Query 029167
Match_columns 198
No_of_seqs 113 out of 1035
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03381 agmatine_aguB N-carb 100.0 2.1E-37 4.5E-42 250.9 18.1 173 9-181 1-175 (279)
2 PLN02747 N-carbamolyputrescine 100.0 1.4E-36 3E-41 248.3 17.7 178 4-181 2-181 (296)
3 cd07568 ML_beta-AS_like mammal 100.0 1.9E-36 4.2E-41 246.3 17.9 175 7-181 2-187 (287)
4 cd07587 ML_beta-AS mammalian-l 100.0 4.1E-36 8.8E-41 250.9 18.2 175 7-181 62-250 (363)
5 PLN00202 beta-ureidopropionase 100.0 2.5E-35 5.4E-40 248.8 17.9 174 6-180 84-270 (405)
6 PF00795 CN_hydrolase: Carbon- 100.0 1.7E-35 3.8E-40 226.0 14.4 169 10-179 1-184 (186)
7 PRK10438 C-N hydrolase family 100.0 8.7E-35 1.9E-39 233.1 17.2 163 7-182 2-166 (256)
8 cd07576 R-amidase_like Pseudom 100.0 1.4E-34 3E-39 231.3 17.3 163 10-180 1-166 (254)
9 cd07583 nitrilase_5 Uncharacte 100.0 1.2E-34 2.6E-39 231.7 16.9 163 10-180 1-167 (253)
10 cd07573 CPA N-carbamoylputresc 100.0 1.6E-34 3.4E-39 234.7 17.7 173 9-181 1-176 (284)
11 cd07564 nitrilases_CHs Nitrila 100.0 1.6E-34 3.6E-39 236.2 17.7 165 9-178 1-179 (297)
12 cd07579 nitrilase_1_R2 Second 100.0 1.3E-34 2.8E-39 234.8 16.8 158 10-180 1-160 (279)
13 cd07569 DCase N-carbamyl-D-ami 100.0 3.1E-34 6.8E-39 235.0 18.3 171 7-178 2-193 (302)
14 PLN02504 nitrilase 100.0 3.3E-34 7.1E-39 238.3 18.5 169 7-180 23-210 (346)
15 cd07584 nitrilase_6 Uncharacte 100.0 2.6E-34 5.5E-39 230.4 16.5 165 10-180 1-170 (258)
16 PLN02798 nitrilase 100.0 8.2E-34 1.8E-38 230.9 18.3 172 4-181 6-189 (286)
17 cd07570 GAT_Gln-NAD-synth Glut 100.0 2.3E-34 5E-39 231.0 14.0 164 10-180 1-170 (261)
18 cd07572 nit Nit1, Nit 2, and r 100.0 7.7E-34 1.7E-38 228.3 16.7 169 10-182 1-179 (265)
19 cd07575 Xc-1258_like Xanthomon 100.0 1.6E-33 3.5E-38 225.3 17.7 163 9-182 1-165 (252)
20 cd07578 nitrilase_1_R1 First n 100.0 1.3E-33 2.9E-38 226.4 17.2 167 9-182 1-173 (258)
21 cd07580 nitrilase_2 Uncharacte 100.0 1.5E-33 3.2E-38 227.3 16.5 165 10-180 1-168 (268)
22 cd07585 nitrilase_7 Uncharacte 100.0 1.5E-33 3.2E-38 226.4 16.0 162 10-181 1-165 (261)
23 cd07581 nitrilase_3 Uncharacte 100.0 3E-33 6.5E-38 223.8 17.2 167 11-180 1-171 (255)
24 cd07567 biotinidase_like bioti 100.0 1.6E-33 3.6E-38 229.5 14.8 169 9-182 1-208 (299)
25 cd07577 Ph0642_like Pyrococcus 100.0 3.7E-33 8E-38 223.9 16.2 162 10-180 1-165 (259)
26 cd07586 nitrilase_8 Uncharacte 100.0 7E-33 1.5E-37 223.3 15.4 163 10-180 1-167 (269)
27 COG0388 Predicted amidohydrola 100.0 1.4E-32 2.9E-37 222.4 16.8 170 8-181 2-175 (274)
28 cd07197 nitrilase Nitrilase su 100.0 2.1E-32 4.5E-37 218.1 17.2 166 11-182 1-169 (253)
29 cd07565 aliphatic_amidase alip 100.0 3.3E-32 7.2E-37 221.9 17.6 164 9-180 1-177 (291)
30 PRK02628 nadE NAD synthetase; 100.0 2E-32 4.4E-37 244.6 17.6 171 7-183 11-206 (679)
31 cd07571 ALP_N-acyl_transferase 100.0 2E-32 4.3E-37 221.0 14.8 157 9-180 1-184 (270)
32 cd07574 nitrilase_Rim1_like Un 100.0 2.2E-32 4.7E-37 221.7 14.1 168 9-181 1-178 (280)
33 PRK13981 NAD synthetase; Provi 100.0 8.2E-32 1.8E-36 236.1 17.3 164 9-182 1-171 (540)
34 PLN02339 NAD+ synthase (glutam 100.0 3.2E-32 6.9E-37 243.2 14.9 174 7-184 2-203 (700)
35 cd07566 ScNTA1_like Saccharomy 100.0 1.1E-31 2.4E-36 218.9 16.6 171 10-181 1-202 (295)
36 cd07582 nitrilase_4 Uncharacte 100.0 4E-31 8.8E-36 215.9 16.4 170 10-180 2-197 (294)
37 PRK13287 amiF formamidase; Pro 100.0 3E-30 6.6E-35 213.6 18.5 167 6-180 11-189 (333)
38 PRK13286 amiE acylamide amidoh 100.0 2.3E-30 5E-35 214.8 17.1 166 6-180 10-190 (345)
39 TIGR00546 lnt apolipoprotein N 100.0 2.9E-29 6.3E-34 212.3 13.3 159 7-180 158-344 (391)
40 KOG0808 Carbon-nitrogen hydrol 99.9 3.9E-27 8.4E-32 182.4 14.2 172 8-179 73-258 (387)
41 KOG0807 Carbon-nitrogen hydrol 99.9 1.2E-27 2.6E-32 183.2 8.8 166 9-178 16-192 (295)
42 PRK00302 lnt apolipoprotein N- 99.9 3.8E-27 8.2E-32 205.3 12.9 159 7-180 218-404 (505)
43 PRK12291 apolipoprotein N-acyl 99.9 1.6E-26 3.4E-31 196.4 14.9 152 9-181 195-372 (418)
44 KOG0806 Carbon-nitrogen hydrol 99.9 6E-27 1.3E-31 186.5 9.9 172 7-182 12-198 (298)
45 KOG0805 Carbon-nitrogen hydrol 99.9 8E-23 1.7E-27 157.4 13.6 159 5-169 14-190 (337)
46 PRK13825 conjugal transfer pro 99.9 2.3E-22 4.9E-27 169.1 14.7 152 9-178 186-351 (388)
47 COG0815 Lnt Apolipoprotein N-a 99.9 1.7E-21 3.8E-26 168.9 12.7 162 7-183 226-421 (518)
48 KOG2303 Predicted NAD synthase 99.6 9.2E-17 2E-21 134.6 4.3 178 5-189 1-209 (706)
49 cd07565 aliphatic_amidase alip 90.3 3.4 7.4E-05 33.7 9.5 70 32-118 161-232 (291)
50 cd07576 R-amidase_like Pseudom 88.7 4.9 0.00011 31.6 9.1 69 33-118 151-221 (254)
51 cd07584 nitrilase_6 Uncharacte 86.4 7.3 0.00016 30.8 8.9 70 32-118 154-225 (258)
52 cd07585 nitrilase_7 Uncharacte 85.6 7.6 0.00016 30.7 8.6 73 33-118 149-223 (261)
53 PRK13286 amiE acylamide amidoh 85.3 9.6 0.00021 32.0 9.3 70 32-118 174-245 (345)
54 PRK15018 1-acyl-sn-glycerol-3- 84.1 5 0.00011 32.0 6.8 58 20-92 119-176 (245)
55 cd07583 nitrilase_5 Uncharacte 82.7 8.1 0.00018 30.4 7.6 71 32-119 151-223 (253)
56 cd07197 nitrilase Nitrilase su 82.3 10 0.00022 29.6 8.0 69 33-118 152-222 (253)
57 cd07570 GAT_Gln-NAD-synth Glut 82.2 15 0.00034 28.9 9.1 70 34-118 156-227 (261)
58 cd07567 biotinidase_like bioti 81.9 9.4 0.0002 31.4 7.8 70 33-119 189-260 (299)
59 cd07581 nitrilase_3 Uncharacte 80.9 14 0.0003 29.1 8.4 71 32-119 155-225 (255)
60 cd07580 nitrilase_2 Uncharacte 80.4 24 0.00053 28.0 9.7 74 34-118 154-229 (268)
61 cd07572 nit Nit1, Nit 2, and r 80.3 8.3 0.00018 30.5 6.9 70 32-117 161-233 (265)
62 cd07587 ML_beta-AS mammalian-l 79.6 11 0.00025 31.8 7.8 65 36-116 237-319 (363)
63 cd07568 ML_beta-AS_like mammal 78.5 21 0.00045 28.7 8.8 70 33-118 171-245 (287)
64 TIGR00530 AGP_acyltrn 1-acyl-s 78.4 10 0.00022 26.2 6.2 52 26-92 75-126 (130)
65 PF02630 SCO1-SenC: SCO1/SenC; 78.2 26 0.00056 26.2 8.6 107 11-120 54-172 (174)
66 cd07586 nitrilase_8 Uncharacte 76.7 24 0.00052 28.0 8.6 73 36-118 155-229 (269)
67 TIGR03381 agmatine_aguB N-carb 76.5 31 0.00068 27.4 9.3 76 33-118 159-240 (279)
68 cd07582 nitrilase_4 Uncharacte 76.4 28 0.0006 28.3 9.0 70 33-118 182-257 (294)
69 PRK13210 putative L-xylulose 5 75.8 21 0.00046 28.5 8.1 62 23-92 90-151 (284)
70 COG0388 Predicted amidohydrola 75.4 17 0.00037 29.0 7.5 66 37-118 163-231 (274)
71 TIGR00542 hxl6Piso_put hexulos 74.7 24 0.00052 28.3 8.1 62 23-92 90-151 (279)
72 cd07577 Ph0642_like Pyrococcus 74.6 31 0.00066 27.3 8.7 66 33-118 150-221 (259)
73 cd07573 CPA N-carbamoylputresc 73.9 35 0.00076 27.3 9.0 79 32-118 159-243 (284)
74 PRK09856 fructoselysine 3-epim 72.4 30 0.00065 27.5 8.2 63 22-92 85-147 (275)
75 PLN02747 N-carbamolyputrescine 72.3 42 0.00092 27.1 9.1 76 33-119 165-251 (296)
76 cd07579 nitrilase_1_R2 Second 72.2 21 0.00046 28.8 7.3 84 33-116 145-230 (279)
77 cd07990 LPLAT_LCLAT1-like Lyso 72.1 11 0.00023 28.6 5.3 50 24-92 86-137 (193)
78 PF01261 AP_endonuc_2: Xylose 72.1 29 0.00062 25.9 7.7 64 23-92 67-130 (213)
79 PRK10438 C-N hydrolase family 70.8 25 0.00055 27.9 7.4 64 39-119 154-220 (256)
80 PLN02798 nitrilase 70.4 33 0.00071 27.7 8.0 70 33-118 172-245 (286)
81 PF01553 Acyltransferase: Acyl 70.1 17 0.00037 25.1 5.6 27 26-52 77-103 (132)
82 PRK13209 L-xylulose 5-phosphat 69.8 37 0.00081 27.1 8.2 63 22-92 94-156 (283)
83 PLN02504 nitrilase 69.5 29 0.00063 29.1 7.7 65 33-117 195-281 (346)
84 PLN00202 beta-ureidopropionase 69.5 32 0.0007 29.6 8.1 65 37-117 259-341 (405)
85 smart00563 PlsC Phosphate acyl 68.9 17 0.00036 24.3 5.3 52 24-91 60-111 (118)
86 PRK13981 NAD synthetase; Provi 66.9 47 0.001 29.6 8.9 72 32-118 153-226 (540)
87 cd07564 nitrilases_CHs Nitrila 66.4 36 0.00078 27.7 7.5 72 32-117 165-253 (297)
88 cd07578 nitrilase_1_R1 First n 65.3 57 0.0012 25.7 8.3 66 33-117 155-222 (258)
89 COG1066 Sms Predicted ATP-depe 64.8 52 0.0011 28.6 8.1 38 73-110 196-242 (456)
90 PRK13287 amiF formamidase; Pro 64.8 74 0.0016 26.5 9.2 70 32-119 173-245 (333)
91 cd07993 LPLAT_DHAPAT-like Lyso 62.6 38 0.00082 25.9 6.7 27 27-53 88-114 (205)
92 smart00481 POLIIIAc DNA polyme 62.0 34 0.00073 20.9 5.8 47 28-95 16-62 (67)
93 COG1131 CcmA ABC-type multidru 61.0 24 0.00053 28.8 5.6 70 35-119 149-219 (293)
94 cd07988 LPLAT_ABO13168-like Ly 60.9 28 0.0006 25.7 5.4 35 40-92 95-129 (163)
95 KOG2792 Putative cytochrome C 60.6 35 0.00076 27.6 6.1 97 23-123 156-262 (280)
96 PRK12677 xylose isomerase; Pro 60.3 89 0.0019 26.7 9.0 63 24-92 111-177 (384)
97 KOG0807 Carbon-nitrogen hydrol 59.6 15 0.00033 29.3 3.9 71 36-123 182-256 (295)
98 cd07571 ALP_N-acyl_transferase 58.8 67 0.0015 25.7 7.7 68 32-119 168-235 (270)
99 cd07986 LPLAT_ACT14924-like Ly 58.7 31 0.00067 26.5 5.5 59 24-92 83-141 (210)
100 cd00019 AP2Ec AP endonuclease 57.6 57 0.0012 26.0 7.2 62 22-92 80-141 (279)
101 cd01821 Rhamnogalacturan_acety 56.9 57 0.0012 24.4 6.7 63 21-91 88-150 (198)
102 COG1225 Bcp Peroxiredoxin [Pos 54.7 23 0.0005 26.3 4.0 52 73-124 72-141 (157)
103 PF13342 Toprim_Crpt: C-termin 54.0 33 0.00072 21.1 4.0 41 76-117 18-58 (62)
104 cd07569 DCase N-carbamyl-D-ami 53.7 1.1E+02 0.0023 24.9 8.3 40 79-118 219-260 (302)
105 cd01822 Lysophospholipase_L1_l 53.0 58 0.0013 23.6 6.1 58 21-91 82-139 (177)
106 cd03293 ABC_NrtD_SsuB_transpor 52.3 72 0.0016 24.4 6.8 46 74-119 169-216 (220)
107 PF14488 DUF4434: Domain of un 51.4 72 0.0016 23.8 6.3 69 26-96 19-87 (166)
108 cd07574 nitrilase_Rim1_like Un 51.1 1.1E+02 0.0024 24.3 7.8 64 33-112 162-231 (280)
109 cd02968 SCO SCO (an acronym fo 50.4 63 0.0014 22.5 5.7 17 104-120 125-141 (142)
110 PLN02901 1-acyl-sn-glycerol-3- 50.1 73 0.0016 24.5 6.4 55 23-93 106-160 (214)
111 PF08821 CGGC: CGGC domain; I 49.4 83 0.0018 21.7 5.9 55 26-94 51-106 (107)
112 PTZ00261 acyltransferase; Prov 49.3 28 0.0006 29.5 4.0 53 25-91 200-252 (355)
113 PRK11629 lolD lipoprotein tran 48.8 69 0.0015 24.8 6.2 45 74-119 183-227 (233)
114 COG1120 FepC ABC-type cobalami 48.6 54 0.0012 26.5 5.5 75 28-117 144-219 (258)
115 COG4175 ProV ABC-type proline/ 47.6 68 0.0015 27.1 6.0 70 34-118 176-246 (386)
116 PRK08392 hypothetical protein; 47.6 54 0.0012 25.3 5.3 56 27-96 14-69 (215)
117 COG2100 Predicted Fe-S oxidore 45.9 53 0.0012 27.6 5.1 48 22-87 237-284 (414)
118 TIGR02314 ABC_MetN D-methionin 45.8 61 0.0013 27.2 5.7 69 34-117 152-221 (343)
119 TIGR03864 PQQ_ABC_ATP ABC tran 45.7 1.2E+02 0.0026 23.5 7.1 67 36-117 146-212 (236)
120 PF10087 DUF2325: Uncharacteri 45.6 46 0.001 22.1 4.1 21 73-93 61-81 (97)
121 cd00950 DHDPS Dihydrodipicolin 45.4 53 0.0011 26.5 5.1 51 25-92 80-131 (284)
122 smart00642 Aamy Alpha-amylase 45.1 1E+02 0.0022 22.9 6.3 72 26-97 18-93 (166)
123 COG1121 ZnuC ABC-type Mn/Zn tr 45.1 70 0.0015 25.8 5.6 66 30-110 147-213 (254)
124 TIGR00674 dapA dihydrodipicoli 43.4 62 0.0013 26.2 5.3 55 24-95 77-133 (285)
125 TIGR01184 ntrCD nitrate transp 43.4 85 0.0018 24.3 5.9 66 36-116 128-194 (230)
126 PRK09997 hydroxypyruvate isome 43.0 1.6E+02 0.0036 23.1 7.7 61 22-92 80-142 (258)
127 KOG0806 Carbon-nitrogen hydrol 43.0 33 0.00071 28.3 3.5 29 98-126 123-151 (298)
128 cd07992 LPLAT_AAK14816-like Ly 43.0 40 0.00086 25.6 3.9 25 28-52 98-122 (203)
129 cd03297 ABC_ModC_molybdenum_tr 42.5 85 0.0018 23.9 5.7 42 74-116 169-211 (214)
130 COG4586 ABC-type uncharacteriz 42.1 1.2E+02 0.0026 25.1 6.5 75 28-117 162-237 (325)
131 cd05562 Peptidases_S53_like Pe 42.0 1.4E+02 0.003 24.1 7.1 54 26-93 76-129 (275)
132 cd00952 CHBPH_aldolase Trans-o 41.5 73 0.0016 26.2 5.4 55 24-95 87-144 (309)
133 TIGR02211 LolD_lipo_ex lipopro 41.1 90 0.0019 23.8 5.7 42 74-116 179-220 (221)
134 TIGR03234 OH-pyruv-isom hydrox 40.3 1.8E+02 0.0039 22.7 7.8 61 24-92 81-141 (254)
135 cd08362 BphC5-RrK37_N_like N-t 40.1 1.1E+02 0.0024 20.3 5.5 46 74-119 70-115 (120)
136 cd03298 ABC_ThiQ_thiamine_tran 39.9 1.1E+02 0.0024 23.1 6.0 42 74-116 166-208 (211)
137 cd07491 Peptidases_S8_7 Peptid 39.7 1.4E+02 0.003 23.7 6.6 58 25-95 87-144 (247)
138 cd03256 ABC_PhnC_transporter A 39.6 1E+02 0.0022 23.8 5.9 42 74-116 182-224 (241)
139 PF00701 DHDPS: Dihydrodipicol 38.7 92 0.002 25.2 5.6 54 25-95 81-136 (289)
140 COG3638 ABC-type phosphate/pho 38.7 82 0.0018 25.3 5.0 70 32-116 157-227 (258)
141 PRK13634 cbiO cobalt transport 38.5 89 0.0019 25.3 5.5 43 74-117 183-226 (290)
142 TIGR03569 NeuB_NnaB N-acetylne 38.3 1.5E+02 0.0032 24.9 6.8 74 20-96 9-98 (329)
143 cd07254 Glo_EDI_BRP_like_20 Th 38.3 1.2E+02 0.0026 20.2 5.5 47 74-120 70-116 (120)
144 cd07991 LPLAT_LPCAT1-like Lyso 38.2 49 0.0011 25.4 3.8 14 39-52 96-109 (211)
145 cd03259 ABC_Carb_Solutes_like 38.2 1.2E+02 0.0026 23.0 5.9 42 74-116 168-210 (213)
146 PRK14014 putative acyltransfer 38.0 43 0.00094 27.5 3.6 26 26-51 160-185 (301)
147 PRK13650 cbiO cobalt transport 37.9 97 0.0021 24.9 5.6 67 36-117 154-220 (279)
148 cd06551 LPLAT Lysophospholipid 37.9 1.6E+02 0.0035 21.5 7.5 57 26-97 87-144 (187)
149 cd03265 ABC_DrrA DrrA is the A 37.8 1.2E+02 0.0027 23.1 6.0 42 74-116 169-211 (220)
150 PRK10528 multifunctional acyl- 37.7 1.2E+02 0.0027 22.6 5.9 69 10-91 73-146 (191)
151 cd03255 ABC_MJ0796_Lo1CDE_FtsE 37.6 1.2E+02 0.0026 23.1 5.9 40 74-114 178-217 (218)
152 KOG1505 Lysophosphatidic acid 37.5 46 0.001 28.1 3.7 27 23-50 135-161 (346)
153 TIGR00256 D-tyrosyl-tRNA(Tyr) 37.5 29 0.00063 25.4 2.2 58 36-93 66-123 (145)
154 PRK06512 thiamine-phosphate py 37.5 2E+02 0.0043 22.5 7.9 65 8-93 12-77 (221)
155 PRK13633 cobalt transporter AT 37.0 1.4E+02 0.0031 23.9 6.4 43 74-117 182-224 (280)
156 COG4598 HisP ABC-type histidin 36.7 1.2E+02 0.0026 23.6 5.4 73 28-115 158-230 (256)
157 PRK07534 methionine synthase I 36.6 2.6E+02 0.0055 23.5 8.1 58 22-100 126-183 (336)
158 cd03257 ABC_NikE_OppD_transpor 36.3 1.2E+02 0.0026 23.1 5.8 42 74-116 183-225 (228)
159 TIGR02631 xylA_Arthro xylose i 36.1 2.8E+02 0.006 23.7 9.5 64 23-92 111-178 (382)
160 PF02126 PTE: Phosphotriestera 36.1 1.6E+02 0.0034 24.4 6.5 52 22-93 33-84 (308)
161 COG1135 AbcC ABC-type metal io 35.9 91 0.002 26.1 5.0 72 32-118 151-223 (339)
162 cd00465 URO-D_CIMS_like The UR 35.9 2E+02 0.0043 23.2 7.2 27 28-54 145-171 (306)
163 PRK08633 2-acyl-glycerophospho 35.9 1E+02 0.0022 29.9 6.2 50 28-92 499-548 (1146)
164 cd03261 ABC_Org_Solvent_Resist 35.7 1.5E+02 0.0032 22.9 6.2 43 74-117 174-217 (235)
165 PRK03170 dihydrodipicolinate s 35.6 1E+02 0.0022 25.0 5.4 55 24-95 80-136 (292)
166 PRK13640 cbiO cobalt transport 35.4 1.1E+02 0.0025 24.5 5.7 67 36-117 157-223 (282)
167 cd07388 MPP_Tt1561 Thermus the 35.2 48 0.001 26.1 3.3 34 8-46 4-37 (224)
168 PF10042 DUF2278: Uncharacteri 35.2 71 0.0015 24.9 4.1 34 20-53 115-148 (206)
169 PLN02399 phospholipid hydroper 34.9 2.3E+02 0.005 22.5 7.9 26 22-47 114-139 (236)
170 COG0708 XthA Exonuclease III [ 34.5 45 0.00098 27.0 3.0 32 20-51 6-37 (261)
171 PRK10584 putative ABC transpor 34.5 1.3E+02 0.0027 23.2 5.6 42 74-116 184-225 (228)
172 cd03465 URO-D_like The URO-D _ 34.5 2.5E+02 0.0055 22.8 7.7 54 30-90 171-224 (330)
173 cd03012 TlpA_like_DipZ_like Tl 34.5 1.5E+02 0.0033 20.3 7.0 79 22-119 38-122 (126)
174 PRK13648 cbiO cobalt transport 34.4 1.8E+02 0.0039 23.1 6.6 42 74-116 180-221 (269)
175 cd03296 ABC_CysA_sulfate_impor 34.3 1.5E+02 0.0032 23.1 6.0 67 36-117 150-217 (239)
176 PRK13635 cbiO cobalt transport 34.1 1.3E+02 0.0027 24.3 5.7 66 36-116 154-219 (279)
177 cd03258 ABC_MetN_methionine_tr 33.8 1.6E+02 0.0034 22.7 6.1 66 36-116 154-220 (233)
178 PF13788 DUF4180: Domain of un 33.7 1.7E+02 0.0036 20.5 7.9 66 8-90 5-72 (113)
179 PF09391 DUF2000: Protein of u 33.5 46 0.001 23.9 2.7 45 8-53 46-90 (133)
180 PRK06740 histidinol-phosphatas 33.2 1.9E+02 0.004 24.2 6.6 67 28-96 62-148 (331)
181 CHL00200 trpA tryptophan synth 33.1 1.3E+02 0.0029 24.2 5.6 42 29-92 108-149 (263)
182 cd07983 LPLAT_DUF374-like Lyso 33.0 1.2E+02 0.0026 22.5 5.1 45 33-95 90-134 (189)
183 TIGR02982 heterocyst_DevA ABC 32.6 1.3E+02 0.0029 22.9 5.4 65 36-115 155-219 (220)
184 TIGR02315 ABC_phnC phosphonate 32.5 1.8E+02 0.0038 22.6 6.2 42 74-116 183-225 (243)
185 PRK13642 cbiO cobalt transport 32.4 1.5E+02 0.0033 23.7 5.9 67 36-117 154-220 (277)
186 PRK10247 putative ABC transpor 32.4 1.4E+02 0.003 23.0 5.5 40 74-113 175-214 (225)
187 PF10566 Glyco_hydro_97: Glyco 32.4 1.9E+02 0.004 23.6 6.3 63 24-92 29-91 (273)
188 PRK13632 cbiO cobalt transport 32.1 2.2E+02 0.0048 22.6 6.8 66 36-116 156-221 (271)
189 PRK13652 cbiO cobalt transport 32.1 1.7E+02 0.0036 23.5 6.1 66 36-116 151-217 (277)
190 cd03301 ABC_MalK_N The N-termi 32.0 1.5E+02 0.0033 22.4 5.7 42 74-116 168-210 (213)
191 PRK10851 sulfate/thiosulfate t 31.9 1.4E+02 0.0029 25.2 5.7 70 33-117 147-217 (353)
192 PRK05273 D-tyrosyl-tRNA(Tyr) d 31.9 44 0.00096 24.5 2.4 58 36-93 66-123 (147)
193 PRK10253 iron-enterobactin tra 31.7 1.5E+02 0.0033 23.5 5.7 68 35-117 156-224 (265)
194 PRK11153 metN DL-methionine tr 31.6 1.4E+02 0.003 24.9 5.7 67 36-117 154-221 (343)
195 cd07945 DRE_TIM_CMS Leptospira 31.6 2.1E+02 0.0046 23.2 6.6 35 20-54 108-142 (280)
196 cd00954 NAL N-Acetylneuraminic 31.2 1.5E+02 0.0032 24.1 5.6 52 24-92 80-133 (288)
