Query 029165
Match_columns 198
No_of_seqs 120 out of 240
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 13:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 74.5 1.1 7.7E-05 33.4 3.2 33 63-95 39-75 (137)
2 d1yr0a1 d.108.1.1 (A:4-166) Ph 40.5 23 0.0017 24.0 5.3 61 60-123 4-73 (163)
3 d1s3za_ d.108.1.1 (A:) Aminogl 37.3 21 0.0015 23.7 4.4 57 59-119 4-62 (147)
4 d1yvoa1 d.108.1.1 (A:4-172) Hy 36.3 21 0.0015 24.5 4.5 60 61-122 3-71 (169)
5 d2ozga2 d.108.1.10 (A:8-290) P 36.3 50 0.0037 24.8 7.2 78 58-141 2-99 (283)
6 d1vhsa_ d.108.1.1 (A:) Putativ 32.7 66 0.0048 21.6 9.9 63 59-122 3-72 (165)
7 d1iyka2 d.108.1.2 (A:225-451) 27.7 70 0.0051 24.9 6.6 58 60-119 43-110 (227)
8 d1iica2 d.108.1.2 (A:219-455) 24.8 81 0.0059 24.7 6.5 38 60-97 43-84 (237)
9 d1rxta2 d.108.1.2 (A:219-455) 23.4 25 0.0018 27.2 3.0 58 60-119 43-105 (201)
10 d2rnrb1 b.55.1.9 (B:1-108) TFI 22.8 21 0.0015 25.0 2.2 27 55-81 74-102 (108)
11 d1i12a_ d.108.1.1 (A:) Glucosa 20.2 1.1E+02 0.0079 19.9 6.7 28 58-85 5-32 (157)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=74.51 E-value=1.1 Score=33.40 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHHHHHhhc----cCCCChhhHHHHHHc
Q 029165 63 PKPDDFHGVKILLQTYLD----DTQWDLSGFVDLILA 95 (198)
Q Consensus 63 p~~~DfhgIK~LL~qlf~----~~~~dlseLaDlIi~ 95 (198)
|++-|||-+|++|+-.+. .+.||.|-||.+|=.
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liPk 75 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPK 75 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCS
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCCC
Confidence 555699999999987664 378999998887643
No 2
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=40.53 E-value=23 Score=23.99 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=37.7
Q ss_pred ecCCCCCcHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCcc--eEEEecCCCCCCceEEEEeeeCC
Q 029165 60 FFDPKPDDFHGVKILLQTYL-------DDTQWDLSGFVDLILAQTTVG--TVVKMEGDDDDTPFSIVTALNLG 123 (198)
Q Consensus 60 ffdp~~~DfhgIK~LL~qlf-------~~~~~dlseLaDlIi~Q~~vG--TvIK~~~ded~dvfg~~SvLNL~ 123 (198)
.+...+.|..+|..++.++. ....++..+....+.....-+ .+|-.. ++.+.|++++....
T Consensus 4 IR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~ivG~~~~~~~~ 73 (163)
T d1yr0a1 4 LRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAIL---DGKVAGYASYGDWR 73 (163)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEEE---TTEEEEEEEEEESS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEEE---CCeEEEeecceeec
Confidence 35567789999999987753 234566667666665543222 233222 34688888776644
No 3
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=37.33 E-value=21 Score=23.67 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=36.3
Q ss_pred eecCCCCCcHHHHHHHHHHhhccC--CCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEe
Q 029165 59 VFFDPKPDDFHGVKILLQTYLDDT--QWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTA 119 (198)
Q Consensus 59 effdp~~~DfhgIK~LL~qlf~~~--~~dlseLaDlIi~Q~~vGTvIK~~~ded~dvfg~~Sv 119 (198)
+.+..++.|..++..|.++++... ......+...+... ....+|..++ +.+.|++++
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~~---~~~vG~~~~ 62 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQAD-HLASFIAMAD---GVAIGFADA 62 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHCS-SEEEEEEEET---TEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhCC-CcEEEEEEEC---CEEEEEEEE
Confidence 456778889999999999998653 23345566655543 4344444432 357777664
No 4
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.31 E-value=21 Score=24.53 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=37.3
Q ss_pred cCCCCCcHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCc--ceEEEecCCCCCCceEEEEeeeC
Q 029165 61 FDPKPDDFHGVKILLQTYL-------DDTQWDLSGFVDLILAQTTV--GTVVKMEGDDDDTPFSIVTALNL 122 (198)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf-------~~~~~dlseLaDlIi~Q~~v--GTvIK~~~ded~dvfg~~SvLNL 122 (198)
+...+.|..+|..+++++. +.......++...+..+..- .-+|-.+ .++.+.|++++-..
