RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029161
(198 letters)
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea.
Length = 213
Score = 119 bits (302), Expect = 4e-34
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 27 RAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN 86
AA+ V Y+ GMV+GLG+G A IE +G ++R +++G+PTS +
Sbjct: 4 AAARAAVD------YVEDGMVIGLGTGSTVAYFIEALGERVREE-GLNIVGVPTSFQTEE 56
Query: 87 EAAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADK 146
A GIPL + ++D A D AD ++ L + G G ++++EK V +AA K
Sbjct: 57 LARELGIPLTDLDEVPRLDLAIDGADEVDP-DLNLIKG-----GGGALLREKIVASAAKK 110
Query: 147 LVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDL 183
+ + E++ L +PV V P W A E++ L
Sbjct: 111 FIVIADESKLVERLGEFPLPVEVVPFAWSYVARELEKL 148
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase.
Length = 264
Score = 84.1 bits (208), Expect = 6e-20
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 9/147 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
++ SGMV+GLG+G + A++ +G LR G LK++IGIPTS + +A GIPL
Sbjct: 46 FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDS 105
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQ---YK 157
+D A D AD ++ L V GR S+++EK + A K V +V E++ +
Sbjct: 106 HPVVDLAIDGADEVDP-NLNLVKGR-----GGSLLREKMIEGACKKFVVIVDESKLVKHI 159
Query: 158 GVLDGSVPVLVQPVNWMETAEEIDDLF 184
G ++PV V P W TAE++ LF
Sbjct: 160 GGSGLAMPVEVVPFCWKFTAEKLQSLF 186
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model
describes ribose 5-phosphate isomerase, an enzyme of the
non-oxidative branch of the pentose phosphate pathway
[Energy metabolism, Pentose phosphate pathway].
Length = 218
Score = 80.3 bits (199), Expect = 6e-19
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 38 VDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97
Y+ GMVVGLG+G A IE +G +++ L D++G+PTS +A A GIPL
Sbjct: 9 AAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELARELGIPLSS 67
Query: 98 YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYK 157
+ ++D A D AD ++ L + G G ++++EK V +A+ + + + E++
Sbjct: 68 LDEVPELDLAIDGADEVDPN-LQLIKG-----GGGALLREKIVASASKRFIVIADESKLV 121
Query: 158 GVL-DGSVPVLVQPVNWMETAEEI 180
L +PV V P W A ++
Sbjct: 122 DKLGKFPLPVEVVPFAWKAVARKL 145
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 80.3 bits (199), Expect = 8e-19
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ GMV+GLG+G +A IE +GR+++ D+ G+PTS + A GIP+ +
Sbjct: 17 YVKDGMVIGLGTGSTAAYFIEALGRRVKGE--LDIGGVPTSFQTEELARELGIPVSSLNE 74
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
+D A D AD ++ L + G G ++++EK V +AA + + +V E++ VL
Sbjct: 75 VDSLDLAIDGADEVDPN-LNLIKG-----GGGALLREKIVASAAKRFIVIVDESKLVEVL 128
Query: 161 DG-SVPVLVQPVNWMETAEEIDDL 183
+PV V P +++ L
Sbjct: 129 GKFPLPVEVIPFARSAVLRKLEKL 152
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional.
Length = 220
Score = 69.7 bits (172), Expect = 7e-15
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ GM+VGLG+G +A I+ +G +++ G + G+PTS AS A GIPL +
Sbjct: 17 YVEDGMIVGLGTGSTAAYFIDALGERVKEG--LIIGGVPTSEASTELAKELGIPLFDLNE 74
Query: 101 TSQIDFAFDDAD-IIEEGTLVAVIGRQQPKG-DESIIQEKSVLNAADKLVFMVSENQYKG 158
+D D AD I L+ KG ++ +EK V AA + + +V E++
Sbjct: 75 VDSLDLYVDGADEIDPHLNLI--------KGGGAALTREKIVAAAAKRFICIVDESKLVD 126
Query: 159 VLDG-SVPVLVQPVNWMETAEEIDDL 183
VL +PV V P A E++ L
Sbjct: 127 VLGKFPLPVEVIPFARSAVARELEKL 152
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A
(phosphoriboisomerase A). This family consists of
several ribose 5-phosphate isomerase A or
phosphoriboisomerase A (EC:5.3.1.6) from bacteria,
eukaryotes and archaea.
Length = 172
Score = 53.6 bits (130), Expect = 3e-09
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 75 VIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI 134
++G+PTS + A GIPL + ++D A D AD ++ L + G G ++
Sbjct: 1 IVGVPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPN-LNLIKG-----GGGAL 54
Query: 135 IQEKSVLNAADKLVFMVSENQYKGVLDG-SVPVLVQPVNWMETAEEI 180
++EK V +AA K + +V E++ VL +PV V P W +
Sbjct: 55 LREKIVASAAKKFIVIVDESKLVDVLGKFPLPVEVVPFAWSYVLRRL 101
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional.
