RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029161
(198 letters)
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 149
Score = 65.5 bits (159), Expect = 2e-14
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
+I MV+GLG+G +A I+ +G +L+ G + D++G+PTS + A IP+
Sbjct: 17 FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQ 76
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
ID A D AD ++ + ++ EK + A + +V E + L
Sbjct: 77 VDAIDVAVDGADEVDPNLNL------IKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYL 130
Query: 161 DGSVPVLVQPVNWMETAEEID 181
++ V E ++++
Sbjct: 131 -DIADIV--IVGTREGVKKLE 148
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 60.9 bits (147), Expect = 7e-13
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 10/141 (7%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ + +VG+GSG IE +G K + S S GI + D
Sbjct: 17 YVKADRIVGVGSGSTVNCFIEALGTI----KDKIQGAVAASKESEELLRKQGIEVFNAND 72
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
S +D D AD I ++ G ++ +EK V A K + +V ++ VL
Sbjct: 73 VSSLDIYVDGADEINPQKMM------IKGGGAALTREKIVAALAKKFICIVDSSKQVDVL 126
Query: 161 DGSVPVLVQPVNWMETAEEID 181
V V E A+ ID
Sbjct: 127 FALRGADVVIVGTPEGAKVID 147
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 124
Score = 58.4 bits (141), Expect = 5e-12
Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 47 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDF 106
+VG+G+G +A I+ +G + + +S AS + GI + + +
Sbjct: 1 IVGVGTGSTAAHFIDALGTMKG----QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGI 56
Query: 107 AFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDG---S 163
D AD I + G ++ +EK + + A+K + + ++ +L
Sbjct: 57 YVDGADEINGHMQMIKGGGA------ALTREKIIASVAEKFICIADASKQVDILANRGAD 110
Query: 164 VPVLVQPVNW 173
V ++ P
Sbjct: 111 VALIGTPDGV 120
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Thermus thermophilus
[TaxId: 274]}
Length = 151
Score = 56.0 bits (134), Expect = 6e-11
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 41 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 100
Y+ GMVVGLG+G + A+ + R+LR G LK V+G+PTS A+ E A
Sbjct: 17 YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRAT-EELAKREGIPLVDLP 75
Query: 101 TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL 160
+D A D AD I G + ++ + + A + + + + VL
Sbjct: 76 PEGVDLAIDGADEIAPGLALIKGMGGALLREKIVER------VAKEFIVIADHTKKVPVL 129
Query: 161 DGS----VPVLVQPVNWMET 176
++ P E
Sbjct: 130 LFVGMATRALVAGPFGVEEL 149
>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae,
tu901 [TaxId: 1932]}
Length = 87
Score = 24.6 bits (53), Expect = 3.4
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 162 GSVPVLVQPVNWMETAEEI 180
G++PV + VNW+E+ +
Sbjct: 30 GTMPVAIYGVNWVESGNNV 48
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 25.8 bits (55), Expect = 3.6
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 26 FRAAKHTVTFLIVDTYITSGMVVGL-GSGQASAM-AIEY-MG---RQLRAGALKDVIGIP 79
F++ + ++ T ++G GSG+++ M AI + +G LR+ LKD+I
Sbjct: 11 FKSYRGVTKVGFGESNFT--SIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRG 68
Query: 80 TSVAS-ANEAAVAGIPLDQYRDTSQIDFAFDDADIIE 115
+++ G + F ++E
Sbjct: 69 VLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVE 105
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 25.6 bits (55), Expect = 4.3
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 78 IPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEG 117
+ ++E + L + AFD ++II +
Sbjct: 152 HGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKA 191
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
1085]}
Length = 320
Score = 25.5 bits (56), Expect = 4.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 85 ANEAAVAGIPLDQY-RDTSQIDFAFD----DADIIEEG 117
A +A G+P+ Y R+ ++ AF+ DAD I G
Sbjct: 276 AWQAWRDGVPVLDYAREHKELARAFESFPGDADQIYPG 313
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Length = 74
Score = 23.6 bits (51), Expect = 7.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 164 VPVLVQPVNWMETAEEIDDL 183
VPV + P + T + I DL
Sbjct: 5 VPVEIVPFGYRATLKAIADL 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.359
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 681,747
Number of extensions: 29189
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 17
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)