 159 QVIVEINLA 167 (497)
T ss_dssp EEEEEEETT
T ss_pred eEEEEEcCC
Confidence 999998873
No 39
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=95.91 E-value=0.0045 Score=52.37 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=39.4
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
.++++++.|+ .++.+.|+++++|||++|+|...++++|... ..+++++|+
T Consensus 39 ~~~~l~~~aA--~~l~~~l~~~~viGla~G~T~~~~~~~l~~~----~~~~v~~v~ 88 (266)
T 2gnp_A 39 LSERISQVAA--GVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK----SVRNVHFYP 88 (266)
T ss_dssp HHHHHHHHHH--HHHHHHCCTTCEEEECCSHHHHHHHHHCCCC----CCSSCEEEE
T ss_pred HHHHHHHHHH--HHHHHhCCCCCEEEECChHHHHHHHHhcccc----CCCCCEEEE
Confidence 4677888888 3455778999999999999999999999753 225787764
No 40
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=95.91 E-value=0.011 Score=54.69 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=69.6
Q ss_pred HHHHhccccccccCCCCCEEEECcch---hHHHHHHHHHHHhhc----CCCCCeEEEcC-cHH--HH-HHHHHcCCCEEE
Q 029161 29 AKHTVTFLIVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLRA----GALKDVIGIPT-SVA--SA-NEAAVAGIPLDQ 97 (198)
Q Consensus 29 A~~Aa~~~~~~~~I~~g~~IgLgsGS---T~~~la~~L~~~~~~----~~l~~itvVTn-S~~--~a-~~l~~~gi~v~~ 97 (198)
|++|+ ++|+|||+|++|..+ +-..++++|.++.++ |.-.++|++++ |.. .. .++....++...
T Consensus 8 aeEAv------~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~ 81 (506)
T 2nvv_A 8 AEEAA------EFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRT 81 (506)
T ss_dssp HHHHH------TTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEE
T ss_pred HHHHH------hhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEe
Confidence 67888 899999999998542 345666777665332 11127999996 221 11 222222222211
Q ss_pred -------------------------------cCCCC-cccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcC
Q 029161 98 -------------------------------YRDTS-QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAAD 145 (198)
Q Consensus 98 -------------------------------l~~~~-~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~ 145 (198)
..... ++|++|+.+...|. ++++.-|... .. ...++++|+
T Consensus 82 ~~~~~~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe-~Gnls~~~s~-----~~--~~~~a~aA~ 153 (506)
T 2nvv_A 82 PYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTE-DGKILPTTGV-----GI--LPTICRLAD 153 (506)
T ss_dssp SCCCCHHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECT-TSEEECCSBC-----BT--HHHHHHHCS
T ss_pred eeCCCHHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCC-CceEEEeCCc-----Cc--HHHHHHhCC
Confidence 01224 59999999999999 7888764222 11 245557899
Q ss_pred cEEEEEcCC
Q 029161 146 KLVFMVSEN 154 (198)
Q Consensus 146 ~~ivlaD~s 154 (198)
++|+-++..
T Consensus 154 ~VIveVn~~ 162 (506)
T 2nvv_A 154 RIIVELNDK 162 (506)
T ss_dssp EEEEEEETT
T ss_pred cEEEEECCC
Confidence 999998873
No 41
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=95.83 E-value=0.03 Score=52.16 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHHhccccccccCCCCCEEEECc---c-hhHHHHHHHHHHHhh-cCCCCCeEEEcCcH
Q 029161 25 LFRAAKHTVTFLIVDTYITSGMVVGLGS---G-QASAMAIEYMGRQLR-AGALKDVIGIPTSV 82 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g~~IgLgs---G-ST~~~la~~L~~~~~-~~~l~~itvVTnS~ 82 (198)
|..=+++|+ ++|+|||+|++|. + .+-..++++|.++.. .+.++++|+++++.
T Consensus 14 K~~sa~eAv------~~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~~ 70 (531)
T 2ahu_A 14 PVLSAQEAV------NYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTG 70 (531)
T ss_dssp CBCCHHHHH------TTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESSC
T ss_pred ccCCHHHHH------hhCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEecc
Confidence 333478899 9999999999986 3 345788888887643 24568999998854
No 42
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=95.71 E-value=0.021 Score=52.86 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhccccccccCCCCCEEEECc--c-hhHHHHHHHHHHHhh----cCCCCCeEEEcCcH---HHHHHHHHcC
Q 029161 23 SVLFRAAKHTVTFLIVDTYITSGMVVGLGS--G-QASAMAIEYMGRQLR----AGALKDVIGIPTSV---ASANEAAVAG 92 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgs--G-ST~~~la~~L~~~~~----~~~l~~itvVTnS~---~~a~~l~~~g 92 (198)
..|..=|++|+ ++|++||+|+++. | .+-..+.++|.+|.+ .+...+++++|... .....+...|
T Consensus 11 ~~KlvSaeEAv------~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g 84 (514)
T 4eu9_A 11 RSKVCPAETAS------ELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKAN 84 (514)
T ss_dssp GGGBCCHHHHH------TTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTT
T ss_pred HhCCCcHHHHH------HhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCC
Confidence 34555589999 9999999999974 2 233455666655422 23345788887532 1111222222
Q ss_pred ----------------------CCEEEc-----------CCCCcccEEEeecCccCCCCcceeecCCCCCcchhHHHHHH
Q 029161 93 ----------------------IPLDQY-----------RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKS 139 (198)
Q Consensus 93 ----------------------i~v~~l-----------~~~~~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~ 139 (198)
+..+.. .....+|++|+.+...|. ++++.-|... ... +.
T Consensus 85 ~i~~~~~~~~~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De-~Gnis~g~sv-----~~~--~~ 156 (514)
T 4eu9_A 85 GVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITE-DGGIVPTSSV-----GNS--QT 156 (514)
T ss_dssp CEEEEESCCCCHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECT-TCCEEECSBC-----BTH--HH
T ss_pred CEEEEEecCCCHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCC-CceEEecCCc-----chH--HH
Confidence 111110 122379999999999999 7998775433 222 34
Q ss_pred HHHhcCcEEEEEcCC
Q 029161 140 VLNAADKLVFMVSEN 154 (198)
Q Consensus 140 i~~~s~~~ivlaD~s 154 (198)
++++|+++|+-++..
T Consensus 157 ~~~~A~~VIvevn~~ 171 (514)
T 4eu9_A 157 FLNLAEKVIIEVNEW 171 (514)
T ss_dssp HHHHCSEEEEEEETT
T ss_pred HHHhCCeEEEEEecC
Confidence 457899999998864
No 43
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=95.68 E-value=0.048 Score=50.65 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=70.5
Q ss_pred HHHHHhcccccccc--CCCCCEEEECcch-hHH----HHHHHHHHHhhcCCCCCeEEEcCcHHHH--HH--HHHcCC---
Q 029161 28 AAKHTVTFLIVDTY--ITSGMVVGLGSGQ-ASA----MAIEYMGRQLRAGALKDVIGIPTSVASA--NE--AAVAGI--- 93 (198)
Q Consensus 28 IA~~Aa~~~~~~~~--I~~g~~IgLgsGS-T~~----~la~~L~~~~~~~~l~~itvVTnS~~~a--~~--l~~~gi--- 93 (198)
=|++|+ ++ |+|||+|+++... +-. .+.++|.++ .++++|++++|.-.. .+ +...|.
T Consensus 51 saeEAv------~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r----~~kdLtli~~s~g~~~~~l~~~~~~g~v~r 120 (519)
T 2hj0_A 51 SIHEAI------EKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKM----GIKDISIAPSSIANVHEPLIDHIKNGVVTN 120 (519)
T ss_dssp CHHHHH------HHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHT----TCCSEEEEESCCCGGGTTHHHHHHTTSEEE
T ss_pred CHHHHH------hcCCCCCCCEEEECCccCCchHHHHHHHHHHHhc----CCCCeEEEeecCCCcchhHHhHhhcCcEEE
Confidence 377888 88 9999999998762 223 556666654 357999999865322 11 112221
Q ss_pred ---------------------CEEE---------cC-CCCcccEEEeecCccCCCCccee--ecCCCCCcchhHHHHHHH
Q 029161 94 ---------------------PLDQ---------YR-DTSQIDFAFDDADIIEEGTLVAV--IGRQQPKGDESIIQEKSV 140 (198)
Q Consensus 94 ---------------------~v~~---------l~-~~~~iD~af~Gad~Vd~~~~~~i--kG~g~~~~~ea~~~ek~i 140 (198)
|... +. ....+|++|+.+...|. ++++. .|.. ...+.-....+
T Consensus 121 ~~~~~~g~~~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~-~Gnls~~~g~s---~~~s~~~~~~~ 196 (519)
T 2hj0_A 121 ITSSGLRDKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDA-YGNANGTRGKT---TCGSLGYAMID 196 (519)
T ss_dssp EEESBCHHHHHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECT-TSCEESSSSSS---CCSCCHHHHHH
T ss_pred EEecCCCcHHHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCC-CCcEEEecCcc---ccccchhhHHH
Confidence 1110 11 22479999999999999 78876 2321 00012223566
Q ss_pred HHhcCcEEEEEcCC
Q 029161 141 LNAADKLVFMVSEN 154 (198)
Q Consensus 141 ~~~s~~~ivlaD~s 154 (198)
+++|+++|+-+++.
T Consensus 197 a~~A~~VIaEVn~~ 210 (519)
T 2hj0_A 197 AKYADQVVIVTDTL 210 (519)
T ss_dssp HHHCSEEEEEESSB
T ss_pred HhhCCEEEEEeCCC
Confidence 67899999988763
No 44
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=95.34 E-value=0.0057 Score=51.45 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
.++++++.|+ .++.+.|+++++|||++|+|...++++|.... ..+++++|+
T Consensus 38 ~~~~l~~~aA--~~l~~~l~~~~viGla~G~T~~~~~~~l~~~~---~~~~v~~v~ 88 (255)
T 2okg_A 38 VKKEMGRAAV--ACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDS---KNRELLFVP 88 (255)
T ss_dssp HHHHHHHHHH--HHHHHHCCSEEEEEECCSHHHHHHHHHCCCCT---TCCEEEEEE
T ss_pred HHHHHHHHHH--HHHHHhCCCCCEEEECCcHHHHHHHHhhcccc---CCCCCEEEE
Confidence 4667888888 34557788999999999999999999997421 124777764
No 45
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=95.15 E-value=0.034 Score=45.26 Aligned_cols=59 Identities=15% Similarity=0.052 Sum_probs=42.0
Q ss_pred ccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHH-HhcCcEEEEEcCCccccC--CCCcccEEEec
Q 029161 104 IDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVL-NAADKLVFMVSENQYKGV--LDGSVPVLVQP 170 (198)
Q Consensus 104 iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~-~~s~~~ivlaD~sK~~~~--lg~~ipvEV~p 170 (198)
+|+.|+|||.|-. ++++.-=-|+ ..+ .+++ .....|||++..+||... +|..+|+|--+
T Consensus 52 Vd~VivGAd~v~~-nG~v~nkiGT-----~~~--Al~Ak~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~ 113 (191)
T 1w2w_B 52 IKAAFVGADRIVR-NGDTANKIGT-----LQL--AVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERN 113 (191)
T ss_dssp EEEEEECCSEECT-TSCEEEETTH-----HHH--HHHHHHHTCEEEEECCGGGBCSSCCSGGGCCCCBCC
T ss_pred CCEEEECccEEec-CCCEEecccH-----HHH--HHHHHHcCCCEEEecccceeeeccCCcceeecccCC
Confidence 9999999999988 7765433333 222 2222 345789999999999975 46678888655
No 46
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=95.06 E-value=0.011 Score=49.86 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=38.3
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEEC-cchhHHHHHHHHHHHhhcCCCC-CeEEEc
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLG-SGQASAMAIEYMGRQLRAGALK-DVIGIP 79 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLg-sGST~~~la~~L~~~~~~~~l~-~itvVT 79 (198)
.++++++.|+ .++.+.|+++++|||+ +|+|...++++|..... .+ ++++|+
T Consensus 39 ~~~~l~~~aA--~~l~~~l~~~~viGla~~G~T~~~~~~~l~~~~~---~~~~v~~v~ 91 (264)
T 2r5f_A 39 IKQAIGSAAA--HYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPG---KQSAQEVVQ 91 (264)
T ss_dssp HHHHHHHHHH--HHHHHHCCTTCEEEECTTCHHHHHHHHTCCC--C---CCCCSEEEE
T ss_pred HHHHHHHHHH--HHHHHhCCCCCEEEECcchHHHHHHHHhhccccC---CCCCcEEEE
Confidence 4677888888 3455778899999999 99999999999975311 14 677764
No 47
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=95.03 E-value=0.31 Score=45.05 Aligned_cols=122 Identities=13% Similarity=0.110 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhccccccccC------CCCCEEEECcchhHHHHHHHHHHHhh----------------------cCCCCC
Q 029161 23 SVLFRAAKHTVTFLIVDTYI------TSGMVVGLGSGQASAMAIEYMGRQLR----------------------AGALKD 74 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I------~~g~~IgLgsGST~~~la~~L~~~~~----------------------~~~l~~ 74 (198)
+..++||+.++ ++| +||+++=+|.|.....++.+|.+..+ .|.+.+
T Consensus 248 ~~~~~IA~~~a------~~i~~~g~~~dG~~lqlGIG~ip~aV~~~l~~~~~~l~i~se~g~~g~~d~~~~l~e~G~i~~ 321 (509)
T 1xr4_A 248 PRELLIARQAA------NVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKA 321 (509)
T ss_dssp HHHHHHHHHHH------HHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHHTTSBSC
T ss_pred hHHHHHHHHHH------HHHHhcCcCCCCCEEEeccChHHHHHHHHhhhhcccceeecccccCCcCCccHhHHhCCCccC
Confidence 56788999999 888 99999999999888888888877511 122212
Q ss_pred e-EEEcCcHHHHHHHHHcCCCEEEc-----------CCCCcccEEEeecCccCCCCcce----------eecCCCCCcch
Q 029161 75 V-IGIPTSVASANEAAVAGIPLDQY-----------RDTSQIDFAFDDADIIEEGTLVA----------VIGRQQPKGDE 132 (198)
Q Consensus 75 i-tvVTnS~~~a~~l~~~gi~v~~l-----------~~~~~iD~af~Gad~Vd~~~~~~----------ikG~g~~~~~e 132 (198)
. .+.+-.+-....+....-.+.+. ....++|++|.||=+||. .+++ +.|-||
T Consensus 322 ~~~~~~f~~g~~~~~~~n~~~~~~~~~~~~n~~~~~~~~~~ldiai~galevD~-~G~vn~~~~~~g~~~~G~GG----- 395 (509)
T 1xr4_A 322 LLDTQSFDGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDV-NFNVNVMTGSNGVLRGASGG----- 395 (509)
T ss_dssp EEEEEECSHHHHHHHHHCTTEEECCHHHHTCTTCSCCGGGGCSEEEECCSEECT-TCCEECSBCTTSCBCSBCTT-----
T ss_pred CcceeEeeccHHHHHHhCCcceEEeccccccCcchhhhhcCCCeEEeeeEEEcc-CCceeeeeccCCeEeccccc-----
Confidence 1 12333333332222211111111 111368999999999997 4532 344455
Q ss_pred hHHHHHHHHHhcCcEEEEEcC-----CccccCC
Q 029161 133 SIIQEKSVLNAADKLVFMVSE-----NQYKGVL 160 (198)
Q Consensus 133 a~~~ek~i~~~s~~~ivlaD~-----sK~~~~l 160 (198)
+. -++ ..|+++|+...| ||+++.+
T Consensus 396 ~~---D~~-~gA~~sii~~~~t~~~~skIV~~~ 424 (509)
T 1xr4_A 396 HS---DTA-AGADLTIITAPLVRGRIPCVVEKV 424 (509)
T ss_dssp HH---HHH-HHSSEEEEECCSEETTEESBCSSC
T ss_pred HH---HHh-hccCeEEEEEcccCCCCCeEeeCC
Confidence 22 333 577888888776 5777765
No 48
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=93.88 E-value=0.0084 Score=52.74 Aligned_cols=51 Identities=6% Similarity=-0.068 Sum_probs=40.0
Q ss_pred cCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHH-HHHHH
Q 029161 20 NGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVAS-ANEAA 89 (198)
Q Consensus 20 ~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~-a~~l~ 89 (198)
.+.++|++||++|+ + +++ |.|||+.++++.|.+. .++|+|||+... +..+.