197 PF02449 Glyco_hydro_42: Beta- 31.1 85 0.0018 26.5 4.4 58 28-95 11-68 (374)
198 TIGR01277 thiQ thiamine ABC tr 31.0 2.2E+02 0.0047 21.6 6.4 42 74-116 166-208 (213)
199 PRK09989 hypothetical protein; 31.0 2.6E+02 0.0057 21.9 7.2 62 22-92 80-142 (258)
200 cd07266 HPCD_N_class_II N-term 30.8 1.4E+02 0.003 19.9 4.8 45 74-119 72-116 (121)
201 PTZ00253 tryparedoxin peroxida 30.8 1.1E+02 0.0023 23.3 4.6 35 78-118 108-142 (199)
202 PRK14862 rimO ribosomal protei 30.6 2E+02 0.0044 25.0 6.7 73 7-96 6-84 (440)
203 COG1126 GlnQ ABC-type polar am 30.6 1.3E+02 0.0028 24.0 4.8 80 28-123 142-222 (240)
204 PRK00302 lnt apolipoprotein N- 30.5 2.4E+02 0.0051 24.9 7.2 36 76-118 419-454 (505)
205 COG0204 PlsC 1-acyl-sn-glycero 30.4 67 0.0014 24.9 3.4 27 27-53 125-151 (255)
206 PRK15112 antimicrobial peptide 30.1 1.4E+02 0.0031 23.7 5.3 42 74-116 187-229 (267)
207 PRK09984 phosphonate/organopho 30.0 1.9E+02 0.0041 22.8 6.0 42 74-116 190-232 (262)
208 PRK11701 phnK phosphonate C-P 29.8 1.7E+02 0.0037 23.0 5.7 42 74-116 189-231 (258)
209 PF14419 SPOUT_MTase_2: AF2226 29.7 1.2E+02 0.0025 22.7 4.2 45 10-55 1-47 (173)
210 COG1082 IolE Sugar phosphate i 29.6 2.5E+02 0.0054 22.0 6.7 66 23-94 80-146 (274)
211 cd00408 DHDPS-like Dihydrodipi 29.5 1.3E+02 0.0028 24.1 5.1 54 25-95 77-132 (281)
212 PRK13636 cbiO cobalt transport 29.4 1.7E+02 0.0037 23.5 5.7 66 36-116 155-221 (283)
213 cd00717 URO-D Uroporphyrinogen 29.4 2.6E+02 0.0056 23.0 7.0 48 30-86 180-227 (335)
214 COG4555 NatA ABC-type Na+ tran 29.4 93 0.002 24.6 3.8 69 34-118 145-214 (245)
215 TIGR02142 modC_ABC molybdenum 29.1 1.8E+02 0.0039 24.4 5.9 43 74-117 169-212 (354)
216 TIGR03415 ABC_choXWV_ATP choli 29.0 1.5E+02 0.0033 25.3 5.6 67 36-117 178-245 (382)
217 TIGR03005 ectoine_ehuA ectoine 29.0 2E+02 0.0043 22.5 5.9 42 74-116 184-226 (252)
218 TIGR02770 nickel_nikD nickel i 28.9 1.8E+02 0.0039 22.4 5.6 43 74-117 163-206 (230)
219 KOG2863 RNA lariat debranching 28.9 3E+02 0.0065 23.7 6.9 125 9-158 1-125 (456)
220 PRK13646 cbiO cobalt transport 28.8 1.6E+02 0.0035 23.7 5.5 43 74-117 183-226 (286)
221 PRK13637 cbiO cobalt transport 28.7 1.7E+02 0.0037 23.6 5.6 42 74-116 182-224 (287)
222 TIGR01766 tspaseT_teng_C trans 28.7 1.6E+02 0.0034 18.6 6.4 61 27-92 11-75 (82)
223 PRK09437 bcp thioredoxin-depen 28.7 81 0.0018 22.5 3.4 26 22-47 46-71 (154)
224 PRK11831 putative ABC transpor 28.7 2E+02 0.0043 22.9 6.0 67 36-117 157-224 (269)
225 cd03295 ABC_OpuCA_Osmoprotecti 28.6 2.1E+02 0.0046 22.2 6.1 43 74-117 173-216 (242)
226 cd04501 SGNH_hydrolase_like_4 28.6 2.3E+02 0.005 20.5 8.1 78 9-91 60-142 (183)
227 TIGR02717 AcCoA-syn-alpha acet 28.5 3.6E+02 0.0077 23.5 7.8 53 26-93 74-127 (447)
228 PRK10771 thiQ thiamine transpo 28.2 2.1E+02 0.0046 22.0 5.9 66 36-116 143-209 (232)
229 PLN02833 glycerol acyltransfer 28.1 96 0.0021 26.5 4.1 26 27-52 222-249 (376)
230 COG1137 YhbG ABC-type (unclass 28.0 3.1E+02 0.0066 21.7 7.0 70 33-118 150-220 (243)
231 cd03267 ABC_NatA_like Similar 28.0 1.8E+02 0.0038 22.6 5.4 42 74-116 191-233 (236)
232 TIGR00262 trpA tryptophan synt 27.8 2E+02 0.0044 23.0 5.8 25 155-179 201-227 (256)
233 cd03299 ABC_ModC_like Archeal 27.8 2.2E+02 0.0047 22.1 5.9 43 74-117 167-210 (235)
234 TIGR00968 3a0106s01 sulfate AB 27.8 2.1E+02 0.0046 22.2 5.9 42 74-116 168-210 (237)
235 PF01081 Aldolase: KDPG and KH 27.8 1.8E+02 0.0039 22.4 5.3 39 32-96 72-110 (196)
236 TIGR01187 potA spermidine/putr 27.8 1.8E+02 0.0038 24.1 5.7 67 36-117 114-181 (325)
237 PRK14250 phosphate ABC transpo 27.7 2.4E+02 0.0051 21.9 6.2 42 74-116 169-211 (241)
238 PF02811 PHP: PHP domain; Int 27.6 2E+02 0.0043 20.6 5.4 48 28-96 17-64 (175)
239 TIGR02323 CP_lyasePhnK phospho 27.5 2.1E+02 0.0046 22.3 5.9 43 74-117 186-229 (253)
240 PRK11300 livG leucine/isoleuci 27.3 2E+02 0.0044 22.4 5.8 66 36-116 167-233 (255)
241 cd01832 SGNH_hydrolase_like_1 27.2 2.5E+02 0.0053 20.4 7.9 65 21-92 86-150 (185)
242 cd03214 ABC_Iron-Siderophores_ 27.1 2.3E+02 0.0051 20.8 5.8 69 33-116 108-177 (180)
243 PF00202 Aminotran_3: Aminotra 27.1 3.1E+02 0.0068 22.7 7.1 54 25-92 162-216 (339)
244 PRK11650 ugpC glycerol-3-phosp 27.0 1.8E+02 0.0039 24.5 5.6 68 35-117 147-215 (356)
245 cd07476 Peptidases_S8_thiazoli 27.0 3.3E+02 0.0071 21.8 7.3 54 26-94 92-145 (267)
246 KOG0358 Chaperonin complex com 26.9 1.5E+02 0.0032 25.6 4.9 45 7-51 237-300 (534)
247 COG1603 RPP1 RNase P/RNase MRP 26.9 2E+02 0.0043 22.8 5.4 22 31-52 88-110 (229)
248 PRK15093 antimicrobial peptide 26.9 1.9E+02 0.0041 24.0 5.7 44 73-117 195-239 (330)
249 PRK11144 modC molybdate transp 26.8 2.1E+02 0.0046 24.0 6.0 43 74-117 166-209 (352)
250 TIGR01856 hisJ_fam histidinol 26.7 3.2E+02 0.007 21.6 7.0 66 27-96 15-84 (253)
251 PLN02380 1-acyl-sn-glycerol-3- 26.7 1.8E+02 0.004 24.8 5.6 27 26-52 148-176 (376)
252 TIGR03128 RuMP_HxlA 3-hexulose 26.5 2.2E+02 0.0047 21.5 5.6 42 32-94 68-109 (206)
253 cd02971 PRX_family Peroxiredox 26.4 1.6E+02 0.0035 20.3 4.6 21 101-121 108-128 (140)
254 PRK09453 phosphodiesterase; Pr 26.4 88 0.0019 23.2 3.3 33 9-46 1-33 (182)
255 PRK13645 cbiO cobalt transport 26.4 2.1E+02 0.0045 23.1 5.7 42 74-116 188-230 (289)
256 PRK09473 oppD oligopeptide tra 26.3 2E+02 0.0044 23.8 5.8 44 74-118 199-243 (330)
257 PRK11247 ssuB aliphatic sulfon 26.3 2E+02 0.0044 22.8 5.6 43 74-117 171-214 (257)
258 TIGR02769 nickel_nikE nickel i 26.2 2.4E+02 0.0051 22.4 6.0 43 74-117 188-231 (265)
259 cd03294 ABC_Pro_Gly_Bertaine T 26.0 2.4E+02 0.0051 22.5 6.0 42 74-116 198-240 (269)
260 PRK11022 dppD dipeptide transp 26.0 2E+02 0.0043 23.8 5.7 44 74-118 191-235 (326)
261 cd05561 Peptidases_S8_4 Peptid 25.9 3.2E+02 0.007 21.3 7.2 50 25-94 78-127 (239)
262 cd07261 Glo_EDI_BRP_like_11 Th 25.8 2E+02 0.0043 18.8 5.6 43 74-119 71-113 (114)
263 cd03300 ABC_PotA_N PotA is an 25.7 2.1E+02 0.0045 22.1 5.5 65 36-115 144-209 (232)
264 PRK10418 nikD nickel transport 25.7 2.1E+02 0.0045 22.5 5.5 42 74-116 178-220 (254)
265 TIGR00629 uvde UV damage endon 25.7 3.9E+02 0.0086 22.2 7.5 64 24-92 49-112 (312)
266 cd00984 DnaB_C DnaB helicase C 25.6 2.9E+02 0.0063 21.2 6.3 61 27-94 109-170 (242)
267 PRK10575 iron-hydroxamate tran 25.5 2.5E+02 0.0053 22.2 6.0 67 36-117 161-228 (265)
268 PRK13536 nodulation factor exp 25.4 1.7E+02 0.0037 24.4 5.2 67 36-118 186-253 (340)
269 PRK06724 hypothetical protein; 25.4 2.4E+02 0.0052 19.6 5.4 47 72-118 73-120 (128)
270 PF04898 Glu_syn_central: Glut 25.2 1.3E+02 0.0028 24.7 4.3 32 20-51 135-166 (287)
271 PF14871 GHL6: Hypothetical gl 25.2 2.2E+02 0.0048 20.3 5.0 63 31-96 4-66 (132)
272 cd03216 ABC_Carb_Monos_I This 25.0 1.6E+02 0.0035 21.4 4.5 69 32-116 92-161 (163)
273 PRK13111 trpA tryptophan synth 25.0 2.5E+02 0.0053 22.6 5.8 19 74-92 129-147 (258)
274 COG4100 Cystathionine beta-lya 24.9 1.1E+02 0.0024 25.6 3.8 50 3-52 160-211 (416)
275 PRK06015 keto-hydroxyglutarate 24.9 1.7E+02 0.0036 22.7 4.6 39 32-96 68-106 (201)
276 PRK11000 maltose/maltodextrin 24.8 2E+02 0.0044 24.3 5.6 43 74-117 171-214 (369)
277 cd03232 ABC_PDR_domain2 The pl 24.5 3E+02 0.0064 20.5 6.0 69 33-116 119-189 (192)
278 PRK09536 btuD corrinoid ABC tr 24.5 1.9E+02 0.0041 24.9 5.4 69 33-117 150-219 (402)
279 PRK08043 bifunctional acyl-[ac 24.5 1.7E+02 0.0037 26.9 5.4 48 29-92 87-134 (718)
280 PRK15134 microcin C ABC transp 24.3 2.2E+02 0.0047 25.3 5.9 43 74-117 463-506 (529)
281 PRK04147 N-acetylneuraminate l 24.3 2.1E+02 0.0045 23.3 5.4 56 24-95 83-139 (293)
282 PF01208 URO-D: Uroporphyrinog 24.2 2.9E+02 0.0063 22.7 6.3 52 28-88 183-234 (343)
283 PLN02591 tryptophan synthase 24.0 2.9E+02 0.0062 22.1 6.0 27 155-181 192-220 (250)
284 PLN02510 probable 1-acyl-sn-gl 24.0 1.4E+02 0.003 25.5 4.4 12 40-51 172-183 (374)
285 PRK11248 tauB taurine transpor 24.0 2.9E+02 0.0063 21.8 6.1 44 74-117 166-211 (255)
286 COG1712 Predicted dinucleotide 24.0 2.8E+02 0.0061 22.2 5.6 49 25-92 69-117 (255)
287 PRK07695 transcriptional regul 23.9 2.8E+02 0.0061 20.9 5.8 20 33-52 108-127 (201)
288 smart00037 CNX Connexin homolo 23.7 40 0.00086 18.1 0.7 9 157-165 22-30 (34)
289 TIGR03855 NAD_NadX aspartate d 23.5 3.5E+02 0.0075 21.3 6.3 48 27-93 48-95 (229)
290 PRK00115 hemE uroporphyrinogen 23.5 3.8E+02 0.0081 22.3 6.9 48 30-86 189-236 (346)
291 PRK13644 cbiO cobalt transport 23.5 2.1E+02 0.0045 22.9 5.2 65 36-116 150-214 (274)
292 KOG2848 1-acyl-sn-glycerol-3-p 23.4 1.5E+02 0.0033 24.0 4.2 32 20-51 143-174 (276)
293 TIGR01188 drrA daunorubicin re 23.3 2.1E+02 0.0045 23.3 5.2 66 36-117 138-204 (302)
294 cd07985 LPLAT_GPAT Lysophospho 23.2 3.1E+02 0.0067 21.9 5.9 60 23-88 98-157 (235)
295 PRK13647 cbiO cobalt transport 23.2 2.3E+02 0.0049 22.7 5.4 65 36-116 152-217 (274)
296 PRK11432 fbpC ferric transport 23.2 2.3E+02 0.005 23.8 5.5 68 35-117 149-217 (351)
297 PRK10419 nikE nickel transport 23.2 2.3E+02 0.0051 22.5 5.4 42 74-116 189-231 (268)
298 PF09587 PGA_cap: Bacterial ca 23.1 3.7E+02 0.0081 21.1 7.2 69 26-109 170-240 (250)
299 COG1136 SalX ABC-type antimicr 23.1 2.5E+02 0.0053 22.2 5.3 72 28-114 148-219 (226)
300 TIGR03269 met_CoM_red_A2 methy 23.1 2.2E+02 0.0049 25.1 5.7 42 74-116 465-507 (520)
301 PF09818 ABC_ATPase: Predicted 23.0 3.7E+02 0.008 23.7 6.7 61 30-92 330-393 (448)
302 PRK15079 oligopeptide ABC tran 23.0 2.5E+02 0.0054 23.3 5.7 43 74-117 199-242 (331)
303 cd00563 Dtyr_deacylase D-Tyros 22.7 73 0.0016 23.3 2.1 54 37-90 67-120 (145)
304 PRK14258 phosphate ABC transpo 22.6 3.2E+02 0.007 21.5 6.1 42 74-116 188-235 (261)
305 PRK10785 maltodextrin glucosid 22.6 3E+02 0.0065 25.0 6.5 68 24-95 176-247 (598)
306 cd03230 ABC_DR_subfamily_A Thi 22.5 2.2E+02 0.0047 20.8 4.8 67 32-114 105-172 (173)
307 cd00340 GSH_Peroxidase Glutath 22.5 91 0.002 22.4 2.7 16 105-120 125-140 (152)
308 TIGR01182 eda Entner-Doudoroff 22.5 2.1E+02 0.0045 22.2 4.7 39 32-96 72-110 (204)
309 TIGR03258 PhnT 2-aminoethylpho 22.5 2.4E+02 0.0053 23.8 5.6 69 34-117 149-219 (362)
310 PRK13537 nodulation ABC transp 22.3 2.2E+02 0.0047 23.3 5.2 67 36-118 152-219 (306)
311 PF00128 Alpha-amylase: Alpha 22.2 97 0.0021 24.5 3.1 70 27-96 4-74 (316)
312 PF01408 GFO_IDH_MocA: Oxidore 22.2 2.5E+02 0.0054 18.7 5.5 22 73-94 99-120 (120)
313 TIGR03269 met_CoM_red_A2 methy 22.1 3.1E+02 0.0066 24.2 6.4 42 74-116 206-248 (520)
314 PF12681 Glyoxalase_2: Glyoxal 22.0 2.3E+02 0.0049 18.2 6.9 43 74-118 65-107 (108)
315 TIGR02482 PFKA_ATP 6-phosphofr 21.9 2E+02 0.0044 23.7 4.8 16 36-51 180-195 (301)
316 PLN02361 alpha-amylase 21.9 4.3E+02 0.0094 22.8 7.0 82 11-96 12-98 (401)
317 cd03223 ABCD_peroxisomal_ALDP 21.9 3.2E+02 0.0069 19.8 7.1 64 32-113 101-164 (166)
318 TIGR01464 hemE uroporphyrinoge 21.8 4.4E+02 0.0095 21.7 7.0 47 31-86 184-230 (338)
319 TIGR02483 PFK_mixed phosphofru 21.8 2E+02 0.0043 24.0 4.8 15 36-50 182-196 (324)
320 PRK05583 ribosomal protein L7A 21.8 2.7E+02 0.0058 18.9 5.2 35 37-92 30-64 (104)
321 cd03246 ABCC_Protease_Secretio 21.7 2.4E+02 0.0051 20.6 4.9 69 30-114 104-172 (173)
322 PRK15134 microcin C ABC transp 21.6 2.6E+02 0.0057 24.7 5.9 43 74-117 194-237 (529)
323 cd07483 Peptidases_S8_Subtilis 21.6 4.3E+02 0.0094 21.3 6.9 50 27-93 128-177 (291)
324 PRK13651 cobalt transporter AT 21.6 2.6E+02 0.0056 22.9 5.4 42 74-117 203-245 (305)
325 PRK09452 potA putrescine/sperm 21.6 2.6E+02 0.0057 23.7 5.6 69 35-118 157-226 (375)
326 TIGR00068 glyox_I lactoylgluta 21.5 3E+02 0.0065 19.4 5.4 44 76-120 97-140 (150)
327 cd01834 SGNH_hydrolase_like_2 21.5 3.2E+02 0.0069 19.7 6.9 77 10-91 63-151 (191)
328 COG0800 Eda 2-keto-3-deoxy-6-p 21.5 1.7E+02 0.0036 23.0 4.0 39 32-96 77-115 (211)
329 PRK11308 dppF dipeptide transp 21.5 2.7E+02 0.0059 23.0 5.6 43 74-117 192-235 (327)
330 COG1105 FruK Fructose-1-phosph 21.4 4.5E+02 0.0097 21.9 6.7 52 23-92 113-164 (310)
331 cd07241 Glo_EDI_BRP_like_3 Thi 21.4 2.5E+02 0.0054 18.4 6.1 42 74-117 82-123 (125)
332 TIGR03586 PseI pseudaminic aci 21.3 3.9E+02 0.0084 22.4 6.4 74 20-96 10-99 (327)
333 COG0566 SpoU rRNA methylases [ 21.2 3.5E+02 0.0075 21.7 6.0 81 30-114 124-215 (260)
334 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 21.2 2.6E+02 0.0057 21.4 5.2 66 35-116 155-221 (224)
335 cd00763 Bacterial_PFK Phosphof 21.2 2.1E+02 0.0045 23.8 4.8 16 36-51 180-195 (317)
336 PRK10938 putative molybdenum t 21.2 5.6E+02 0.012 22.3 7.8 67 35-116 414-482 (490)
337 TIGR03410 urea_trans_UrtE urea 21.2 3.4E+02 0.0073 20.7 5.9 42 74-116 169-211 (230)
338 PRK10933 trehalose-6-phosphate 21.2 3.7E+02 0.0079 24.2 6.7 68 24-95 30-102 (551)
339 cd00613 GDC-P Glycine cleavage 21.1 2.4E+02 0.0051 23.6 5.3 19 74-92 176-194 (398)
340 TIGR03265 PhnT2 putative 2-ami 21.1 2.7E+02 0.0057 23.4 5.5 69 35-118 147-216 (353)
341 smart00812 Alpha_L_fucos Alpha 20.9 2.8E+02 0.006 23.8 5.6 62 30-92 84-146 (384)
342 PRK14072 6-phosphofructokinase 20.8 2E+02 0.0044 24.9 4.8 13 39-51 208-220 (416)
343 TIGR00067 glut_race glutamate 20.8 2E+02 0.0044 22.9 4.6 34 19-52 39-73 (251)
344 PF08423 Rad51: Rad51; InterP 20.6 1.2E+02 0.0027 24.1 3.3 71 22-95 115-186 (256)
345 TIGR02403 trehalose_treC alpha 20.6 3.9E+02 0.0085 24.0 6.7 68 24-95 24-96 (543)
346 PF10367 Vps39_2: Vacuolar sor 20.5 1.9E+02 0.0042 19.0 3.9 44 74-117 57-103 (109)
347 COG0159 TrpA Tryptophan syntha 20.3 3.3E+02 0.0071 22.2 5.6 19 74-92 134-152 (265)
348 PF02569 Pantoate_ligase: Pant 20.2 52 0.0011 26.9 1.1 34 15-48 61-94 (280)
349 PRK13911 exodeoxyribonuclease 20.2 1.2E+02 0.0026 24.2 3.1 21 32-52 19-39 (250)
350 cd04724 Tryptophan_synthase_al 20.2 3.6E+02 0.0078 21.2 5.9 18 75-92 117-134 (242)
351 COG0001 HemL Glutamate-1-semia 20.2 2.3E+02 0.0049 24.8 4.9 54 25-92 186-239 (432)
352 PRK06552 keto-hydroxyglutarate 20.2 2.3E+02 0.005 22.0 4.6 39 32-96 80-118 (213)
353 cd02072 Glm_B12_BD B12 binding 20.1 3.3E+02 0.0073 19.4 5.8 23 29-51 39-61 (128)
354 PRK11231 fecE iron-dicitrate t 20.1 3.7E+02 0.008 21.0 6.0 66 36-117 152-218 (255)
355 PF06838 Met_gamma_lyase: Meth 20.1 1.5E+02 0.0033 25.4 3.7 45 7-51 153-199 (403)
No 1
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=2.1e-37 Score=250.87 Aligned_cols=173 Identities=58% Similarity=0.930 Sum_probs=152.4
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 9 ~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
||||++|+++..|+++|++++.+++++|+++|+|||||||++++||.+.+....+.+.++....++.++.++++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 80 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV 80 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence 68999999988899999999999999999999999999999999997654333344555544445789999999999999
Q ss_pred EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP 168 (198)
Q Consensus 89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r 168 (198)
+|++|++++.++++||++++|+++|++++.|+|.||+..+.+.|..+|++|+..+++|+++++|+|++||||.+|||.+|
T Consensus 81 ~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~~fpe~~r 160 (279)
T TIGR03381 81 VIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETAR 160 (279)
T ss_pred EEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcCCcChHHHH
Confidence 99999999888899999999999999999999999987555678889999985479999999999999999999999999
Q ss_pred cc--CCCCccccccc
Q 029167 169 SR--LDFPLPFLNRF 181 (198)
Q Consensus 169 ~~--~~~~~~~~~~~ 181 (198)
.+ +|+++++++++
T Consensus 161 ~~a~~ga~lil~ps~ 175 (279)
T TIGR03381 161 AMALMGAEVLFYPTA 175 (279)
T ss_pred HHHHcCCCEEEecCc
Confidence 85 89999987653
No 2
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=1.4e-36 Score=248.28 Aligned_cols=178 Identities=70% Similarity=1.085 Sum_probs=154.6
Q ss_pred CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167 4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (198)
Q Consensus 4 ~~~~~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a 83 (198)
.|..++|||++|+++..|++.|++++.+++++|+++|+|||||||++++||.+.....++.+.++....++.++.++++|
T Consensus 2 ~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 81 (296)
T PLN02747 2 GMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLA 81 (296)
T ss_pred CCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHH
Confidence 36678999999999988999999999999999999999999999999999976543334444444444357889999999
Q ss_pred HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccC
Q 029167 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIF 163 (198)
Q Consensus 84 ~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~ 163 (198)
++++++|++|++++.++++||++++|+++|+++++|+|.||+..+.+.|..+|++|+..+++|+++++|+|++||||.+|
T Consensus 82 ~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~D~~f 161 (296)
T PLN02747 82 KELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQWF 161 (296)
T ss_pred HHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEccccc
Confidence 99999999999988889999999999999999999999999875556677889999754799999999999999999999
Q ss_pred Ccccccc--CCCCccccccc
Q 029167 164 DDDFPSR--LDFPLPFLNRF 181 (198)
Q Consensus 164 pe~~r~~--~~~~~~~~~~~ 181 (198)
|+.+|.+ +|++++++++.