T Consensus 3 R~a~~~D~~~i~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~vG~~~~~~~ 71 (169)
T d1yvoa1 3 RDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASD--AAGEVLGYASYGDW 71 (169)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSCCSCCCHHHHHHHHHHHHHHTCCEEEEEC--TTCCEEEEEEEEES
T ss_pred ccCcHHHHHHHHHHHHHHHhhcceecccCCCCHHHHHHHHHhhhccCCceEEEEe--cCCCEEEeeccccc
Confidence 4567789999999987754 23455677777766554322 2333333 23568888776544
No 5
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=36.26 E-value=50 Score=24.84 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=47.3
Q ss_pred EeecCCCCCcHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeC---------------
Q 029165 58 FVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNL--------------- 122 (198)
Q Consensus 58 Feffdp~~~DfhgIK~LL~qlf~~~~~dlseLaDlIi~Q~~vGTvIK~~~ded~dvfg~~SvLNL--------------- 122 (198)
|.+...+++|+..|+.|+.+.|.....+....-+-+-.++. -|+..+ +-+.|.++++..
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~~~~~~~~~~~~~~--~v~~~~----~~ivg~~~~~~~~~~~~g~~~~~~~i~ 75 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLENF--RVIYRE----QKVAGGLAILPMGQWWGGQRVPMAGIA 75 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTHHHHHHHHHCGGGE--EEEEET----TEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCcHHHHHHHhcCCCE--EEEEEC----CEEEEEEEEEEeeeeECCeeeeEeeEE
Confidence 77888899999999999999997654444334443333322 233222 235555554433
Q ss_pred -----CccCCchhHHHHHHHHHHh
Q 029165 123 -----GRYKDHKCIKELKEFLLKV 141 (198)
Q Consensus 123 -----~~~k~~~~i~~L~~yLl~~ 141 (198)
..|+.......|.+.+++.
T Consensus 76 ~v~v~p~~rg~G~~~~L~~~~~~~ 99 (283)
T d2ozga2 76 AVGIAPEYRGDGAAIALIQHTLQE 99 (283)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHH
T ss_pred EEEECcccccCChHHHHHHHHHHH
Confidence 3455666677777776643
No 6
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=32.74 E-value=66 Score=21.61 Aligned_cols=63 Identities=6% Similarity=0.057 Sum_probs=42.6
Q ss_pred eecCCCCCcHHHHHHHHHHhhc-------cCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeC
Q 029165 59 VFFDPKPDDFHGVKILLQTYLD-------DTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNL 122 (198)
Q Consensus 59 effdp~~~DfhgIK~LL~qlf~-------~~~~dlseLaDlIi~Q~~vGTvIK~~~ded~dvfg~~SvLNL 122 (198)
.++...+.|...|..+..++.. ....+..++.+.+.....-+...-... +++.+.|++++-+.
T Consensus 3 ~iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ivG~~~~~~~ 72 (165)
T d1vhsa_ 3 TLRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAED-ENGNVAAWISFETF 72 (165)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEEC-TTSCEEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEEe-cCCceEeeeeeeec
Confidence 4566778899999999877543 245667778888777665555554443 34568888876543
No 7
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=27.66 E-value=70 Score=24.95 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=41.6
Q ss_pred ecCCCCCcHHHHHHHHHHhhcc----CCCChhhHHHHHHcCC------CcceEEEecCCCCCCceEEEEe
Q 029165 60 FFDPKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILAQT------TVGTVVKMEGDDDDTPFSIVTA 119 (198)
Q Consensus 60 ffdp~~~DfhgIK~LL~qlf~~----~~~dlseLaDlIi~Q~------~vGTvIK~~~ded~dvfg~~Sv 119 (198)
++.+.+.|...+..||+.|+.+ ..|+-.+++-.++.+. -|-|-|..+ +++.+-.|+|.