T Consensus 97 ~~~~eK~~Ia~~aa------~---~~~----d~gtt~~~~a~~Ls~~------~~~tvv~~~~~~~~~~L~ 148 (338)
T 1stz_A 97 ETSEADLAVETFKS------M---PLA----DPEKVLFLAGNLLARL------TEGYVLIERPNTRDLKIL 148 (338)
T ss_dssp TSCCCCHHHHTCCC------T---TBC----CHHHHHHHHHHHHHHH------HTCEEEEECCCGGGCBCC
T ss_pred CCHHHHHHHHHHHh------h---cCC----CHHHHHHHHHHHHhcc------CCeEEEEeCCHHHHHHhh
Confidence 55678999999887 4 566 9999999999999864 379988888764 55554
No 49
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=93.54 E-value=0.15 Score=47.05 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH-----------HHHH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN-----------EAAV 90 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~-----------~l~~ 90 (198)
.+.++.||++|| ..|+||++|.||.| --..++..+.+. +++++.|=+-.+-. .+.+
T Consensus 260 ~~~~~~Ia~raA------~el~dG~~vnlGIG-iP~~v~~~~~~~------~~l~l~~E~G~~g~~p~~~~~~~d~~~in 326 (481)
T 3k6m_A 260 DNVRERIIKRAA------LEFEDGMYANLGIG-IPLLASNFISPN------MTVHLQSENGILGLGPYPLQNEVDADLIN 326 (481)
T ss_dssp --CHHHHHHHHG------GGCCTTEEEEECTT-HHHHHGGGCCTT------SCEEEEETTTEEEECCCCCGGGCCTTCBC
T ss_pred CCHHHHHHHHHH------HhcCCCCEEEEccC-HHHHHHhhhccC------CcEEEEECCcEeCCccCCCCCccCccccc
Confidence 456888999999 99999999999999 344455555432 35655543211000 0001
Q ss_pred cC---CCEE----EcC--------CCCcccEEEeecCccCCCCcce---------eecCCCCCcchhHHHHHHHHHhc-C
Q 029161 91 AG---IPLD----QYR--------DTSQIDFAFDDADIIEEGTLVA---------VIGRQQPKGDESIIQEKSVLNAA-D 145 (198)
Q Consensus 91 ~g---i~v~----~l~--------~~~~iD~af~Gad~Vd~~~~~~---------ikG~g~~~~~ea~~~ek~i~~~s-~ 145 (198)
.| +... .+. +..++|++|+|+-+||. .+++ +.|.|| +. -++ ..| +
T Consensus 327 ~Gk~~~t~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~-~Gnvn~~~~pg~~~~G~GG-----~~---D~~-~ga~~ 396 (481)
T 3k6m_A 327 AGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSK-YGDLANWMIPGKLVKGMGG-----AM---DLV-SSAKT 396 (481)
T ss_dssp TTSBBCCEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEET-TCCEECSCBTTTBCSCCTT-----HH---HHT-CCTTS
T ss_pred CCCceEeccccceecCCHHHeeeecCCCeEEEEechHhccC-CCCccccccCCceeecCCc-----ch---hhh-ccCCc
Confidence 11 1110 011 11379999999999997 5643 455566 32 222 456 5
Q ss_pred cEEEEEcCC
Q 029161 146 KLVFMVSEN 154 (198)
Q Consensus 146 ~~ivlaD~s 154 (198)
++|+...|+
T Consensus 397 k~ii~~~~t 405 (481)
T 3k6m_A 397 KVVVTMEHS 405 (481)
T ss_dssp EEEEECCSB
T ss_pred eEEEEEeeE
Confidence 888888876
No 50
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=93.39 E-value=0.41 Score=44.47 Aligned_cols=110 Identities=12% Similarity=0.075 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHH---HHHHcCCC---EEE
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN---EAAVAGIP---LDQ 97 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~---~l~~~gi~---v~~ 97 (198)
..++||+.++ ++|+||+++-+|.| .-..++..|.+.. ..+++++.|=+-.... .-...++. -..
T Consensus 287 ~~~~Ia~~~A------~~i~dG~~v~lGiG-iP~av~~~l~~~~---~~~~l~~~~E~G~~g~~~~~g~~~g~~~~~~~~ 356 (531)
T 2ahu_A 287 QRKLVARRAL------FEMRKGAVGNVGVG-IADGIGLVAREEG---CADDFILTVETGPIGGITSQGIAFGANVNTRAI 356 (531)
T ss_dssp HHHHHHHHHH------TTCCTTCEEEECSS-TTTTHHHHHHHHT---CGGGSEEBCTTSEESCBCC-----CCCBSCSEE
T ss_pred HHHHHHHHHH------HhccCCCEEEecCc-HHHHHHHHHHhcC---CCCCeEEEEccceecCccCCCccceeEECHHHh
Confidence 4778999999 99999999999999 6567777877620 0124554442100000 00000110 001
Q ss_pred cC--------CCCcccEEEeecCccCCCCcce--------eecCCCCCcchhHHHHHHHHHhcCcEEEEEcC
Q 029161 98 YR--------DTSQIDFAFDDADIIEEGTLVA--------VIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 153 (198)
Q Consensus 98 l~--------~~~~iD~af~Gad~Vd~~~~~~--------ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~ 153 (198)
+. +..++|++|+|+-+||. .+++ +.|.|| +. -+. ..|+++|+...|
T Consensus 357 ~~~~~~f~~~~~g~vdvailga~eVD~-~Gnvn~~~~G~~~~G~GG-----~~---D~~-~gA~~~i~~~~~ 418 (531)
T 2ahu_A 357 LDMTSQFDFYHGGGLDVCYLSFAEVDQ-HGNVGVHKFNGKIMGTGG-----FI---DIS-ATSKKIIFCGTL 418 (531)
T ss_dssp CCHHHHHHHHHTTCCSEEEEECSEEET-TSCEECSEETTEECBCTT-----HH---HHH-TTCSEEEEECCS
T ss_pred cchhhhhheecCCCeEEEEeChHHhCC-CCcchhhccCCceecCCc-----ch---hhh-cCCCeEEEEecc
Confidence 11 11379999999999998 6654 566666 32 233 577888888753
No 51
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=93.33 E-value=0.49 Score=43.85 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhccccccccC------CCCCEEEECcchhHHHHHHHHHHH
Q 029161 23 SVLFRAAKHTVTFLIVDTYI------TSGMVVGLGSGQASAMAIEYMGRQ 66 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I------~~g~~IgLgsGST~~~la~~L~~~ 66 (198)
+..++||+.|+ ++| +||+++-+|.|.....++..|.++
T Consensus 251 ~~~~~IA~~~a------~~i~~~g~l~dG~~lqlGiG~ip~aV~~~L~~~ 294 (519)
T 2hj0_A 251 PKELLIAEYAA------KVITSSPYYKEGFSFQTGTGGASLAVTRFMREQ 294 (519)
T ss_dssp HHHHHHHHHHH------HHHHTSTTCSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH------HHHHhcccCCCCCEEEeccChHHHHHHHHHhhh
Confidence 56777999999 774 999999999998888888888765
No 52
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=89.15 E-value=0.38 Score=44.26 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHHhccccccccCCCCCEEEECcc---hhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 29 AKHTVTFLIVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 29 A~~Aa~~~~~~~~I~~g~~IgLgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+++|+ +.|+|||+|++|+- .+-..++++|.++ ..+++|+|.|+
T Consensus 7 ~~eAv------~~I~DG~ti~~gGf~~~g~P~~li~al~~~----~~kdLt~v~~~ 52 (481)
T 3k6m_A 7 AVEAV------KDIPNGATVLVGGFGLCGIPENLIGALLKT----GVKELTAVSNN 52 (481)
T ss_dssp HHHHH------TTCCTTCEEEECCBTTBTCCHHHHHHHHHH----CCCSEEEECSC
T ss_pred HHHHH------hhCCCCCEEEECCccccCcHHHHHHHHHHc----CCCceEEEEeC
Confidence 56788 88999999999862 2358888888765 23799999885
No 53
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=88.79 E-value=0.35 Score=41.93 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=29.7
Q ss_pred ccCCCCCEEEECcc---hhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 40 TYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 40 ~~I~~g~~IgLgsG---ST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
++|+|||+|++|.- .+-..++++|.++ .++++|++.++
T Consensus 12 ~~IkdG~tV~~gGf~~~g~P~~li~aL~~~----~~~dLtlv~~~ 52 (317)
T 1poi_A 12 KYVHSGDHIALGGFTTDRKPYAAVFEILRQ----GITDLTGLGGA 52 (317)
T ss_dssp HHCCTTCEEEECSBTTBSCCHHHHHHHHHT----TCCCEEEECSE
T ss_pred hhCCCCCEEEECCccccCcHHHHHHHHHhC----CCCCEEEEEEC
Confidence 67999999999863 3467888888864 35799999654
No 54
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=84.38 E-value=1 Score=41.12 Aligned_cols=47 Identities=9% Similarity=0.112 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
.+..++||+.++ ++|+||.++=+|.|+...+++..|.++ +++.+-|-
T Consensus 218 ~~~~~~Ia~~va------~~i~dG~~lQ~GiG~ip~Av~~~L~~~------~~lgi~tE 264 (455)
T 3qli_A 218 IPEYTSISHIIA------DLVPDGACLQMGVGALPNLVCGVLKDR------NDLGIHTE 264 (455)
T ss_dssp CTHHHHHHHHHH------HTCCTTCEEEECSSHHHHHHHHHGGGC------CSBEEBCS
T ss_pred ChHHHHHHHHHH------HHhcCCCeEEeccchHHHHHHHhcCcC------CCeEEEcC
Confidence 456678999999 999999999999999999999999875 57877664
No 55
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=82.59 E-value=1.6 Score=35.45 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=32.9
Q ss_pred HHHHHHHHhccccccccCC--CCCEEEECcchhHHHHHHHHHHHhhcC--CCCCeEEE
Q 029161 25 LFRAAKHTVTFLIVDTYIT--SGMVVGLGSGQASAMAIEYMGRQLRAG--ALKDVIGI 78 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~--~g~~IgLgsGST~~~la~~L~~~~~~~--~l~~itvV 78 (198)
++++++.|+. ++.+.++ ++++|+|.+|+|...+.+.|.+..+.+ ..++++++
T Consensus 9 ~~~l~~~aA~--~l~~~i~~~~~~~i~lsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~ 64 (242)
T 2bkx_A 9 YEELSQIAAR--ITADTIKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTV 64 (242)
T ss_dssp HHHHHHHHHH--HHHHHHHHCTTCEEEECCSSTTHHHHHHHHHHHHHSCCCCTTCEEE
T ss_pred HHHHHHHHHH--HHHHHHHHCCCeEEEECCCCCHHHHHHHHHHHhhccCCChhheEEE
Confidence 3445666652 1123444 468999999999999999997532211 12467666
No 56
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=82.48 E-value=0.79 Score=38.03 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=25.6
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhcC--CCCCeEEE
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRAG--ALKDVIGI 78 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~~--~l~~itvV 78 (198)
+.+|+|.+|+|...+.+.|.+..+.+ ..++++++
T Consensus 34 ~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~ 69 (266)
T 1fs5_A 34 PFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTF 69 (266)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEE
T ss_pred ceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEE
Confidence 78999999999999999998642222 23477776
No 57
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=82.05 E-value=1.2 Score=40.56 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 21 GSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 21 ~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
-.+..++||+.++ ++|+||.++=+|.|..-..++..|.+. +++.+-|--
T Consensus 191 ~~~~~~~IA~~~a------~~i~dG~~lqlGIG~ip~aV~~~L~~~------~~l~~~tE~ 239 (448)
T 3gk7_A 191 IGEVEAAIGKHCA------SLIEDGSTLQLGIGAIPDAVLSQLKDK------KHLGIHSEM 239 (448)
T ss_dssp CCHHHHHHHHHHH------TTCCTTCEEEBCSSHHHHHHHHTCTTC------CSBEEEEEE
T ss_pred CCcHHHHHHHHHH------HHccCCCEEEeccCcHHHHHHHHhhhc------CCeeEEcCC
Confidence 3567788999999 999999999999999989899988763 355555443
No 58
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=81.84 E-value=0.91 Score=41.00 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
.+..++||+.++ ++|+||+++=+|.|.....++..|.+. +++.+-|
T Consensus 187 ~~~~~~Ia~~~a------~~i~dg~~lqlGiG~ip~av~~~l~~~------~~l~i~t 232 (436)
T 2oas_A 187 DAVSLAIGQHVA------ELVRDGDCLQMGIGAIPDAVLSCLTGH------KDLGVHT 232 (436)
T ss_dssp CHHHHHHHHHHH------HHCCTTCEEECCSSHHHHHHHHTCTTC------CSBEEBC
T ss_pred ChHHHHHHHHHH------HhcCCCCEEeecCcHHHHHHHHHHhhc------CceeEEe
Confidence 467888999999 999999999999999999999999765 4676644
No 59
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=81.59 E-value=0.84 Score=36.98 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=33.0
Q ss_pred HHHHHHHHhccccccccCC-CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 25 LFRAAKHTVTFLIVDTYIT-SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~-~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
++++++.|+. ++.+.++ .+++|+|.+|+|...+.+.|.+.. -..++++++.