Length = 228
Score = 43.6 bits (103), Expect = 2e-05
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 42 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT 101
I M +G+G+G + + M + ++ + G+ TS A A GI + + D
Sbjct: 19 INGDMTLGIGTGSTMELLLPQMAQLIKERGYN-ITGVCTSNKIAFLAKELGIKICEINDV 77
Query: 102 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD 161
ID A D AD ++ +L + G G ++ +EK + A + V +V E + L
Sbjct: 78 DHIDLAIDGADEVDP-SLNIIKG-----GGGALFREKVIDEMASRFVVVVDETKIVQYLG 131
Query: 162 GS--VPVLVQPVNWMETAEEIDD 182
+ +PV V NW +I+
Sbjct: 132 ETFKLPVEVDKFNWYHILRKIES 154
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 40.8 bits (95), Expect = 1e-04
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 18/158 (11%)
Query: 28 AAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANE 87
A K MV+GLG+G A + +G +L+ G + D++G PT
Sbjct: 4 ALKFIEDKXEKLLEEKDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTD------ 57
Query: 88 AAVAGIPLDQYRDTSQID-FAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADK 146
+ Q AF+ I V + P E+ +L+ D
Sbjct: 58 -ERYVPLDSDQSNFRQAKLLAFEHDIIPASN--VHYVDTSLPIEKACEKYEREILDQVDA 114
Query: 147 L-VFMVSENQYKGVLDGSVPVLV---QPVNWMETAEEI 180
+ + + G G+V VLV + V+++ E
Sbjct: 115 IDLAVDG----AGYRAGTVIVLVDGRKKVDYLCQNTEP 148
>gnl|CDD|216715 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalyzing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalyzed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme
catalyzes the formylation of AICAR with
10-formyl-tetrahydrofolate to yield FAICAR and
tetrahydrofolate. This is catalyzed by a pair of
C-terminal deaminase fold domains in the protein, where
the active site is formed by the dimeric interface of
two monomeric units. The last step is catalyzed by the
N-terminal IMP (Inosine monophosphate) cyclohydrolase
domain EC:3.5.4.10 (IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP.
Length = 315
Score = 29.3 bits (66), Expect = 1.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 27 RAAKHTVTFLIVDTYITSGMVVGLGSGQAS 56
+ KH + IV Y +GM VG+G+GQ S
Sbjct: 276 KVVKHVKSNAIV--YAKNGMTVGIGAGQQS 303
>gnl|CDD|117527 pfam08961, DUF1875, Domain of unknown function (DUF1875). The MIT
domain, found in Nuclear receptor-binding factor 2, has
no known function.
Length = 243
Score = 29.0 bits (64), Expect = 1.4
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 123 IGRQQPKGDESIIQEKSV-LNAADKLV-FMVSENQ 155
IG + PK D++II+E++ + + V F+V+EN+
Sbjct: 112 IGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENE 146
>gnl|CDD|232936 TIGR00355, purH, phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase. PurH is
bifunctional: IMP cyclohydrolase (EC 3.5.4.10);
phosphoribosylaminoimidazolecarboxamide
formyltransferase (EC 2.1.2.3) Involved in purine
ribonucleotide biosynthesis. The IMP cyclohydrolase
activity is in the N-terminal region [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 511
Score = 29.4 bits (66), Expect = 1.4
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Query: 27 RAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN 86
+ AKH + IV Y + M VG+G+GQ S R G+ K I +
Sbjct: 404 KVAKHVKSNAIV--YAKNNMTVGVGAGQMS-----------RVGSAK--IAGIKADDEGL 448
Query: 87 EAAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADK 146
EA + + D + F F D +EE + QP G ++++ + AAD+
Sbjct: 449 EAKGSSLASDAF-------FPFRDG--VEEAAAAGITCIIQPGGS---MRDEDSIWAADE 496
Query: 147 L-VFMVS 152
+ MV
Sbjct: 497 HGIVMVF 503
>gnl|CDD|233974 TIGR02682, cas_csx11, CRISPR-associated protein, Csx11 family.
Members of this uncommon, sporadically distributed
protein family are large (>900 amino acids) and strictly
associated, so far, with CRISPR-associated (Cas) gene
clusters. Nearby Cas genes always include members of the
RAMP superfamily and the six-gene CRISPR-associated RAMP
module. Species in which it is found, so far, include
three archaea (Methanosarcina mazei, M. barkeri and
Methanobacterium thermoautotrophicum) and two bacteria
(Thermodesulfovibrio yellowstonii DSM 11347 and
Sulfurihydrogenibium azorense) [Mobile and
extrachromosomal element functions, Other].