T Consensus 162 pe~~r~~~~~Ga~lil~ps~ 181 (296)
T PLN02747 162 PEAARAMVLQGAEVLLYPTA 181 (296)
T ss_pred hHHHHHHHHCCCCEEEEeCc
Confidence 9999985 89999987544
No 3
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.9e-36 Score=246.32 Aligned_cols=175 Identities=31% Similarity=0.529 Sum_probs=152.1
Q ss_pred CccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHH
Q 029167 7 REVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (198)
Q Consensus 7 ~~~~ia~~Q~~~~--------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~ 78 (198)
.+||||++|+++. .+.++|++++.+++++|.++|+|||||||++++||.+.+....+.+.++....++.++.
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKR 81 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHH
Confidence 4699999999974 78899999999999999999999999999999998754433334455554423678999
Q ss_pred HHHHHHHhCCEEEEeeeecc-CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEee
Q 029167 79 MQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLIC 157 (198)
Q Consensus 79 l~~~a~~~~i~iv~g~~~~~-~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 157 (198)
|+++|+++++++++|+.++. ++++||++++|+++|++++.|+|.||++++++.|..+|.+|+....+|+++++|+|++|
T Consensus 82 l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~I 161 (287)
T cd07568 82 FAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYI 161 (287)
T ss_pred HHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEEE
Confidence 99999999999999988765 57899999999999999999999999998888888899999844799999999999999
Q ss_pred eecccCCcccccc--CCCCccccccc
Q 029167 158 FFDLIFDDDFPSR--LDFPLPFLNRF 181 (198)
Q Consensus 158 C~d~~~pe~~r~~--~~~~~~~~~~~ 181 (198)
|||.+||+++|.+ +|++++++++.
T Consensus 162 CyD~~fpe~~r~la~~Ga~li~~ps~ 187 (287)
T cd07568 162 CYDRHFPEGWRALGLNGAEIVFNPSA 187 (287)
T ss_pred EecccCchHHHHHHHCCCeEEEECCc
Confidence 9999999999885 89999987653
No 4
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=4.1e-36 Score=250.94 Aligned_cols=175 Identities=23% Similarity=0.269 Sum_probs=150.5
Q ss_pred CccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh-hhHHHHhcCCCCCChHHH
Q 029167 7 REVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTIL 77 (198)
Q Consensus 7 ~~~~ia~~Q~~~~--------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~-~~~~~~~a~~~~~~~~~~ 77 (198)
+.||||++|.++. .|++.|++++.+++++|+++|+|||||||++++||..... ...+.+.++...+++.++
T Consensus 62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~ 141 (363)
T cd07587 62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTK 141 (363)
T ss_pred ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHH
Confidence 3699999998862 4899999999999999999999999999999998853211 113445555543478999
Q ss_pred HHHHHHHHhCCEEEEeeeeccC---CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEE
Q 029167 78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLN 154 (198)
Q Consensus 78 ~l~~~a~~~~i~iv~g~~~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig 154 (198)
.|+++|++++++|++|+.++.+ +++||++++|+++|++++.|+|.||+.++.+.|+.+|.+|+..+++|+++++|+|
T Consensus 142 ~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~griG 221 (363)
T cd07587 142 FCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKIA 221 (363)
T ss_pred HHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceEE
Confidence 9999999999999999988753 6899999999999999999999999987777899999999865789999999999
Q ss_pred EeeeecccCCcccccc--CCCCccccccc
Q 029167 155 LICFFDLIFDDDFPSR--LDFPLPFLNRF 181 (198)
Q Consensus 155 ~~IC~d~~~pe~~r~~--~~~~~~~~~~~ 181 (198)
++||||.+|||.+|.+ +||+++++|++
T Consensus 222 ~~ICyD~~fPe~~r~la~~GAdiil~Psa 250 (363)
T cd07587 222 VNICYGRHHPLNWLMYGLNGAEIVFNPSA 250 (363)
T ss_pred EEEecccCCcHHHHHHHHcCCcEEEECCC
Confidence 9999999999999985 89999987644
No 5
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=2.5e-35 Score=248.79 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=150.6
Q ss_pred CCccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHH
Q 029167 6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (198)
Q Consensus 6 ~~~~~ia~~Q~~~~--------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~ 77 (198)
.++||||++|.++. .+.+.|++++.+++++|+++|+|||||||++.+||........+.+.++..+ +...+
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~-g~~~~ 162 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-GESTK 162 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCC-CHHHH
Confidence 46799999999972 4899999999999999999999999999999998854111112445566554 68899
Q ss_pred HHHHHHHHhCCEEEEeeeecc---CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEE
Q 029167 78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLN 154 (198)
Q Consensus 78 ~l~~~a~~~~i~iv~g~~~~~---~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig 154 (198)
.++++|++++++|++|+.++. ++++|||+++|+++|+++++|+|.||+++++|.|+.+|.+|+.+.++|+++++|+|
T Consensus 163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiG 242 (405)
T PLN00202 163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIA 242 (405)
T ss_pred HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEE
Confidence 999999999999999988764 35799999999999999999999999998888899999999975689999999999
Q ss_pred EeeeecccCCcccccc--CCCCcccccc
Q 029167 155 LICFFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 155 ~~IC~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
++||||.+|||++|.+ +||+++++|+
T Consensus 243 v~ICYD~~FPE~~r~la~~GAdiIl~Ps 270 (405)
T PLN00202 243 VNICYGRHHPLNWLAFGLNGAEIVFNPS 270 (405)
T ss_pred EEEccccccHHHHHHHHHCCCcEEEECC
Confidence 9999999999999995 8999998754
No 6
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=100.00 E-value=1.7e-35 Score=226.00 Aligned_cols=169 Identities=27% Similarity=0.367 Sum_probs=142.0
Q ss_pred EEEEEeCCC---CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCc----chhhhHHHHhcCCCCCChHHHHHHHH
Q 029167 10 VVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC----QAQREDFFQRAKPYKDHPTILKMQEL 82 (198)
Q Consensus 10 ~ia~~Q~~~---~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~----~~~~~~~~~~a~~~~~~~~~~~l~~~ 82 (198)
|||++|.++ ..+.++|++++.+++++|.++++|||||||++++||.. .+...++.+.+.... ++.++.+.++
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 79 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLD-GPYLERLAEL 79 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHST-SHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccc-cHHHHHHHHH
Confidence 799999995 68899999999999999999999999999999999832 333344555554443 6899999999
Q ss_pred HHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCC-ccccccCCCCCeeeEEeC-----CceEEEe
Q 029167 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-EKFYFNPGDTGFKVGAWN-----NLNLNLI 156 (198)
Q Consensus 83 a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~-e~~~~~~G~~~~~~~~~~-----~~~ig~~ 156 (198)
++++++++++|+++..++++||++++|+++|+++++|+|.||+|++++. |+.+|.+|....++|+++ |+|+|++
T Consensus 80 a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~~ 159 (186)
T PF00795_consen 80 AKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGVL 159 (186)
T ss_dssp HHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEEEEEE
T ss_pred HHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccceEEEE
Confidence 9999999999999999999999999999999999999999999999988 888999985546676664 7999999
Q ss_pred eeecccCCcccccc--CCCCccccc
Q 029167 157 CFFDLIFDDDFPSR--LDFPLPFLN 179 (198)
Q Consensus 157 IC~d~~~pe~~r~~--~~~~~~~~~ 179 (198)
||||.+||+++|.+ +|+++++++
T Consensus 160 ICyd~~fp~~~~~~~~~ga~il~~~ 184 (186)
T PF00795_consen 160 ICYDLRFPELVRELAKQGADILINP 184 (186)
T ss_dssp EGGGGGSHHHHHHHHHTTESEEEEE
T ss_pred EEcccCChHHHHHHHHCCCCEEEeC
Confidence 99999999966653 555555544
No 7
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=8.7e-35 Score=233.12 Aligned_cols=163 Identities=17% Similarity=0.288 Sum_probs=136.2
Q ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (198)
Q Consensus 7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~ 85 (198)
++||||++|.+. ..|++.|++++.+++++| +|+|||||||++++||...+. .+ ....++..+.++++|++
T Consensus 2 ~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~----~~---~~~~~~~~~~l~~~A~~ 72 (256)
T PRK10438 2 SGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAA----AS---SLPQDDVVAWMTAKAQQ 72 (256)
T ss_pred CCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccch----hh---ccccchHHHHHHHHHHH
Confidence 359999999998 689999999999999986 699999999999999975431 11 11124678999999999
Q ss_pred hCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCc
Q 029167 86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDD 165 (198)
Q Consensus 86 ~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe 165 (198)
+++.|+++..++.++++|||+++|+++|. ++.|+|.||++. +.|..+|++|+. +++|+++++|+|++||||.+|||
T Consensus 73 ~~~~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ICyD~~fPe 148 (256)
T PRK10438 73 TNALIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVCYDLRFPV 148 (256)
T ss_pred cCeEEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEEeecCCHH
Confidence 99755434445556789999999999997 679999999764 357889999998 89999999999999999999999
Q ss_pred cccccCCCCccccc-ccc
Q 029167 166 DFPSRLDFPLPFLN-RFS 182 (198)
Q Consensus 166 ~~r~~~~~~~~~~~-~~~ 182 (198)
++|.+.|+++++++ .|.
T Consensus 149 ~~r~l~gad~i~~~s~~~ 166 (256)
T PRK10438 149 WSRNRNDYDLALYVANWP 166 (256)
T ss_pred HHHhhcCCCEEEEecCCC
Confidence 99999999999853 453
No 8
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=1.4e-34 Score=231.34 Aligned_cols=163 Identities=28% Similarity=0.434 Sum_probs=144.8
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
|||++|+++ ..+++.|++++.+++++|.++|+|+|||||++++||...+. +.+.+.... ++..+.++++|+++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~---~~~~~~~~~-~~~~~~l~~~a~~~~~ 76 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDA---VARLAEPAD-GPALQALRAIARRHGI 76 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcch---hhhhhcccC-ChHHHHHHHHHHHcCC
Confidence 699999999 78999999999999999999999999999999999986542 111222222 6789999999999999
Q ss_pred EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP 168 (198)
Q Consensus 89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r 168 (198)
++++|++++.++++||++++|+++|++++.|+|.||+++ .|..+|++|+. +++|+++++|+|++||||.+|||++|
T Consensus 77 ~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~---~E~~~~~~G~~-~~v~~~~~~kig~~IC~D~~fpe~~~ 152 (254)
T cd07576 77 AIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD---SERAAFTPGDR-FPVVELRGLRVGLLICYDVEFPELVR 152 (254)
T ss_pred EEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCCc---chhhhccCCCC-ceEEEECCeEEEEEEeecCCCCHHHH
Confidence 999999998889999999999999999999999999872 47788999999 89999999999999999999999999
Q ss_pred cc--CCCCcccccc
Q 029167 169 SR--LDFPLPFLNR 180 (198)
Q Consensus 169 ~~--~~~~~~~~~~ 180 (198)
.+ .|++++++++
T Consensus 153 ~~~~~gadii~~p~ 166 (254)
T cd07576 153 ALALAGADLVLVPT 166 (254)
T ss_pred HHHHCCCCEEEECC
Confidence 86 8999998765
No 9
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.2e-34 Score=231.66 Aligned_cols=163 Identities=26% Similarity=0.388 Sum_probs=143.4
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
|||++|+++ ..+.++|++++.+++++|.++|+|||||||++++||.+.+. ...+.... ++.++.++++|+++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~----~~~~~~~~-~~~~~~l~~~a~~~~~ 75 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDL----YELADEDG-GETVSFLSELAKKHGV 75 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhH----HhhhcccC-chHHHHHHHHHHHcCc
Confidence 699999999 68999999999999999999999999999999999976542 22223333 6889999999999999
Q ss_pred EEEEeee-eccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167 89 VMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF 167 (198)
Q Consensus 89 ~iv~g~~-~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~ 167 (198)
++++|+. ++.++++||++++|+++|++++.|+|+||+++ +.|..+|++|+. +++|+++++|+|++||||.+|||++
T Consensus 76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~ 152 (253)
T cd07583 76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICYDLRFPELF 152 (253)
T ss_pred EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEeccccHHHH
Confidence 9999975 55678999999999999999999999999985 357788999998 8999999999999999999999999
Q ss_pred ccc--CCCCcccccc
Q 029167 168 PSR--LDFPLPFLNR 180 (198)
Q Consensus 168 r~~--~~~~~~~~~~ 180 (198)
|.+ +|++++++++
T Consensus 153 r~~~~~ga~ll~~ps 167 (253)
T cd07583 153 RKLALEGAEILFVPA 167 (253)
T ss_pred HHHHHcCCcEEEECC
Confidence 986 8999998653
No 10
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.6e-34 Score=234.67 Aligned_cols=173 Identities=50% Similarity=0.782 Sum_probs=150.2
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 9 ~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
||||++|+++..|++.|++++.+++++|.++|+|||||||++++||.+.+...++.+.++....++.++.++++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i 80 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGV 80 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCE
Confidence 69999999998899999999999999999999999999999999998765433444555411236788999999999999
Q ss_pred EEEEeeeecc-CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF 167 (198)
Q Consensus 89 ~iv~g~~~~~-~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~ 167 (198)
++++|+.++. ++++||++++|+++|+++++|+|.||+..+.+.|..+|.+|+..+++|+++++|+|++||||.+||+++
T Consensus 81 ~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~ 160 (284)
T cd07573 81 VIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWFPEAA 160 (284)
T ss_pred EEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEeccccchHHH
Confidence 9999998875 468999999999999999999999998765567888899999338999999999999999999999999
Q ss_pred ccc--CCCCccccccc
Q 029167 168 PSR--LDFPLPFLNRF 181 (198)
Q Consensus 168 r~~--~~~~~~~~~~~ 181 (198)
|.+ .|++++++++.
T Consensus 161 r~~~~~gadlil~ps~ 176 (284)
T cd07573 161 RLMALQGAEILFYPTA 176 (284)
T ss_pred HHHHHCCCCEEEecCc
Confidence 886 89999987553
No 11
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=1.6e-34 Score=236.15 Aligned_cols=165 Identities=24% Similarity=0.297 Sum_probs=141.5
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh-------hh---HHHHhcCCCCCChHHH
Q 029167 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-------RE---DFFQRAKPYKDHPTIL 77 (198)
Q Consensus 9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~-------~~---~~~~~a~~~~~~~~~~ 77 (198)
||||++|+++ +.|++.|++++.+++++|+++|+|+|||||++++||...+. .+ ++.+.+...+ +..++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVD-GPELE 79 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCC-CHHHH
Confidence 6899999998 78999999999999999999999999999999999976321 11 2233343333 68899
Q ss_pred HHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCC-CeeeEEeCCceEEEe
Q 029167 78 KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVGAWNNLNLNLI 156 (198)
Q Consensus 78 ~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~~ig~~ 156 (198)
.|+++|++++++|++|++++.++++||++++|+++|+++++|+|.||.. .|..+|.+|.. .+++|+++++|+|++
T Consensus 80 ~l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig~~ 155 (297)
T cd07564 80 RLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLGAL 155 (297)
T ss_pred HHHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEEEE
Confidence 9999999999999999998878899999999999999999999999764 57778898873 268999999999999
Q ss_pred eeecccCCcccccc--CCCCcccc
Q 029167 157 CFFDLIFDDDFPSR--LDFPLPFL 178 (198)
Q Consensus 157 IC~d~~~pe~~r~~--~~~~~~~~ 178 (198)
||||.+|||++|.+ +||+++++
T Consensus 156 ICyD~~fPe~~r~~a~~ga~ii~~ 179 (297)
T cd07564 156 ICWENYMPLARYALYAQGEQIHVA 179 (297)
T ss_pred EEhhcCCHHHHHHHHHCCCeEEEE
Confidence 99999999988875 78888775
No 12
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.3e-34 Score=234.78 Aligned_cols=158 Identities=27% Similarity=0.368 Sum_probs=141.1
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCE
Q 029167 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (198)
Q Consensus 10 ~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~ 89 (198)
|||++|+++..|+++|++++.+++++|+++|+|||||||++++||.... ..+.... ++.++.++++|++++++
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~------~~~~~~~-~~~~~~l~~lA~~~~i~ 73 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA------SEAESDT-GPAVSALRRLARRLRLY 73 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH------HhcccCC-CHHHHHHHHHHHHcCeE
Confidence 6999999996699999999999999999999999999999999986432 1233332 57899999999999999
Q ss_pred EEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccccc
Q 029167 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPS 169 (198)
Q Consensus 90 iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r~ 169 (198)
+++|++++.++++||++++|+++| +++.|+|.||++ .|..+|++|+. +++|+++++|+|++||||.+|||++|.
T Consensus 74 iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICyD~~fPe~~r~ 147 (279)
T cd07579 74 LVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGHDALFPEAGRV 147 (279)
T ss_pred EEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEeccccCcHHHHH
Confidence 999999888889999999999989 679999999986 47789999998 899999999999999999999999998
Q ss_pred c--CCCCcccccc
Q 029167 170 R--LDFPLPFLNR 180 (198)
Q Consensus 170 ~--~~~~~~~~~~ 180 (198)
+ .||+++++++
T Consensus 148 ~a~~Ga~ii~~ps 160 (279)
T cd07579 148 LALRGCDLLACPA 160 (279)
T ss_pred HHHCCCCEEEECC
Confidence 6 8999998765
No 13
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=3.1e-34 Score=235.02 Aligned_cols=171 Identities=23% Similarity=0.332 Sum_probs=141.8
Q ss_pred CccEEEEEeCCC-CC--CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh---hhHHHHhcCCCCCChHHHHHH
Q 029167 7 REVVVSALQFAC-TD--DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---REDFFQRAKPYKDHPTILKMQ 80 (198)
Q Consensus 7 ~~~~ia~~Q~~~-~~--~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~---~~~~~~~a~~~~~~~~~~~l~ 80 (198)
.+||||++|+++ .. +.+.|++++.+++++|+++|+|||||||++++||..... ..+.....+....++..+.++
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF 81 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence 369999999987 33 789999999999999999999999999999999854211 111211111111257889999
Q ss_pred HHHHHhCCEEEEeeeecc-CC---eeEEEEEEEcCCCCeeeeeeeccCCCCCCC--------CccccccCCC-CCeeeEE
Q 029167 81 ELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGY--------QEKFYFNPGD-TGFKVGA 147 (198)
Q Consensus 81 ~~a~~~~i~iv~g~~~~~-~~---~~yNs~~~i~~~G~il~~y~K~~l~~~~~~--------~e~~~~~~G~-~~~~~~~ 147 (198)
++|+++++.+++|++++. ++ ++||++++|+++|+++++|+|.||++++++ .|..+|++|+ . +++|+
T Consensus 82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~-~~v~~ 160 (302)
T cd07569 82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLG-FPVFR 160 (302)
T ss_pred HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCC-CceEe
Confidence 999999999999998753 44 899999999999999999999999886643 3677899999 6 89999
Q ss_pred eCCceEEEeeeecccCCcccccc--CCCCcccc
Q 029167 148 WNNLNLNLICFFDLIFDDDFPSR--LDFPLPFL 178 (198)
Q Consensus 148 ~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~ 178 (198)
++++|+|++||||.+|||++|.+ +|++++++
T Consensus 161 ~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~ 193 (302)
T cd07569 161 VPGGIMGMCICNDRRWPETWRVMGLQGVELVLL 193 (302)
T ss_pred cCCceEEEEEeeccccchHHHHHHHCCCcEEEe
Confidence 99999999999999999998885 88998885
No 14
>PLN02504 nitrilase
Probab=100.00 E-value=3.3e-34 Score=238.33 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=145.1
Q ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh---------------hhHHHHhcCCC
Q 029167 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---------------REDFFQRAKPY 70 (198)
Q Consensus 7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~---------------~~~~~~~a~~~ 70 (198)
++||||++|.++ ..|.+.|++++++++++|+++|+|||||||++++||+.... ...+...+...
T Consensus 23 ~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 102 (346)
T PLN02504 23 STVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDV 102 (346)
T ss_pred CceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccC
Confidence 569999999999 68999999999999999999999999999999999975211 01223334444
Q ss_pred CCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCC-CeeeEEeC
Q 029167 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVGAWN 149 (198)
Q Consensus 71 ~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~ 149 (198)
+ ++.++.|+++|++++++|++|++++.++++||++++|+++|+++++|+|.|+.+ .|+.+|.+|.. .+++|+++
T Consensus 103 ~-g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~~ 177 (346)
T PLN02504 103 P-GPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDTP 177 (346)
T ss_pred C-CHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEcC
Confidence 4 688999999999999999999998888899999999999999999999998865 47788888873 37899999
Q ss_pred CceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167 150 NLNLNLICFFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 150 ~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
++|+|++||||.+|||++|.+ +|++++++++
T Consensus 178 ~griG~lICyD~~fPe~~r~la~~Gadii~~p~ 210 (346)
T PLN02504 178 IGKIGAVICWENRMPLLRTAMYAKGIEIYCAPT 210 (346)
T ss_pred CceEEEEEeccchhHHHHHHHHHCCCeEEEECC
Confidence 999999999999999998885 8999998764
No 15
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.6e-34 Score=230.42 Aligned_cols=165 Identities=30% Similarity=0.431 Sum_probs=144.6
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
|||++|++. +.|.+.|++++.+++++|.++|+|||||||++++||.+........+.+.... ++..+.++++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPID-GPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCC-CcHHHHHHHHHHHcCe
Confidence 699999998 78999999999999999999999999999999999987543333334444433 5788999999999999
Q ss_pred EEEEeeeeccC--CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcc
Q 029167 89 VMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDD 166 (198)
Q Consensus 89 ~iv~g~~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~ 166 (198)
++++|+++..+ +++||++++|+++|++++.|+|.||++ .|..+|++|+. +++|+++++|+|++||||++||++
T Consensus 80 ~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~D~~fpe~ 154 (258)
T cd07584 80 YIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICYDMGFPEV 154 (258)
T ss_pred EEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEcCccChHH
Confidence 99999988653 689999999999999999999999986 36778999998 899999999999999999999999
Q ss_pred cccc--CCCCcccccc
Q 029167 167 FPSR--LDFPLPFLNR 180 (198)
Q Consensus 167 ~r~~--~~~~~~~~~~ 180 (198)
+|.+ +|++++++++
T Consensus 155 ~r~~~~~gadll~~ps 170 (258)
T cd07584 155 ARILTLKGAEVIFCPS 170 (258)
T ss_pred HHHHHHCCCcEEEECC
Confidence 9986 8999998654
No 16
>PLN02798 nitrilase
Probab=100.00 E-value=8.2e-34 Score=230.89 Aligned_cols=172 Identities=25% Similarity=0.331 Sum_probs=144.9
Q ss_pred CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCC-CCCccCcchhhhHHHHhcCCCCCChHHHHHHHH
Q 029167 4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL 82 (198)
Q Consensus 4 ~~~~~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~-~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~ 82 (198)
.|..+||||++|.+...+++.|++++++++++|.++|+|||||||+ .++|+...+ ..+.++..+ ++..+.++++
T Consensus 6 ~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~----~~~~~~~~~-~~~~~~l~~~ 80 (286)
T PLN02798 6 TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGE----SLAIAEPLD-GPIMQRYRSL 80 (286)
T ss_pred cccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchh----hhhhcccCC-CHHHHHHHHH
Confidence 3556799999999988899999999999999999999999999998 456765432 333344433 5789999999
Q ss_pred HHHhCCEEEEe-eeec--cCCeeEEEEEEEcCCCCeeeeeeeccCCCC-----CCCCccccccCCCCCeeeEEeCCceEE
Q 029167 83 AKELGVVMPVS-FFEE--ANNAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVGAWNNLNLN 154 (198)
Q Consensus 83 a~~~~i~iv~g-~~~~--~~~~~yNs~~~i~~~G~il~~y~K~~l~~~-----~~~~e~~~~~~G~~~~~~~~~~~~~ig 154 (198)
|+++++.|++| .+++ .++++||++++|+++|++++.|+|+||++. ..+.|..+|++|+. +.+|+++++|+|
T Consensus 81 A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~k~g 159 (286)
T PLN02798 81 ARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPVGRLG 159 (286)
T ss_pred HHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCCceEE
Confidence 99999999987 5555 457899999999999999999999999532 22357788999998 899999999999
Q ss_pred EeeeecccCCccccc---cCCCCccccccc
Q 029167 155 LICFFDLIFDDDFPS---RLDFPLPFLNRF 181 (198)
Q Consensus 155 ~~IC~d~~~pe~~r~---~~~~~~~~~~~~ 181 (198)
++||||.+||+.+|. ..|++++++++|
T Consensus 160 ~~IC~D~~fpe~~r~~a~~~Gadlil~ps~ 189 (286)
T PLN02798 160 LTVCYDLRFPELYQQLRFEHGAQVLLVPSA 189 (286)
T ss_pred EEEEEcccChHHHHHHHHhCCCcEEEECCc
Confidence 999999999999999 489999988765
No 17
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=2.3e-34 Score=231.02 Aligned_cols=164 Identities=22% Similarity=0.304 Sum_probs=140.1
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh--hhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ--REDFFQRAKPYKDHPTILKMQELAKEL 86 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~--~~~~~~~a~~~~~~~~~~~l~~~a~~~ 86 (198)
|||++|+++ ..|+++|++++.+++++|+++|+|||||||++++||.+.+. ...+... ..+.++.|.+.++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~ 75 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA-----AEEALEELAAATADL 75 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH-----HHHHHHHHHHhcccC
Confidence 699999998 78999999999999999999999999999999999976532 1111110 023445555555666
Q ss_pred CCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcc
Q 029167 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDD 166 (198)
Q Consensus 87 ~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~ 166 (198)
++++++|++++.++++||++++| ++|++++.|+|.||++++++.|..+|++|+. ..+|+++++|+|++||||.+||+.