T Consensus 10 ~~~l~~~aA~--~l~~~i~~~~~~i~ls~G~T~~~~~~~L~~~~--~~~~~v~v~~ 61 (234)
T 2ri0_A 10 KTEGSKVAFR--MLEEEITFGAKTLGLATGSTPLELYKEIRESH--LDFSDMVSIN 61 (234)
T ss_dssp HHHHHHHHHH--HHHHHHHTTCCEEEECCSSTTHHHHHHHHTSC--CCCTTCEEEE
T ss_pred HHHHHHHHHH--HHHHHHHhCCCEEEEcCCCCHHHHHHHHHhcC--CChhheEEEe
Confidence 4456666662 2224444 457999999999999999997420 0124677665
No 60
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=81.24 E-value=1.4 Score=39.92 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 21 GSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 21 ~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
-.+..++||+.++ ++|+||.++=+|.|....+++..|.++ +++.+-|--
T Consensus 195 ~~~~~~~Ia~~~a------~~i~dG~~lq~GiG~ip~AV~~~L~~~------~~lgi~tE~ 243 (434)
T 3eh7_A 195 IGEVEEAIGRNCA------ELIEDGATLQLGIGAIPDAALLFLKDK------KDLGIHTEM 243 (434)
T ss_dssp CCHHHHHHHHHHH------HTCCTTCEEECCSSHHHHHHHHTTTTC------CSBEEECSE
T ss_pred CChHHHHHHHHHH------HhccCCCEEEeccchHHHHHHHHhhhc------CCceEEccC
Confidence 3466778999999 999999999999999999898888753 356555543
No 61
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=77.79 E-value=1.8 Score=36.59 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.2
Q ss_pred CEEEECcchhHHHHHHHHHHHhhcCC--CCCeEEEcC
Q 029161 46 MVVGLGSGQASAMAIEYMGRQLRAGA--LKDVIGIPT 80 (198)
Q Consensus 46 ~~IgLgsGST~~~la~~L~~~~~~~~--l~~itvVTn 80 (198)
.+|+|.+|+|...+.+.|.+..+.+. .++++++.-
T Consensus 35 ~~lglsgGsTp~~~~~~L~~~~~~~~i~~~~v~v~~l 71 (289)
T 1ne7_A 35 FTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNM 71 (289)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEES
T ss_pred EEEEEcCCccHHHHHHHHHhhhhccCCCchheEEEeC
Confidence 68999999999999999985422221 246776533
No 62
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=73.87 E-value=12 Score=27.34 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=40.4
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
+.++.+|.|..-..+++.|.+.. .+++++..+-.....+...|++++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g-----~~v~vid~~~~~~~~~~~~g~~~i~ 55 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD-----IPLVVIETSRTRVDELRERGVRAVL 55 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT-----CCEEEEESCHHHHHHHHHTTCEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCC-----CCEEEEECCHHHHHHHHHcCCCEEE
Confidence 56899999999999999998641 3799999999998888888887664
No 63
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=69.70 E-value=0.2 Score=35.31 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMA 59 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~l 59 (198)
.+.|.+-+++++ +++|.+|-..+.-||||+++-
T Consensus 32 P~~k~r~vKK~~-----~~LV~Eg~leywSSGSTTmyg 64 (78)
T 1ucr_A 32 PDMKQREVKKIL-----TALVNDEVLEYWSSGSTTMYG 64 (78)
T ss_dssp TTSCHHHHHHHH-----HHHHHTTSEEEEEETTEEEEE
T ss_pred cccCHHHHHHHH-----HHHHhcCceEEEecCCeEEEe
Confidence 356677788888 599999999999999998763
No 64
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=67.99 E-value=11 Score=28.62 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEE---CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCC
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGL---GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgL---gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~ 100 (198)
.|+..++.++. ..+++-+.+++-.. ..++.+-..+..++.. .+.++|||+......+...|++++.+.+
T Consensus 53 ~~r~rGr~gL~--iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~------~~~~lvTnD~~L~kvA~~~GI~Vl~l~~ 124 (134)
T 3ix7_A 53 LRRAKGRRGLE--TLERLREAAPLEVLETTPKGESVDEKLLFLARD------LEAALVTNDHALLQMARIYGVKALSIQA 124 (134)
T ss_dssp HHHHHHHHHHH--HHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHH------TTCEEEESCHHHHHHHHHTTCCEEEHHH
T ss_pred hhHHHHHHHHH--HHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHH------hCCEEEeCCHHHHHHHHHCCCeEEehHH
Confidence 45666777761 11111112223333 3456677767777654 2689999999999999999999987643
No 65
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.62 E-value=33 Score=25.70 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=39.4
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
...++.+|.|..-..+++.|.+.. | .+++++..+-.....+...|+.++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~--g--~~V~vid~~~~~~~~~~~~g~~~~~ 88 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARY--G--KISLGIEIREEAAQQHRSEGRNVIS 88 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHH--C--SCEEEEESCHHHHHHHHHTTCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhcc--C--CeEEEEECCHHHHHHHHHCCCCEEE
Confidence 446888999999999999997530 1 3799999998887778778877653
No 66
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=57.29 E-value=51 Score=29.03 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=41.4
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEc
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQY 98 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l 98 (198)
+.+|.+|.|..-..+++.|.+.. .++++|..+......++..|++++.-
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g-----~~vvvId~d~~~v~~~~~~g~~vi~G 53 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSG-----VKMVVLDHDPDHIETLRKFGMKVFYG 53 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT-----CCEEEEECCHHHHHHHHHTTCCCEES
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCHHHHHHHHhCCCeEEEc
Confidence 45899999999999999998641 37999999999988888889887753
No 67
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=55.24 E-value=7.5 Score=31.66 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=19.2
Q ss_pred CCEEEECcchhHHHHHHHHHH
Q 029161 45 GMVVGLGSGQASAMAIEYMGR 65 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~ 65 (198)
..+|+|.+|||...+.+.|.+
T Consensus 30 ~~~l~lsgGstp~~~~~~L~~ 50 (238)
T 1y89_A 30 PVHISLSGGSTPKMLFKLLAS 50 (238)
T ss_dssp CEEEEECCSHHHHHHHHHHTS
T ss_pred CEEEEECCCccHHHHHHHHHh
Confidence 679999999999999999975
No 68
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=54.75 E-value=54 Score=23.25 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=38.4
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 97 (198)
..++.+|.|..-..+++.|.+. | .+++++..+-.....+...+.+++.
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~---g--~~V~~id~~~~~~~~~~~~~~~~~~ 54 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA---G--KKVLAVDKSKEKIELLEDEGFDAVI 54 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC---C--CeEEEEECCHHHHHHHHHCCCcEEE
Confidence 3588889999999999999864 1 3799999998888878777776554
No 69
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.36 E-value=95 Score=25.05 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhh---------cC----------CCCCeEEEcCcH
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLR---------AG----------ALKDVIGIPTSV 82 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~---------~~----------~l~~itvVTnS~ 82 (198)
.-+|...|..++ ..+.+|+++++||-.+....+...+.+.. .| .++++.+|++--
T Consensus 48 T~~~L~~A~~~i------~~~~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~ 121 (202)
T 3j20_B 48 TDERLKVAGKFL------AKFEPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPR 121 (202)
T ss_dssp HHHHHHHHHHHH------HHSCSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTT
T ss_pred HHHHHHHHHHHH------HhhCCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeCCc
Confidence 345666666666 45689999999999888777666654311 11 135788887743
Q ss_pred ---HHHHHHHHcCCCEEEcCCC----CcccEEEeecC
Q 029161 83 ---ASANEAAVAGIPLDQYRDT----SQIDFAFDDAD 112 (198)
Q Consensus 83 ---~~a~~l~~~gi~v~~l~~~----~~iD~af~Gad 112 (198)
+...++...|||++.+-+. ..+|..+=+-|
T Consensus 122 ~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Nd 158 (202)
T 3j20_B 122 ADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNN 158 (202)
T ss_dssp TSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCC
T ss_pred cchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCC
Confidence 3444777889998876432 24777776643
No 70
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=49.27 E-value=34 Score=26.20 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC
Q 029161 54 QASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 54 ST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~ 101 (198)
..+-..+..|+.. .+.+++||+......+...|++++.+.+.
T Consensus 92 ~~vD~~l~~lA~~------~~a~lvTnD~~l~kvA~~~GI~V~~l~~~ 133 (142)
T 3i8o_A 92 GEIDAMIRKVAKE------TNSILLTSDWIQYNLAKAQGIEAYFLEAA 133 (142)
T ss_dssp SSHHHHHHHHHHH------TTCEEEESCHHHHHHHHHTTCCEEECCCC
T ss_pred CcHHHHHHHHHHH------hCCEEEcCCHHHHHHHHHcCCEEEEeccc
Confidence 4555666667654 27899999999999999999999988753
No 71
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=48.25 E-value=29 Score=31.64 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=29.0
Q ss_pred ccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 40 TYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 40 ~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
.+++||.+|-+|.|....+++..|.+. ..+++.+-|
T Consensus 258 ~l~~dG~~lQ~GiG~ip~AV~~~L~~~----~~~~l~~~t 293 (514)
T 4eu9_A 258 RLPPSLLPLQSGVGNVANAVLEGLKEG----PFENLVGYS 293 (514)
T ss_dssp SSCTTCCCEECCCSHHHHHHHHHHHHS----SCCSEEEES
T ss_pred cccCCCceeccCCCchHHHHHHHHhhc----CCcCceEee
Confidence 488999999999999999999999874 124666655
No 72
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=43.13 E-value=19 Score=33.10 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHhcccccccc----CCCC------CEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 21 GSSVLFRAAKHTVTFLIVDTY----ITSG------MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 21 ~~~~K~~IA~~Aa~~~~~~~~----I~~g------~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
-.+..++||+.++ ++ |++| .++=+|.|+...+++..|.+.. .++++.+-|-
T Consensus 224 ~~~~~~~Ia~~~a------~~i~~~~~~G~l~~~~~~lq~GiG~ip~aV~~~l~~~~---~~~~l~i~te 284 (506)
T 2nvv_A 224 LDPVTQAIGDNVA------AFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNP---DIPAFNMYTE 284 (506)
T ss_dssp CCHHHHHHHHHHH------HHHHHHHHHTSSCTTCCCEEECSSHHHHHHHHHHHHCT---TSCCEEEECS
T ss_pred CChHHHHHHHHHH------HHHHhhhhcCcccCCCceEEeCCCHHHHHHHHHhhhcC---CcccceEEec
Confidence 3567888999999 63 3345 9999999999999999998741 0236666544
No 73
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=40.78 E-value=78 Score=25.64 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=29.6
Q ss_pred CCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHH
Q 029161 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVA 83 (198)
Q Consensus 42 I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~ 83 (198)
++..-++.+|+|......++.|.+. | -++|||...+.