T Consensus 43 lR~M~~kDv~~V~~LL~~yl~~f~l~~~F~~eev~Hwflp~~~~~~~~Vi~sYVve~--~~g~ItDF~SF 110 (227)
T d1iyka2 43 LRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVED--ENGIITDYFSY 110 (227)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTSSEEEECCHHHHHHHHHCSCSSSCCSSEEEEEEEC--TTSCEEEEEEE
T ss_pred cccCchhhHHHHHHHHHHHHHcCcceEecCHHHHHHhhcCccccCCCCeEEEEEEEC--CCCcEeEEEEE
Confidence 6778889999999999999854 6799999999999864 244555433 23444444444
No 8
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.84 E-value=81 Score=24.70 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=32.8
Q ss_pred ecCCCCCcHHHHHHHHHHhhcc----CCCChhhHHHHHHcCC
Q 029165 60 FFDPKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILAQT 97 (198)
Q Consensus 60 ffdp~~~DfhgIK~LL~qlf~~----~~~dlseLaDlIi~Q~ 97 (198)
++.+.+.|...+..||+.|+.+ ..|+-.+++-.++.+.
T Consensus 43 lR~M~~kDv~~V~~LL~~yl~~f~l~~~Ft~eev~Hwflp~~ 84 (237)
T d1iica2 43 LRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEE 84 (237)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTSSEEECCCHHHHHHHHSCCT
T ss_pred cccCchhhHHHHHHHHHHHHHhCcceEecCHHHhhheecccc
Confidence 5677889999999999999854 6899999999999764
No 9
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.45 E-value=25 Score=27.20 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=42.0
Q ss_pred ecCCCCCcHHHHHHHHHHhhcc----CCCChhhHHHHHHcCCC-cceEEEecCCCCCCceEEEEe
Q 029165 60 FFDPKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILAQTT-VGTVVKMEGDDDDTPFSIVTA 119 (198)
Q Consensus 60 ffdp~~~DfhgIK~LL~qlf~~----~~~dlseLaDlIi~Q~~-vGTvIK~~~ded~dvfg~~Sv 119 (198)
++.+.+.|...+..||+.|+.+ ..|+-.+++-.++.+.. |-|-|..+ +++.+-+|+|.
T Consensus 43 lR~m~~kDv~~v~~Ll~~yl~~f~l~~~f~~eev~Hwflp~~~Vi~syVve~--~~g~itDf~SF 105 (201)
T d1rxta2 43 LRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVEN--ANGEVTDFLSF 105 (201)
T ss_dssp EEECCGGGSHHHHHHHHHHSTTSSBCCCCCTTTTTTSSSCCSSSEEEEEECC--SSSCCCCEEEE
T ss_pred cccCcHhhHHHHHHHHHHHHhcCceEEecCHHHhheeeccCCCEEEEEEEEC--CCCcEeeEEEE
Confidence 6778889999999999999854 67888888888887655 55666533 22345555554
No 10
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.85 E-value=21 Score=24.97 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=21.8
Q ss_pred EEEEeecCCCCC--cHHHHHHHHHHhhcc
Q 029165 55 QADFVFFDPKPD--DFHGVKILLQTYLDD 81 (198)
Q Consensus 55 ~VDFeffdp~~~--DfhgIK~LL~qlf~~ 81 (198)
..-|.|-++..- |.+.||.+|+|++..
T Consensus 74 s~~F~Ftn~~~~~~~Rd~iK~~Lq~~i~~ 102 (108)
T d2rnrb1 74 TTNFHFSNESTAVKERDAVKDLLQQLLPK 102 (108)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECChHHHHHHHHHHHHHHHHHHHH
Confidence 378888887653 889999999999854
No 11
>d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.20 E-value=1.1e+02 Score=19.86 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=21.1
Q ss_pred EeecCCCCCcHHHHHHHHHHhhccCCCC
Q 029165 58 FVFFDPKPDDFHGVKILLQTYLDDTQWD 85 (198)
Q Consensus 58 Feffdp~~~DfhgIK~LL~qlf~~~~~d 85 (198)
|..+...+.|+..|..+++.+.....+.
T Consensus 5 ~~IR~~~~~D~~~i~~~~~~~~~~~~~~ 32 (157)
T d1i12a_ 5 FYIRRMEEGDLEQVTETLKVLTTVGTIT 32 (157)
T ss_dssp EEEEECCGGGHHHHHHHHTTTSCCCCCC
T ss_pred cEEEeCCHHHHHHHHHHHHHHhhccccC
Confidence 6777888899999999998765443333
Done!