T Consensus 76 ~i~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~fpe~ 153 (261)
T cd07570 76 DIAVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICEDLWVPDP 153 (261)
T ss_pred CcEEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeecccCCCCc
Confidence 99999999998889999999999 6999999999999999888889999999998 889999999999999999999999
Q ss_pred -cccc--CCCCcccccc
Q 029167 167 -FPSR--LDFPLPFLNR 180 (198)
Q Consensus 167 -~r~~--~~~~~~~~~~ 180 (198)
+|.+ .|++++++++
T Consensus 154 ~~r~~~~~ga~ll~~ps 170 (261)
T cd07570 154 PSAELALAGADLILNLS 170 (261)
T ss_pred hHHHHHHcCCcEEEEeC
Confidence 8886 8999998754
No 18
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=7.7e-34 Score=228.31 Aligned_cols=169 Identities=27% Similarity=0.294 Sum_probs=144.0
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCE
Q 029167 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (198)
Q Consensus 10 ~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~ 89 (198)
|||++|+++..++++|++++.+++++|.++|+|+|||||++++||.+.+.... ..+... .++..+.++++|++++++
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~--~~~~~~-~~~~~~~l~~~a~~~~i~ 77 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLA--LAEEEG-DGPTLQALSELAKEHGIW 77 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhh--hhcccc-CChHHHHHHHHHHHCCeE
Confidence 69999999988999999999999999999999999999999999876542111 012222 257889999999999999
Q ss_pred EEEe-eeeccC--CeeEEEEEEEcCCCCeeeeeeeccCCCC-----CCCCccccccCCCCCeeeEEeCCceEEEeeeecc
Q 029167 90 MPVS-FFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDL 161 (198)
Q Consensus 90 iv~g-~~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~~-----~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~ 161 (198)
+++| ++++.+ +++||++++++++|++++.|+|+||++. ..+.|..+|++|+. +.+|+++++|+|++||||.
T Consensus 78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~ 156 (265)
T cd07572 78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLGICYDL 156 (265)
T ss_pred EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceEEEEEEecc
Confidence 9987 556665 8999999999999999999999999532 13567889999998 8999999999999999999
Q ss_pred cCCcccccc--CCCCcccccccc
Q 029167 162 IFDDDFPSR--LDFPLPFLNRFS 182 (198)
Q Consensus 162 ~~pe~~r~~--~~~~~~~~~~~~ 182 (198)
+||+.+|.+ .|++++++++|.
T Consensus 157 ~~pe~~r~~~~~gadli~~p~~~ 179 (265)
T cd07572 157 RFPELARALARQGADILTVPAAF 179 (265)
T ss_pred CcHHHHHHHHHCCCCEEEECCCC
Confidence 999999986 899999987764
No 19
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=1.6e-33 Score=225.27 Aligned_cols=163 Identities=21% Similarity=0.281 Sum_probs=142.4
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhC
Q 029167 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (198)
Q Consensus 9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~ 87 (198)
||||++|+++ +.|++.|++++.+.+++|++ |+|||||||++++||.+.. .+.++... +..+++++++|++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~-----~~~~~~~~-~~~~~~l~~la~~~~ 73 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNA-----EALAEPMN-GPTLQWMKAQAKKKG 73 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccH-----HHhhcccC-ChHHHHHHHHHHHCC
Confidence 7999999999 69999999999999999987 9999999999999997543 12233333 688999999999999
Q ss_pred CEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167 88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF 167 (198)
Q Consensus 88 i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~ 167 (198)
+.+++|++++.++++||++++++++|++ ..|+|+||++++ .|..+|++|+. ..+|+++++|+|++||||.+|||++
T Consensus 74 i~i~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~~pe~~ 149 (252)
T cd07575 74 AAITGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVCYDLRFPVWS 149 (252)
T ss_pred eEEEEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEEeccCChHHH
Confidence 9999899888888999999999999985 599999998643 47788999997 8999999999999999999999999
Q ss_pred cccCCCCcccccc-cc
Q 029167 168 PSRLDFPLPFLNR-FS 182 (198)
Q Consensus 168 r~~~~~~~~~~~~-~~ 182 (198)
|.+.+++++++++ |.
T Consensus 150 r~~~~a~lil~~s~~~ 165 (252)
T cd07575 150 RNTNDYDLLLYVANWP 165 (252)
T ss_pred HhhcCCCEEEEeCCCC
Confidence 9987799998654 54
No 20
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.3e-33 Score=226.43 Aligned_cols=167 Identities=22% Similarity=0.229 Sum_probs=142.5
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhC
Q 029167 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (198)
Q Consensus 9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~ 87 (198)
+|||++|++. .+|.+.|++++.+++++|+++|+|||||||++++||...+. .+.....+..+ ++..+.++++|++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~-~~~~~~~~~~~-~~~~~~l~~~a~~~~ 78 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDR-AEIAPFVEPIP-GPTTARFAELAREHD 78 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCH-HHhhhhcccCC-CHHHHHHHHHHHHcC
Confidence 5899999999 68999999999999999999999999999999999986542 22333333333 578899999999999
Q ss_pred CEEEEeeeecc--CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCc
Q 029167 88 VVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDD 165 (198)
Q Consensus 88 i~iv~g~~~~~--~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe 165 (198)
+.+++|++++. ++++||++++|+++| +++.|+|.|+.. .|..+|++|+..+.+|+++++|+|++||||++|||
T Consensus 79 i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC~D~~fpe 153 (258)
T cd07578 79 CYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLICMDIHFFE 153 (258)
T ss_pred cEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEeeCCCchH
Confidence 99999998764 478999999999888 789999999854 46778999985478999999999999999999999
Q ss_pred ccccc--CCCCccccc-ccc
Q 029167 166 DFPSR--LDFPLPFLN-RFS 182 (198)
Q Consensus 166 ~~r~~--~~~~~~~~~-~~~ 182 (198)
++|.+ .|+++++++ +|.
T Consensus 154 ~~r~~~~~ga~ll~~ps~~~ 173 (258)
T cd07578 154 TARLLALGGADVICHISNWL 173 (258)
T ss_pred HHHHHHHcCCCEEEEcCCCC
Confidence 99995 899999864 353
No 21
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.5e-33 Score=227.28 Aligned_cols=165 Identities=29% Similarity=0.448 Sum_probs=142.2
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
|||++|+++ ..+.++|++++.+++++|.++|+|||||||++++||...+.. +....+.....++.++.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRD-EAFALAEEVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHH-HHHHhhccCCCCchHHHHHHHHHHcCc
Confidence 699999999 689999999999999999999999999999999998765421 222222222235688999999999999
Q ss_pred EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP 168 (198)
Q Consensus 89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r 168 (198)
++++|++++.++++||++++|+++|. ++.|+|.||++ .|..+|++|+..+++|+++++|+|++||||++||+++|
T Consensus 80 ~i~~G~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~fpe~~r 154 (268)
T cd07580 80 YIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGWFPETFR 154 (268)
T ss_pred EEEeecccccCCceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEECcccchHHHH
Confidence 99999998888899999999999885 79999999987 47789999997679999999999999999999999998
Q ss_pred cc--CCCCcccccc
Q 029167 169 SR--LDFPLPFLNR 180 (198)
Q Consensus 169 ~~--~~~~~~~~~~ 180 (198)
.+ +|++++++++
T Consensus 155 ~~~~~ga~li~~ps 168 (268)
T cd07580 155 LLALQGADIVCVPT 168 (268)
T ss_pred HHHHcCCCEEEEcC
Confidence 85 8999998643
No 22
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.5e-33 Score=226.39 Aligned_cols=162 Identities=24% Similarity=0.388 Sum_probs=142.6
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
|||++|+++ .++++.|++++.+++++|+++|+|+|||||++++||.+... ....+.. ..++.++.++++|+++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~---~~~~~~~-~~~~~~~~l~~~a~~~~~ 76 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRA---LSREAEV-PDGPSTQALSDLARRYGL 76 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcc---cchhccc-CCChHHHHHHHHHHHcCc
Confidence 699999999 78999999999999999999999999999999999986531 1111221 226788999999999999
Q ss_pred EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP 168 (198)
Q Consensus 89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r 168 (198)
.+++|++++.++++||++++|+++|. ++.|+|.||++ .|..+|++|+. +++|+++++|+|++||||.+||+++|
T Consensus 77 ~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~r 150 (261)
T cd07585 77 TILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILICYDNHFPENVR 150 (261)
T ss_pred EEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEEcCCcCcHHHH
Confidence 99999999888999999999999997 68999999987 47789999998 89999999999999999999999999
Q ss_pred cc--CCCCccccccc
Q 029167 169 SR--LDFPLPFLNRF 181 (198)
Q Consensus 169 ~~--~~~~~~~~~~~ 181 (198)
.+ .|+|++++|++
T Consensus 151 ~l~~~gadlil~p~~ 165 (261)
T cd07585 151 ATALLGAEILFAPHA 165 (261)
T ss_pred HHHHCCCCEEEECCc
Confidence 86 89999998754
No 23
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3e-33 Score=223.81 Aligned_cols=167 Identities=26% Similarity=0.408 Sum_probs=144.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEE
Q 029167 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (198)
Q Consensus 11 ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i 90 (198)
||++|++..+|+++|++++.+++++|+++|+|+|||||++++||...+. .+.+.+.... ++.++.++++|+++++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~--~~~~~~~~~~-~~~~~~l~~~a~~~~i~i 77 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLD--DYARVAEPLD-GPFVSALARLARELGITV 77 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchh--hHHhhhccCC-CHHHHHHHHHHHHcCeEE
Confidence 6899999989999999999999999999999999999999999976532 1233444443 578899999999999999
Q ss_pred EEeeeeccC-CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCC-eeeEEeCCceEEEeeeecccCCcccc
Q 029167 91 PVSFFEEAN-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-FKVGAWNNLNLNLICFFDLIFDDDFP 168 (198)
Q Consensus 91 v~g~~~~~~-~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~-~~~~~~~~~~ig~~IC~d~~~pe~~r 168 (198)
++|++++.+ +++||++++|+++|+++++|+|.||++...+.|..+|++|+.. ..++.++++|+|++||||.+||+++|
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D~~~pe~~~ 157 (255)
T cd07581 78 VAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRFPELAR 157 (255)
T ss_pred EEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEecccCHHHHH
Confidence 999998865 4899999999999999999999999876566788899999873 45778888999999999999999999
Q ss_pred cc--CCCCcccccc
Q 029167 169 SR--LDFPLPFLNR 180 (198)
Q Consensus 169 ~~--~~~~~~~~~~ 180 (198)
.+ +|++++++++
T Consensus 158 ~~~~~ga~lil~ps 171 (255)
T cd07581 158 ALALAGADVIVVPA 171 (255)
T ss_pred HHHHCCCcEEEECC
Confidence 85 8999998654
No 24
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=1.6e-33 Score=229.55 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=137.9
Q ss_pred cEEEEEeCCC-CCCH-------HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhh-HHH-----------Hhc-
Q 029167 9 VVVSALQFAC-TDDV-------STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE-DFF-----------QRA- 67 (198)
Q Consensus 9 ~~ia~~Q~~~-~~~~-------~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~-~~~-----------~~a- 67 (198)
+++|+||... +.+. ++|++++.+++++|+++|+|||||||++++||...+... .+. ..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 4789999999 5555 899999999999999999999999999999998654211 000 000
Q ss_pred -CCCCCChHHHHHHHHHHHhCCEEEEeeeecc-----------C-CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccc
Q 029167 68 -KPYKDHPTILKMQELAKELGVVMPVSFFEEA-----------N-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKF 134 (198)
Q Consensus 68 -~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~-----------~-~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~ 134 (198)
.....++.++.|+++|++++++|++|++++. + +++|||+++|+++|+++++|+|.||+ .|..
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~ 155 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPG 155 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----cccc
Confidence 0112257889999999999999999988763 2 36999999999999999999999996 3777
Q ss_pred cccCCCCCeeeEEeCCc-eEEEeeeecccCCcccccc--C-CCCcccccc-cc
Q 029167 135 YFNPGDTGFKVGAWNNL-NLNLICFFDLIFDDDFPSR--L-DFPLPFLNR-FS 182 (198)
Q Consensus 135 ~~~~G~~~~~~~~~~~~-~ig~~IC~d~~~pe~~r~~--~-~~~~~~~~~-~~ 182 (198)
+|.+|...+.+|+++++ |+|++||||++|||++|.+ . |++++++++ |.
T Consensus 156 ~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~ 208 (299)
T cd07567 156 FDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWF 208 (299)
T ss_pred ccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccC
Confidence 89999643789999975 9999999999999999996 6 999998654 53
No 25
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.7e-33 Score=223.93 Aligned_cols=162 Identities=30% Similarity=0.501 Sum_probs=140.8
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
|||++|.+. ..|++.|++++.+++++|. +|||||||++++||.+.. ...+.+.++....++.++.++++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTS-KEEVASLAESIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCC-HHHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence 699999999 6899999999999999883 999999999999998643 22344444433236889999999999999
Q ss_pred EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP 168 (198)
Q Consensus 89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r 168 (198)
++++|++++.++++||++++|+++| ++++|+|.||++ .|..+|++|+..+++|+++++|+|++||||.+|||++|
T Consensus 77 ~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~r 151 (259)
T cd07577 77 YIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMICFDWYFPEAAR 151 (259)
T ss_pred EEEecceeccCCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEEcCcccchHHH
Confidence 9999999988899999999999988 899999999976 47788999993389999999999999999999999999
Q ss_pred cc--CCCCcccccc
Q 029167 169 SR--LDFPLPFLNR 180 (198)
Q Consensus 169 ~~--~~~~~~~~~~ 180 (198)
.+ .|++++++++
T Consensus 152 ~~~~~Gadli~~ps 165 (259)
T cd07577 152 TLALKGADIIAHPA 165 (259)
T ss_pred HHHHcCCCEEEECC
Confidence 86 8999998654
No 26
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7e-33 Score=223.33 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=138.5
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
|||++|++. ..+++.|++++.+++++|.++|+|+|||||++++||.+.+. ..+.+.... .+.++.|++.++ ++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~---~~~~~~~~~-~~~~~~l~~~a~--~~ 74 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDL---VYEVAMHAD-DPRLQALAEASG--GI 74 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhh---hhhhhcccc-hHHHHHHHHHcC--CC
Confidence 699999998 68999999999999999999999999999999999986542 222232221 355556665552 89
Q ss_pred EEEEeeeecc-CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF 167 (198)
Q Consensus 89 ~iv~g~~~~~-~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~ 167 (198)
.+++|++++. ++++||++++| ++|+++++|+|.||++++.|.|..+|++|+. +++|+++++|+|++||||.+||++.
T Consensus 75 ~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~D~~fp~~~ 152 (269)
T cd07586 75 CVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICEDAWHPSLP 152 (269)
T ss_pred EEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEeccCCcHHH
Confidence 9999999886 48999999999 8999999999999988766778889999998 8999999999999999999999999
Q ss_pred ccc--CCCCcccccc
Q 029167 168 PSR--LDFPLPFLNR 180 (198)
Q Consensus 168 r~~--~~~~~~~~~~ 180 (198)
|.+ .|++++++|+
T Consensus 153 ~~~~~~ga~lil~ps 167 (269)
T cd07586 153 YLLALDGADVIFIPA 167 (269)
T ss_pred HHHHHCCCCEEEEeC
Confidence 885 8999998654
No 27
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=222.38 Aligned_cols=170 Identities=32% Similarity=0.446 Sum_probs=142.4
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (198)
Q Consensus 8 ~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~ 86 (198)
+||||++|++. ..|...|++++.+++++|+++|+|||||||++++||.+.+ ..+.+.+.....++.++.++++++++
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~ 79 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED--DLFLEEAAAEAGEETLEFLAALAEEG 79 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc--HHHHHhhhhccCChHHHHHHHHHHhC
Confidence 58999999998 8999999999999999999999999999999999999874 22333333334478999999999966
Q ss_pred CCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcc
Q 029167 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDD 166 (198)
Q Consensus 87 ~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~ 166 (198)
++.++.|...... ..||++++++++|++++.|+|.||++. .+.|+.+|.+|+....+|+++++|+|+.||||.+|||+
T Consensus 80 ~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D~~fPe~ 157 (274)
T COG0388 80 GVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYDLRFPEL 157 (274)
T ss_pred CeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEeeccCHHH
Confidence 6666655443333 889999999899999999999999986 56788999999983369999999999999999999998
Q ss_pred cccc---CCCCccccccc
Q 029167 167 FPSR---LDFPLPFLNRF 181 (198)
Q Consensus 167 ~r~~---~~~~~~~~~~~ 181 (198)
+|.+ .|++++++|+.
T Consensus 158 ~~~~~a~~Gaeii~~p~a 175 (274)
T COG0388 158 ARRLLALGGAELLLVPAA 175 (274)
T ss_pred HHHHHHhcCCeEEEEcCC
Confidence 8863 78999986543
No 28
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=2.1e-32 Score=218.11 Aligned_cols=166 Identities=34% Similarity=0.524 Sum_probs=143.9
Q ss_pred EEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCE
Q 029167 11 VSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (198)
Q Consensus 11 ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~ 89 (198)
||++|+++ ..+.++|++++.+.+++|.++|+|+|||||++++||......... ..+... .....+.++++|++++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~-~~~~~~-~~~~~~~l~~~a~~~~i~ 78 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL-DLAEEL-DGPTLEALAELAKELGIY 78 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhh-hhcccC-CchHHHHHHHHHHHhCeE
Confidence 68999999 699999999999999999999999999999999998765421110 112222 257899999999999999
Q ss_pred EEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccccc
Q 029167 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPS 169 (198)
Q Consensus 90 iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r~ 169 (198)
+++|++++.++++||++++++++|+++.+|+|.||++ +.|..+|++|+. ..+|+++++|+|++||+|.+||+.+|.
T Consensus 79 ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d~~~~~~~~~ 154 (253)
T cd07197 79 IVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLICYDLRFPELARE 154 (253)
T ss_pred EEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEEecCCCcHHHHH
Confidence 9999999888899999999999999999999999998 357788999998 899999999999999999999999887
Q ss_pred c--CCCCcccccccc
Q 029167 170 R--LDFPLPFLNRFS 182 (198)
Q Consensus 170 ~--~~~~~~~~~~~~ 182 (198)
+ +|+|+++++++.
T Consensus 155 ~~~~g~dli~~ps~~ 169 (253)
T cd07197 155 LALKGADIILVPAAW 169 (253)
T ss_pred HHHCCCcEEEECCcC
Confidence 5 889999876543
No 29
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=3.3e-32 Score=221.85 Aligned_cols=164 Identities=22% Similarity=0.189 Sum_probs=138.1
Q ss_pred cEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHH
Q 029167 9 VVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (198)
Q Consensus 9 ~~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~~--~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~ 81 (198)
++||++|+++ ..+++.|++++.+++++|++ +|+|||||||++++||.... ....+.++..+ ++.++.+++
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~--~~~~~~a~~~~-~~~~~~l~~ 77 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDK--WTMDETACTVP-GPETDIFAE 77 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCc--chhhhhccCCC-ChhHHHHHH
Confidence 4799999997 47899999999999999986 59999999999999987532 12334454444 688999999
Q ss_pred HHHHhCCEEEEeeeeccC---CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeC-CceEEEee
Q 029167 82 LAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWN-NLNLNLIC 157 (198)
Q Consensus 82 ~a~~~~i~iv~g~~~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~~I 157 (198)
+|+++++.+++|+.++.+ +++||++++|+++|+++++|+|.||.. +...|.+|+...++|++. |.|+|++|
T Consensus 78 lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~~v~~~~~g~riG~~I 152 (291)
T cd07565 78 ACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGTPVCEGPKGSKIALII 152 (291)
T ss_pred HHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCceeeECCCCCEEEEEE
Confidence 999999999999887753 689999999999999999999999853 223578998657888885 67999999
Q ss_pred eecccCCcccccc--CCCCcccccc
Q 029167 158 FFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 158 C~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
|||.+|||++|.+ +||+++++++
T Consensus 153 CyD~~fPe~~r~la~~GAdill~ps 177 (291)
T cd07565 153 CHDGMYPEIARECAYKGAELIIRIQ 177 (291)
T ss_pred EcCCCCcHHHHHHHHCCCeEEEECC
Confidence 9999999999995 8999999875
No 30
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=2e-32 Score=244.64 Aligned_cols=171 Identities=20% Similarity=0.176 Sum_probs=145.6
Q ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhh--hHHHHhcCCCCCChHHHHHHHHH
Q 029167 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQELA 83 (198)
Q Consensus 7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~--~~~~~~a~~~~~~~~~~~l~~~a 83 (198)
+.||||++|+++ ..|++.|++++.+++++|+++|+|||||||++++||.+.+.. ..+.+. ..+.++.|++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~-----~~~~l~~L~~~a 85 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA-----VEDALATLVEAS 85 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHh-----hHHHHHHHHHHH
Confidence 469999999999 699999999999999999999999999999999999987641 122211 136788999999
Q ss_pred HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCe----------------eeEE
Q 029167 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF----------------KVGA 147 (198)
Q Consensus 84 ~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~----------------~~~~ 147 (198)
+++++.+++|++++.++++||++++|+ +|++++.|+|.||+.++.|.|.++|++|+... .+|+
T Consensus 86 ~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf~ 164 (679)
T PRK02628 86 ADLDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLFE 164 (679)
T ss_pred hhcCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeEE
Confidence 999999999999888889999999996 79999999999999988889999999998621 2465
Q ss_pred e---CCceEEEeeeecccCCccc-ccc--CCCCccccccccc
Q 029167 148 W---NNLNLNLICFFDLIFDDDF-PSR--LDFPLPFLNRFSK 183 (198)
Q Consensus 148 ~---~~~~ig~~IC~d~~~pe~~-r~~--~~~~~~~~~~~~~ 183 (198)
+ ++.|+|+.||||+||||.. +.+ .||+++++++.+.
T Consensus 165 ~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp 206 (679)
T PRK02628 165 AEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASN 206 (679)
T ss_pred ecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCC
Confidence 5 6899999999999999985 543 8999999755443
No 31
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=2e-32 Score=221.05 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=139.7
Q ss_pred cEEEEEeCCC-CC------CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHH
Q 029167 9 VVVSALQFAC-TD------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (198)
Q Consensus 9 ~~ia~~Q~~~-~~------~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~ 81 (198)
+|||++|+++ .. +.++|++++.+++++|+++|+|+|||||++++||... .++.++.+++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~--------------~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQR--------------DPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccccc--------------CHHHHHHHHH
Confidence 5899999998 33 7899999999999999999999999999999988521 2578899999
Q ss_pred HHHHhCCEEEEeeeeccC--CeeEEEEEEEcCCCCeeeeeeeccCCCCCCC---------------CccccccCCCCCee
Q 029167 82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGY---------------QEKFYFNPGDTGFK 144 (198)
Q Consensus 82 ~a~~~~i~iv~g~~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~---------------~e~~~~~~G~~~~~ 144 (198)
+|+++++++++|++++.+ +++||++++|+++|+++++|+|.||+++.++ .|..+|.+|+. .+
T Consensus 67 ~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~~ 145 (270)
T cd07571 67 AARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-PQ 145 (270)
T ss_pred HHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-CC
Confidence 999999999999998765 4899999999999999999999999987653 35678999998 89
Q ss_pred eEEeCC-ceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167 145 VGAWNN-LNLNLICFFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 145 ~~~~~~-~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
+|++++ +|+|++||||.+|||.+|.+ +|++++++++
T Consensus 146 vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps 184 (270)
T cd07571 146 PLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNIT 184 (270)
T ss_pred ccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcC
Confidence 999999 99999999999999999986 7999998765
No 32
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.2e-32 Score=221.73 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=137.9
Q ss_pred cEEEEEeCCC-C-CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCc---chhh--hHHHHhcCCCCCChHHHHHHH
Q 029167 9 VVVSALQFAC-T-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC---QAQR--EDFFQRAKPYKDHPTILKMQE 81 (198)
Q Consensus 9 ~~ia~~Q~~~-~-~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~---~~~~--~~~~~~a~~~~~~~~~~~l~~ 81 (198)
||||++|+++ . .+.++|++++++++++|+++|+|||||||++++||.. .... .+........ .+..++.+++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 79 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAAL-TPDYVALFSE 79 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHH-HHHHHHHHHH
Confidence 7999999998 3 7999999999999999999999999999999987521 1110 1111111111 1578899999
Q ss_pred HHHHhCCEEEEee-eeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeec
Q 029167 82 LAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFD 160 (198)
Q Consensus 82 ~a~~~~i~iv~g~-~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d 160 (198)
+|++++++|++|. +++.++++||++++++++|.+ ++|+|.||++++ .+...+.+|+. +.+|+++++|+|++||||
T Consensus 80 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~IC~D 155 (280)
T cd07574 80 LARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILICYD 155 (280)
T ss_pred HHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEEecc
Confidence 9999999999985 566788999999999999987 999999998853 23345789998 899999999999999999
Q ss_pred ccCCcccccc--CCCCccccccc
Q 029167 161 LIFDDDFPSR--LDFPLPFLNRF 181 (198)
Q Consensus 161 ~~~pe~~r~~--~~~~~~~~~~~ 181 (198)
.+||+++|.+ +|+++++++++
T Consensus 156 ~~fpe~~r~l~~~ga~ii~~ps~ 178 (280)
T cd07574 156 SEFPELARALAEAGADLLLVPSC 178 (280)
T ss_pred cccHHHHHHHHHcCCCEEEECCc
Confidence 9999999986 89999998764
No 33
>PRK13981 NAD synthetase; Provisional
Probab=99.98 E-value=8.2e-32 Score=236.13 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=143.9
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh--hhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ--REDFFQRAKPYKDHPTILKMQELAKE 85 (198)
Q Consensus 9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~--~~~~~~~a~~~~~~~~~~~l~~~a~~ 85 (198)
||||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||.+.+. .+.+. ....+.+++++++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~--------~~~~~~l~~La~~ 72 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL--------AACEAALERLAAA 72 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH--------HHHHHHHHHHHHh
Confidence 7999999999 79999999999999999999999999999999999987642 11111 1334567777776
Q ss_pred --hCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccC
Q 029167 86 --LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIF 163 (198)
Q Consensus 86 --~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~ 163 (198)
+++.+++|++++.++++||++++|+ +|++++.|+|+||++++.|.|..+|++|+. ..+|+++++|+|++||+|.+|
T Consensus 73 ~~~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~IC~D~~~ 150 (540)
T PRK13981 73 TAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVPICEDIWN 150 (540)
T ss_pred cCCCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEEEehhhcC
Confidence 7999999999888889999999997 899999999999999988899999999998 889999999999999999999
Q ss_pred Ccccccc--CCCCcccccccc
Q 029167 164 DDDFPSR--LDFPLPFLNRFS 182 (198)
Q Consensus 164 pe~~r~~--~~~~~~~~~~~~ 182 (198)
|+++|.+ .|++++++++.+
T Consensus 151 pe~~r~la~~Gadlil~psa~ 171 (540)
T PRK13981 151 PEPAETLAEAGAELLLVPNAS 171 (540)
T ss_pred CcHHHHHHHCCCcEEEEcCCC
Confidence 9999886 899999875543
No 34
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.98 E-value=3.2e-32 Score=243.23 Aligned_cols=174 Identities=13% Similarity=0.051 Sum_probs=140.7
Q ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (198)
Q Consensus 7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~ 85 (198)
+.||||++|++. .+|++.|.+++.+.+++|+++|||||||||++++||.+.+. +.+.+......+.+..|.+.+++
T Consensus 2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl---~~~~~~~~~~~~~L~~La~~a~~ 78 (700)
T PLN02339 2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDH---FLELDTVTHSWECLAEILVGDLT 78 (700)
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHH---hhChhHHHHHHHHHHHHHhhccc
Confidence 479999999999 58999999999999999999999999999999999998653 11111100002334444444456
Q ss_pred hCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCC-----------------------
Q 029167 86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG----------------------- 142 (198)
Q Consensus 86 ~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~----------------------- 142 (198)
+++.+++|+++..++++||+++++ .+|++++.|+|.||++++.|.|.++|++|+..
