BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029164
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 2 MHPVDTVKTRIQSQAILSGSQNQ-KSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGAT 60
++P+D +TR+ + +Q + + + ++ +DGLRG Y+G V G + A
Sbjct: 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189
Query: 61 YFGFIESTKKWI-EESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSW 119
YFG ++ K + + + + W IA V G Y P + +++RM +Q K
Sbjct: 190 YFGVYDTAKGMLPDPKNVHIIVSW--MIAQTVTAVAGLVSY-PFDTVRRRMMMQSGRK-- 244
Query: 120 GSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVC 179
G+ +M YTG I +++G + + G WS + R + A ++V
Sbjct: 245 GADIM---------------YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL 289
Query: 180 Y 180
Y
Sbjct: 290 Y 290
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 26/168 (15%)
Query: 4 PVDTVKTRIQSQAI---LSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGAT 60
P++ VK +Q Q +S + K I V + G F+RG V T A
Sbjct: 27 PIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86
Query: 61 YFGFIESTKKWI---EESHPSLGGHWAHFIA--GAVGDTLGSFVYVPCEVMKQRMQVQGT 115
F F + K+ + H ++A +A GA G T FVY P + + R+
Sbjct: 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVY-PLDFARTRLAAD-- 143
Query: 116 IKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGY 163
K Q +TG+ + I++ GLRGLY G+
Sbjct: 144 -------------VGKGAAQR--EFTGLGNCITKIFKSDGLRGLYQGF 176
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 37/179 (20%)
Query: 4 PVDTVKTRIQ----SQAILSGSQNQK------SISQMVRSVWAADGLRGFYRGVTPGVTG 53
P+DT K R+Q SQ ++ + + + +I MVR+ +G R Y G+ G+
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT----EGPRSLYNGLVAGLQR 76
Query: 54 SLATGATYFGFIESTKKWIEE--SHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQ 111
++ + G +S K++ + H +G + +AG+ L V P +V+K R Q
Sbjct: 77 QMSFASVRIGLYDSVKQFYTKGSEHAGIG---SRLLAGSTTGALAVAVAQPTDVVKVRFQ 133
Query: 112 VQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARD 170
Q ++ G Y +A +I RE+G+RGL+ G +AR+
Sbjct: 134 AQA--RAGGG----------------RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 174
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%)
Query: 3 HPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYF 62
P D VK R Q+QA G + +S + +++ +G+RG ++G +P V +
Sbjct: 123 QPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182
Query: 63 GFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQR 109
+ K + +++ HF + + + P +V+K R
Sbjct: 183 VTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR 229
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 85 HFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIY 144
F+ + + P + K R+Q+QG +S G + + Y G+
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQG--ESQGLVRTAAS----------AQYRGVL 51
Query: 145 QAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMV 178
++ R +G R LY G + L R + FA + +
Sbjct: 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRI 85
>pdb|1T2J|A Chain A, Crystal Structure Of A Human Vh Domain
Length = 116
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 VTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDT 94
V PG + L+ A+ F F S W+ ++ P G W I+G+ G+T
Sbjct: 12 VQPGGSLRLSCAASGFTFSNSAMSWVRQA-PGKGLEWVSSISGSGGNT 58
>pdb|2WQF|A Chain A, Crystal Structure Of The Nitroreductase Cind From
Lactococcus Lactis In Complex With Fmn
Length = 202
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 109 RMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLA 168
R ++ G ++G+IL ++ V NLQ +Y +W EQG + W+ LA
Sbjct: 86 RAKLDGFKAAFGTILFFEDQAVVKNLQ---EQFALYADNFPVWSEQGSGIISVNVWTALA 142
Query: 169 R 169
Sbjct: 143 E 143
>pdb|3UPC|A Chain A, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|B Chain B, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|C Chain C, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|D Chain D, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|E Chain E, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|F Chain F, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|G Chain G, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|H Chain H, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|I Chain I, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
pdb|3UPC|J Chain J, A General Strategy For The Generation Of Human Antibody
Variable Domains With Increased Aggregation Resistance
Length = 113
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 47 VTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDT 94
V PG + L+ A+ F F + W+ ++ P G W I+G+ G T
Sbjct: 10 VQPGGSLRLSCAASGFTFSDEDMSWVRQA-PGKGLEWVSAISGSGGST 56
>pdb|1RMF|H Chain H, Structures Of A Monoclonal Anti-Icam-1 Antibody R6.5
Fragment At 2.8 Angstroms Resolution
Length = 216
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 47 VTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDT 94
V PGV+ ++ + + FI+ W++ESH + W I+ GDT
Sbjct: 12 VRPGVSVKISCKGSGYTFIDYAIHWVKESH-AKSLEWIGVISAYSGDT 58
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 44 YRGVTPGVTGSLATGATYFGFIESTKKWIEESHP----SLGGHWAHFIAGAVGDTLG 96
YR P +TGSL G +E + +E+ + +LGG WA G V D G
Sbjct: 37 YRAGEPPLTGSLLIGGAGR-VVEPLRAALEKDYDLVGNNLGGRWADSFGGLVFDATG 92
>pdb|4FQJ|H Chain H, Influenza BFLORIDA42006 HEMAGGLUTININ FAB CR8071 COMPLEX
pdb|4FQK|E Chain E, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
pdb|4FQK|H Chain H, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
Length = 234
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 49 PGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDT 94
PG + ++ A+ + F ES W+ ++ P G W +I+G GDT
Sbjct: 14 PGASVRVSCRASGYIFTESGITWVRQA-PGQGLEWMGWISGYSGDT 58
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 44 YRGVTPGVTGSLATGATYFGFIESTKKWIEESHP----SLGGHWAHFIAGAVGDTLG 96
YR P +TGSL G +E + +E+ + +LGG WA G V D G
Sbjct: 45 YRAGEPPLTGSLLIGGAGR-VVEPLRAALEKDYDLVGNNLGGRWADSFGGLVFDATG 100
>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
pdb|3LLS|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
Length = 475
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 44 YRGVTPGVTGSLATGATYFGFIESTKKWIEESHP----SLGGHWAHFIAGAVGDTLG 96
YR P +TGSL G +E + +E+ + +LGG WA G V D G
Sbjct: 58 YRAGEPPLTGSLLIGGAGR-VVEPLRAALEKDYDLVGNNLGGRWADSFGGLVFDATG 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,033,452
Number of Sequences: 62578
Number of extensions: 241951
Number of successful extensions: 785
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 25
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)