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~---G--A~VtVvap~~~ 65 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQE---G--AAITVVAPTVS 65 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGG---C--CCEEEECSSCC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC---C--CEEEEECCCCC
Confidence 4566799999999999999999764 2 37999987754
No 74
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=40.27 E-value=1.5e+02 Score=25.12 Aligned_cols=68 Identities=21% Similarity=0.178 Sum_probs=40.0
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC-------------CcccE
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT-------------SQIDF 106 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~-------------~~iD~ 106 (198)
-+++|++|.+ |+|..=..+++..... | .+.+.++..|-.-...+++.|..++..... ..+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~---G-a~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLL---G-AAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---T-CSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---C-CCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 4678997766 6655444444444322 1 124656666666666778888765543221 14799
Q ss_pred EEeecC
Q 029161 107 AFDDAD 112 (198)
Q Consensus 107 af~Gad 112 (198)
+|+.+.
T Consensus 258 vid~~G 263 (398)
T 1kol_A 258 AVDAVG 263 (398)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998664
No 75
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=39.42 E-value=43 Score=26.80 Aligned_cols=55 Identities=13% Similarity=-0.094 Sum_probs=42.1
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCC
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~ 100 (198)
+-|.|.+-|++|+..|.+.+.+... .+.++.++.=+-.++..+.+.|++.+...+
T Consensus 185 ~~d~v~ftS~s~v~~~~~~~~~~~~--~l~~~~~~aIG~~Ta~~l~~~G~~~~~~a~ 239 (254)
T 4es6_A 185 RLNGLVVSSGQGLQNLYQLAAADWP--EIGRLPLFVPSPRVAEMARELGAQRVIDCR 239 (254)
T ss_dssp TCCEEECCSHHHHHHHHHHHGGGHH--HHTTSCEEESSHHHHHHHHHTTCSSEEECS
T ss_pred CCCEEEEcCHHHHHHHHHHhhHHHH--HHhCCeEEEECHHHHHHHHHcCCCceEECC
Confidence 3479999999999999998864210 124678899999999999999987654433
No 76
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=39.39 E-value=19 Score=32.89 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcccccccc----CCCC------CEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 22 SSVLFRAAKHTVTFLIVDTY----ITSG------MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~----I~~g------~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
.+..++||+.++ ++ |++| .++=+|.|+....++..|.+. .++++.+-|-
T Consensus 230 ~~~~~~Ia~~~a------~~i~~~~~~G~l~~~~~~lqlGiG~ip~aV~~~l~~~----~~~~l~~~se 288 (497)
T 2g39_A 230 DGETQAIANHLI------DFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIES----PFENLTMYSE 288 (497)
T ss_dssp CHHHHHHHHHHH------HHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSS----SCCSEEEECS
T ss_pred ChHHHHHHHHHH------HHHHhhhhcCCcccCCceEEeeEcHHHHHHHHHhhhc----ccccceEEee
Confidence 567888999999 63 4566 999999999999999998753 2346666555
No 77
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=37.48 E-value=31 Score=29.51 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=31.5
Q ss_pred cccEEEeecCccCCCCcceeecCCCCCcchhHHHHHHHHHhcCcEEEEEcC
Q 029161 103 QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 153 (198)
Q Consensus 103 ~iD~af~Gad~Vd~~~~~~ikG~g~~~~~ea~~~ek~i~~~s~~~ivlaD~ 153 (198)
++|++|+-+...|. ++|+.-++.. . -...++++|+++|+-++.
T Consensus 171 ~~DVAlI~a~~aD~-~GN~~~~~~~-----~--~~~~~a~aAk~VIveVe~ 213 (317)
T 1poi_A 171 QVDVAIIHAQQASP-DGTVRIWGGK-----F--QDVDIAEAAKYTIVTCEE 213 (317)
T ss_dssp CCSEEEEEEEEECT-TCCEECCSCC-----T--THHHHHHHSSEEEEEEEE
T ss_pred CCcEEEEEeccCCC-CceEEEecCC-----C--chHHHHhhCCEEEEEEcC
Confidence 79999999999999 7888753311 1 124556789988888765
No 78
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=36.74 E-value=52 Score=26.87 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=40.4
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLD 96 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~ 96 (198)
+-|.|.+-|++|+..|.+.+.+... ..+.++.++.=+-.++..|.+.|++..
T Consensus 210 ~~d~v~ftS~~~v~~f~~~~~~~~~-~~l~~~~i~aIG~~Ta~~l~~~G~~~~ 261 (286)
T 1jr2_A 210 VPASITFFSPSGLTYSLKHIQELSG-DNIDQIKFAAIGPTTARALAAQGLPVS 261 (286)
T ss_dssp SCSEEEESSHHHHHHHHHHHHHHHG-GGGGGSEEEESSHHHHHHHHHTTCCCS
T ss_pred CCCEEEEEChHHHHHHHHHHhhhcc-ccccCCEEEEECHHHHHHHHHcCCCce
Confidence 4589999999999999988864110 113468899999999999999997643
No 79
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=36.56 E-value=34 Score=28.01 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCCCCE---EEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH
Q 029161 42 ITSGMV---VGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89 (198)
Q Consensus 42 I~~g~~---IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~ 89 (198)
|++|++ ||-|+|+|+.++++..... -.+..|-.|-.....+.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~------G~V~avD~s~~~~~~l~ 119 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPR------GRIYGVEFAPRVMRDLL 119 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTT------CEEEEEECCHHHHHHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCC------ceEEEEeCCHHHHHHHH
Confidence 789995 3456678999999888542 14777777777655553
No 80
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=36.43 E-value=1.8e+02 Score=24.60 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=40.5
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC-------------CcccE
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT-------------SQIDF 106 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~-------------~~iD~ 106 (198)
-+++|++|.+ |+|..=..+++.+... | ...++++..|-.-...+++.|..++..... ..+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~---G-a~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dv 257 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLL---G-AACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDC 257 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHH---T-CSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---C-CCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCE
Confidence 4678987666 7665444444444332 1 124666666666666777888765543211 14899
Q ss_pred EEeecCc
Q 029161 107 AFDDADI 113 (198)
Q Consensus 107 af~Gad~ 113 (198)
+|+.+.+
T Consensus 258 vid~~g~ 264 (398)
T 2dph_A 258 GVDAVGF 264 (398)
T ss_dssp EEECSCT
T ss_pred EEECCCC
Confidence 9887653
No 81
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=36.22 E-value=21 Score=29.59 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=18.7
Q ss_pred CCEEEECcchhHHHHHHHHHH
Q 029161 45 GMVVGLGSGQASAMAIEYMGR 65 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~ 65 (198)
..+|+|.+|||...+.+.|.+
T Consensus 38 ~~~l~LsgGstp~~ly~~L~~ 58 (267)
T 3css_A 38 PVVLALSGGSTPKRLYEELHE 58 (267)
T ss_dssp CEEEEECCSSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHH
Confidence 469999999999999998875
No 82
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=36.11 E-value=25 Score=26.61 Aligned_cols=36 Identities=6% Similarity=-0.117 Sum_probs=24.2
Q ss_pred HHHHHHHHHhccccccccCCCCCEEEE-CcchhHHHHHHHHHHH
Q 029161 24 VLFRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAMAIEYMGRQ 66 (198)
Q Consensus 24 ~K~~IA~~Aa~~~~~~~~I~~g~~IgL-gsGST~~~la~~L~~~ 66 (198)
.++.+.+.+. +..++||+|.+ |+|. ...+++.|.+.
T Consensus 124 d~~eai~~~~------~~~~~gDvVLv~Gsg~-~~~~~~~l~~~ 160 (163)
T 3mvn_A 124 DVDELVMRIV------QQAKPNDHILIMSNGA-FGGIHQKLLTA 160 (163)
T ss_dssp SHHHHHHHHH------HHCCTTCEEEEECSSC-GGGHHHHHHHH
T ss_pred CHHHHHHHHH------HhCCCCCEEEEECCCC-HHHHHHHHHHH
Confidence 3445566666 78899997666 8887 55566666553
No 83
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=34.60 E-value=1.5e+02 Score=24.21 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=39.4
Q ss_pred ccCCCCCEEEE-C-cchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCC-EEEcCCC-------CcccEEEe
Q 029161 40 TYITSGMVVGL-G-SGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIP-LDQYRDT-------SQIDFAFD 109 (198)
Q Consensus 40 ~~I~~g~~IgL-g-sGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~-v~~l~~~-------~~iD~af~ 109 (198)
..+++|++|.+ | +|..=..+++.+... |. .+.++.++-. ...+++.|.. ++...+. ..+|++|+
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~---Ga--~vi~~~~~~~-~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQK---GT--TVITTASKRN-HAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHT---TC--EEEEEECHHH-HHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHc---CC--EEEEEeccch-HHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 35789999988 3 566555555555432 21 3444444433 5566778876 4443332 25899998
Q ss_pred ecC
Q 029161 110 DAD 112 (198)
Q Consensus 110 Gad 112 (198)
.+.
T Consensus 222 ~~g 224 (321)
T 3tqh_A 222 LVG 224 (321)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 84
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=34.31 E-value=62 Score=26.97 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=43.1
Q ss_pred CEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCCCcccEEEee
Q 029161 46 MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDD 110 (198)
Q Consensus 46 ~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~iD~af~G 110 (198)
.++.||+|-+...++..|.+. | ..++|+.-+..-+..+.+.+++...+.+....|+.|-.
T Consensus 120 ~vlvlGaGGaaraia~~L~~~---G--~~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVIna 179 (269)
T 3phh_A 120 NALILGAGGSAKALACELKKQ---G--LQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINA 179 (269)
T ss_dssp EEEEECCSHHHHHHHHHHHHT---T--CEEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHC---C--CEEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEc
Confidence 467889999999999999864 2 47999877776666555666666555554467776643
No 85
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=33.56 E-value=2.1e+02 Score=23.98 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=39.7
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEE-EcCC------------C--Ccc
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLD-QYRD------------T--SQI 104 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~-~l~~------------~--~~i 104 (198)
-+++|++|.+ |+|..=..+++..... | ...+.+++.+-.-...+++.|...+ .... . ..+
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~---G-a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~ 254 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLA---G-ATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGV 254 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---T-CSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---C-CCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCC
Confidence 4688987766 6665444444444332 2 1246666677666667778887633 2111 0 158
Q ss_pred cEEEeecC
Q 029161 105 DFAFDDAD 112 (198)
Q Consensus 105 D~af~Gad 112 (198)
|++|+.+.
T Consensus 255 Dvvid~~G 262 (370)
T 4ej6_A 255 DVVIECAG 262 (370)
T ss_dssp EEEEECSC
T ss_pred CEEEECCC
Confidence 99998664
No 86
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=33.46 E-value=1.6e+02 Score=22.51 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=36.1
Q ss_pred EEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH-HcCCCEEE
Q 029161 47 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIPLDQ 97 (198)
Q Consensus 47 ~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~-~~gi~v~~ 97 (198)
++.+|.|..-..+++.|.+.. .+++++..+......+. ..+.+++.
T Consensus 3 iiIiG~G~~G~~la~~L~~~g-----~~v~vid~~~~~~~~l~~~~~~~~i~ 49 (218)
T 3l4b_C 3 VIIIGGETTAYYLARSMLSRK-----YGVVIINKDRELCEEFAKKLKATIIH 49 (218)
T ss_dssp EEEECCHHHHHHHHHHHHHTT-----CCEEEEESCHHHHHHHHHHSSSEEEE
T ss_pred EEEECCCHHHHHHHHHHHhCC-----CeEEEEECCHHHHHHHHHHcCCeEEE
Confidence 678899999999999997641 37999999998877664 45666554
No 87
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=33.28 E-value=98 Score=27.07 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=28.6
Q ss_pred ccCCCCC-EEEE----CcchhHH--HHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH-HcCCC
Q 029161 40 TYITSGM-VVGL----GSGQASA--MAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIP 94 (198)
Q Consensus 40 ~~I~~g~-~IgL----gsGST~~--~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~-~~gi~ 94 (198)
..++.++ .+.| |||-|+. .++..|... + ...+.++|.+-..+..+. ..+..