Length = 918
Score = 29.1 bits (65), Expect = 1.8
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 98 YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESI----------IQEKSVLNAADKL 147
YRD + I F + D E+ L ++ + +E I + +L A +
Sbjct: 286 YRDDTGIYFIVPELDKNEDNNLAVLVDDLKLLEEEIINEFEEKITGEVCSVILLTKASRG 345
Query: 148 VFMVSENQYK 157
+ +S+
Sbjct: 346 LMNLSDLVEP 355
>gnl|CDD|205207 pfam13026, DUF3887, Protein of unknown function (DUF3887). This
family of lipoproteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 128 and 167 amino
acids in length. The proteins in this family contain an
N-terminal lipid attachment site.
Length = 101
Score = 27.2 bits (60), Expect = 2.6
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 137 EKSVLNAADKLVFMVSENQYKGVLDGSVPVLVQPVNWMETAEE 179
+++V +A+++V MV+E Y+ V + + + +NW E A+E
Sbjct: 4 KENVEQSAEEIVTMVNEKVYRDVHNKFDEKMNKALNW-EEAKE 45
>gnl|CDD|217959 pfam04198, Sugar-bind, Putative sugar-binding domain. This
probable domain is found in bacterial transcriptional
regulators such as DeoR and SorC. These proteins have
an amino-terminal helix-turn-helix pfam00325 that binds
to DNA. This domain is probably the ligand regulator
binding region. SorC is regulated by sorbose and other
members of this family are likely to be regulated by
other sugar substrates.
Length = 255
Score = 28.0 bits (63), Expect = 2.8
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 17 ALSNGSSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVI 76
++ L + +L + + G VVG+G G+ + E + + +L+DV
Sbjct: 27 DDADEDDTLEALGRAAAQYL--SSLLKDGDVVGVGWGRTLSAVAEALTPK----SLRDVK 80
Query: 77 GIP 79
+P
Sbjct: 81 FVP 83
>gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi
alpha-mannosidase IIx, and similar proteins; glycoside
hydrolase family 38 (GH38). This subfamily is
represented by human alpha-mannosidase 2x (MX, also
known as mannosyl-oligosaccharide 1,3- 1,6-alpha
mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically
and functionally very similar to GMII (found in another
subfamily), and as an isoenzyme of GMII. It is thought
to also function in the N-glycosylation pathway. MX
specifically hydrolyzes the same oligosaccharide
substrate as does MII. It specifically removes two
mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield
GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine).
Length = 344
Score = 28.0 bits (62), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 79 PTSVASANEAAVAGIPLDQYRDTSQI 104
P ++ AN A A + LDQYR S++
Sbjct: 224 PRAITEANVAERAQLLLDQYRKKSKL 249
>gnl|CDD|219692 pfam08002, DUF1697, Protein of unknown function (DUF1697). This
family contains many hypothetical bacterial proteins.
Length = 136
Score = 26.8 bits (60), Expect = 4.6
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 38 VDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG--IPTSVASANE--AAVAGI 93
V TYI SG VV S + +E ++ AL++ G +P V SA E A VA
Sbjct: 35 VRTYIQSGNVV-FESSERDEAELE---AKIEK-ALEERFGFEVPVLVRSAEELRAIVAAN 89
Query: 94 P-LDQYRDTSQIDFAFDDADIIEE 116
P + + +++ F +
Sbjct: 90 PFPWESAEPNRLHVLFLSEPPDAD 113
>gnl|CDD|223216 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only
IMP cyclohydrolase domain in Aful) [Nucleotide transport
and metabolism].
Length = 515
Score = 27.2 bits (61), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 26 FRAAKHTVTFLIVDTYITSGMVVGLGSGQAS 56
++ KH + IV Y G VG+G+GQ S
Sbjct: 407 WKVVKHVKSNAIV--YAKDGQTVGIGAGQMS 435
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 26.7 bits (59), Expect = 9.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 24 VLFRAAKHTVTFLIVDTYI------TSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG 77
VL A ++ F TY+ T+GM + SG +A +M Q GAL D IG
Sbjct: 248 VLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIG 307
Query: 78 IPTSV 82
TS+
Sbjct: 308 RRTSM 312
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 26.4 bits (58), Expect = 9.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 45 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVI 76
G++VG+ SG A+A AI+ R AG L VI
Sbjct: 263 GLLVGISSGAAAAAAIKIAKRPENAGKLIVVI 294
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 26.6 bits (59), Expect = 9.9
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 31 HTVTFLIVDT--------------YITSGMVVGLGSGQASAMAIEYMGRQLRAG-ALKDV 75
V+F I+D + +G++ GLG+G A + + +R+ L+++
Sbjct: 392 KAVSFRIIDPPIVPSKPSGPNRPLLMLAGLLGGLGAGIGLAFLLSQLRPTVRSVRDLREL 451
Query: 76 IGIP 79
G+P
Sbjct: 452 TGLP 455
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.359
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,037,909
Number of extensions: 957339
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1001
Number of HSP's successfully gapped: 43
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.1 bits)