T Consensus 79 ~~i~vvvG~p~~~~~~lYN~a~vi-~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpf 157 (700)
T PLN02339 79 DGILCDIGMPVIHGGVRYNCRVFC-LNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPF 157 (700)
T ss_pred CCeEEEEeeeEEECCeEEEEEEEE-eCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceecc
Confidence 799999999988788999999999 58999999999999999889999999998621
Q ss_pred -eeeEEeCCceEEEeeeecccCCccccc-c--CCCCcccccccccc
Q 029167 143 -FKVGAWNNLNLNLICFFDLIFDDDFPS-R--LDFPLPFLNRFSKL 184 (198)
Q Consensus 143 -~~~~~~~~~~ig~~IC~d~~~pe~~r~-~--~~~~~~~~~~~~~~ 184 (198)
..+|++++.++|+.||||+|||+..+. + .||+++++++.+..
T Consensus 158 g~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~ 203 (700)
T PLN02339 158 GDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHH 203 (700)
T ss_pred CcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChh
Confidence 124456688999999999999999885 4 89999998776544
No 35
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.98 E-value=1.1e-31 Score=218.89 Aligned_cols=171 Identities=22% Similarity=0.234 Sum_probs=133.2
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHh----CCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHH
Q 029167 10 VVSALQFAC-TDDVSTNLATAERLVRAAHG----KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (198)
Q Consensus 10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~----~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~ 84 (198)
|||++|+++ ..|+++|++++.+++++|.+ +|+|||||||++++||...+. .+....++....++..+.++++|+
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~-~~~~~~ae~~~~g~~~~~l~~lAk 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSL-EHIKPYLEPTTSGPSFEWAREVAK 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccH-HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 699999998 58999999999999999988 899999999999999976432 122222332223688899999999
Q ss_pred HhCCEEEEeeeeccC---CeeEEEEEEEcCCCCeeeeeeeccCCCCCC---CCcc-cccc------CCCCCee-eEEeCC
Q 029167 85 ELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG---YQEK-FYFN------PGDTGFK-VGAWNN 150 (198)
Q Consensus 85 ~~~i~iv~g~~~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~~~~---~~e~-~~~~------~G~~~~~-~~~~~~ 150 (198)
+++++|++|++++.+ +++|||+++|+++|+++++|+|.||++..+ +.|. ..+. +|+.... .+...+
T Consensus 80 ~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~~ 159 (295)
T cd07566 80 KFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVT 159 (295)
T ss_pred hcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccccccCCc
Confidence 999999999988754 489999999999999999999999986421 1122 1222 6765222 233358
Q ss_pred ceEEEeeeeccc---C--C----cccccc--CCCCccccc-cc
Q 029167 151 LNLNLICFFDLI---F--D----DDFPSR--LDFPLPFLN-RF 181 (198)
Q Consensus 151 ~~ig~~IC~d~~---~--p----e~~r~~--~~~~~~~~~-~~ 181 (198)
+|+|+.||||++ | | |++|.+ .||+++++| .|
T Consensus 160 ~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw 202 (295)
T cd07566 160 LKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAW 202 (295)
T ss_pred ceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechh
Confidence 899999999996 8 6 999985 899999864 44
No 36
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.97 E-value=4e-31 Score=215.85 Aligned_cols=170 Identities=22% Similarity=0.249 Sum_probs=137.5
Q ss_pred EEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh-----CCCcEEEeCCCCCCccCcchhhh--HHHHhcCCCCCChHHH
Q 029167 10 VVSALQFAC-----TDDVSTNLATAERLVRAAHG-----KGANIILIQELFEGYYFCQAQRE--DFFQRAKPYKDHPTIL 77 (198)
Q Consensus 10 ~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~~-----~g~dlvv~PE~~~~g~~~~~~~~--~~~~~a~~~~~~~~~~ 77 (198)
+++++|+.. ..|++.|++++.+++++|++ +|+|||||||++++||.+.+... .+.+.++..+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~-~~~~~ 80 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIP-GPETE 80 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCC-CHHHH
Confidence 578889888 27899999999999999987 47999999999999998754311 1345555554 68999
Q ss_pred HHHHHHHHhCCEEEEeeeeccC---CeeEEEEEEEcCCCCeeeeeeeccCCCCCC-------CCc-cccccCC-CCCeee
Q 029167 78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG-------YQE-KFYFNPG-DTGFKV 145 (198)
Q Consensus 78 ~l~~~a~~~~i~iv~g~~~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~~~~-------~~e-~~~~~~G-~~~~~~ 145 (198)
.|+++|++++++|++|..++.+ +++||++++|+++|++++.|+|.||+...+ +.+ ..++.+| ...+++
T Consensus 81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v 160 (294)
T cd07582 81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPV 160 (294)
T ss_pred HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCccccccee
Confidence 9999999999999999887653 689999999999999999999999975311 111 1234555 333689
Q ss_pred EEeCCceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167 146 GAWNNLNLNLICFFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 146 ~~~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
++++++|+|++||||.+|||.+|.+ .|++++++++
T Consensus 161 ~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~ps 197 (294)
T cd07582 161 ADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSS 197 (294)
T ss_pred ecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcC
Confidence 9999999999999999999999985 8999998654
No 37
>PRK13287 amiF formamidase; Provisional
Probab=99.97 E-value=3e-30 Score=213.56 Aligned_cols=167 Identities=19% Similarity=0.175 Sum_probs=137.7
Q ss_pred CCccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHhC--CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHH
Q 029167 6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (198)
Q Consensus 6 ~~~~~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~~~--g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~ 78 (198)
.+++|||++|+++ ..++++|++++.+++++|++. |+|||||||++++||....+. ..+.+...+ ++.++.
T Consensus 11 ~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~--~~~~a~~~~-g~~~~~ 87 (333)
T PRK13287 11 IEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT--TEEFLCTVD-GPEVDA 87 (333)
T ss_pred CCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc--hhhhcccCC-CHHHHH
Confidence 3679999999997 378999999999999999864 899999999999999764321 123344443 678999
Q ss_pred HHHHHHHhCCEEEEeeeecc-CC-eeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeC-CceEEE
Q 029167 79 MQELAKELGVVMPVSFFEEA-NN-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWN-NLNLNL 155 (198)
Q Consensus 79 l~~~a~~~~i~iv~g~~~~~-~~-~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~ 155 (198)
++++|+++++++++|..++. ++ ++|||+++|+++|+++++|+|.||.. ....|++|+...++|+++ |.|+|+
T Consensus 88 l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~ 162 (333)
T PRK13287 88 FAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAV 162 (333)
T ss_pred HHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEE
Confidence 99999999999999987764 33 39999999999999999999999742 234578998437899986 569999
Q ss_pred eeeecccCCcccccc--CCCCcccccc
Q 029167 156 ICFFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 156 ~IC~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
+||||.+|||++|.+ +||+++++++
T Consensus 163 ~ICyD~~fPe~~R~~a~~GAeill~~s 189 (333)
T PRK13287 163 CICHDGMFPEMAREAAYKGANVMIRIS 189 (333)
T ss_pred EEEecccchHHHHHHHHCCCeEEEECC
Confidence 999999999999995 8999998765
No 38
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=99.97 E-value=2.3e-30 Score=214.79 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=136.0
Q ss_pred CCccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHH--hCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHH
Q 029167 6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (198)
Q Consensus 6 ~~~~~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~--~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~ 78 (198)
...++||++|.+. ..++.+|++++.+.+++|+ ..|+|||||||++++||.... .++.+.+..++ ++..+.
T Consensus 10 ~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~--~~~~~~a~~i~-g~~~~~ 86 (345)
T PRK13286 10 NDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR--QEMYETASTIP-GEETAI 86 (345)
T ss_pred CCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh--HHHHHhcccCC-CHHHHH
Confidence 4569999999985 3678999999999999987 458999999999999965432 23455566555 688899
Q ss_pred HHHHHHHhCCEEEEeee-ec----cCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeC-Cce
Q 029167 79 MQELAKELGVVMPVSFF-EE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWN-NLN 152 (198)
Q Consensus 79 l~~~a~~~~i~iv~g~~-~~----~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ 152 (198)
++++|+++++++++|.. +. .++++||++++|+++|+++++|+|.|++. +...|.+|+. ..+|+++ |.|
T Consensus 87 l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~k 160 (345)
T PRK13286 87 FAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGLK 160 (345)
T ss_pred HHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCcE
Confidence 99999999999988766 33 13569999999999999999999999754 3356789998 7898986 569
Q ss_pred EEEeeeecccCCcccccc--CCCCcccccc
Q 029167 153 LNLICFFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 153 ig~~IC~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
+|++||||.+|||++|.+ .||+++++++
T Consensus 161 iG~lIC~D~~fPE~~R~la~~GAelii~ps 190 (345)
T PRK13286 161 ISLIICDDGNYPEIWRDCAMKGAELIVRCQ 190 (345)
T ss_pred EEEEEEecccChHHHHHHHHcCCeEEEEcc
Confidence 999999999999988885 8888887643
No 39
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.96 E-value=2.9e-29 Score=212.33 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=134.0
Q ss_pred CccEEEEEeCCCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHH
Q 029167 7 REVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (198)
Q Consensus 7 ~~~~ia~~Q~~~~~-------~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l 79 (198)
+++|||++|+++.. +.++|++++.+++++|.+ ++|+|||||++++++.... .....+.+
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l 223 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL 223 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence 56999999999932 357889999999988876 8999999999998764211 12367889
Q ss_pred HHHHHHhCCEEEEeeeeccCC---eeEEEEEEEcCCCCeeeeeeeccCCCCCCCCc----------------cccccCCC
Q 029167 80 QELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE----------------KFYFNPGD 140 (198)
Q Consensus 80 ~~~a~~~~i~iv~g~~~~~~~---~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e----------------~~~~~~G~ 140 (198)
+++++++++.+++|.++..++ ++|||+++++++|+++.+|+|+||+|++|+.. ...|++|+
T Consensus 224 ~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~ 303 (391)
T TIGR00546 224 KLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGP 303 (391)
T ss_pred HHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCC
Confidence 999999999999999876543 79999999999999999999999999877532 24688998
Q ss_pred CCeeeEEeCCceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167 141 TGFKVGAWNNLNLNLICFFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 141 ~~~~~~~~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
+ .++++++++|+|++||||.+|||+.|.+ +|+|++++++
T Consensus 304 ~-~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~s 344 (391)
T TIGR00546 304 G-PQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLT 344 (391)
T ss_pred C-CCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEec
Confidence 8 8999999999999999999999999995 7899998644
No 40
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.95 E-value=3.9e-27 Score=182.45 Aligned_cols=172 Identities=23% Similarity=0.275 Sum_probs=148.1
Q ss_pred ccEEEEEeCCC----CCC----HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccC-cchhhhHHHHhcCCCCCChHHHH
Q 029167 8 EVVVSALQFAC----TDD----VSTNLATAERLVRAAHGKGANIILIQELFEGYYF-CQAQREDFFQRAKPYKDHPTILK 78 (198)
Q Consensus 8 ~~~ia~~Q~~~----~~~----~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~-~~~~~~~~~~~a~~~~~~~~~~~ 78 (198)
.+||+++|-.+ ... .+...+++...++.|+.+|+++|+|.|.|..+|. |...+-.|.+++++++.+++.+.
T Consensus 73 ~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~f 152 (387)
T KOG0808|consen 73 VVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTKF 152 (387)
T ss_pred EEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHHH
Confidence 48999999988 233 3455567777888888999999999999998874 56556678999999999999999
Q ss_pred HHHHHHHhCCEEEEeeeecc---CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEE
Q 029167 79 MQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNL 155 (198)
Q Consensus 79 l~~~a~~~~i~iv~g~~~~~---~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~ 155 (198)
++++|+++++.|+....+++ ++.++|++++|+.+|.++++.+|.|.|..+.|.|+.+|..|+.+.++|++..+||++
T Consensus 153 lqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgriav 232 (387)
T KOG0808|consen 153 LQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIAV 232 (387)
T ss_pred HHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEEE
Confidence 99999999999999988874 578999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCcccccc--CCCCccccc
Q 029167 156 ICFFDLIFDDDFPSR--LDFPLPFLN 179 (198)
Q Consensus 156 ~IC~d~~~pe~~r~~--~~~~~~~~~ 179 (198)
.|||--++|..+-.+ +||+++|+|
T Consensus 233 nicygrhhplnwlmy~lngaeiifnp 258 (387)
T KOG0808|consen 233 NICYGRHHPLNWLMYGLNGAEIIFNP 258 (387)
T ss_pred EeeccCCCchhhhhhhccCceEEECC
Confidence 999999999944442 455555543
No 41
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=183.20 Aligned_cols=166 Identities=23% Similarity=0.308 Sum_probs=141.3
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 9 ~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
-+||++|...+.|...|++...+++.+|+.+||++|.|||.+- |.... +.+-.+.++.++ ++..+..+++|++++|
T Consensus 16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--Fi~~n-~~esi~Lae~l~-~k~m~~y~elar~~nI 91 (295)
T KOG0807|consen 16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFD--FIGQN-PLESIELAEPLD-GKFMEQYRELARSHNI 91 (295)
T ss_pred ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--hhcCC-cccceecccccC-hHHHHHHHHHHHhcCe
Confidence 7899999999999999999999999999999999999999764 22211 223334566654 8999999999999999
Q ss_pred EEEEeee-eccC---CeeEEEEEEEcCCCCeeeeeeeccCCC-----CCCCCccccccCCCCCeeeEEeCCceEEEeeee
Q 029167 89 VMPVSFF-EEAN---NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFF 159 (198)
Q Consensus 89 ~iv~g~~-~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~ 159 (198)
++.+|-. ++.+ .+++|+.++|+.+|+++..|+|.||++ .+.+.|+....||+...++++++-+|+|..|||
T Consensus 92 wlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaICY 171 (295)
T KOG0807|consen 92 WLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAICY 171 (295)
T ss_pred eEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeeee
Confidence 9988655 4433 689999999999999999999999953 455789999999999778899999999999999
Q ss_pred cccCCcccccc--CCCCcccc
Q 029167 160 DLIFDDDFPSR--LDFPLPFL 178 (198)
Q Consensus 160 d~~~pe~~r~~--~~~~~~~~ 178 (198)
|++|||++..+ .||+++-.
T Consensus 172 DiRFpE~sl~LR~~gA~iLty 192 (295)
T KOG0807|consen 172 DIRFPELSLKLRKMGAQILTY 192 (295)
T ss_pred eccCchHHHHHHHcCCcEEec
Confidence 99999999986 89998854
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.95 E-value=3.8e-27 Score=205.32 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=129.4
Q ss_pred CccEEEEEeCCCC-------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHH
Q 029167 7 REVVVSALQFACT-------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (198)
Q Consensus 7 ~~~~ia~~Q~~~~-------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l 79 (198)
+++|||++|+++. .+.++|++++.+.++++ ++++|+|||||.+++++. .+ ..++..+.+
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~------------~~~~~~~~l 283 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-ED------------LPQAFLKAL 283 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-cc------------ccHHHHHHH
Confidence 4699999999993 24567888888888854 568999999999987652 11 013566789
Q ss_pred HHHHHHhCCEEEEeeeeccC---C-eeEEEEEEEcCCCCeeeeeeeccCCCCCCCCc---------------cccccCCC
Q 029167 80 QELAKELGVVMPVSFFEEAN---N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNPGD 140 (198)
Q Consensus 80 ~~~a~~~~i~iv~g~~~~~~---~-~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e---------------~~~~~~G~ 140 (198)
+++++++++++++|.+++.+ + ++||+++++++ |+++.+|+|+||+|+++|.. ...|++|+
T Consensus 284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~ 362 (505)
T PRK00302 284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP 362 (505)
T ss_pred HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence 99999999999999887543 3 69999999988 88899999999999877532 12689998
Q ss_pred CCeeeEEeCCceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167 141 TGFKVGAWNNLNLNLICFFDLIFDDDFPSR--LDFPLPFLNR 180 (198)
Q Consensus 141 ~~~~~~~~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~ 180 (198)
...++++++++|+|++||||.+|||..|++ +|+|++++++
T Consensus 363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~s 404 (505)
T PRK00302 363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNIS 404 (505)
T ss_pred CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEcc
Confidence 438899999999999999999999999996 7899998643
No 43
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.94 E-value=1.6e-26 Score=196.42 Aligned_cols=152 Identities=11% Similarity=0.115 Sum_probs=124.7
Q ss_pred cEEEEEeCCCCCC-------HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHH
Q 029167 9 VVVSALQFACTDD-------VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (198)
Q Consensus 9 ~~ia~~Q~~~~~~-------~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~ 81 (198)
.+|+++|+|+.++ .+++.++..+++++|.+.++|+|||||++++.+... .+...+.+++
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence 4999999999433 357888999999988888999999999998754311 1245566777
Q ss_pred HHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCC----------------CccccccCCCCCeee
Q 029167 82 LAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY----------------QEKFYFNPGDTGFKV 145 (198)
Q Consensus 82 ~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~----------------~e~~~~~~G~~~~~~ 145 (198)
.+ .++.+++|.+..+++++|||++++++ |+ +.+|+|+||+|++++ .+...|++|+. .++
T Consensus 261 ~~--~~~~ii~G~~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~ 335 (418)
T PRK12291 261 LS--HKITIITGALRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSD 335 (418)
T ss_pred hc--cCCcEEEeeeeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-Ccc
Confidence 64 57999999988777789999999974 87 789999999998763 34457999988 889
Q ss_pred EEeCCceEEEeeeecccCCccccccCCCCcccc---ccc
Q 029167 146 GAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFL---NRF 181 (198)
Q Consensus 146 ~~~~~~~ig~~IC~d~~~pe~~r~~~~~~~~~~---~~~ 181 (198)
+++++.|+|++||||.+|||+.| +|++++++ +.|
T Consensus 336 ~~~~g~~ig~lICYE~~Fpel~r--~ga~~Lv~iSNdaW 372 (418)
T PRK12291 336 FTLDGVKFRNAICYEATSEELYE--GNPKIVIAISNNAW 372 (418)
T ss_pred eeeCCeEEEEEEeeeecchHhhc--cCCCEEEEeccccc
Confidence 99999999999999999999998 89999875 447
No 44
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.94 E-value=6e-27 Score=186.47 Aligned_cols=172 Identities=23% Similarity=0.272 Sum_probs=147.8
Q ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCC----CChHHHHHHH
Q 029167 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYK----DHPTILKMQE 81 (198)
Q Consensus 7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~----~~~~~~~l~~ 81 (198)
.++++|++|... ..+...|+..+++.+++|+++|+++|||||.++.||...+. +...++... .++....+++
T Consensus 12 ~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~s---f~py~E~i~~~~~~~ps~~~ls~ 88 (298)
T KOG0806|consen 12 PNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTES---FYPYLEDIPDPGCRDPSRQGLSE 88 (298)
T ss_pred cccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhcccccccccc---ccchhhhCCCcccCChhHHHhHH
Confidence 468999999999 56899999999999999999999999999999999988421 333333333 3689999999
Q ss_pred HHHHhCCEEEEeeeeccC--CeeEEEEEEEcCCCCeeeeeeeccCCCCC-----CCCccccccCCCCCeeeEEeCCceEE
Q 029167 82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGP-----GYQEKFYFNPGDTGFKVGAWNNLNLN 154 (198)
Q Consensus 82 ~a~~~~i~iv~g~~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~~~-----~~~e~~~~~~G~~~~~~~~~~~~~ig 154 (198)
+|++++++++.|.++... ++.||++.+++++|+.++.|+|.||++.. -|.|...|.+|.. +.++....+|||
T Consensus 89 va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~gkfG 167 (298)
T KOG0806|consen 89 VAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYGKFG 167 (298)
T ss_pred HHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCCceE
Confidence 999999999999887654 89999999999999999999999998642 2567788999999 899999999999
Q ss_pred EeeeecccCCcccccc--CCCCcccc-cccc
Q 029167 155 LICFFDLIFDDDFPSR--LDFPLPFL-NRFS 182 (198)
Q Consensus 155 ~~IC~d~~~pe~~r~~--~~~~~~~~-~~~~ 182 (198)
+.||||++|+|+++.+ .|+++++. ..|-
T Consensus 168 i~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~ 198 (298)
T KOG0806|consen 168 IFICFDIRFYDPAMILVKDGADLIVYPTAWN 198 (298)
T ss_pred EEEEecccccchHHHHHHcCCcEEEecchHh
Confidence 9999999999999996 88998874 4455
No 45
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.90 E-value=8e-23 Score=157.37 Aligned_cols=159 Identities=23% Similarity=0.263 Sum_probs=135.1
Q ss_pred CCCccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh------------hhHH---HHhcC
Q 029167 5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ------------REDF---FQRAK 68 (198)
Q Consensus 5 ~~~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~------------~~~~---~~~a~ 68 (198)
++.+.||+++|... ..|....++++++.+.+|++.|++||||||.++.||+-+.. ++++ ...|-
T Consensus 14 ~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AI 93 (337)
T KOG0805|consen 14 SSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAI 93 (337)
T ss_pred cccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhh
Confidence 45679999999999 67888899999999999999999999999999999976531 3333 33444
Q ss_pred CCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCcccccc--CCCCCeeeE
Q 029167 69 PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFN--PGDTGFKVG 146 (198)
Q Consensus 69 ~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~--~G~~~~~~~ 146 (198)
..+ ++..++|.++|+++++++++|..++++..+|.++++|+|+|..++.+||..+.. .|+-.|- .|+. .|+|
T Consensus 94 ev~-gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGST-iPV~ 167 (337)
T KOG0805|consen 94 EVP-GPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGST-IPVY 167 (337)
T ss_pred cCC-ChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccch----hhheeeccCCCcc-ccee
Confidence 444 689999999999999999999999999999999999999999999999998766 4554444 4555 8999
Q ss_pred EeCCceEEEeeeecccCCccccc
Q 029167 147 AWNNLNLNLICFFDLIFDDDFPS 169 (198)
Q Consensus 147 ~~~~~~ig~~IC~d~~~pe~~r~ 169 (198)
+++-++||.+||+|.+.|-+-..
T Consensus 168 dT~iGKIG~AICWEN~MPl~R~a 190 (337)
T KOG0805|consen 168 DTPIGKIGAAICWENRMPLYRTA 190 (337)
T ss_pred ecccchhceeeecccccHHHHHH
Confidence 99999999999999999975433
No 46
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.89 E-value=2.3e-22 Score=169.06 Aligned_cols=152 Identities=13% Similarity=-0.011 Sum_probs=116.3
Q ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167 9 VVVSALQFACTDD-----VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (198)
Q Consensus 9 ~~ia~~Q~~~~~~-----~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a 83 (198)
-++..+++++.++ .-++..++.+.+++|.++|+|+|||||+++++|.... . +.+++.+
T Consensus 186 ~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~--------------~---~~~~~~l 248 (388)
T PRK13825 186 AGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT--------------E---RLWRESL 248 (388)
T ss_pred CCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc--------------c---HHHHHHH
Confidence 4667777777311 1244556677788888889999999999998874211 1 1245556
Q ss_pred HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCC-------ccccccCCCCCeeeEEeCCceEEEe
Q 029167 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-------EKFYFNPGDTGFKVGAWNNLNLNLI 156 (198)
Q Consensus 84 ~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~-------e~~~~~~G~~~~~~~~~~~~~ig~~ 156 (198)
+++++.+++|..+++++++||++++++++|. ...|+|+||+|++++. |..++.+|....++|++++.|+|++
T Consensus 249 ~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~-~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~l 327 (388)
T PRK13825 249 RGSDVTVIAGAAVVDPGGYDNVLVAISAGGG-RILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPL 327 (388)
T ss_pred HhCCCeEEEEeeecCCCCceEEEEEEeCCCC-eeeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEE
Confidence 8899999999988888889999999998886 4599999999877642 5566777743246899999999999
Q ss_pred eeecccC--CccccccCCCCcccc
Q 029167 157 CFFDLIF--DDDFPSRLDFPLPFL 178 (198)
Q Consensus 157 IC~d~~~--pe~~r~~~~~~~~~~ 178 (198)
||||.+| |++.+.++|+|++++
T Consensus 328 ICYE~~F~~pel~~~~~GadlLv~ 351 (388)
T PRK13825 328 ICYEQLLVWPVLQSMLHSPDVIVA 351 (388)
T ss_pred EeeeecCcHHHHHhhccCCCEEEE
Confidence 9999988 776555689999874
No 47
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=1.7e-21 Score=168.87 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=119.5
Q ss_pred CccEEEEEeCCCCC----CHHHHHHHHHHHHHH---HH--hCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHH
Q 029167 7 REVVVSALQFACTD----DVSTNLATAERLVRA---AH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (198)
Q Consensus 7 ~~~~ia~~Q~~~~~----~~~~n~~~i~~~i~~---A~--~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~ 77 (198)
++++|+++|+++.+ +.++....+...+.. +. .+++|+|||||.+++-.... ......