T Consensus 39 ~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~---~-~~~il~~a~T~~Aa~~l~~~~~~~ 97 (459)
T 3upu_A 39 KAIKEKKHHVTINGPAGTGATTLTKFIIEALIST---G-ETGIILAAPTHAAKKILSKLSGKE 97 (459)
T ss_dssp HHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT---T-CCCEEEEESSHHHHHHHHHHHSSC
T ss_pred HHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---C-CceEEEecCcHHHHHHHHhhhccc
Confidence 4444444 4444 8886653 334444332 2 136888888888888774 34444
No 88
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=32.80 E-value=90 Score=26.23 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhh-cCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLR-AGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~-~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+...-.|..|+|+ ++...++ +.++.+ .|. ..+-++|...
T Consensus 63 ~Ls~~Er~~v~~~~~------~~~~gr~pviaGvg~~~t~~ai~-la~~A~~~Ga-davlv~~P~y 120 (307)
T 3s5o_A 63 FLTSSERLEVVSRVR------QAMPKNRLLLAGSGCESTQATVE-MTVSMAQVGA-DAAMVVTPCY 120 (307)
T ss_dssp GSCHHHHHHHHHHHH------HTSCTTSEEEEECCCSSHHHHHH-HHHHHHHTTC-SEEEEECCCT
T ss_pred hCCHHHHHHHHHHHH------HHcCCCCcEEEecCCCCHHHHHH-HHHHHHHcCC-CEEEEcCCCc
Confidence 445779999999999 888766677788885 3444443 333322 232 4677777654
No 89
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=31.97 E-value=1.6e+02 Score=24.24 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=40.1
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE-cCCC-----------CcccEE
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ-YRDT-----------SQIDFA 107 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~-l~~~-----------~~iD~a 107 (198)
.+++|++|.+ |+|..=...++.+... |. ..+.++..|-.-...+++.|...+. .... ..+|++
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~---g~-~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v 243 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAV---SA-ARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAV 243 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHH---CC-CEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CC-CEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEE
Confidence 5789997766 6665444444443322 11 2577776777777778888876432 2110 157888
Q ss_pred EeecC
Q 029161 108 FDDAD 112 (198)
Q Consensus 108 f~Gad 112 (198)
|+.+.
T Consensus 244 ~d~~G 248 (345)
T 3jv7_A 244 FDFVG 248 (345)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 87553
No 90
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=31.91 E-value=61 Score=25.65 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLD 96 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~ 96 (198)
+-|.|.+-|++|+..+.+.+.- +.+++++.=+-.++..+.+.|+++.
T Consensus 161 ~~d~v~ftS~s~v~~~~~~~~~------~~~~~~~aIG~~Ta~~l~~~G~~v~ 207 (229)
T 3p9z_A 161 EKSILIFTAISHAKAFLHYFEF------LENYTAISIGNTTALYLQEQGIPSY 207 (229)
T ss_dssp TTCEEEECSHHHHHHHHHHSCC------CTTCEEEESSHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECHHHHHHHHHHhCc------ccCCEEEEECHHHHHHHHHcCCCce
Confidence 4589999999999999887741 2478899999999999999998754
No 91
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=31.64 E-value=1.4e+02 Score=21.42 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=33.9
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCc-HHHHHHHH---HcCCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS-VASANEAA---VAGIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS-~~~a~~l~---~~gi~v~~ 97 (198)
.+.++.+|.|..-..+++.|.+. | .++++|..+ -..+..+. ..|++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~---g--~~V~vid~~~~~~~~~~~~~~~~~~~~i~ 55 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQR---G--QNVTVISNLPEDDIKQLEQRLGDNADVIP 55 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT---T--CCEEEEECCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHC---C--CCEEEEECCChHHHHHHHHhhcCCCeEEE
Confidence 45688899999999999999764 1 379999886 44333332 33566553
No 92
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=30.55 E-value=2.3e+02 Score=23.41 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=40.1
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEE-EcC------------CCCcccE
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLD-QYR------------DTSQIDF 106 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~-~l~------------~~~~iD~ 106 (198)
-+++|++|.+ |+|..=..+++..... | ...+.++..+-.-...+++.|...+ ... .-..+|+
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~---G-a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~ 238 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHL---G-AGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDK 238 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTT---T-CSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---C-CcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCE
Confidence 4678886655 7765555555444332 2 1257777776666667778886533 211 1125899
Q ss_pred EEeecCc
Q 029161 107 AFDDADI 113 (198)
Q Consensus 107 af~Gad~ 113 (198)
+|+.+.+
T Consensus 239 v~d~~g~ 245 (352)
T 3fpc_A 239 VVIAGGD 245 (352)
T ss_dssp EEECSSC
T ss_pred EEECCCC
Confidence 9986543
No 93
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=30.29 E-value=2.2e+02 Score=23.02 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhh---------cC----------CCCCeEEEcCc-
Q 029161 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLR---------AG----------ALKDVIGIPTS- 81 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~---------~~----------~l~~itvVTnS- 81 (198)
.-+|...|..++ ..+++|+++++||-......++..+.+.. .| ..+++.+|++-
T Consensus 52 T~~~L~~A~~~i------~~i~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~ 125 (208)
T 1vi6_A 52 LDERIRVAAKFL------SRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPA 125 (208)
T ss_dssp HHHHHHHHHHHH------TTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTT
T ss_pred HHHHHHHHHHHH------HhcCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCC
Confidence 346666666666 44489999999999887777666654421 11 13577888763
Q ss_pred --HHHHHHHHHcCCCEEEcCCC----CcccEEEeecC
Q 029161 82 --VASANEAAVAGIPLDQYRDT----SQIDFAFDDAD 112 (198)
Q Consensus 82 --~~~a~~l~~~gi~v~~l~~~----~~iD~af~Gad 112 (198)
.+...++...|||++.+-+. ..+|..+=+-|
T Consensus 126 ~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Nd 162 (208)
T 1vi6_A 126 IDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNN 162 (208)
T ss_dssp TTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCC
T ss_pred cchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCC
Confidence 23445788899998876432 25777776653
No 94
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=30.28 E-value=52 Score=25.99 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=40.9
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCC
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~ 100 (198)
-|.|.+-|++|+..|.+.+.+... ..++++.++.=|-.++..+.+.|++.+...+
T Consensus 173 ~d~v~ftS~s~v~~~~~~~~~~~~-~~l~~~~~~aiG~~ta~~l~~~G~~~~~va~ 227 (240)
T 3mw8_A 173 IDTIVVTSGEVLENLINLVPKDSF-AWLRDCHIIVPSARVETQARKKGLRRVTNAG 227 (240)
T ss_dssp CCEEECCSHHHHHHHHHHSCGGGH-HHHHHSEEEESSHHHHHHHHHTTCCCEEECS
T ss_pred CCEEEEcCHHHHHHHHHHcchHHH-HHHhCCCEEEECHHHHHHHHHcCCCceEeCC
Confidence 479999999999999988754210 0012578899999999999999987654433
No 95
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=29.65 E-value=2.6e+02 Score=23.73 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=39.9
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEE-cCC------------CCcccE
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ-YRD------------TSQIDF 106 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~-l~~------------~~~iD~ 106 (198)
-+++|++|.+ |+|..=..+++..... | ...+.++..|-.-...+++.|...+. ... -..+|+
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~---G-a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~ 285 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA---G-ASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKL 285 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT---T-CSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---C-CCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCE
Confidence 4789997766 7665444444444322 1 12466666676666677788866432 211 125899
Q ss_pred EEeecCc
Q 029161 107 AFDDADI 113 (198)
Q Consensus 107 af~Gad~ 113 (198)
+|+.+.+
T Consensus 286 vid~~g~ 292 (404)
T 3ip1_A 286 FLEATGV 292 (404)
T ss_dssp EEECSSC
T ss_pred EEECCCC
Confidence 9987644
No 96
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=29.58 E-value=1.9e+02 Score=23.71 Aligned_cols=69 Identities=19% Similarity=0.105 Sum_probs=41.9
Q ss_pred ccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCE-EEcCC------------CCccc
Q 029161 40 TYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPL-DQYRD------------TSQID 105 (198)
Q Consensus 40 ~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v-~~l~~------------~~~iD 105 (198)
..+++|++|.+ |+|..-...++.+... | ...+++++.|-.-...+++.|... +...+ ...+|
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~---G-~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVAL---G-AKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHT---T-CSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHc---C-CcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 45678887666 7777666666655443 1 124566777766667778888653 33221 12478
Q ss_pred EEEeecC
Q 029161 106 FAFDDAD 112 (198)
Q Consensus 106 ~af~Gad 112 (198)
.+|+.+.
T Consensus 232 ~v~d~~G 238 (346)
T 4a2c_A 232 LILETAG 238 (346)
T ss_dssp EEEECSC
T ss_pred ccccccc
Confidence 8888653
No 97
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=29.52 E-value=30 Score=28.22 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHHHHHHhccccccccCCCCCE-EEE--CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH
Q 029161 26 FRAAKHTVTFLIVDTYITSGMV-VGL--GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89 (198)
Q Consensus 26 ~~IA~~Aa~~~~~~~~I~~g~~-IgL--gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~ 89 (198)
+.|+.-|. .++++|.. +=| |+|..+..+++.+... . -.++.|-.|-.....++
T Consensus 58 ~~i~~l~~------~~~~~~~~vLDlGcGtG~~~~~la~~~~~~----~-~~v~gvD~s~~ml~~A~ 113 (261)
T 4gek_A 58 SMIGMLAE------RFVQPGTQVYDLGCSLGAATLSVRRNIHHD----N-CKIIAIDNSPAMIERCR 113 (261)
T ss_dssp HHHHHHHH------HHCCTTCEEEEETCTTTHHHHHHHHTCCSS----S-CEEEEEESCHHHHHHHH
T ss_pred HHHHHHHH------HhCCCCCEEEEEeCCCCHHHHHHHHhcCCC----C-CEEEEEECCHHHHHHHH
Confidence 44566666 88999974 344 5556666666555321 1 15888888877655553
No 98
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=28.85 E-value=1.1e+02 Score=25.53 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=32.8
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+.. |..|+|+ ++...++ +.++.+.-.-..+-++|...
T Consensus 48 ~Ls~eEr~~v~~~~~------~~~~g---viaGvg~~~t~~ai~-la~~A~~~Gadavlv~~P~y 102 (293)
T 1w3i_A 48 SLSPEEKLENLKAVY------DVTNK---IIFQVGGLNLDDAIR-LAKLSKDFDIVGIASYAPYY 102 (293)
T ss_dssp GSCHHHHHHHHHHHH------TTCSC---EEEECCCSCHHHHHH-HHHHGGGSCCSEEEEECCCS
T ss_pred hCCHHHHHHHHHHHH------HHcCC---EEEecCCCCHHHHHH-HHHHHHhcCCCEEEEcCCCC
Confidence 345779999999999 77764 6677776 3344444 33332321223577777653
No 99
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=28.26 E-value=2e+02 Score=23.98 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=39.6
Q ss_pred ccCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCE-EEcCC------------CCccc
Q 029161 40 TYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPL-DQYRD------------TSQID 105 (198)
Q Consensus 40 ~~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v-~~l~~------------~~~iD 105 (198)
.-+++|++|.+ |+|..=..+++.+... | -++.++..+-.-...+++.|... +.-.. ...+|
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~---G--a~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D 259 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKAT---G--AEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGAD 259 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHT---T--CEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---C--CEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCce
Confidence 44678987666 7665555555544432 2 14666666666566677788653 33110 01588
Q ss_pred EEEeecC
Q 029161 106 FAFDDAD 112 (198)
Q Consensus 106 ~af~Gad 112 (198)
++|+.+.
