RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029161
(198 letters)
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein
structure initiative, STRU genomics of pathogenic
protozoa consortium; 2.09A {Plasmodium falciparum}
Length = 244
Score = 84.1 bits (209), Expect = 3e-20
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 17/154 (11%)
Query: 38 VDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 97
VD Y+ S M +GLG+G +E + L++G LKDV+ IPTS+ + +A GIPL
Sbjct: 21 VDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTT 80
Query: 98 YRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSENQ 155
S ID D D I L+ KG ++++EK V +++ L+ + E+
Sbjct: 81 LEKHSNIDITIDGTDEIDLNLNLI--------KGRGGALVREKLVASSSSLLIIIGDES- 131
Query: 156 YKGVLDG-----SVPVLVQPVNWMETAEEIDDLF 184
K +G +VP+ + + + E + ++
Sbjct: 132 -KLCTNGLGMTGAVPIEILTFGYEKIIENLLKIY 164
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB:
1lk7_A*
Length = 229
Score = 82.9 bits (206), Expect = 5e-20
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
+I MV+GLG+G +A I+ +G +L+ G + D++G+PTS + A IP+
Sbjct: 17 FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQ 76
Query: 101 TSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSENQYKG 158
ID A D AD + L+ KG ++ EK + A + +V E +
Sbjct: 77 VDAIDVAVDGADEVDPNLNLI--------KGRGAALTMEKIIEYRAGTFIVLVDERKLVD 128
Query: 159 VLDGS--VPVLVQPVNWMETAEEIDDL 183
L VP+ V P W EE+
Sbjct: 129 YLCQKMPVPIEVIPQAWKAIIEELSIF 155
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomi initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 77.9 bits (193), Expect = 4e-18
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ GMVVGLG+G + A+ + R+LR G LK V+G+PTS A+ A GIPL
Sbjct: 19 YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDL-P 77
Query: 101 TSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSENQYKG 158
+D A D AD I L+ KG ++++EK V A + + + +
Sbjct: 78 PEGVDLAIDGADEIAPGLALI--------KGMGGALLREKIVERVAKEFIVIADHTKKVP 129
Query: 159 VLDGS-VPVLVQPVNWMETAEEIDDL 183
VL VPV + P + T + I DL
Sbjct: 130 VLGRGPVPVEIVPFGYRATLKAIADL 155
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Length = 225
Score = 75.6 bits (187), Expect = 3e-17
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ GM+VGLG+G + +E +GR+++ L VIG+ TS + +A GIPL +
Sbjct: 15 YVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQALGIPLKSIDE 73
Query: 101 TSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSENQYKG 158
+D D AD + + KG +++ EK V +++V E++
Sbjct: 74 VDSVDVTVDGADEVDPNFNGI--------KGGGGALLMEKIVGTLTKDYIWVVDESKMVD 125
Query: 159 VLDG-SVPVLVQPVNWMETAEEIDDL 183
L +PV V E +
Sbjct: 126 TLGAFRLPVEVVQYGAERLFREFEKK 151
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics,
pentose phosphate pathway, carbon fixation, NPPSFA;
1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Length = 226
Score = 74.8 bits (185), Expect = 6e-17
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
+ GMV+GLG+G +A+ I +G ++R L V GIPTS + A IPL +
Sbjct: 17 LVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDE 75
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
+D AFD AD +EE TL + G G QEK V A++ V +V E++ L
Sbjct: 76 YD-VDIAFDGADEVEETTLFLIKG-----GGGCHTQEKIVDYNANEFVVLVDESKLVKKL 129
Query: 161 DGS--VPVLVQPVNWMETAEEIDDL 183
+PV V P + + ++
Sbjct: 130 GEKFPIPVEVIPSAYRVVIRALSEM 154
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119,
center for structu genomics of infectious diseases,