T Consensus 226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~~~--------------~~~~~~ 291 (518)
T COG0815 226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDLTR--------------HPDALA 291 (518)
T ss_pred CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccchhh--------------cchHHH
Confidence 45999999999943 333333333333322 22 37899999999999732211 123367
Q ss_pred HHHHHHHHhCCEEEEeeeec--cCC--eeEEEEEEEcCCCCeeeeeeeccCCCCCCCCc---------------cccccC
Q 029167 78 KMQELAKELGVVMPVSFFEE--ANN--AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNP 138 (198)
Q Consensus 78 ~l~~~a~~~~i~iv~g~~~~--~~~--~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e---------------~~~~~~ 138 (198)
++.+.+++.+..+++|+... .++ .+|||+++++++|++..+|+|+||+|++||-. ...|.+
T Consensus 292 ~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~ 371 (518)
T COG0815 292 RLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSR 371 (518)
T ss_pred HHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccC
Confidence 78888999999999994432 234 48999999999989999999999999998742 235677
Q ss_pred CCCCeeeEEeCC-ceEEEeeeecccCCcccccc--CCCCccc---cccccc
Q 029167 139 GDTGFKVGAWNN-LNLNLICFFDLIFDDDFPSR--LDFPLPF---LNRFSK 183 (198)
Q Consensus 139 G~~~~~~~~~~~-~~ig~~IC~d~~~pe~~r~~--~~~~~~~---~~~~~~ 183 (198)
|+. ..++.+++ .|+++.||||+.||+..|.. +|+++++ ++.|-.
T Consensus 372 G~~-~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf~ 421 (518)
T COG0815 372 GPG-PQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFG 421 (518)
T ss_pred CCC-CcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEcccccccC
Confidence 888 66666664 67999999999999999995 7999986 466653
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.65 E-value=9.2e-17 Score=134.56 Aligned_cols=178 Identities=17% Similarity=0.116 Sum_probs=136.1
Q ss_pred CCCccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167 5 KRREVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (198)
Q Consensus 5 ~~~~~~ia~~Q~~~~-~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a 83 (198)
|+..++||.++.|-| .|.+.|..+|.+-+++|++.||.+-+=||+-++||.|.+ .+.+....+ ...+.+.++.
T Consensus 1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~D---Hf~E~Dt~~---HswE~l~~l~ 74 (706)
T KOG2303|consen 1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCED---HFLESDTLL---HSWEMLAELV 74 (706)
T ss_pred CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHH---hhccchHHH---HHHHHHHHHH
Confidence 567899999999995 799999999999999999999999999999999999986 243332222 3334444444
Q ss_pred ---HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCe-----------------
Q 029167 84 ---KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF----------------- 143 (198)
Q Consensus 84 ---~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~----------------- 143 (198)
...++.+.+|+|....+..||+.+++ -+|+|+.+..|..|.+.+.|.|.+||++.+...
T Consensus 75 ~~~~~~~il~diGmPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q 153 (706)
T KOG2303|consen 75 ESPVTQDILCDIGMPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQ 153 (706)
T ss_pred cCCCCCCeeEecCCchhhhhhhhccceee-cCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCC
Confidence 33478888999999999999999999 689999999999999999999999999988630
Q ss_pred -------eeEEeCCceEEEeeeecccCCccccc---cCCCCcccccccccccccce
Q 029167 144 -------KVGAWNNLNLNLICFFDLIFDDDFPS---RLDFPLPFLNRFSKLNLQKL 189 (198)
Q Consensus 144 -------~~~~~~~~~ig~~IC~d~~~pe~~r~---~~~~~~~~~~~~~~~~~~~~ 189 (198)
.++++...-+|.-||.|+|-|.--.- +.|.+++.+.+.+.--|.++
T Consensus 154 ~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~ 209 (706)
T KOG2303|consen 154 ETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKL 209 (706)
T ss_pred eeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhh
Confidence 23334445689999999998762221 25555555555554444333
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=90.29 E-value=3.4 Score=33.71 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=44.1
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cC-CeeEEEEEEE
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAII 109 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~-~~~yNs~~~i 109 (198)
..+....+|+|+|+.|-.+..... ......++..|.+++++++.....- ++ ..++=.+.++
T Consensus 161 ~~r~la~~GAdill~ps~~~~~~~-----------------~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~iv 223 (291)
T cd07565 161 IARECAYKGAELIIRIQGYMYPAK-----------------DQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIV 223 (291)
T ss_pred HHHHHHHCCCeEEEECCcCCCCcc-----------------hHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEE
Confidence 344445679999999975432110 1222346778899999998532221 22 3455678888
Q ss_pred cCCCCeeee
Q 029167 110 DADGSDLGL 118 (198)
Q Consensus 110 ~~~G~il~~ 118 (198)
+|+|+++..
T Consensus 224 dP~G~ila~ 232 (291)
T cd07565 224 NFDGRTLGE 232 (291)
T ss_pred CCCCCEEEe
Confidence 999998754
No 50
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=88.68 E-value=4.9 Score=31.62 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=42.0
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cCC-eeEEEEEEEc
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIID 110 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~~-~~yNs~~~i~ 110 (198)
.+....+|+|+|+.|-.+...+. ......++..|.+++++++.....- .++ .++=.+.+++
T Consensus 151 ~~~~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~ 213 (254)
T cd07576 151 VRALALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAG 213 (254)
T ss_pred HHHHHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEEC
Confidence 34445679999999864432221 1122345677889999988643321 222 3445578888
Q ss_pred CCCCeeee
Q 029167 111 ADGSDLGL 118 (198)
Q Consensus 111 ~~G~il~~ 118 (198)
|+|+++..
T Consensus 214 p~G~il~~ 221 (254)
T cd07576 214 PDGTVLAR 221 (254)
T ss_pred CCCCEeEe
Confidence 99997643
No 51
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=86.41 E-value=7.3 Score=30.79 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe-eeeccCCeeE-EEEEEE
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEANNAHY-NSIAII 109 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g-~~~~~~~~~y-Ns~~~i 109 (198)
..+.+..+|+|+++.|=.+... . . .......+..|.+++++++.. ..-..++..| =...++
T Consensus 154 ~~r~~~~~gadll~~ps~~~~~----~-~------------~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii 216 (258)
T cd07584 154 VARILTLKGAEVIFCPSAWREQ----D-A------------DIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKIL 216 (258)
T ss_pred HHHHHHHCCCcEEEECCccCCC----C-c------------hHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEE
Confidence 3455566899999999533211 0 0 111123456688999999852 2212223333 367788
Q ss_pred cCCCCeeee
Q 029167 110 DADGSDLGL 118 (198)
Q Consensus 110 ~~~G~il~~ 118 (198)
+|+|+++..
T Consensus 217 ~p~G~il~~ 225 (258)
T cd07584 217 NPRGQVLAE 225 (258)
T ss_pred CCCCceeee
Confidence 999997643
No 52
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=85.56 E-value=7.6 Score=30.74 Aligned_cols=73 Identities=19% Similarity=0.092 Sum_probs=42.2
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCC-eeEEEEEEEc
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIID 110 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~-~~yNs~~~i~ 110 (198)
.+....+|+|+|+.|=.+........ . ......++..|.+++++++..... ..++ .+.=...+++
T Consensus 149 ~r~l~~~gadlil~p~~~~~~~~~~~--~-----------~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~~ 215 (261)
T cd07585 149 VRATALLGAEILFAPHATPGTTSPKG--R-----------EWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMILD 215 (261)
T ss_pred HHHHHHCCCCEEEECCccCCCCCcch--H-----------HHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEEC
Confidence 45556789999999964432111000 0 111234567788899999864222 1222 2334568888
Q ss_pred CCCCeeee
Q 029167 111 ADGSDLGL 118 (198)
Q Consensus 111 ~~G~il~~ 118 (198)
|+|+++..
T Consensus 216 p~G~v~~~ 223 (261)
T cd07585 216 PYGRVLAE 223 (261)
T ss_pred CCCCEEec
Confidence 99997654
No 53
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=85.27 E-value=9.6 Score=32.05 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=44.5
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccC-CeeEEEEEEE
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-NAHYNSIAII 109 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~-~~~yNs~~~i 109 (198)
..+.++.+|+++|+-|-.+..+. . ......++..|.+++++++..... .++ -.++=.+.++
T Consensus 174 ~~R~la~~GAelii~psa~~~~~--~---------------~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv 236 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQGYMYPA--K---------------EQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII 236 (345)
T ss_pred HHHHHHHcCCeEEEEccccCCCc--h---------------HHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence 44455678999999885432210 0 122345677788999999874332 222 2445668899
Q ss_pred cCCCCeeee
Q 029167 110 DADGSDLGL 118 (198)
Q Consensus 110 ~~~G~il~~ 118 (198)
+|+|+++..
T Consensus 237 dp~G~vla~ 245 (345)
T PRK13286 237 GFDGRTLGE 245 (345)
T ss_pred CCCCcEEEe
Confidence 999998765
No 54
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=84.14 E-value=5 Score=32.00 Aligned_cols=58 Identities=14% Similarity=-0.004 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.+.....+.+.+.++...++|..+++|||..-+.... . .+.-.-.-.+|.+.+++|+-
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g~---------l------~~Fk~Ga~~lA~~~~~PIvP 176 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRG---------L------LPFKTGAFHAAIAAGVPIIP 176 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCC---------C------CCccHHHHHHHHHcCCCEEE
Confidence 3455666677777777777789999999987653210 0 13334566778888888864
No 55
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=82.67 E-value=8.1 Score=30.42 Aligned_cols=71 Identities=17% Similarity=0.049 Sum_probs=41.8
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-cc-CCeeEEEEEEE
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-NNAHYNSIAII 109 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~-~~~~yNs~~~i 109 (198)
..+....+|+|+|+.|=.+... . . .......+..|.+++++++..... .. +..++=.+.++
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~~~-~-~---------------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii 213 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWPAA-R-I---------------EHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI 213 (253)
T ss_pred HHHHHHHcCCcEEEECCCCCCC-c-h---------------HHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence 4455567899999999543211 0 0 011123466788999998753221 12 23344556778
Q ss_pred cCCCCeeeee
Q 029167 110 DADGSDLGLY 119 (198)
Q Consensus 110 ~~~G~il~~y 119 (198)
+|+|+++...
T Consensus 214 ~p~G~il~~~ 223 (253)
T cd07583 214 DPWGEVLAEA 223 (253)
T ss_pred CCCchhheec
Confidence 8999976543
No 56
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=82.33 E-value=10 Score=29.58 Aligned_cols=69 Identities=26% Similarity=0.213 Sum_probs=45.2
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-c-cCCeeEEEEEEEc
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-ANNAHYNSIAIID 110 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~-~~~~~yNs~~~i~ 110 (198)
.+.+..+|+|+|+.|-...... ........+..|.+++++++..... . .+...+-...+++
T Consensus 152 ~~~~~~~g~dli~~ps~~~~~~-----------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~ 214 (253)
T cd07197 152 ARELALKGADIILVPAAWPTAR-----------------REHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVD 214 (253)
T ss_pred HHHHHHCCCcEEEECCcCCCcc-----------------hHHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEEC
Confidence 3445577999999998754321 0234456777899999999874332 1 2234556678888
Q ss_pred CCCCeeee
Q 029167 111 ADGSDLGL 118 (198)
Q Consensus 111 ~~G~il~~ 118 (198)
|+|+++..
T Consensus 215 p~G~~~~~ 222 (253)
T cd07197 215 PDGEVLAE 222 (253)
T ss_pred CCCceeee
Confidence 99987643
No 57
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=82.16 E-value=15 Score=28.95 Aligned_cols=70 Identities=14% Similarity=-0.028 Sum_probs=42.1
Q ss_pred HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cCC-eeEEEEEEEcC
Q 029167 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIIDA 111 (198)
Q Consensus 34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~~-~~yNs~~~i~~ 111 (198)
+.....|+|+++.|=.+.. .... . ......++..|.+++++++.....- .++ .+.=.+.+++|
T Consensus 156 r~~~~~ga~ll~~ps~~~~--~~~~----~---------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p 220 (261)
T cd07570 156 AELALAGADLILNLSASPF--HLGK----Q---------DYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADN 220 (261)
T ss_pred HHHHHcCCcEEEEeCCCcc--ccCc----H---------HHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcC
Confidence 3345679999999965421 1110 0 1122457788999999998743322 222 23344788889
Q ss_pred CCCeeee
Q 029167 112 DGSDLGL 118 (198)
Q Consensus 112 ~G~il~~ 118 (198)
+|+++..
T Consensus 221 ~G~vl~~ 227 (261)
T cd07570 221 DGELLAE 227 (261)
T ss_pred CCCEEEe
Confidence 9998754
No 58
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=81.95 E-value=9.4 Score=31.41 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=43.6
Q ss_pred HHHHHhC-CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcC
Q 029167 33 VRAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (198)
Q Consensus 33 i~~A~~~-g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~ 111 (198)
.+....+ |+|+++.|=.+...... ......++..|.+++++++.-..... ...+-.+.+++|
T Consensus 189 ~r~la~~~GAdlil~paaw~~~~~~----------------~~w~~l~~arA~eN~~~vi~~N~~g~-~~~~G~S~iv~P 251 (299)
T cd07567 189 ALELVKKLGVDDIVFPTAWFSELPF----------------LTAVQIQQAWAYANGVNLLAANYNNP-SAGMTGSGIYAG 251 (299)
T ss_pred HHHHHHhCCCCEEEECCccCCCCCc----------------hhHHHHHHHHHHHcCceEEEecCCCC-cCccccceEEcC
Confidence 3444456 99999999554321110 01124467789999999987433221 223456788889
Q ss_pred C-CCeeeee
Q 029167 112 D-GSDLGLY 119 (198)
Q Consensus 112 ~-G~il~~y 119 (198)
+ |+++...
T Consensus 252 ~~G~v~a~~ 260 (299)
T cd07567 252 RSGALVYHY 260 (299)
T ss_pred CCCcEEEEe
Confidence 9 9988765
No 59
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=80.94 E-value=14 Score=29.07 Aligned_cols=71 Identities=17% Similarity=0.050 Sum_probs=41.8
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcC
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~ 111 (198)
..+..+.+|+++|+.|=.+...... ........+..|.+++++++..... +....=.+.+++|
T Consensus 155 ~~~~~~~~ga~lil~ps~~~~~~~~---------------~~~~~~~~~~rA~en~~~vv~~n~~--g~~~~G~S~i~~p 217 (255)
T cd07581 155 LARALALAGADVIVVPAAWVAGPGK---------------EEHWETLLRARALENTVYVAAAGQA--GPRGIGRSMVVDP 217 (255)
T ss_pred HHHHHHHCCCcEEEECCcccCCCCc---------------hHHHHHHHHHHHHHhCCEEEEEcCc--CCCcccceEEECC
Confidence 3455566799999999643221100 0122345667788999998864322 1123334678889
Q ss_pred CCCeeeee
Q 029167 112 DGSDLGLY 119 (198)
Q Consensus 112 ~G~il~~y 119 (198)
+|+++...
T Consensus 218 ~G~i~~~~ 225 (255)
T cd07581 218 LGVVLADL 225 (255)
T ss_pred Ccceeeec
Confidence 99876543
No 60
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=80.36 E-value=24 Score=27.99 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=42.0
Q ss_pred HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE-eeeeccCC-eeEEEEEEEcC
Q 029167 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANN-AHYNSIAIIDA 111 (198)
Q Consensus 34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~-g~~~~~~~-~~yNs~~~i~~ 111 (198)
+....+|+|+|+.|=.+........ ... .......+..|.+++++++. +..-.+++ .++=...+++|
T Consensus 154 r~~~~~ga~li~~ps~~~~~~~~~~-------~~~----~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p 222 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPMPRPPE-------GGP----PMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP 222 (268)
T ss_pred HHHHHcCCCEEEEcCcccccCCccc-------ccC----cHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence 4445679999999976543221000 000 01112345567889999976 33322233 34456789999
Q ss_pred CCCeeee
Q 029167 112 DGSDLGL 118 (198)
Q Consensus 112 ~G~il~~ 118 (198)
+|+++..
T Consensus 223 ~G~~~~~ 229 (268)
T cd07580 223 DGWPLAG 229 (268)
T ss_pred CCCeeee
Confidence 9997543
No 61
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=80.31 E-value=8.3 Score=30.51 Aligned_cols=70 Identities=21% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-c-CCe-eEEEEEE
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-NNA-HYNSIAI 108 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~-~~~-~yNs~~~ 108 (198)
..+.+..+|+|+|+.|-.+.... .. .......+..|.+++++++.....- . ++. .+=.+.+
T Consensus 161 ~~r~~~~~gadli~~p~~~~~~~--~~--------------~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i 224 (265)
T cd07572 161 LARALARQGADILTVPAAFTMTT--GP--------------AHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI 224 (265)
T ss_pred HHHHHHHCCCCEEEECCCCCCCc--ch--------------HHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence 44556678999999995332111 00 1112334666888999998753321 1 122 2335777
Q ss_pred EcCCCCeee
Q 029167 109 IDADGSDLG 117 (198)
Q Consensus 109 i~~~G~il~ 117 (198)
++|+|+++.
T Consensus 225 ~~p~G~il~ 233 (265)
T cd07572 225 VDPWGEVLA 233 (265)
T ss_pred ECCCcHHHh
Confidence 889998653
No 62
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=79.65 E-value=11 Score=31.79 Aligned_cols=65 Identities=15% Similarity=-0.002 Sum_probs=39.2
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-c----------------
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A---------------- 98 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~---------------- 98 (198)
...+|+|+|+.|=.+..... . ......++..|.+++++++...-.- +
T Consensus 237 la~~GAdiil~Psa~~~~~~-~---------------~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~ 300 (363)
T cd07587 237 YGLNGAEIVFNPSATVGALS-E---------------PMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHK 300 (363)
T ss_pred HHHcCCcEEEECCCcCCCCc-h---------------HHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccc
Confidence 34679999999965431110 0 0111345667889999998532111 1
Q ss_pred -CCeeEEEEEEEcCCCCee
Q 029167 99 -NNAHYNSIAIIDADGSDL 116 (198)
Q Consensus 99 -~~~~yNs~~~i~~~G~il 116 (198)
...++-.+++++|+|+++
T Consensus 301 ~~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 301 DFGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred ccccccceeEEECCCCCCc
Confidence 023566788999999864
No 63
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=78.46 E-value=21 Score=28.72 Aligned_cols=70 Identities=17% Similarity=0.008 Sum_probs=40.7
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-cc----CCeeEEEEE
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA----NNAHYNSIA 107 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~----~~~~yNs~~ 107 (198)
.+....+|+|+|+.|=.+..++.. .......+..|.+++++++..... .. ...++-...
T Consensus 171 ~r~la~~Ga~li~~ps~~~~~~~~----------------~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ 234 (287)
T cd07568 171 WRALGLNGAEIVFNPSATVAGLSE----------------YLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSY 234 (287)
T ss_pred HHHHHHCCCeEEEECCcCCCCCch----------------hhhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeE
Confidence 444556799999999654322110 001113455677889988742211 11 124556678
Q ss_pred EEcCCCCeeee
Q 029167 108 IIDADGSDLGL 118 (198)
Q Consensus 108 ~i~~~G~il~~ 118 (198)
+++|+|+++..
T Consensus 235 ii~p~G~il~~ 245 (287)
T cd07568 235 FVDPRGQFVAS 245 (287)
T ss_pred EECCCceEEEe
Confidence 89999998754
No 64
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=78.35 E-value=10 Score=26.16 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.....+.+.++..+|..+++|||...... .. + .+...-...+|++.++.|+.
T Consensus 75 ~~~~~~~~~~~l~~g~~v~ifPeG~~~~~--~~----~---------~~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 75 IATALKAAIEVLKQGRSIGVFPEGTRSRG--RD----I---------LPFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCC--CC----C---------CCcchhHHHHHHHcCCCEEe
Confidence 33445555666777889999999875421 10 0 12235567788888888864
No 65
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=78.17 E-value=26 Score=26.21 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=52.6
Q ss_pred EEEEeCCC---CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCC-----ChHHHHHHHH
Q 029167 11 VSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKD-----HPTILKMQEL 82 (198)
Q Consensus 11 ia~~Q~~~---~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~-----~~~~~~l~~~ 82 (198)
+.++-+-. +.-+-.....+.++.++..+++.++-++- ++--+-.+.++.+.+.+...+. .-..+.+.++
T Consensus 54 ~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~---ISvDP~~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l 130 (174)
T PF02630_consen 54 WVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVF---ISVDPERDTPEVLKKYAKKFGPDFIGLTGSREEIEEL 130 (174)
T ss_dssp EEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEE---EESSTTTC-HHHHHHHHHCHTTTCEEEEEEHHHHHHH
T ss_pred eEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEE---EEeCCCCCCHHHHHHHHHhcCCCcceeEeCHHHHHHH
Confidence 44444444 22234455666666666655443432221 2212222333333333322211 1234678888
Q ss_pred HHHhCCEEEEeeeeccC-C-e--eEEEEEEEcCCCCeeeeee
Q 029167 83 AKELGVVMPVSFFEEAN-N-A--HYNSIAIIDADGSDLGLYR 120 (198)
Q Consensus 83 a~~~~i~iv~g~~~~~~-~-~--~yNs~~~i~~~G~il~~y~ 120 (198)
++.+++...-....+.+ + . .-+..++++|+|++...|+
T Consensus 131 ~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 131 AKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 88888776543322222 2 1 2256899999999988875
No 66
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=76.69 E-value=24 Score=27.99 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=42.8
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cC-CeeEEEEEEEcCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAIIDADG 113 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~-~~~yNs~~~i~~~G 113 (198)
...+|+|+|+.|=.+........ . . ........++..|.+++++++.....- .+ ..++-.+.+++|+|
T Consensus 155 ~~~~ga~lil~ps~~~~~~~~~~----~---~---~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G 224 (269)
T cd07586 155 LALDGADVIFIPANSPARGVGGD----F---D---NEENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHCCCCEEEEeCCCccccCccc----c---c---hhHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCCC
Confidence 45679999999976432110000 0 0 001223456777899999998744332 22 34445578889999
Q ss_pred Ceeee
Q 029167 114 SDLGL 118 (198)
Q Consensus 114 ~il~~ 118 (198)
+++..
T Consensus 225 ~il~~ 229 (269)
T cd07586 225 EVVAE 229 (269)
T ss_pred CEEEe
Confidence 98754
No 67
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=76.49 E-value=31 Score=27.44 Aligned_cols=76 Identities=17% Similarity=0.029 Sum_probs=43.2
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-c-----cCCeeEEEE
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-----ANNAHYNSI 106 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~-----~~~~~yNs~ 106 (198)
.+....+|+|+|+.|=.+.... ... ...........++..|.+++++++..... . .+..++=.+
T Consensus 159 ~r~~a~~ga~lil~ps~~~~~~-~~~---------~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S 228 (279)
T TIGR03381 159 ARAMALMGAEVLFYPTAIGSEP-HDP---------DLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSS 228 (279)
T ss_pred HHHHHHcCCCEEEecCccCCCC-ccc---------ccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeE
Confidence 3445567999999996543211 000 00000112234555688899999864332 1 123455678
Q ss_pred EEEcCCCCeeee
Q 029167 107 AIIDADGSDLGL 118 (198)
Q Consensus 107 ~~i~~~G~il~~ 118 (198)
.+++|+|+++..
T Consensus 229 ~i~~p~G~il~~ 240 (279)
T TIGR03381 229 FIADHTGELVAE 240 (279)
T ss_pred EEECCCCcEeec
Confidence 899999998754
No 68
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=76.36 E-value=28 Score=28.25 Aligned_cols=70 Identities=16% Similarity=0.032 Sum_probs=41.8
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCC-----eeE-EEE
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANN-----AHY-NSI 106 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~-----~~y-Ns~ 106 (198)
.+..+.+|+|+|+.|=.+...... ......++..|.+++++++.....-.++ ..| -.+
T Consensus 182 ~r~la~~Gadlil~psa~~~~~~~----------------~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S 245 (294)
T cd07582 182 ARGLAMNGAEVLLRSSSEVPSVEL----------------DPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGS 245 (294)
T ss_pred HHHHHHCCCcEEEEcCCCCCCcch----------------hhHHHHHHHHHHhcCCEEEEecccccCcccccCceeccee
Confidence 444556799999999766432210 0111345677889999998533221111 223 456
Q ss_pred EEEcCCCCeeee
Q 029167 107 AIIDADGSDLGL 118 (198)
Q Consensus 107 ~~i~~~G~il~~ 118 (198)
.+++|+|+++..
T Consensus 246 ~ivdp~G~vla~ 257 (294)
T cd07582 246 MIVDYKGRVLAE 257 (294)
T ss_pred EEECCCCCEEEe
Confidence 777899998754
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.80 E-value=21 Score=28.48 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+...+.+.+.++.|..-|++.|++|-... .+.... ...+.+. -+.++.+.++|+++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~~-~~~~~~~------~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGYDV-YYEEKS-EETRQRF------IEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCccc-cccccc-HHHHHHH------HHHHHHHHHHHHHhCCEEEE
Confidence 45677888999999999999999862211 111110 1112111 25667888899999999987
No 70
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=75.45 E-value=17 Score=29.02 Aligned_cols=66 Identities=20% Similarity=0.095 Sum_probs=44.7
Q ss_pred HhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cC--CeeEEEEEEEcCCC
Q 029167 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN--NAHYNSIAIIDADG 113 (198)
Q Consensus 37 ~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~--~~~yNs~~~i~~~G 113 (198)
...|+++|+.|-.+...... ..-...++.-|.+++++++.....- .+ ...+-.+++++|+|
T Consensus 163 a~~Gaeii~~p~a~~~~~~~----------------~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G 226 (274)
T COG0388 163 ALGGAELLLVPAAWPAERGL----------------DHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDG 226 (274)
T ss_pred HhcCCeEEEEcCCCCCcccH----------------HHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCc
Confidence 34589999999987754320 0111236777889999998754432 22 46778899999999
Q ss_pred Ceeee
Q 029167 114 SDLGL 118 (198)
Q Consensus 114 ~il~~ 118 (198)
+++..