T Consensus 260 ~vid~~g 266 (363)
T 3uog_A 260 HILEIAG 266 (363)
T ss_dssp EEEEETT
T ss_pred EEEECCC
Confidence 8888664
No 100
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=28.20 E-value=1.5e+02 Score=20.36 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=33.3
Q ss_pred EEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH-HcCCCEE
Q 029161 47 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIPLD 96 (198)
Q Consensus 47 ~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~-~~gi~v~ 96 (198)
++.+|.|..-..+++.|.+. | .+++++..+-.....+. ..+++.+
T Consensus 7 i~IiG~G~iG~~~a~~L~~~---g--~~v~~~d~~~~~~~~~~~~~~~~~~ 52 (140)
T 1lss_A 7 IIIAGIGRVGYTLAKSLSEK---G--HDIVLIDIDKDICKKASAEIDALVI 52 (140)
T ss_dssp EEEECCSHHHHHHHHHHHHT---T--CEEEEEESCHHHHHHHHHHCSSEEE
T ss_pred EEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHHhcCcEEE
Confidence 56779999999999999764 1 36999988877766565 3466544
No 101
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=28.13 E-value=22 Score=28.99 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.5
Q ss_pred CCCEEEECcchhHHHHHHHHHH
Q 029161 44 SGMVVGLGSGQASAMAIEYMGR 65 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~ 65 (198)
+..+|+|.+|||...+.+.|.+
T Consensus 45 ~~~~l~LsgGsTp~~ly~~L~~ 66 (232)
T 1vl1_A 45 DKIFVVLAGGRTPLPVYEKLAE 66 (232)
T ss_dssp SCEEEEECCSTTHHHHHHHHTT
T ss_pred CCeEEEEcCCccHHHHHHHHHH
Confidence 3579999999999999999975
No 102
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=28.09 E-value=59 Score=23.68 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=33.2
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH-HcCCCEE
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIPLD 96 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~-~~gi~v~ 96 (198)
..++.+|.|..-..+++.|... | .+++++..+-.....+. ..|..++
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~---g--~~V~vid~~~~~~~~~~~~~g~~~~ 67 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSS---G--HSVVVVDKNEYAFHRLNSEFSGFTV 67 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT---T--CEEEEEESCGGGGGGSCTTCCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHhcCCCcEE
Confidence 3467789999999999999764 2 26889887766555444 4555544
No 103
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=28.02 E-value=2.6e+02 Score=23.23 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=40.1
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCC-EEEcCC-----------CCcccEE
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIP-LDQYRD-----------TSQIDFA 107 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~-v~~l~~-----------~~~iD~a 107 (198)
.+++|++|.+ |+|..=..+++ ++... .| . .+.++..|-.-...+++.|.. ++...+ -..+|++
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avq-lak~~-~G-a-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvv 258 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQ-LLKVM-TP-A-TVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 258 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHH-HHHHH-CC-C-EEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHH-HHHHc-CC-C-eEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcEE
Confidence 4788997776 77644444444 44321 02 1 466666666666667788865 333221 1158999
Q ss_pred EeecCc
Q 029161 108 FDDADI 113 (198)
Q Consensus 108 f~Gad~ 113 (198)
|+.+.+
T Consensus 259 id~~G~ 264 (359)
T 1h2b_A 259 MDFVGS 264 (359)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 997653
No 104
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=27.63 E-value=1.5e+02 Score=24.55 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=39.7
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCCC----CcccEEEeecCc
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT----SQIDFAFDDADI 113 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~----~~iD~af~Gad~ 113 (198)
-+++|++|.+ |+|..=..+++..... | . .+.+++.|-.-...+++.|...+. .+. ..+|++|+.+.+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~---G-a-~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM---G-A-EVSVFARNEHKKQDALSMGVKHFY-TDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT---T-C-EEEEECSSSTTHHHHHHTTCSEEE-SSGGGCCSCEEEEEECCCS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---C-C-eEEEEeCCHHHHHHHHhcCCCeec-CCHHHHhcCCCEEEECCCc
Confidence 4678997766 7665444444444332 2 1 466666666656677788876443 211 158999986543
No 105
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=27.51 E-value=2.7e+02 Score=23.21 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhccccccccC-CCCCEEEECcchhHHHHHHHHHHHhh---------cC----------CCCCeEEEcCc
Q 029161 22 SSVLFRAAKHTVTFLIVDTYI-TSGMVVGLGSGQASAMAIEYMGRQLR---------AG----------ALKDVIGIPTS 81 (198)
Q Consensus 22 ~~~K~~IA~~Aa~~~~~~~~I-~~g~~IgLgsGST~~~la~~L~~~~~---------~~----------~l~~itvVTnS 81 (198)
.-+|...|..++ ..+ ++|+++++||-.+....+...+.+.. .| .++++.||++-
T Consensus 53 T~~~L~~A~~~i------~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp 126 (252)
T 3u5c_A 53 TWEKLVLAARII------AAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDP 126 (252)
T ss_dssp HHHHHHHHHHHH------TTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCT
T ss_pred HHHHHHHHHHHH------HHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCC
Confidence 345666666666 344 67899999999888877776665411 11 13577888774
Q ss_pred H---HHHHHHHHcCCCEEEcCCC----CcccEEEeec
Q 029161 82 V---ASANEAAVAGIPLDQYRDT----SQIDFAFDDA 111 (198)
Q Consensus 82 ~---~~a~~l~~~gi~v~~l~~~----~~iD~af~Ga 111 (198)
. +...++...|||++.+-+. ..+|..+=+-
T Consensus 127 ~~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~N 163 (252)
T 3u5c_A 127 RSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCN 163 (252)
T ss_dssp TTTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEECC
T ss_pred ccchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeCC
Confidence 3 3344777889998876432 2477777664
No 106
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=27.11 E-value=99 Score=25.67 Aligned_cols=54 Identities=6% Similarity=-0.114 Sum_probs=32.2
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+.. |..|.|+ ++...++......+.|. ..+-++|...
T Consensus 48 ~Ls~eEr~~v~~~~~------~~~~g---ViaGvg~~~t~~ai~la~~A~~~Ga-davlv~~P~y 102 (288)
T 2nuw_A 48 ALSKDEKRQNLNALY------DVTHK---LIFQVGSLNLNDVMELVKFSNEMDI-LGVSSHSPYY 102 (288)
T ss_dssp GSCHHHHHHHHHHHT------TTCSC---EEEECCCSCHHHHHHHHHHHHTSCC-SEEEECCCCS
T ss_pred hCCHHHHHHHHHHHH------HHhCC---eEEeeCCCCHHHHHHHHHHHHhcCC-CEEEEcCCcC
Confidence 345779999999999 77765 6677776 33444433332212232 3566766543
No 107
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=26.76 E-value=63 Score=25.39 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=34.6
Q ss_pred CCCCC-EEE----ECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCC
Q 029161 42 ITSGM-VVG----LGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100 (198)
Q Consensus 42 I~~g~-~Ig----LgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~ 100 (198)
+.+|. ++. +.||+|...+++.|.+... ....-++++.-+......+...|+++..+-.
T Consensus 108 ~~~gk~VliVDDvitTG~Tl~~a~~~L~~~Ga-~~v~~~~l~~~~~~~~~~l~~~g~~v~sl~~ 170 (205)
T 2wns_A 108 INPGETCLIIEDVVTSGSSVLETVEVLQKEGL-KVTDAIVLLDREQGGKDKLQAHGIRLHSVCT 170 (205)
T ss_dssp CCTTCBEEEEEEEESSSHHHHHHHHHHHHTTC-BCCEEEEEEECCSSHHHHHHTTTCEEEEEEE
T ss_pred CCCCCEEEEEEEeccccHHHHHHHHHHHHCCC-EEEEEEEEEEcCcchHHHHHHcCCeEEEEEE
Confidence 33564 444 4799999999999976411 1111233444433444566778888877643
No 108
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=26.11 E-value=91 Score=26.07 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=35.5
Q ss_pred ccCHHHHHHHHHHHhccccccccCCC-CCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITS-GMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~-g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+-..+||+++.+.++ +.+.. .--|..|+|+ ++...++......+.|. ..+-++|..
T Consensus 56 ~Ls~~Er~~v~~~~~------~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga-davlv~~P~ 113 (301)
T 3m5v_A 56 TLTHEEHRTCIEIAV------ETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA-DGILSVAPY 113 (301)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC-SEEEEECCC
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEEcCCC
Confidence 345779999999999 77776 5678888886 34444443332222232 467777754
No 109
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=26.00 E-value=32 Score=27.34 Aligned_cols=29 Identities=24% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCCE--EEECcchhHHHHHHHHHHHhhcCCCCCeEEEc
Q 029161 44 SGMV--VGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 79 (198)
Q Consensus 44 ~g~~--IgLgsGST~~~la~~L~~~~~~~~l~~itvVT 79 (198)
+|++ +|||.|.|-.++-+.+++| +|.|+-
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R-------~I~vfD 71 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGR-------EIYVFE 71 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSS-------CEEEEE
T ss_pred CCceEEecCCCChhHHHHHHhCCCC-------cEEEEE
Confidence 6877 7889999999998888874 677754
No 110
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=25.97 E-value=73 Score=26.61 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+-..+||+++.+.++ +.+...--|..|+|+ ++...++......+.|. ..+-++|..
T Consensus 56 ~Ls~~Er~~v~~~~~------~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga-davlv~~P~ 112 (297)
T 3flu_A 56 TLSVEEHTAVIEAVV------KHVAKRVPVIAGTGANNTVEAIALSQAAEKAGA-DYTLSVVPY 112 (297)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC-SEEEEECCC
T ss_pred cCCHHHHHHHHHHHH------HHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCC-CEEEECCCC
Confidence 345779999999998 777655567778885 34444433332222232 467777754
No 111
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=25.80 E-value=1.1e+02 Score=27.52 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=40.7
Q ss_pred CCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHc-CCCEEE
Q 029161 44 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA-GIPLDQ 97 (198)
Q Consensus 44 ~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~-gi~v~~ 97 (198)
.+.+|.+|.|.....+++.|.+.. .++++|.++.+....+... +++++.
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~-----~~vvvid~~~~~~~~~~~~~~~~~i~ 176 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRN-----HLFVVVTDNYDQALHLEEQEGFKVVY 176 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTT-----CCEEEEESCHHHHHHHHHSCSSEEEE
T ss_pred CCeEEEECCChHHHHHHHHHHHCC-----CCEEEEECCHHHHHHHHHhcCCeEEE
Confidence 567999999999999999997541 3799999999988888777 877664
No 112
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=25.68 E-value=2.8e+02 Score=22.84 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccccccccC-CCCCEEEECcchhHHHHHHHHHHHhh----------cC----------CCCCeEEEcCc
Q 029161 23 SVLFRAAKHTVTFLIVDTYI-TSGMVVGLGSGQASAMAIEYMGRQLR----------AG----------ALKDVIGIPTS 81 (198)
Q Consensus 23 ~~K~~IA~~Aa~~~~~~~~I-~~g~~IgLgsGST~~~la~~L~~~~~----------~~----------~l~~itvVTnS 81 (198)
-+|...|..++ ..+ ++|+++++|+-......++..+.+.. .| .++++.+|++-
T Consensus 50 ~~~L~~A~~~i------~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp 123 (241)
T 2xzm_B 50 WQKIKLAARVI------AAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDP 123 (241)
T ss_dssp HHHHHHHHHHH------HHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCT
T ss_pred HHHHHHHHHHH------HHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECC
Confidence 35555565555 335 47899999999887666665544311 01 13567888863
Q ss_pred ---HHHHHHHHHcCCCEEEcCCC----CcccEEEeec
Q 029161 82 ---VASANEAAVAGIPLDQYRDT----SQIDFAFDDA 111 (198)
Q Consensus 82 ---~~~a~~l~~~gi~v~~l~~~----~~iD~af~Ga 111 (198)
.....++...|||++.+-+. ..+|..+=|-
T Consensus 124 ~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~N 160 (241)
T 2xzm_B 124 RSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCN 160 (241)
T ss_dssp TTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSC
T ss_pred CcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCC
Confidence 33444777889999987543 1466666554
No 113
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=24.90 E-value=94 Score=26.14 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=42.6
Q ss_pred HHHHHHHhccccccccCCCC-CEEEECcchh---------------HHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHH
Q 029161 26 FRAAKHTVTFLIVDTYITSG-MVVGLGSGQA---------------SAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA 89 (198)
Q Consensus 26 ~~IA~~Aa~~~~~~~~I~~g-~~IgLgsGST---------------~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~ 89 (198)
..+-++|. +++++| |+|=||.-|| +..+++.|.+.. . -.|.|=|....++..+.
T Consensus 38 ~~a~~~a~------~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~---~-~piSIDT~~~~va~aAl 107 (282)
T 1aj0_A 38 IDAVKHAN------LMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF---E-VWISVDTSKPEVIRESA 107 (282)
T ss_dssp HHHHHHHH------HHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC---C-CEEEEECCCHHHHHHHH
T ss_pred HHHHHHHH------HHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc---C-CeEEEeCCCHHHHHHHH
Confidence 33455577 888888 7999988666 333444443321 1 25899999999999887
Q ss_pred HcCCCEEE
Q 029161 90 VAGIPLDQ 97 (198)
Q Consensus 90 ~~gi~v~~ 97 (198)
+.|.+++.
T Consensus 108 ~aGa~iIN 115 (282)
T 1aj0_A 108 KVGAHIIN 115 (282)
T ss_dssp HTTCCEEE
T ss_pred HcCCCEEE
Confidence 78887764
No 114
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=24.47 E-value=88 Score=26.45 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=35.0
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
.+-..+||+++.+.++ +.+...--|..|+|+ ++...++......+.|. ..+-++|..