csgid; 2.32A {Francisella tularensis subsp}
Length = 224
Score = 74.1 bits (183), Expect = 1e-16
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 15/146 (10%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
IT+ + +G+G+G IE + K + +S S + G +
Sbjct: 23 SITTEITLGVGTGSTVGFLIEELVNY----RDKIKTVVSSSEDSTRKLKALGFDVVDLNY 78
Query: 101 TSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSENQYKG 158
+ID D AD L+ KG ++ +EK + AA K + ++ E++
Sbjct: 79 AGEIDLYIDGADECNNHKELI--------KGGGAALTREKICVAAAKKFICIIDESKKVN 130
Query: 159 VLDG-SVPVLVQPVNWMETAEEIDDL 183
L +P+ V P+ A +I L
Sbjct: 131 TLGNFPLPIEVIPMARSYIARQIVKL 156
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative,
MCSG, midwest center for structural genomics; HET: ABF;
1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB:
1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Length = 219
Score = 73.7 bits (182), Expect = 1e-16
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ G +VG+G+G +A I+ +G G + + +S AS + GI + +
Sbjct: 17 YVQPGTIVGVGTGSTAAHFIDALGT--MKG--QIEGAVSSSDASTEKLKSLGIHVFDLNE 72
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
+ D AD I G + + G G ++ +EK + + A+K + + ++ +L
Sbjct: 73 VDSLGIYVDGADEI-NGHMQMIKG-----GGAALTREKIIASVAEKFICIADASKQVDIL 126
Query: 161 DG-SVPVLVQPVNWMETAEEIDDL 183
+PV V P+ A ++ L
Sbjct: 127 GKFPLPVEVIPMARSAVARQLVKL 150
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 73.7 bits (182), Expect = 1e-16
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 16/147 (10%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ + +VG+GSG IE +G K + S S GI + D
Sbjct: 17 YVKADRIVGVGSGSTVNCFIEALGTI----KDKIQGAVAASKESEELLRKQGIEVFNAND 72
Query: 101 TSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSENQYKG 158
S +D D AD I + ++ KG ++ +EK V A K + +V ++
Sbjct: 73 VSSLDIYVDGADEINPQKMMI--------KGGGAALTREKIVAALAKKFICIVDSSKQVD 124
Query: 159 VLDGS--VPVLVQPVNWMETAEEIDDL 183
VL + +PV V P+ + ++ L
Sbjct: 125 VLGSTFPLPVEVIPMARSQVGRKLAAL 151
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics
center for infectious DI isomerase, ribose isomerase;
HET: R5P; 1.71A {Burkholderia thailandensis} PDB:
3u7j_A*
Length = 239
Score = 73.8 bits (182), Expect = 2e-16
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 27 RAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN 86
+ + V + G V+G+G+G + I+ + + + +SVA+
Sbjct: 17 LVGEAAARY--VTDNVPQGAVIGVGTGSTANCFIDALAAVKD----RYRGAVSSSVATTE 70
Query: 87 EAAVAGIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAA 144
GI + + + D AD I E G ++ KG ++ +EK V + A
Sbjct: 71 RLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMI--------KGGGGALTREKIVASVA 122
Query: 145 DKLVFMVSENQYKGVLDGS-VPVLVQPVNWMETAEEIDDL 183
+ V + ++ +L +PV V P+ + L
Sbjct: 123 ETFVCIADASKRVAMLGQFPLPVEVVPMARTAIGRRLAAL 162
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
STRU genomics, seattle structural genomics center for
infectious; HET: 5RP; 2.30A {Bartonella henselae}
Length = 255
Score = 73.8 bits (182), Expect = 2e-16
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 13/147 (8%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
++ M +G+GSG I +G ++ G V + TS S G+P+
Sbjct: 38 FVEDDMRLGIGSGSTVNEFIPLLGERVANG--LRVTCVATSQYSEQLCHKFGVPISTLEK 95
Query: 101 TSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSENQYKG 158
++D D AD I E TL+ KG +++ EK V +A+ + + E +
Sbjct: 96 IPELDLDIDGADEIGPEMTLI--------KGGGGALLHEKIVASASRAMFVIADETKMVK 147