T Consensus 227 ~v~~~ 231 (274)
T COG0388 227 EVLAE 231 (274)
T ss_pred cEEee
Confidence 86554
No 71
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=74.66 E-value=24 Score=28.30 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+..++.+.+.++.|..-|++.|+++..... +. ....+.+... -+.++.+.+.|+++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~-~~~~~~~~~~------~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYDVY-YE-EHDEETRRRF------REGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcccc-cC-cCCHHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 356677888999999999999998753211 11 1111222222 25678889999999999987
No 72
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=74.64 E-value=31 Score=27.27 Aligned_cols=66 Identities=23% Similarity=0.101 Sum_probs=39.8
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-c----CC-eeEEEE
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A----NN-AHYNSI 106 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~----~~-~~yNs~ 106 (198)
.+....+|+|+|+.|-.+...+ + . ..++..|.+++++++.....- . ++ ...-.+
T Consensus 150 ~r~~~~~Gadli~~ps~~~~~~--------~----------~--~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S 209 (259)
T cd07577 150 ARTLALKGADIIAHPANLVLPY--------C----------P--KAMPIRALENRVFTITANRIGTEERGGETLRFIGKS 209 (259)
T ss_pred HHHHHHcCCCEEEECCccCCch--------h----------h--hhhhHhhhhcCceEEEEecCcccCCCCCCceEeeee
Confidence 3444567999999996432110 0 0 234666788999988632211 1 12 234567
Q ss_pred EEEcCCCCeeee
Q 029167 107 AIIDADGSDLGL 118 (198)
Q Consensus 107 ~~i~~~G~il~~ 118 (198)
.+++|+|+++..
T Consensus 210 ~i~~p~G~i~~~ 221 (259)
T cd07577 210 QITSPKGEVLAR 221 (259)
T ss_pred EEECCCCCEEee
Confidence 889999997644
No 73
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=73.85 E-value=35 Score=27.26 Aligned_cols=79 Identities=18% Similarity=0.029 Sum_probs=42.7
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-c-----CCeeEEE
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-----NNAHYNS 105 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~-----~~~~yNs 105 (198)
..+....+|+|+++.|=.+. +..... ..-.. ........++..|.+++++++.....- . +-.++=.
T Consensus 159 ~~r~~~~~gadlil~ps~~~--~~~~~~----~~~~~--~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~ 230 (284)
T cd07573 159 AARLMALQGAEILFYPTAIG--SEPQEP----PEGLD--QRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGS 230 (284)
T ss_pred HHHHHHHCCCCEEEecCccc--CCCCCc----cccCC--chHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeece
Confidence 34555677999999995532 111100 00000 001122344566889999998632221 1 2234456
Q ss_pred EEEEcCCCCeeee
Q 029167 106 IAIIDADGSDLGL 118 (198)
Q Consensus 106 ~~~i~~~G~il~~ 118 (198)
+.+++|+|+++..
T Consensus 231 S~i~~p~G~i~~~ 243 (284)
T cd07573 231 SFIADPFGEILAQ 243 (284)
T ss_pred eEEECCCCCeeec
Confidence 7888899997644
No 74
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=72.40 E-value=30 Score=27.52 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.+..++.+.+.++.|+.-|++.|+++-... ++... ..+.+... .+.++.+.+.|+++|+.+.+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~~-~~~~~~~~------~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAHA-GYLTP-PNVIWGRL------AENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCC-HHHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 346778888999999999999988865422 22211 11122222 26778899999999999876
No 75
>PLN02747 N-carbamolyputrescine amidase
Probab=72.27 E-value=42 Score=27.14 Aligned_cols=76 Identities=17% Similarity=-0.018 Sum_probs=43.5
Q ss_pred HHHHHhCCCcEEEeCCCCCCc-cCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-c------cC---Ce
Q 029167 33 VRAAHGKGANIILIQELFEGY-YFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E------AN---NA 101 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g-~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~------~~---~~ 101 (198)
.+....+|+++|+.|=.+.+. +.... . ........++..|.+++++++...-. . .+ ..
T Consensus 165 ~r~~~~~Ga~lil~ps~~~~~~~~~~~---------~--~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~ 233 (296)
T PLN02747 165 ARAMVLQGAEVLLYPTAIGSEPQDPGL---------D--SRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKIT 233 (296)
T ss_pred HHHHHHCCCCEEEEeCccCCCCccccc---------c--hHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCce
Confidence 455566799999999775321 11100 0 00122234567788899988763211 1 11 23
Q ss_pred eEEEEEEEcCCCCeeeee
Q 029167 102 HYNSIAIIDADGSDLGLY 119 (198)
Q Consensus 102 ~yNs~~~i~~~G~il~~y 119 (198)
++=.+.+++|+|+++..-
T Consensus 234 ~~G~S~i~~p~G~vl~~~ 251 (296)
T PLN02747 234 FYGGSFIAGPTGEIVAEA 251 (296)
T ss_pred EeeeeEEECCCCCEeecC
Confidence 445678888999987643
No 76
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=72.16 E-value=21 Score=28.81 Aligned_cols=84 Identities=10% Similarity=0.001 Sum_probs=43.5
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHH-hcCCCCC-ChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEc
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQ-RAKPYKD-HPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIID 110 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~-~a~~~~~-~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~ 110 (198)
.+....+|+|+|+.|-.+...+........... ....... ....+.++.-|.+++++++.....-.....+-.+.+++
T Consensus 145 ~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN~~g~~~~~~G~S~ii~ 224 (279)
T cd07579 145 GRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFANVPDPARGYTGWSGVFG 224 (279)
T ss_pred HHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEeeccCCccccccccEEEC
Confidence 344556799999999876432110000000000 0000000 02334577889999999987543322223344467888
Q ss_pred CCCCee
Q 029167 111 ADGSDL 116 (198)
Q Consensus 111 ~~G~il 116 (198)
|+|+++
T Consensus 225 P~G~v~ 230 (279)
T cd07579 225 PDTFAF 230 (279)
T ss_pred CCeEEc
Confidence 999764
No 77
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=72.14 E-value=11 Score=28.58 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhC--CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 24 TNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~--g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
...+.+.+.+++..+. +..+++|||..-.. .......+++|++.++.++-
T Consensus 86 ~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~-------------------~~~~~~~~~~a~k~~~p~l~ 137 (193)
T cd07990 86 KDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFT-------------------EEKKERSQEFAEKNGLPPLK 137 (193)
T ss_pred HhHHHHHHHHHHHhcCCCCcEEEEeCcccCCC-------------------HHHHHHHHHHHHHcCCCCcc
Confidence 3455666666666554 78899999986531 12234445778888777764
No 78
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.12 E-value=29 Score=25.93 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+...+.+.+.++.|..-|++.++++=..............+... .+.++.+.+.++++|+.+.+
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL------AENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH------HHHHHHHHhhhhhhcceEEE
Confidence 44478888899999888999999984311011111112223332 26678899999999998876
No 79
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=70.83 E-value=25 Score=27.88 Aligned_cols=64 Identities=9% Similarity=-0.064 Sum_probs=39.9
Q ss_pred CCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cC--CeeEEEEEEEcCCCCe
Q 029167 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN--NAHYNSIAIIDADGSD 115 (198)
Q Consensus 39 ~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~--~~~yNs~~~i~~~G~i 115 (198)
+|+|+|+.|=.+.... . ......++..|.+++++++.....- .+ ..++=.+.+++|+|++
T Consensus 154 ~gad~i~~~s~~~~~~--~---------------~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~v 216 (256)
T PRK10438 154 NDYDLALYVANWPAPR--S---------------LHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEI 216 (256)
T ss_pred cCCCEEEEecCCCCCc--h---------------HHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcE
Confidence 5799999987643211 0 0112345677899999998643322 21 2344567889999998
Q ss_pred eeee
Q 029167 116 LGLY 119 (198)
Q Consensus 116 l~~y 119 (198)
+..-
T Consensus 217 l~~~ 220 (256)
T PRK10438 217 IATA 220 (256)
T ss_pred EEEc
Confidence 7653
No 80
>PLN02798 nitrilase
Probab=70.42 E-value=33 Score=27.70 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHHHH-hCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec---cCCeeEEEEEE
Q 029167 33 VRAAH-GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAI 108 (198)
Q Consensus 33 i~~A~-~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~---~~~~~yNs~~~ 108 (198)
.+... .+|+|+|+.|-.+.... .. ......++..|.+++++++...-.- .+...+=...+
T Consensus 172 ~r~~a~~~Gadlil~ps~~~~~~--~~--------------~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~i 235 (286)
T PLN02798 172 YQQLRFEHGAQVLLVPSAFTKPT--GE--------------AHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALI 235 (286)
T ss_pred HHHHHHhCCCcEEEECCcCCCCC--cH--------------HHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEE
Confidence 34444 68999999997543211 00 0111335677888999988632221 12334556788
Q ss_pred EcCCCCeeee
Q 029167 109 IDADGSDLGL 118 (198)
Q Consensus 109 i~~~G~il~~ 118 (198)
++|+|+++..
T Consensus 236 i~p~G~il~~ 245 (286)
T PLN02798 236 IDPWGTVVAR 245 (286)
T ss_pred ECCCccchhh
Confidence 8999998644
No 81
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=70.09 E-value=17 Score=25.07 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 029167 26 LATAERLVRAAHGKGANIILIQELFEG 52 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~~ 52 (198)
.....+.+.+..++|-.+++|||...+
T Consensus 77 ~~~~~~~~~~~l~~~~~i~ifPEG~~~ 103 (132)
T PF01553_consen 77 NRKALKDIKEILRKGGSIVIFPEGTRS 103 (132)
T ss_dssp HHHHHHHHHHHHHC---EEE-TT-S--
T ss_pred cchhHHHHHHHhhhcceeeecCCccCc
Confidence 344444444455665559999998654
No 82
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=69.84 E-value=37 Score=27.13 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.+...+.+++.++.|.+-|++.|+++-... ++.. .....+... -+.++.+.+.|+++|+.+.+
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~-~~~~-~~~~~~~~~------~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGYDV-YYEQ-ANNETRRRF------IDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCccc-cccc-cHHHHHHHH------HHHHHHHHHHHHHhCCEEEE
Confidence 345677888999999999999999862110 1110 001111111 24668888999999998877
No 83
>PLN02504 nitrilase
Probab=69.54 E-value=29 Score=29.10 Aligned_cols=65 Identities=18% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee----------------
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---------------- 96 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~---------------- 96 (198)
.+....+|+++++.|-.+. . ......++..|.+++++++...-.
T Consensus 195 ~r~la~~Gadii~~p~~~~-----~---------------~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G 254 (346)
T PLN02504 195 RTAMYAKGIEIYCAPTADS-----R---------------ETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSG 254 (346)
T ss_pred HHHHHHCCCeEEEECCCCC-----c---------------hhHHHHHHHHHHccCcEEEEecccccccccCccccccccc
Confidence 3344567999999984321 0 111234566789999999853221
Q ss_pred cc-----C-CeeEEEEEEEcCCCCeee
Q 029167 97 EA-----N-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 97 ~~-----~-~~~yNs~~~i~~~G~il~ 117 (198)
.. + ..++=.+++++|+|+++.
T Consensus 255 ~~~~~~~~~~~~~G~S~IvdP~G~vla 281 (346)
T PLN02504 255 TEEDLTPDSIVCAGGSVIISPSGTVLA 281 (346)
T ss_pred ccccccccccccCcceEEECCCCCEec
Confidence 00 1 123456889999999763
No 84
>PLN00202 beta-ureidopropionase
Probab=69.46 E-value=32 Score=29.62 Aligned_cols=65 Identities=14% Similarity=-0.009 Sum_probs=39.7
Q ss_pred HhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeecc-----------C------
Q 029167 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-----------N------ 99 (198)
Q Consensus 37 ~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~-----------~------ 99 (198)
+.+|+|+|+.|=.+..... . . .....++..|.+++++++...-.-. +
T Consensus 259 a~~GAdiIl~Psa~~~~~~-~---~------------~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~ 322 (405)
T PLN00202 259 GLNGAEIVFNPSATVGDLS-E---P------------MWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKD 322 (405)
T ss_pred HHCCCcEEEECCCCCCccC-H---H------------HHHHHHHHHHHhcCCEEEEeccccccccccccccccccccccc
Confidence 4679999999965432110 0 0 1113456778899999976322111 0
Q ss_pred -CeeEEEEEEEcCCCCeee
Q 029167 100 -NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 100 -~~~yNs~~~i~~~G~il~ 117 (198)
..++=.+++++|+|+++.
T Consensus 323 ~~~f~G~S~Iv~P~G~vla 341 (405)
T PLN00202 323 FGHFYGSSHFSAPDASCTP 341 (405)
T ss_pred cccccceeEEEcCCCCEec
Confidence 235677888999999754
No 85
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=68.90 E-value=17 Score=24.35 Aligned_cols=52 Identities=21% Similarity=0.099 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEE
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv 91 (198)
.+.+.+.+.++ +.+.|..+++|||....... . . .+...-...+|++.+..|+
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~~~~-~--------~------~~~~~g~~~la~~~~~~v~ 111 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRSRPG-K--------L------LPFKKGAARLALEAGVPIV 111 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccCCCC-C--------c------CCCcccHHHHHHHcCCCEE
Confidence 45555555554 55668999999998764321 0 0 1222346677777776554
No 86
>PRK13981 NAD synthetase; Provisional
Probab=66.89 E-value=47 Score=29.64 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=43.6
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCC-eeEEEEEEE
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAII 109 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~-~~yNs~~~i 109 (198)
..+..+.+|+|+|+.|=.+ ++.... .......++..|.+++++++..... ..++ .+.-.++++
T Consensus 153 ~~r~la~~Gadlil~psa~--~~~~~~-------------~~~~~~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~ 217 (540)
T PRK13981 153 PAETLAEAGAELLLVPNAS--PYHRGK-------------PDLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVL 217 (540)
T ss_pred HHHHHHHCCCcEEEEcCCC--cccCCc-------------HHHHHHHHHHHHHHhCCeEEEEecccCCCceEEeCceEEE
Confidence 3344556799999999433 222110 0112346788899999999864332 2223 333567888
Q ss_pred cCCCCeeee
Q 029167 110 DADGSDLGL 118 (198)
Q Consensus 110 ~~~G~il~~ 118 (198)
+|+|+++..
T Consensus 218 dp~G~il~~ 226 (540)
T PRK13981 218 NADGELAAR 226 (540)
T ss_pred CCCCCEeee
Confidence 899988654
No 87
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=66.37 E-value=36 Score=27.66 Aligned_cols=72 Identities=14% Similarity=-0.008 Sum_probs=40.1
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec--------------
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-------------- 97 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-------------- 97 (198)
..+.++.+||++++-|-. .+++... .........+..|.+++++++...-.-
T Consensus 165 ~~r~~a~~ga~ii~~~~~--~~~~~~~------------~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~ 230 (297)
T cd07564 165 ARYALYAQGEQIHVAPWP--DFSPYYL------------SREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEE 230 (297)
T ss_pred HHHHHHHCCCeEEEECCC--Ccccccc------------cHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccc
Confidence 444556779999887421 1111000 001222446777899999998632111
Q ss_pred ---cCCeeEEEEEEEcCCCCeee
Q 029167 98 ---ANNAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 98 ---~~~~~yNs~~~i~~~G~il~ 117 (198)
.....+=.+.+++|+|+++.
T Consensus 231 ~~~~~~~~~G~S~iv~P~G~il~ 253 (297)
T cd07564 231 ADPLEVLGGGGSAIVGPDGEVLA 253 (297)
T ss_pred cccccccCCCceEEECCCCCeec
Confidence 11224456788999999763
No 88
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=65.28 E-value=57 Score=25.73 Aligned_cols=66 Identities=18% Similarity=-0.017 Sum_probs=39.1
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec--cCCeeEEEEEEEc
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE--ANNAHYNSIAIID 110 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~--~~~~~yNs~~~i~ 110 (198)
.+....+|+++++.|=.+..+... . ......|.+++++++.....- .+...+=...+++
T Consensus 155 ~r~~~~~ga~ll~~ps~~~~~~~~----------------~---~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~ii~ 215 (258)
T cd07578 155 ARLLALGGADVICHISNWLAERTP----------------A---PYWINRAFENGCYLIESNRWGLERGVQFSGGSCIIE 215 (258)
T ss_pred HHHHHHcCCCEEEEcCCCCCCCCc----------------c---hHHHHhhhcCCeEEEEecceeccCCcceeeEEEEEC
Confidence 344456799999998654321100 0 112356788899888643221 1223445678899
Q ss_pred CCCCeee
Q 029167 111 ADGSDLG 117 (198)
Q Consensus 111 ~~G~il~ 117 (198)
|+|+++.
T Consensus 216 p~G~il~ 222 (258)
T cd07578 216 PDGTIQA 222 (258)
T ss_pred CCCcEee
Confidence 9999764
No 89
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=64.83 E-value=52 Score=28.62 Aligned_cols=38 Identities=8% Similarity=0.199 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHhCCEEEE-eeeeccC--------CeeEEEEEEEc
Q 029167 73 HPTILKMQELAKELGVVMPV-SFFEEAN--------NAHYNSIAIID 110 (198)
Q Consensus 73 ~~~~~~l~~~a~~~~i~iv~-g~~~~~~--------~~~yNs~~~i~ 110 (198)
++....|.++||.+++++++ |-..|++ .+.-.+++.|.
T Consensus 196 Re~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtVlyFE 242 (456)
T COG1066 196 REVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTVLYFE 242 (456)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEEcccccccCchheeeeeeEEEEEe
Confidence 35567899999999999976 8887775 36788999995
No 90
>PRK13287 amiF formamidase; Provisional
Probab=64.82 E-value=74 Score=26.53 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=40.2
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHH-HHHHHHHHHhCCEEEEeeeeccCC--eeEEEEEE
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTI-LKMQELAKELGVVMPVSFFEEANN--AHYNSIAI 108 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~-~~l~~~a~~~~i~iv~g~~~~~~~--~~yNs~~~ 108 (198)
..+..+.+|+++++-|=.+.. ... +.. -..+..|.+++++++.....-.++ .++=.+.+
T Consensus 173 ~~R~~a~~GAeill~~s~~~~--~~~----------------~~w~~~~~arA~en~~~vv~an~~G~~~~~~~~G~S~I 234 (333)
T PRK13287 173 MAREAAYKGANVMIRISGYST--QVR----------------EQWILTNRSNAWQNLMYTASVNLAGYDGVFYYFGEGQV 234 (333)
T ss_pred HHHHHHHCCCeEEEECCccCC--cch----------------hHHHHHHHHHHHhCCcEEEEEeccccCCCeeeeeeeEE
Confidence 344455679999998843321 110 111 123445778888887633222222 23456788
Q ss_pred EcCCCCeeeee
Q 029167 109 IDADGSDLGLY 119 (198)
Q Consensus 109 i~~~G~il~~y 119 (198)
++|+|+++..-
T Consensus 235 idp~G~vl~~~ 245 (333)
T PRK13287 235 CNFDGTTLVQG 245 (333)
T ss_pred ECCCCcEEEeC
Confidence 99999987653
No 91
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=62.64 E-value=38 Score=25.88 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCc
Q 029167 27 ATAERLVRAAHGKGANIILIQELFEGY 53 (198)
Q Consensus 27 ~~i~~~i~~A~~~g~dlvv~PE~~~~g 53 (198)
+.+.+.+.++.++|..+++|||..-+.
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs~ 114 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRSR 114 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCC
Confidence 455566777778899999999987653
No 92
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=61.95 E-value=34 Score=20.85 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
...+++++|+++|.+.+.+-+..... ....+.+.+++.++.++.|..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~---------------------~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLF---------------------GAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCccc---------------------CHHHHHHHHHHcCCeEEEEEE
Confidence 57789999999999999998876321 113455666778999998864
No 93
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=60.95 E-value=24 Score=28.81 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=47.1
Q ss_pred HHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCC
Q 029167 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (198)
Q Consensus 35 ~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G 113 (198)
.|.-.++++++|=|-+.. ..+.. .....+.|++++++.+.+|++++....+ ..+.+.++++ .+|
T Consensus 149 ~aL~~~P~lliLDEPt~G-LDp~~-------------~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il-~~G 213 (293)
T COG1131 149 LALLHDPELLILDEPTSG-LDPES-------------RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL-NDG 213 (293)
T ss_pred HHHhcCCCEEEECCCCcC-CCHHH-------------HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE-eCC
Confidence 344557899999996643 22111 1466788999999887888887665433 4457778888 589
Q ss_pred Ceeeee
Q 029167 114 SDLGLY 119 (198)
Q Consensus 114 ~il~~y 119 (198)
+++..-
T Consensus 214 ~~~~~g 219 (293)
T COG1131 214 KIIAEG 219 (293)
T ss_pred EEEEeC
Confidence 876554
No 94
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=60.85 E-value=28 Score=25.69 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=24.4
Q ss_pred CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 40 GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 40 g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+..+++|||..-+.. .+.-.-...+|++.++.|+-
T Consensus 95 ~~~l~IFPEGtR~~~------------------~~fk~G~~~lA~~~~~PIvP 129 (163)
T cd07988 95 EFVLAIAPEGTRSKV------------------DKWKTGFYHIARGAGVPILL 129 (163)
T ss_pred CcEEEEeCCCCCCCC------------------cChhhHHHHHHHHcCCCEEE
Confidence 457999999876531 12334567788888988874
No 95
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=60.65 E-value=35 Score=27.57 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhh-------hHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR-------EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~-------~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
-+-++++.+.+++..+. ..+-+.| .+++-.+..+.. .+|......+. -+.+++++.|+++.++...|-.
T Consensus 156 PdELeKm~~~Vd~i~~~-~~~~~~P-lFIsvDPeRD~~~~~~eY~~eF~pkllGLT--GT~eqvk~vak~yRVYfs~gp~ 231 (280)
T KOG2792|consen 156 PDELEKMSAVVDEIEAK-PGLPPVP-LFISVDPERDSVEVVAEYVSEFHPKLLGLT--GTTEQVKQVAKKYRVYFSTGPK 231 (280)
T ss_pred hHHHHHHHHHHHHHhcc-CCCCccc-eEEEeCcccCCHHHHHHHHHhcChhhhccc--CCHHHHHHHHHHhEEeeccCCC
Confidence 35588888888886443 3333334 344433333322 23333222232 4678999999999999988654
Q ss_pred eccCCe---eEEEEEEEcCCCCeeeeeeecc
Q 029167 96 EEANNA---HYNSIAIIDADGSDLGLYRKSH 123 (198)
Q Consensus 96 ~~~~~~---~yNs~~~i~~~G~il~~y~K~~ 123 (198)
...++= ..--.+++||+|+.+..|-+.+
T Consensus 232 d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 232 DEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred CCCCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 432221 2234689999999887776543
No 96
>PRK12677 xylose isomerase; Provisional
Probab=60.33 E-value=89 Score=26.73 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEeCCCCCCccCcch-hhhHHHHhcCCCCCChHHHHHHHHHHH--hCCEEEE
Q 029167 24 TNLATAERLVRAAHGKGAN-IILIQELFEGYYFCQA-QREDFFQRAKPYKDHPTILKMQELAKE--LGVVMPV 92 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~d-lvv~PE~~~~g~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~a~~--~~i~iv~ 92 (198)
..++.+.+.|+.|.+-|++ +++||=.-.+.|.... ....+... .+.++.+.+.|++ +++.+.+
T Consensus 111 ~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~------~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 111 YALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRY------REAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHH------HHHHHHHHHHHHhcCCCcEEEE
Confidence 4467788889999998988 5555543222122111 11111111 2555677777777 4587766
No 97
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=59.57 E-value=15 Score=29.32 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=48.2
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHH-HHHHHHHHhCCEEEEeee-ecc--CCeeEEEEEEEcC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL-KMQELAKELGVVMPVSFF-EEA--NNAHYNSIAIIDA 111 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~-~l~~~a~~~~i~iv~g~~-~~~--~~~~yNs~~~i~~ 111 (198)
..+.||+++.+|-.|..-- + ....+ .++.-|.+.+++++...- -+. ...-|--.+++||
T Consensus 182 LR~~gA~iLtyPSAFT~~T--G---------------~AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDP 244 (295)
T KOG0807|consen 182 LRKMGAQILTYPSAFTIKT--G---------------EAHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDP 244 (295)
T ss_pred HHHcCCcEEeccchhhhcc--c---------------HHHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcc
Confidence 3467999999998765211 1 11112 366778899999997432 222 2446777899999
Q ss_pred CCCeeeeeeecc
Q 029167 112 DGSDLGLYRKSH 123 (198)
Q Consensus 112 ~G~il~~y~K~~ 123 (198)
-|.+++++....