T Consensus 71 ~~Ls~~Er~~v~~~~v------~~~~grvpViaGvg~~st~eai~la~~A~~~Ga-davlv~~P~ 128 (314)
T 3qze_A 71 ATLDVEEHIQVIRRVV------DQVKGRIPVIAGTGANSTREAVALTEAAKSGGA-DACLLVTPY 128 (314)
T ss_dssp GGCCHHHHHHHHHHHH------HHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC-SEEEEECCC
T ss_pred hhCCHHHHHHHHHHHH------HHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCC-CEEEEcCCC
Confidence 3455789999999998 777655556778886 34444443332222232 467777753
No 115
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=24.39 E-value=2.1 Score=28.17 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCCeEEEcCcHHH
Q 029161 53 GQASAMAIEYMGRQLRAGALKDVIGIPTSVAS 84 (198)
Q Consensus 53 GST~~~la~~L~~~~~~~~l~~itvVTnS~~~ 84 (198)
|||..|+++.|.++ +.++..||...+
T Consensus 1 ~s~~eYL~qLlkdk------k~l~~~Pn~~~i 26 (56)
T 4dnn_A 1 GSTPDYLMQLMNDK------KLMSSLPNFSGI 26 (56)
T ss_dssp CCCHHHHHHHHHHH------HHHHHCHHHHTT
T ss_pred CChHHHHHHHHHHH------HHHHhCCCchhH
Confidence 78999999999987 356677775553
No 116
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=24.37 E-value=1.5e+02 Score=23.53 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=31.9
Q ss_pred EEEE--CcchhHHHHHHHHHHHhhcCCC--CCeEEEcCc--HHHHHHHHHcCCCEEEc
Q 029161 47 VVGL--GSGQASAMAIEYMGRQLRAGAL--KDVIGIPTS--VASANEAAVAGIPLDQY 98 (198)
Q Consensus 47 ~IgL--gsGST~~~la~~L~~~~~~~~l--~~itvVTnS--~~~a~~l~~~gi~v~~l 98 (198)
++++ |+|+....+++.|.+. .+ .=+-||||. ......+.++|+++..+
T Consensus 4 I~vl~SG~g~~~~~~l~~l~~~----~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~ 57 (216)
T 2ywr_A 4 IGVLVSGRGSNLQAIIDAIESG----KVNASIELVISDNPKAYAIERCKKHNVECKVI 57 (216)
T ss_dssp EEEEECSCCHHHHHHHHHHHTT----SSCEEEEEEEESCTTCHHHHHHHHHTCCEEEC
T ss_pred EEEEEeCCcHHHHHHHHHHHhC----CCCCeEEEEEeCCCChHHHHHHHHcCCCEEEe
Confidence 5667 8888888888887642 12 124678885 33445678899998854
No 117
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=24.35 E-value=89 Score=24.48 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=32.6
Q ss_pred ECcchhHHHHHHHHHHHhhcCCCCC---eEEEcC-cHHHHHHHHHcCCCEEEcCCC
Q 029161 50 LGSGQASAMAIEYMGRQLRAGALKD---VIGIPT-SVASANEAAVAGIPLDQYRDT 101 (198)
Q Consensus 50 LgsGST~~~la~~L~~~~~~~~l~~---itvVTn-S~~~a~~l~~~gi~v~~l~~~ 101 (198)
++||.|...+++.|.+. |. +. +++++- +......+.+.|++++.+...
T Consensus 127 itTG~Tl~~a~~~L~~~---Ga-~~v~v~~l~~~~~~~~~~~l~~~~~~~~~l~~~ 178 (211)
T 2aee_A 127 ISTGGSVLDAAAAASRE---GA-DVLGVVAIFTYELPKASQNFKEAGIKLITLSNY 178 (211)
T ss_dssp ESSCHHHHHHHHHHHHT---TC-EEEEEEEEEECCCHHHHHHHHHHTCCEEESCCH
T ss_pred ccchHHHHHHHHHHHHC---CC-cEEEEEEEEecccccHHHHHHhCCCCEEEEeeH
Confidence 58999999999999764 21 12 333443 455566677788988877553
No 118
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=24.27 E-value=92 Score=25.79 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=32.0
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+.. |..|+|+ ++...++......+.|. ..+-++|...
T Consensus 47 ~Ls~~Er~~v~~~~~------~~~~g---vi~Gvg~~~t~~ai~la~~A~~~Ga-davlv~~P~y 101 (286)
T 2r91_A 47 ALSLQEKMELTDAAT------SAARR---VIVQVASLNADEAIALAKYAESRGA-EAVASLPPYY 101 (286)
T ss_dssp GSCHHHHHHHHHHHH------HHCSS---EEEECCCSSHHHHHHHHHHHHHTTC-SEEEECCSCS
T ss_pred hCCHHHHHHHHHHHH------HHhCC---EEEeeCCCCHHHHHHHHHHHHhcCC-CEEEEcCCcC
Confidence 345779999999998 77664 6677776 33444433332212232 3576766653
No 119
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.09 E-value=1e+02 Score=25.66 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+...--|..|+|+ ++.+.++......+.|. ..+-++|...
T Consensus 49 ~Ls~~Er~~v~~~~~------~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga-davlv~~P~y 106 (294)
T 2ehh_A 49 TLTFEEHEKVIEFAV------KRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGA-DGALVVVPYY 106 (294)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTC-SEEEEECCCS
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC-CEEEECCCCC
Confidence 345679999999888 777655667788886 33444443332222232 3677777653
No 120
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=23.90 E-value=2.1e+02 Score=23.40 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=33.5
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCE
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPL 95 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v 95 (198)
-+++|++|.+ |+|+....++..++.. +. .++.++..|-.-...+.+.|...
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~---~g-~~Vi~~~~~~~r~~~~~~~Ga~~ 211 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNV---FG-AKVIAVDINQDKLNLAKKIGADV 211 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---SC-CEEEEEESCHHHHHHHHHTTCSE
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHh---CC-CEEEEEECcHHHhhhhhhcCCeE
Confidence 4688986655 8888888777777643 11 24666666666566667778653
No 121
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=23.87 E-value=55 Score=26.57 Aligned_cols=53 Identities=19% Similarity=0.001 Sum_probs=41.0
Q ss_pred CCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcC
Q 029161 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYR 99 (198)
Q Consensus 45 g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~ 99 (198)
-|.|.+-|++|+..|.+.+.+... .+.++.++.=+-.++..+.+.|++.+...
T Consensus 194 ~d~v~ftS~s~v~~~~~~~~~~~~--~l~~~~~~aIG~~Ta~~l~~~G~~~~~va 246 (269)
T 3re1_A 194 LNGLVVSSGQGFEHLLQLAGDSWP--DLAGLPLFVPSPRVASLAQAAGARNVIDC 246 (269)
T ss_dssp CCEEECSSHHHHTTTHHHHGGGHH--HHTTSCEEESSHHHHHHHHHHTCSSEEEC
T ss_pred CCEEEEcCHHHHHHHHHHhhHHHH--HHhCCeEEEECHHHHHHHHHCCCCceEEC
Confidence 489999999999999998864210 12467889999999999999998765433
No 122
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=23.86 E-value=1.2e+02 Score=24.17 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=31.1
Q ss_pred EEECcchhHHHHHHHHHHHhhcCCC-CC-eEEEcCc--HHHHHHHHHcCCCEEEc
Q 029161 48 VGLGSGQASAMAIEYMGRQLRAGAL-KD-VIGIPTS--VASANEAAVAGIPLDQY 98 (198)
Q Consensus 48 IgLgsGST~~~la~~L~~~~~~~~l-~~-itvVTnS--~~~a~~l~~~gi~v~~l 98 (198)
++.|+|+....+++.|.+. .+ -+ .-||||. ..+...+.++|+++..+
T Consensus 9 l~sG~g~~~~~~l~~l~~~----~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~ 59 (212)
T 3av3_A 9 FASGSGTNFQAIVDAAKRG----DLPARVALLVCDRPGAKVIERAARENVPAFVF 59 (212)
T ss_dssp ECCSSCHHHHHHHHHHHTT----CCCEEEEEEEESSTTCHHHHHHHHTTCCEEEC
T ss_pred EEECCcHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEe
Confidence 4558888888888887642 11 12 3577773 34556678899998754
No 123
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.85 E-value=83 Score=26.45 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=34.7
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhh-cCCCCCeEEEcCc
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLR-AGALKDVIGIPTS 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~-~~~l~~itvVTnS 81 (198)
+-..+||+++.+.++ +.+...--|..|.|++...=+-++.++.+ .|. ..+-++|..
T Consensus 64 ~Lt~~Er~~v~~~~~------~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga-davlv~~P~ 120 (304)
T 3l21_A 64 TTTDGEKIELLRAVL------EAVGDRARVIAGAGTYDTAHSIRLAKACAAEGA-HGLLVVTPY 120 (304)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTC-SEEEEECCC
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEECCCC
Confidence 345789999999999 77776667777777433332333333322 233 467777755
No 124
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=23.61 E-value=1.8e+02 Score=24.61 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHHHHHhccccccccCCCC-CEEEECcchh---------HHHHH------HHHHHHhhcCCCCCeEEEcCcHHHHHHH
Q 029161 25 LFRAAKHTVTFLIVDTYITSG-MVVGLGSGQA---------SAMAI------EYMGRQLRAGALKDVIGIPTSVASANEA 88 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g-~~IgLgsGST---------~~~la------~~L~~~~~~~~l~~itvVTnS~~~a~~l 88 (198)
...+.+.|. +++++| |+|=||.-|| -.++. +.|.+.. .. .|.|=|....++..+
T Consensus 62 ~~~a~~~a~------~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~---~v-piSIDT~~~~V~~aA 131 (297)
T 1tx2_A 62 VDAAVRHAK------EMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV---KL-PISIDTYKAEVAKQA 131 (297)
T ss_dssp HHHHHHHHH------HHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS---CS-CEEEECSCHHHHHHH
T ss_pred HHHHHHHHH------HHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC---Cc-eEEEeCCCHHHHHHH
Confidence 344555677 888888 7899987665 33333 3333211 22 599999999999988
Q ss_pred HHcCCCEEE
Q 029161 89 AVAGIPLDQ 97 (198)
Q Consensus 89 ~~~gi~v~~ 97 (198)
.+.|..++.
T Consensus 132 l~aGa~iIN 140 (297)
T 1tx2_A 132 IEAGAHIIN 140 (297)
T ss_dssp HHHTCCEEE
T ss_pred HHcCCCEEE
Confidence 777877663
No 125
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=23.45 E-value=94 Score=25.84 Aligned_cols=58 Identities=7% Similarity=-0.078 Sum_probs=35.8
Q ss_pred hccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 18 LSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 18 ~~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
.+-..+||+++.+.++ +.+...--|..|+|+ ++...++......+.|. ..+-++|...
T Consensus 52 ~~Ls~~Er~~v~~~~~------~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga-davlv~~P~y 110 (293)
T 1f6k_A 52 FMLSTEEKKEIFRIAK------DEAKDQIALIAQVGSVNLKEAVELGKYATELGY-DCLSAVTPFY 110 (293)
T ss_dssp GGSCHHHHHHHHHHHH------HHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC-SEEEEECCCS
T ss_pred hhCCHHHHHHHHHHHH------HHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC-CEEEECCCCC
Confidence 3456789999999988 777665667788886 33444333322212232 3677777653
No 126
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=22.71 E-value=93 Score=25.82 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=34.8
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+...--|..|+|+ ++...++......+.|. ..+-++|...
T Consensus 49 ~Ls~~Er~~v~~~~~------~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga-davlv~~P~y 106 (289)
T 2yxg_A 49 TLSHEEHKKVIEKVV------DVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGA-DAVLSITPYY 106 (289)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTC-SEEEEECCCS
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCC-CEEEECCCCC
Confidence 345679999999988 777655667788886 33444333332212232 3577777653
No 127
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=22.54 E-value=94 Score=26.06 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=35.2
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+...--|..|+|+ ++...++......+.|. ..+-++|...
T Consensus 60 ~Ls~eEr~~v~~~~~------~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga-davlv~~P~y 117 (303)
T 2wkj_A 60 VQSLSEREQVLEIVA------EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGF-DAVSAVTPFY 117 (303)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTC-SEEEEECCCS
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 345779999999988 777666667778886 33444433332212232 3677777653
No 128
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=22.44 E-value=49 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.5
Q ss_pred cCCCCCEEEECcchhHHHHHHHHHHH
Q 029161 41 YITSGMVVGLGSGQASAMAIEYMGRQ 66 (198)
Q Consensus 41 ~I~~g~~IgLgsGST~~~la~~L~~~ 66 (198)
+.++|+++-+-.|+|+..+|..|...
T Consensus 11 ~tP~G~~~~lp~GaT~~D~A~~Ih~~ 36 (78)
T 3hvz_A 11 FTPKGDVISLPIGSTVIDFAYAIHSA 36 (78)
T ss_dssp ECTTSCEEEEETTCBHHHHHHHHCHH
T ss_pred ECCCCCEEEecCCCCHHHHHHHhhhh
Confidence 45789999999999999999998643
No 129
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=22.31 E-value=1.2e+02 Score=25.45 Aligned_cols=55 Identities=25% Similarity=0.219 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcC
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 80 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTn 80 (198)
+-..+||+++.+.++ +.+...--|..|+|+++...++......+.|. ..+-++|.
T Consensus 61 ~Ls~eEr~~v~~~~v------~~~~grvpViaGvg~~t~~ai~la~~A~~~Ga-davlv~~P 115 (316)
T 3e96_A 61 ALSLEEAKEEVRRTV------EYVHGRALVVAGIGYATSTAIELGNAAKAAGA-DAVMIHMP 115 (316)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSEEEEEECSSHHHHHHHHHHHHHHTC-SEEEECCC
T ss_pred cCCHHHHHHHHHHHH------HHhCCCCcEEEEeCcCHHHHHHHHHHHHhcCC-CEEEEcCC
Confidence 445789999999998 77765556667777666666665543322333 35666654
No 130
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.86 E-value=1.1e+02 Score=25.41 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+...--|..|.|+ ++...++......+.|. ..+-++|...