Query: 159 VLDG-SVPVLVQPVNWMETAEEIDDLF 184
L ++P+ V P T I+
Sbjct: 148 TLGAFALPIEVNPFGIHATRIAIEKAA 174
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae}
Length = 264
Score = 70.0 bits (172), Expect = 7e-15
Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 19/158 (12%)
Query: 40 TYITSGMVVGLGSGQASAMAIEYMGRQLRAGALK----DVIGIPTSVASANEAAVAGIPL 95
++G+GSG E +G+ L I IPT S N + L
Sbjct: 34 LKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKLQL 93
Query: 96 DQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSE 153
+ID AFD AD + E L+ KG + QEK V +A + +
Sbjct: 94 GSIEQYPRIDIAFDGADEVDENLQLI--------KGGGACLFQEKLVSTSAKTFIVVADS 145
Query: 154 NQYKGVLDGS-----VPVLVQPVNWMETAEEIDDLFIG 186
+ G VP+ + P +++ ++ +
Sbjct: 146 RKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQLHA 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 4e-05
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 28/121 (23%)
Query: 97 QYRDTSQI---DFA--FDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 151
QY+D + F FD D+ + +++ +++ + II K ++ +L + +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDM--PKSILSKEEI---DHIIMSKDAVSGTLRLFWTL 71
Query: 152 SENQYKGVLDGSVPVLVQPVNWMETA----------------EEIDDLFIGDAEVFSIPY 195
Q + V VL ++ + E+ D L+ D +VF+ Y
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQVFA-KY 129
Query: 196 N 196
N
Sbjct: 130 N 130
Score = 31.7 bits (71), Expect = 0.14
Identities = 22/232 (9%), Positives = 66/232 (28%), Gaps = 79/232 (34%)
Query: 1 MNKTMIRGSSSSDSSR----ALSNGSSVLFRAAKHTVTFLIVD----------------T 40
++ S S + + ++ L ++ + L++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 41 YITS---GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG--IPTSVASANEAAVAGIPL 95
+T+ + L + + +++++ L +K ++ + + P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 96 DQYRDTSQIDFAFDDADIIEEGTLVAVIGR------------QQPKGDE-SIIQEKSV-- 140
+++I + D+ + I E S+
Sbjct: 329 -----------------------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 141 LNAAD------KL-VFMVSENQYKGVLDGSVPVLVQPVNWMETAEEIDDLFI 185
L A+ +L VF S + +P ++ + W + + + +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH---------IPTILLSLIWFDVIKSDVMVVV 408
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.004
Identities = 42/251 (16%), Positives = 80/251 (31%), Gaps = 100/251 (39%)
Query: 6 IRGSS--SSD--SSRALSNGSSV--LFRAAKHTVT--FLIV--------DTYITSGMV-- 47
++G++ S ++ A++ S F + + +T F I +T + ++
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 48 -VGLGSGQASAM-AIEYMGRQLRAGALKDVIG-----IPT----SVA---SANEAAVAGI 93
+ G S M +I L ++D + +P ++ A V+G
Sbjct: 327 SLENNEGVPSPMLSI----SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 94 PLDQYR--------------DTSQIDFA---------F------------DDA-DIIEEG 117
P Y D S+I F+ F A D+I +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK- 441
Query: 118 TLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKG----VLDGSVP------VL 167
D + + +V A + V + + G VL GS+ ++
Sbjct: 442 -------------D---LVKNNVSFNAKDIQIPV-YDTFDGSDLRVLSGSISERIVDCII 484
Query: 168 VQPVNWMETAE 178
PV W T +
Sbjct: 485 RLPVKWETTTQ 495
Score = 35.8 bits (82), Expect = 0.008
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 52/167 (31%)
Query: 22 SSVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMAIEY-MGRQLRAGALKDVIGIPT 80
+S FR+ K L+ T T Q + +E L++ K +I
Sbjct: 1715 TSYTFRSEKG----LLSATQFT----------QPALTLMEKAAFEDLKS---KGLIPADA 1757
Query: 81 SVA-------SANEAAVAGIPLDQYRDTSQIDFAFDDA-DIIEE-GTLV--AVIGRQQPK 129
+ A +A A++A + + + +++ G + AV + +
Sbjct: 1758 TFAGHSLGEYAAL-ASLADV------------MSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 130 GDESII----QEKSVLNAADKLVFMVSENQYKGVLDGSVPVLVQPVN 172
+ +I + + + L ++V + G + V+ VN
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKR---TGWL---VEIVN 1845
Score = 33.5 bits (76), Expect = 0.042
Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 69/197 (35%)
Query: 9 SSSSDSSRALSNGSSVL--------------FRAAKHTVTF-LIVDT----YITSGMVVG 49
++ D+ + + G ++L + ++ LI Y+ + ++G
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAKLLG 257
Query: 50 LGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASA--------NEAAVAGIPL------ 95
G+ R GA G+ T+VA A + I +
Sbjct: 258 FTPGEL---------RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 96 ---DQYRDTSQIDFAFDDADIIEEGT---LVAVIG--RQQPKGDESIIQEK--------- 138
+ Y +TS +D+ EG ++++ ++Q + + +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV---QDYVNKTNSHLPAGKQ 365
Query: 139 ---SVLNAADKLVFMVS 152
S++N A LV VS
Sbjct: 366 VEISLVNGAKNLV--VS 380
Score = 31.2 bits (70), Expect = 0.25
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 92 GIPLDQYRDTSQIDFAFDDADIIEEGTL---VAVIGRQQPKGDESIIQEKSVLNAADKLV 148
G+ +D Y+ + ++ AD + T + I P ++ +K
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-------NLTIHFGGEKGK 1682
Query: 149 FMVSEN----QYKGVLDGSVPVLVQPVNWMETAEEIDDL-FIGDAEVFSIPYN 196
+ EN ++ ++DG + + + E E F + + S
Sbjct: 1683 -RIRENYSAMIFETIVDGKLK--TEKIF-KEINEHSTSYTFRSEKGLLSATQF 1731
Score = 28.9 bits (64), Expect = 1.2
Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 34/111 (30%)
Query: 66 QLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD-------TSQIDFAFDD--ADIIEE 116
L G+L+ V+ +PT+ Q ++ FA DD E
Sbjct: 10 TLSHGSLEHVLLVPTASFFI---------ASQLQEQFNKILPEPTEGFAADDEPTTPAE- 59
Query: 117 GTLVA----VIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDGS 163
LV + Q VL L EN Y L+G+
Sbjct: 60 --LVGKFLGYVSSLVEPSKVG--QFDQVL----NLCLTEFENCY---LEGN 99
Score = 26.9 bits (59), Expect = 5.7
Identities = 32/199 (16%), Positives = 55/199 (27%), Gaps = 87/199 (43%)
Query: 3 KTMIRG--SSSSDSSRALSNGS-SVLFRAAKHTVTFLIVDTYITSGMVVGLGSGQASAMA 59
K +I+ ++ + R S S LFRA G A +A
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVG---------------------EGNAQLVA 158
Query: 60 I--------EYMGRQLR------AGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQID 105
I +Y +LR + D+I +A L R T +
Sbjct: 159 IFGGQGNTDDYF-EELRDLYQTYHVLVGDLI---------KFSAETLSEL--IRTTLDAE 206
Query: 106 FAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDGSVP 165
F +G + L + Y L S+P
Sbjct: 207 KVF-------------------TQG----LNILEWLENPSN----TPDKDY---LL-SIP 235
Query: 166 V------LVQPVNWMETAE 178
+ ++Q +++ TA+
Sbjct: 236 ISCPLIGVIQLAHYVVTAK 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.12
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 12/42 (28%)
Query: 137 EKSVLNAADKLVFMVSENQYKGVLDGSVPVLVQPVNWMETAE 178
EK A KL + K D S P L + T E
Sbjct: 18 EK---QALKKL-----QASLKLYADDSAPALA--IK--ATME 47
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional
domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A
{Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A*
2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A*
1p4r_A* 1pl0_A*
Length = 593
Score = 28.1 bits (63), Expect = 2.3
Identities = 24/134 (17%), Positives = 38/134 (28%), Gaps = 16/134 (11%)