T Consensus 50 ~Ls~~Er~~v~~~~~------~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Ga-davlv~~P~y 107 (291)
T 3a5f_A 50 TMTETERKETIKFVI------DKVNKRIPVIAGTGSNNTAASIAMSKWAESIGV-DGLLVITPYY 107 (291)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC-SEEEEECCCS
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCC-CEEEEcCCCC
Confidence 456779999999888 666654456677776 33444333332212232 4677777654
No 131
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=21.85 E-value=80 Score=26.26 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=34.5
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+-..+||+++.+.++ +.+...--|..|+|+ ++...++......+.|. ..+-++|..
T Consensus 50 ~Ls~~Er~~v~~~~~------~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga-davlv~~P~ 106 (291)
T 3tak_A 50 TLSMEEHTQVIKEII------RVANKRIPIIAGTGANSTREAIELTKAAKDLGA-DAALLVTPY 106 (291)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTC-SEEEEECCC
T ss_pred cCCHHHHHHHHHHHH------HHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC-CEEEEcCCC
Confidence 345789999999998 777655566778885 34444443332222233 467777754
No 132
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=21.85 E-value=1.1e+02 Score=25.70 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+...--|..|.|+ ++.+.++......+.|. ..+-++|...
T Consensus 65 ~Ls~~Er~~v~~~~~------~~~~grvpviaGvg~~st~~ai~la~~A~~~Ga-davlv~~P~y 122 (304)
T 3cpr_A 65 TTTAAEKLELLKAVR------EEVGDRAKLIAGVGTNNTRTSVELAEAAASAGA-DGLLVVTPYY 122 (304)
T ss_dssp TSCHHHHHHHHHHHH------HHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTC-SEEEEECCCS
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCC-CEEEECCCCC
Confidence 345679999999888 777655667788886 34444443332222232 4677777653
No 133
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=21.74 E-value=1.6e+02 Score=22.70 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=42.4
Q ss_pred EEEECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEcCC-CCcccEEEeecC
Q 029161 47 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD-TSQIDFAFDDAD 112 (198)
Q Consensus 47 ~IgLgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~-~~~iD~af~Gad 112 (198)
+..+|+|..-..+++.|.+. | .+++++..+...+..+...|+....+.+ ....|+.|..+.
T Consensus 31 I~iiG~G~~G~~la~~l~~~---g--~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 31 VGILGSGDFARSLATRLVGS---G--FKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVF 92 (215)
T ss_dssp EEEECCSHHHHHHHHHHHHT---T--CCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSC
T ss_pred EEEEccCHHHHHHHHHHHHC---C--CEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCC
Confidence 55679999999999999764 2 2688888887776666555666544322 125788887764
No 134
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=21.66 E-value=1.7e+02 Score=24.27 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=42.4
Q ss_pred HHHHHHHhccccccccCCCC-CEEEECcchh-------HHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHc--CCCE
Q 029161 26 FRAAKHTVTFLIVDTYITSG-MVVGLGSGQA-------SAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA--GIPL 95 (198)
Q Consensus 26 ~~IA~~Aa~~~~~~~~I~~g-~~IgLgsGST-------~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~--gi~v 95 (198)
..+.+.|. +++++| |+|=||.+|+ +..+++.|.+.. .. .+.|=|....++..+.+. |..+
T Consensus 34 ~~a~~~a~------~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~---~~-pisIDT~~~~v~~aal~a~~Ga~i 103 (271)
T 2yci_X 34 RPIQEWAR------RQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVV---DL-PCCLDSTNPDAIEAGLKVHRGHAM 103 (271)
T ss_dssp HHHHHHHH------HHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHC---CC-CEEEECSCHHHHHHHHHHCCSCCE
T ss_pred HHHHHHHH------HHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhC---CC-eEEEeCCCHHHHHHHHHhCCCCCE
Confidence 34555566 778888 7999999884 444555554431 22 589999999998877665 7766
Q ss_pred EE
Q 029161 96 DQ 97 (198)
Q Consensus 96 ~~ 97 (198)
+.
T Consensus 104 IN 105 (271)
T 2yci_X 104 IN 105 (271)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 135
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.30 E-value=97 Score=25.74 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+...--|..|.|+ ++...++ +.++.+.-.-..+-++|...
T Consensus 50 ~Ls~~Er~~v~~~~~------~~~~gr~pviaGvg~~~t~~ai~-la~~a~~~Gadavlv~~P~y 107 (292)
T 2ojp_A 50 TLNHDEHADVVMMTL------DLADGRIPVIAGTGANATAEAIS-LTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSCEEEECCCSSHHHHHH-HHHHTTTSSCSEEEEECCCS
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCcEEEecCCccHHHHHH-HHHHHHhcCCCEEEECCCCC
Confidence 345679999999888 666654556677776 3344444 33332221123577777653
No 136
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=21.29 E-value=3.5e+02 Score=22.40 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=39.4
Q ss_pred cCCCCCEEEE-CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCE-EEcCCC-----------CcccEE
Q 029161 41 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPL-DQYRDT-----------SQIDFA 107 (198)
Q Consensus 41 ~I~~g~~IgL-gsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v-~~l~~~-----------~~iD~a 107 (198)
-+++|++|.+ |+|..=..+++.+... | .+.+.++..|-.-...+++.|... +..... ..+|++
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~---G-a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVC---G-ASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHH---T-CSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---C-CCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEE
Confidence 4788987665 7765445555444332 1 123666666666666677778653 332210 148999
Q ss_pred EeecC
Q 029161 108 FDDAD 112 (198)
Q Consensus 108 f~Gad 112 (198)
|+.+.
T Consensus 263 id~~g 267 (371)
T 1f8f_A 263 LESTG 267 (371)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 98764
No 137
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=21.25 E-value=1.3e+02 Score=25.36 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=35.5
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcchh-HHHHHHHHHHHhhc-CCCCCeEEEcCc
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQA-SAMAIEYMGRQLRA-GALKDVIGIPTS 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST-~~~la~~L~~~~~~-~~l~~itvVTnS 81 (198)
+-..+||+++.+.++ +.+...--|..|+|++ +...++.. ++.+. |....+-++|..
T Consensus 56 ~Ls~~Er~~v~~~~~------~~~~grvpViaGvg~~~t~~ai~la-~~A~~~Ga~davlv~~P~ 113 (311)
T 3h5d_A 56 TLTHDEELELFAAVQ------KVVNGRVPLIAGVGTNDTRDSIEFV-KEVAEFGGFAAGLAIVPY 113 (311)
T ss_dssp GSCHHHHHHHHHHHH------HHSCSSSCEEEECCCSSHHHHHHHH-HHHHHSCCCSEEEEECCC
T ss_pred hCCHHHHHHHHHHHH------HHhCCCCcEEEeCCCcCHHHHHHHH-HHHHhcCCCcEEEEcCCC
Confidence 345779999999999 8887666677788863 44444433 33232 433467777754
No 138
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=21.02 E-value=1e+02 Score=25.81 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=33.8
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCcH
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSV 82 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS~ 82 (198)
+-..+||+++.+.++ +.+...--|..|+|+ ++...++......+.|. ..+-++|...
T Consensus 61 ~Ls~eEr~~v~~~~~------~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga-davlv~~P~y 118 (301)
T 1xky_A 61 TLTSEEKVALYRHVV------SVVDKRVPVIAGTGSNNTHASIDLTKKATEVGV-DAVMLVAPYY 118 (301)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTC-SEEEEECCCS
T ss_pred hCCHHHHHHHHHHHH------HHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCC-CEEEEcCCCC
Confidence 345689999999888 777655556677775 33444433332212232 3577777653
No 139
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=20.89 E-value=92 Score=25.93 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcch-hHHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGS-T~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+-..+||+++.+.++ +.+...--|..|.|+ ++...++......+.|. ..+-++|..
T Consensus 51 ~Lt~~Er~~v~~~~~------~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga-davlv~~P~ 107 (292)
T 3daq_A 51 TLTTDEKELILKTVI------DLVDKRVPVIAGTGTNDTEKSIQASIQAKALGA-DAIMLITPY 107 (292)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC-SEEEEECCC
T ss_pred cCCHHHHHHHHHHHH------HHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCC-CEEEECCCC
Confidence 345789999999998 777655556667774 33333333322212232 467777754
No 140
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=20.86 E-value=60 Score=24.81 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=28.0
Q ss_pred ECcchhHHHHHHHHHHHhhcCCCCCeEEEcCcHHHHHHHHHcCCCEEEc
Q 029161 50 LGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQY 98 (198)
Q Consensus 50 LgsGST~~~la~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l 98 (198)
++||+|..++++.|.+.... ...-.+++.-.-.....+...|+++..+
T Consensus 116 itTG~Tl~~~~~~L~~~Ga~-~v~~~~l~~r~~~~~~~l~~~g~~~~sl 163 (178)
T 2yzk_A 116 ATTGTSIAKSIEVLRSNGYT-VGTALVLVDRGEGAGELLARMGVRLVSV 163 (178)
T ss_dssp ESSSHHHHHHHHHHHHTTCE-EEEEEEEEECCSSHHHHHHTTTCEEEEE
T ss_pred cCCcHHHHHHHHHHHHcCCe-EEEEEEEEEcCcCHHHHHHHcCCcEEEE
Confidence 58999999999999764210 0111223322123444566678887765
No 141
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.78 E-value=88 Score=26.50 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHHHHhccccccccCCCCCEEEECcchh-HHHHHHHHHHHhhcCCCCCeEEEcCc
Q 029161 19 SNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQA-SAMAIEYMGRQLRAGALKDVIGIPTS 81 (198)
Q Consensus 19 ~~~~~~K~~IA~~Aa~~~~~~~~I~~g~~IgLgsGST-~~~la~~L~~~~~~~~l~~itvVTnS 81 (198)
+-..+||+++.+.++ +.+...--|..|+|++ +...++......+.|. ..+-++|..
T Consensus 71 ~Ls~~Er~~v~~~~v------~~~~grvpViaGvg~~st~~ai~la~~A~~~Ga-davlv~~P~ 127 (315)
T 3si9_A 71 TLTHEEHKRIIELCV------EQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGA-DAVLVVTPY 127 (315)
T ss_dssp GSCHHHHHHHHHHHH------HHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTC-SEEEEECCC
T ss_pred ccCHHHHHHHHHHHH------HHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCC-CEEEECCCC
Confidence 345779999999998 7776655677788753 3333333322222232 467777754
No 142
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=20.75 E-value=67 Score=23.48 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.6
Q ss_pred ECcchhHHHHHHHHHHH
Q 029161 50 LGSGQASAMAIEYMGRQ 66 (198)
Q Consensus 50 LgsGST~~~la~~L~~~ 66 (198)
++||+|..++++.|.+.
T Consensus 93 itTG~Tl~~a~~~L~~~ 109 (153)
T 1vdm_A 93 SDTGKTLEVVIEEVKKL 109 (153)
T ss_dssp ESSCHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHHc
Confidence 58999999999999754
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=20.55 E-value=97 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=17.4
Q ss_pred HHHHHHHHhccccccccCCCCCEEEE----CcchhH
Q 029161 25 LFRAAKHTVTFLIVDTYITSGMVVGL----GSGQAS 56 (198)
Q Consensus 25 K~~IA~~Aa~~~~~~~~I~~g~~IgL----gsGST~ 56 (198)
-.+|+.++. +..++|.+|+| |||-||
T Consensus 8 ~~~~~~~~~------~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 8 CQGVLERLD------PRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHHSC------TTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHH------hcCCCCeEEEEECCCCCCHHH
Confidence 345666655 55678999998 677444
No 144
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=20.45 E-value=1.9e+02 Score=23.37 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=31.5
Q ss_pred EEEE--CcchhHHHHHHHHHHHhhcCCCCCeEEEcCcH--HHHHHHHHcCCCEEEc
Q 029161 47 VVGL--GSGQASAMAIEYMGRQLRAGALKDVIGIPTSV--ASANEAAVAGIPLDQY 98 (198)
Q Consensus 47 ~IgL--gsGST~~~la~~L~~~~~~~~l~~itvVTnS~--~~a~~l~~~gi~v~~l 98 (198)
++++ |+|+....+++.|.+..- ...=+-||||.- .....+.++||++..+
T Consensus 25 I~~l~SG~g~~~~~~l~~l~~~~~--~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~ 78 (229)
T 3auf_A 25 IGVLISGSGTNLQAILDGCREGRI--PGRVAVVISDRADAYGLERARRAGVDALHM 78 (229)
T ss_dssp EEEEESSCCHHHHHHHHHHHTTSS--SEEEEEEEESSTTCHHHHHHHHTTCEEEEC
T ss_pred EEEEEeCCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCchHHHHHHHHcCCCEEEE
Confidence 5566 888888888888764200 001145788742 3445678899998754
Done!