Query: 26 FRAAKHTVTFLIVDTYITSGMVVGLGSGQ---------ASAMAIEYMGRQLRAGALKDVI 76
A K+T + + Y G V+G+G+GQ A A + R
Sbjct: 423 SIAVKYTQSNSVC--YAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFK 480
Query: 77 GIPTSVASANEAAVA---GIPLDQYRDTSQIDFAFDDADI--IEEGTLVAVIGRQQPKGD 131
+N I D+ Q F A + E+ +A + D
Sbjct: 481 AGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSD 540
Query: 132 ESIIQEKSVLNAAD 145
+V A
Sbjct: 541 AFFPFRDNVDRAKR 554
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA)
sandwich, structural genomics, J center for structural
genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans
c-125}
Length = 243
Score = 27.8 bits (61), Expect = 2.3
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 36 LIVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPL 95
L+ + + G GSG + +A E RAG L V I +E L
Sbjct: 34 LVSEAVMNGGRFYVFGSGHSHMIAEEIYN---RAGGLALVTAILPPELMLHERPNKSTYL 90
Query: 96 DQYRDTSQIDFAFDDADIIEEGTLVAVIGR 125
+ + ++ + ++ +I
Sbjct: 91 E---RIEGLSKSYLKLHQVTNKDVIMIISN 117
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 27.1 bits (61), Expect = 3.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 55 ASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA 88
ASA A++ + A +D + +V AN
Sbjct: 45 ASATALKTLSAGFAAAPDRDGLL--EAVQQANLR 76
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 26.3 bits (59), Expect = 6.7
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 80 TSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEGT 118
+ + + +AG +++Y D + +F +D I E
Sbjct: 182 SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDV 220
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 26.3 bits (59), Expect = 6.7
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 110 DADI-IEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVF 149
AD+ I++G + IG + ++AA + VF
Sbjct: 18 RADLGIKDGKITQ-IGGALGPAER-------TIDAAGRYVF 50
>3cje_A OSMC-like protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
oxidoreductase; HET: MSE; 1.70A {Jannaschia SP}
Length = 167
Score = 25.8 bits (56), Expect = 7.9
Identities = 7/59 (11%), Positives = 21/59 (35%)
Query: 88 AAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADK 146
A + + ++ + + A + E + + I +++++ AA K
Sbjct: 82 AKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKK 140
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding,
autocatal cleavage, DNA replication, DNA-binding,
endonuclease; 1.90A {Mycobacterium tuberculosis}
Length = 200
Score = 26.1 bits (58), Expect = 7.9
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 114 IEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDGSVPVLVQPVNW 173
+E GT V G +G + V++ A ++ V++ + +L
Sbjct: 136 VEAGTRVVQYGYAGAEGADV----AEVVDRAQAEIYDVADRRLSEDFVALEDLL------ 185
Query: 174 METAEEIDDLF 184
T +EID +
Sbjct: 186 QPTMDEIDAIA 196
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 25.9 bits (58), Expect = 8.4
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 80 TSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEGT 118
+ V + A V G+PL ++ + + +D I+EG
Sbjct: 175 SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGV 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.359
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,984,789
Number of extensions: 182716
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 50
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.8 bits)