T Consensus 245 WGtVva~~se~~ 256 (295)
T KOG0807|consen 245 WGTVVARCSERT 256 (295)
T ss_pred hhhhheecCCCC
Confidence 999999987664
No 98
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=58.82 E-value=67 Score=25.67 Aligned_cols=68 Identities=22% Similarity=0.125 Sum_probs=40.8
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcC
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~ 111 (198)
..+....+|+|+|+.|=.... +.... . ........+..|.+++++++.... .| .+.+++|
T Consensus 168 ~~r~~~~~ga~iil~ps~~~~-~~~~~---------~---~~~~~~~~~arA~en~~~vv~~n~---~G----~S~ivdp 227 (270)
T cd07571 168 LVRDAVRQGADLLVNITNDAW-FGDSA---------G---PYQHLAMARLRAIETGRPLVRAAN---TG----ISAVIDP 227 (270)
T ss_pred HHHhhcccCCCEEEEcCcccc-cCCCc---------c---hHHHHHHHHHHHHHhCCCEEEEcC---Ce----eeEEECC
Confidence 345555679999999864211 11000 0 012234456778999999986531 12 3778899
Q ss_pred CCCeeeee
Q 029167 112 DGSDLGLY 119 (198)
Q Consensus 112 ~G~il~~y 119 (198)
+|+++..-
T Consensus 228 ~G~ii~~~ 235 (270)
T cd07571 228 DGRIVARL 235 (270)
T ss_pred CCcEEeec
Confidence 99987653
No 99
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=58.67 E-value=31 Score=26.52 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.+.+.+.+.. ++.++|-.++||||..-+..... +.+.. ..+.-.-...+|.+.++.|+-
T Consensus 83 ~~~~~~~~~~-~~L~~G~~l~IFPEGtrs~~~~~-----~g~~~----~~~fk~G~~~lA~~~~~pIvP 141 (210)
T cd07986 83 KNRESLREAL-RHLKNGGALIIFPAGRVSTASPP-----FGRVS----DRPWNPFVARLARKAKAPVVP 141 (210)
T ss_pred hhHHHHHHHH-HHHhCCCEEEEECCccccccccc-----CCccc----cCCccHHHHHHHHHHCCCEEE
Confidence 3444444444 44456889999999876532210 00000 012335567788889998874
No 100
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=57.58 E-value=57 Score=26.04 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.+..++.+.+.++.|.+-|++.|++.-..... .. .++..+.. -+.++.+.+.|+++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~---~~-~~~~~~~~-----~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLG---QS-KEEGLKRV-----IEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC---CC-HHHHHHHH-----HHHHHHHHHhccCCCCEEEE
Confidence 56678888999999999999998874332211 11 11221111 25566777777889999887
No 101
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=56.93 E-value=57 Score=24.38 Aligned_cols=63 Identities=24% Similarity=0.182 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEE
Q 029167 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (198)
Q Consensus 21 ~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv 91 (198)
+.+.-.+.+.++++++.+.++.+|++--.....+.... ..... ...+.+.++++|+++++.++
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~------~~~~~--~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG------KVEDT--LGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC------ccccc--chhHHHHHHHHHHHhCCCEE
Confidence 34555666666677676778888886211111111100 00111 14677899999999998885
No 102
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=54.66 E-value=23 Score=26.30 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHhCCEEEE-eeeec-----cC--------C----eeEEEEEEEcCCCCeeeeeeeccC
Q 029167 73 HPTILKMQELAKELGVVMPV-SFFEE-----AN--------N----AHYNSIAIIDADGSDLGLYRKSHI 124 (198)
Q Consensus 73 ~~~~~~l~~~a~~~~i~iv~-g~~~~-----~~--------~----~~yNs~~~i~~~G~il~~y~K~~l 124 (198)
.+.....+++++++++..-+ +-+.. .+ + ..--+.++|+++|.|...+++...
T Consensus 72 ~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~ 141 (157)
T COG1225 72 PDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKV 141 (157)
T ss_pred CCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCC
Confidence 45556777778777776533 32211 00 1 356788999999999888866543
No 103
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=54.03 E-value=33 Score=21.14 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeee
Q 029167 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 76 ~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~ 117 (198)
-..+.++..+..+.++-|+.- ..|+.|++.++++.++++-.
T Consensus 18 ~~~~~~Ll~~gkT~~ikGF~S-K~Gk~F~A~L~l~~~~~v~F 58 (62)
T PF13342_consen 18 DEEVKELLEKGKTGLIKGFKS-KKGKPFDAYLVLDDDKKVKF 58 (62)
T ss_pred HHHHHHHHHcCCccCccCccc-CCCCEEeEEEEEcCCCeEEe
Confidence 367888888877777778766 57889999999987666433
No 104
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=53.67 E-value=1.1e+02 Score=24.88 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=27.0
Q ss_pred HHHHHHHhCCEEEEeeee--ccCCeeEEEEEEEcCCCCeeee
Q 029167 79 MQELAKELGVVMPVSFFE--EANNAHYNSIAIIDADGSDLGL 118 (198)
Q Consensus 79 l~~~a~~~~i~iv~g~~~--~~~~~~yNs~~~i~~~G~il~~ 118 (198)
++.-|.+++++++..... ..+..++=...+++|+|+++..
T Consensus 219 ~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vla~ 260 (302)
T cd07569 219 MQAGAYQNGTWVVAAAKAGMEDGCDLIGGSCIVAPTGEIVAQ 260 (302)
T ss_pred HhhhhhcccceEEEeeccccCCCceEecceEEECCCCCEEEe
Confidence 344577889999864332 2234566678889999998644
No 105
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=53.05 E-value=58 Score=23.56 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEE
Q 029167 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (198)
Q Consensus 21 ~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv 91 (198)
+.+.-.+.+.++++++.+.++.+|+..=...+.+. ..+ .....+.++++|+++++.++
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~~~~~~~~-----~~~--------~~~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGMQAPPNYG-----PRY--------TRRFAAIYPELAEEYGVPLV 139 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccc-----hHH--------HHHHHHHHHHHHHHcCCcEe
Confidence 35566667777777777778888875211011110 011 03556778899999887665
No 106
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.35 E-value=72 Score=24.41 Aligned_cols=46 Identities=9% Similarity=0.090 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcC-CCCeeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA-DGSDLGLY 119 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~-~G~il~~y 119 (198)
...+.|.++.++.+..+++....... ..+.+..++++. +|++....
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 44456666666667777665444332 345567777854 68876543
No 107
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=51.44 E-value=72 Score=23.76 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
.++-.+.++..++.|.|-||+.-....+..... .++...-......+.++.+-++|.++|+.+.+|...
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yp--s~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWTGYGGFAFYP--SKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeecCCcccCC--ccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 445566777777789999999876655533221 111000011122578899999999999999999775
No 108
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=51.13 E-value=1.1e+02 Score=24.34 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=35.6
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-c-----CCeeEEEE
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-----NNAHYNSI 106 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~-----~~~~yNs~ 106 (198)
.+....+|+|+|+.|-.+..... . ......++..|.+++++++...-.- . +...+-.+
T Consensus 162 ~r~l~~~ga~ii~~ps~~~~~~~-------~---------~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S 225 (280)
T cd07574 162 ARALAEAGADLLLVPSCTDTRAG-------Y---------WRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQA 225 (280)
T ss_pred HHHHHHcCCCEEEECCcCCcccc-------H---------HHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccc
Confidence 34555679999999864322110 0 1122235667888899988643221 1 12344456
Q ss_pred EEEcCC
Q 029167 107 AIIDAD 112 (198)
Q Consensus 107 ~~i~~~ 112 (198)
.+++|+
T Consensus 226 ~i~~P~ 231 (280)
T cd07574 226 AVYTPC 231 (280)
T ss_pred eeecCC
Confidence 677775
No 109
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=50.42 E-value=63 Score=22.54 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.4
Q ss_pred EEEEEEcCCCCeeeeee
Q 029167 104 NSIAIIDADGSDLGLYR 120 (198)
Q Consensus 104 Ns~~~i~~~G~il~~y~ 120 (198)
.+.++|+++|++...|+
T Consensus 125 ~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 125 AAIYLVDPDGKLVRYYG 141 (142)
T ss_pred ceEEEECCCCCEEEeec
Confidence 36899999999988775
No 110
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=50.07 E-value=73 Score=24.54 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g 93 (198)
....+.+.+..+. .++|-.+++|||..-+.. .. . .+...-...+|++.++.|+--
T Consensus 106 ~~~~~~~~~~~~~-l~~g~~v~IfPEGtr~~~--~~-------~------~~f~~G~~~lA~~~~~pIvPv 160 (214)
T PLN02901 106 RSQLECLKRCMEL-LKKGASVFFFPEGTRSKD--GK-------L------AAFKKGAFSVAAKTGVPVVPI 160 (214)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCC--Cc-------c------cCchhhHHHHHHHcCCCEEEE
Confidence 3344444444444 456889999999864311 10 0 122344556888889988753
No 111
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=49.41 E-value=83 Score=21.68 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh-CCEEEEee
Q 029167 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPVSF 94 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~-~i~iv~g~ 94 (198)
-+++...+++..+.|+|.|.|.---..+.... . =+..+.+.+..++. |+.++.|+
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~-----------~---CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG-----------P---CPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC-----------C---CCCHHHHHHHHHHHhCCCEeeec
Confidence 34566677777788999999976444322100 0 13356666665555 99998875
No 112
>PTZ00261 acyltransferase; Provisional
Probab=49.25 E-value=28 Score=29.49 Aligned_cols=53 Identities=8% Similarity=-0.090 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEE
Q 029167 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv 91 (198)
..+.+.+.+++..++|-.+++|||..-+.-... + .++-.-.-.+|.+.++.|+
T Consensus 200 a~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~gg~-----L---------~pFK~GaF~LAieagvPIV 252 (355)
T PTZ00261 200 KQAQVQQAIDAHLRLGGSLAFFPEGAINKHPQV-----L---------QTFRYGTFATIIKHRMEVY 252 (355)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCcCCcCCCCc-----C---------CCCcHHHHHHHHHcCCCEE
Confidence 344555566666778999999999876421100 0 1222335566777788874
No 113
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=48.84 E-value=69 Score=24.83 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 119 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y 119 (198)
...+.|.++.++.+.++++.....+.-...+..+++ .+|+++..+
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l-~~G~i~~~~ 227 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEE-ECCEEEEEe
Confidence 344556666555577776654443221122455677 478876554
No 114
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=48.58 E-value=54 Score=26.48 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeecc-CCeeEEEE
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSI 106 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~-~~~~yNs~ 106 (198)
+..-++..|..++++++++=|-...- . +.. .-+.++.+++++++.++++++-..... .-++-...
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~L-D-------i~~------Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHL-D-------IAH------QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCcccc-C-------HHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 44556777888999999999955421 1 111 136778899999999999988766543 24555666
Q ss_pred EEEcCCCCeee
Q 029167 107 AIIDADGSDLG 117 (198)
Q Consensus 107 ~~i~~~G~il~ 117 (198)
+++ .+|++..
T Consensus 210 i~l-k~G~i~a 219 (258)
T COG1120 210 ILL-KDGKIVA 219 (258)
T ss_pred EEE-ECCeEEe
Confidence 677 5788643
No 115
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=47.61 E-value=68 Score=27.07 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=48.6
Q ss_pred HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeecc-CCeeEEEEEEEcCC
Q 029167 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDAD 112 (198)
Q Consensus 34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~-~~~~yNs~~~i~~~ 112 (198)
.+|.+.++|+++.-|.|..-.+ +-..+..++|.++-++.+-+|++=+...+ .-++=+...+. .+
T Consensus 176 ARAla~~~~IlLMDEaFSALDP--------------LIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim-kd 240 (386)
T COG4175 176 ARALANDPDILLMDEAFSALDP--------------LIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM-KD 240 (386)
T ss_pred HHHHccCCCEEEecCchhhcCh--------------HHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe-cC
Confidence 3466779999999997754222 11256778899998888888887554443 34666777888 78
Q ss_pred CCeeee
Q 029167 113 GSDLGL 118 (198)
Q Consensus 113 G~il~~ 118 (198)
|+++..
T Consensus 241 G~ivQ~ 246 (386)
T COG4175 241 GEIVQV 246 (386)
T ss_pred CeEEEe
Confidence 987643
No 116
>PRK08392 hypothetical protein; Provisional
Probab=47.59 E-value=54 Score=25.32 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 27 ~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
.++.+.+++|.+.|.+.+.+-|.+..... .++ ..+.+.+.++.++.++.|+.|.-.
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~-----~~~---------~~y~~~i~~l~~~~~i~il~GiE~ 69 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTP-----SKF---------NAYINEIRQWGEESEIVVLAGIEA 69 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccch-----hhH---------HHHHHHHHHHhhccCceEEEeEEe
Confidence 45788999999999999999998753211 011 245566767666678888888664
No 117
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=45.92 E-value=53 Score=27.63 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhC
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~ 87 (198)
...+++++.+.++.+++.+.|+++.|= +++|+. ++....+.+.|.+.|
T Consensus 237 ~dYdv~kvle~aE~i~~a~idvlIaPv-~lPG~N-----------------D~E~~~iIe~A~~iG 284 (414)
T COG2100 237 KDYDVKKVLEVAEYIANAGIDVLIAPV-WLPGVN-----------------DDEMPKIIEWAREIG 284 (414)
T ss_pred cccCHHHHHHHHHHHHhCCCCEEEeee-ecCCcC-----------------hHHHHHHHHHHHHhC
Confidence 356788888889988889999999994 566664 344566778888765
No 118
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=45.81 E-value=61 Score=27.20 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=42.4
Q ss_pred HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCC
Q 029167 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDAD 112 (198)
Q Consensus 34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~ 112 (198)
..|...+++++++=|-+.. ..+.. .....+.|+++.++.++++++-+.+.+. ..+.+.+++++ +
T Consensus 152 ARAL~~~P~iLLlDEPts~-LD~~t-------------~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~-~ 216 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSA-LDPAT-------------TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS-N 216 (343)
T ss_pred HHHHHhCCCEEEEeCCccc-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-C
Confidence 3345557888888886543 11110 1345567777777778888876555433 34567778884 7
Q ss_pred CCeee
Q 029167 113 GSDLG 117 (198)
Q Consensus 113 G~il~ 117 (198)
|+++.
T Consensus 217 G~iv~ 221 (343)
T TIGR02314 217 GELIE 221 (343)
T ss_pred CEEEE
Confidence 88753
No 119
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=45.67 E-value=1.2e+02 Score=23.53 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~i 115 (198)
|...+++++++=|-+.. ..... .....+.|.+++++.+.++++.....+.-...+..+++ .+|++
T Consensus 146 al~~~p~llllDEP~~~-LD~~~-------------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l-~~G~i 210 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVG-LDPAS-------------RAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVL-HRGRV 210 (236)
T ss_pred HHhcCCCEEEEcCCccC-CCHHH-------------HHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEE-eCCeE
Confidence 34446778877775432 11110 02444667777665567776655443322235677788 47886
Q ss_pred ee
Q 029167 116 LG 117 (198)
Q Consensus 116 l~ 117 (198)
..
T Consensus 211 ~~ 212 (236)
T TIGR03864 211 LA 212 (236)
T ss_pred EE
Confidence 53
No 120
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.57 E-value=46 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHhCCEEEEe
Q 029167 73 HPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 73 ~~~~~~l~~~a~~~~i~iv~g 93 (198)
......+++.|++++++++..
T Consensus 61 H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 61 HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hHHHHHHHHHHHHcCCcEEEE
Confidence 677889999999999999864
No 121
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=45.38 E-value=53 Score=26.49 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCc-EEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 25 NLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g~d-lvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+.+...++++.|.+.|+| +++.|-.+... . .....+.+++++...++.+++
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~---~--------------~~~l~~~~~~ia~~~~~pi~l 131 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYYNKP---S--------------QEGLYAHFKAIAEATDLPVIL 131 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccCCC---C--------------HHHHHHHHHHHHhcCCCCEEE
Confidence 566778888888889999 56665543221 1 135567777777766777765
No 122
>smart00642 Aamy Alpha-amylase domain.
Probab=45.10 E-value=1e+02 Score=22.86 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCcc---Ccchh-hhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec
Q 029167 26 LATAERLVRAAHGKGANIILIQELFEGYY---FCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE 97 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~~g~---~~~~~-~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~ 97 (198)
++.+.+.+...++.|++.|.++=.+-.+. ..... ..++..........+.++.+.+.+.+.|+.+++=....
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 55555556666778999998876533221 11110 12333333333335667888888889999999865543
No 123
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=45.09 E-value=70 Score=25.78 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeecc-CCeeEEEEEE
Q 029167 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAI 108 (198)
Q Consensus 30 ~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~-~~~~yNs~~~ 108 (198)
+-++.+|..+++|++++=|-+.. -.... ....++.|.++.++ |++|+.-..... -..+++.+++
T Consensus 147 RV~lARAL~~~p~lllLDEP~~g-vD~~~-------------~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~ 211 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTG-VDVAG-------------QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVIC 211 (254)
T ss_pred HHHHHHHhccCCCEEEecCCccc-CCHHH-------------HHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEE
Confidence 34667788889999999996643 21111 13667888888888 888887544432 2456677777
Q ss_pred Ec
Q 029167 109 ID 110 (198)
Q Consensus 109 i~ 110 (198)
++
T Consensus 212 Ln 213 (254)
T COG1121 212 LN 213 (254)
T ss_pred Ec
Confidence 74
No 124
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=43.42 E-value=62 Score=26.18 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE-eee
Q 029167 24 TNLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFF 95 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~d-lvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~-g~~ 95 (198)
.+.+...++.+.|.+.|+| +++.|-++... . .....+.+++++...++.+++ -.|
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~---~--------------~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPYYNKP---T--------------QEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC---C--------------HHHHHHHHHHHHhcCCCCEEEEECc
Confidence 3567788888888889988 55555443321 1 135567777777776777765 444
No 125
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=43.36 E-value=85 Score=24.34 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=38.3
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.+++++.+.++++....... ..+.+..+++. +|+
T Consensus 128 al~~~p~lllLDEPt~g-LD~~~-------------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~ 192 (230)
T TIGR01184 128 ALSIRPKVLLLDEPFGA-LDALT-------------RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLT-NGP 192 (230)
T ss_pred HHHcCCCEEEEcCCCcC-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe-CCc
Confidence 44457788888884432 11110 0244466777777667777765554432 34556777884 788
Q ss_pred ee
Q 029167 115 DL 116 (198)
Q Consensus 115 il 116 (198)
++
T Consensus 193 i~ 194 (230)
T TIGR01184 193 AA 194 (230)
T ss_pred Ee
Confidence 65
No 126
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=43.04 E-value=1.6e+02 Score=23.11 Aligned_cols=61 Identities=8% Similarity=-0.063 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh-hhH-HHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-RED-FFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~-~~~-~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.+...+.+.+.++.|..-|+..|+.+= |....+. .++ +... .+.++.+.+.++++|+.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~----g~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLV----GKTPAGFSSEQIHATL------VENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC----CCCCCCCCHHHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 345567788899999999999887642 2211111 112 2221 25567788888999998877
No 127
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=43.02 E-value=33 Score=28.29 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.3
Q ss_pred cCCeeEEEEEEEcCCCCeeeeeeeccCCC
Q 029167 98 ANNAHYNSIAIIDADGSDLGLYRKSHIPD 126 (198)
Q Consensus 98 ~~~~~yNs~~~i~~~G~il~~y~K~~l~~ 126 (198)
+....||...+||-+|....+|+|.++..
T Consensus 123 ~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 123 DGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred chhheeeeeEEeccCCccceeeeeeeccC
Confidence 34578999999999999999999999865
No 128
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=42.96 E-value=40 Score=25.65 Aligned_cols=25 Identities=20% Similarity=-0.005 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCC
Q 029167 28 TAERLVRAAHGKGANIILIQELFEG 52 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~ 52 (198)
...+.+.++.++|-.+++|||...+
T Consensus 98 ~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 98 AVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3445555666778999999998864
No 129
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.50 E-value=85 Score=23.90 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.+.+++++.+.++++....... ..+.+..++++ +|++.
T Consensus 169 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~ 211 (214)
T cd03297 169 QLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME-DGRLQ 211 (214)
T ss_pred HHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-CCEEE
Confidence 44466677776667777665544322 24456677774 67753
No 130
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=42.13 E-value=1.2e+02 Score=25.05 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEE
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSI 106 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~ 106 (198)
+++..+..|.-...+++.+-|-.+.-.- . +. ....+.+++..++++.+|+..+....+ ...-+..
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTvgLDV--------~--aq----~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv 227 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTVGLDV--------N--AQ----ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV 227 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCccCcch--------h--HH----HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhhe
Confidence 3344444444457899999997764211 0 10 245577888889999999987665544 5677888
Q ss_pred EEEcCCCCeee
Q 029167 107 AIIDADGSDLG 117 (198)
Q Consensus 107 ~~i~~~G~il~ 117 (198)
++|+ .|+++.
T Consensus 228 ~~I~-~Gqlv~ 237 (325)
T COG4586 228 LLID-QGQLVF 237 (325)
T ss_pred EEee-CCcEee
Confidence 9995 798764
No 131
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=42.05 E-value=1.4e+02 Score=24.09 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe
Q 029167 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g 93 (198)
...+.+.++.|.++++++|...=.+... +. ..++...+.+.++++++++.+++.
T Consensus 76 ~~~i~~ai~~a~~~g~~Vin~S~g~~~~-~~-------------~~~~~~~~ai~~a~~~~GvlvVaA 129 (275)
T cd05562 76 ELDFAAAIRALAAAGADIIVDDIGYLNE-PF-------------FQDGPIAQAVDEVVASPGVLYFSS 129 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccCC-Cc-------------ccCCHHHHHHHHHHHcCCcEEEEe
Confidence 4567888889999999999876433211 10 011344456666666569999874
No 132
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.46 E-value=73 Score=26.24 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh-CCEEEE-eee
Q 029167 24 TNLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPV-SFF 95 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~d-lvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~-~i~iv~-g~~ 95 (198)
.+.+...++++.|.+.|+| ++|.|-+.... . .....+.+++++... ++++++ -.|
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~---~--------------~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLPL---D--------------VDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCCC---C--------------HHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 3467778888888888988 66666543321 1 135667778888777 577765 444
No 133
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=41.06 E-value=90 Score=23.83 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+..+++.......-...+.++++. +|+++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~-~G~i~ 220 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMK-DGQLF 220 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEe-CCEec
Confidence 3445666666665677666544332212247777774 67653
No 134
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=40.28 E-value=1.8e+02 Score=22.74 Aligned_cols=61 Identities=7% Similarity=-0.043 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
...+.+.+.++.|.+-|+..|..+-...++ ....++..+.. -+.++.+.+.|+++|+.+.+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~---~~~~~~~~~~~-----~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKRPA---GVSPEEARATL-----VENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCCCC---CCCHHHHHHHH-----HHHHHHHHHHHHhcCCEEEE
Confidence 345677788888988899988754322211 10011222111 25567788889999999887
No 135
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=40.08 E-value=1.1e+02 Score=20.28 Aligned_cols=46 Identities=9% Similarity=0.019 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 119 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y 119 (198)
+.++.+.+.+++.|+.+..+-.......-...+++.||+|..+..+
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 115 (120)
T cd08362 70 ADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFS 115 (120)
T ss_pred HHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEE
Confidence 5667777777888998765421121111234688999999877554
No 136
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.93 E-value=1.1e+02 Score=23.11 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|++++++.+..+++....... ..+.+..+++. +|++.
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i~ 208 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD-NGRIA 208 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-CCEEe
Confidence 44466777766667777765544332 34556777784 67753
No 137
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=39.70 E-value=1.4e+02 Score=23.67 Aligned_cols=58 Identities=17% Similarity=0.065 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
....+.+.++.|.+.|+|+|-++-.+..+... . . ..+.++...+.|.+.++.++++.-
T Consensus 87 ~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~-----------~-~-~~~~l~~ai~~A~~~GilvvaaAG 144 (247)
T cd07491 87 TPQSAAKAIEAAVEKKVDIISMSWTIKKPEDN-----------D-N-DINELENAIKEALDRGILLFCSAS 144 (247)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeeeeccccccc-----------c-c-chHHHHHHHHHHHhCCeEEEEecC
Confidence 45678899999999999999998543321100 0 0 023344444456667999887543
No 138
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.61 E-value=1e+02 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++....... ..+.+..+++. +|+++
T Consensus 182 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~G~i~ 224 (241)
T cd03256 182 QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-DGRIV 224 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 44566777776667777765554332 33567778884 78864
No 139
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=38.75 E-value=92 Score=25.16 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCcEE-EeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE-eee
Q 029167 25 NLATAERLVRAAHGKGANII-LIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFF 95 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g~dlv-v~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~-g~~ 95 (198)
+.+...++++.|.+.|+|-+ +.|-++.. .. .....+.+++++...++++++ -.|
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~-~s----------------~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFK-PS----------------QEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSS-CC----------------HHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred hHHHHHHHHHHHhhcCceEEEEecccccc-ch----------------hhHHHHHHHHHHhhcCCCEEEEECC
Confidence 35667777788888899954 45433321 11 135678889999888899987 444
No 140
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=38.66 E-value=82 Score=25.32 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=48.0
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeecc-CCeeEEEEEEEc
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~-~~~~yNs~~~i~ 110 (198)
.|.+|..+++++|+-=|-.-+-.+ .......+.|++++++.|+++++.....+ -.+|...++-+
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp--------------~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl- 221 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDP--------------ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGL- 221 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccCh--------------hhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEe-
Confidence 556677789999999885443211 12257778999999999999999866432 34555666666
Q ss_pred CCCCee
Q 029167 111 ADGSDL 116 (198)
Q Consensus 111 ~~G~il 116 (198)
.+|+++
T Consensus 222 ~~G~iv 227 (258)
T COG3638 222 KAGRIV 227 (258)
T ss_pred cCCcEE
Confidence 467754
No 141
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.55 E-value=89 Score=25.30 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.+++++.+.++++-...... ..+.+.++++ .+|+++.
T Consensus 183 ~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l-~~G~i~~ 226 (290)
T PRK13634 183 EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM-HKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEE
Confidence 45566777777778887776554332 3456777888 4788653
No 142
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=38.34 E-value=1.5e+02 Score=24.89 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCC----CCc------c------CcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167 20 DDVSTNLATAERLVRAAHGKGANIILIQELF----EGY------Y------FCQAQREDFFQRAKPYKDHPTILKMQELA 83 (198)
Q Consensus 20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~----~~g------~------~~~~~~~~~~~~a~~~~~~~~~~~l~~~a 83 (198)
.|-..+++...++|+.|++.|||.|=|.=+. ... | ....+. ++.+..+ + ..+-.++|.+.+
T Consensus 9 ~NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-l-~~e~~~~L~~~~ 85 (329)
T TIGR03569 9 VNHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQL-EMLKKLE-L-SEEDHRELKEYC 85 (329)
T ss_pred CCccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHH-HHHHHhC-C-CHHHHHHHHHHH
Confidence 4555678999999999999999998776431 000 0 000111 2223232 2 257788999999
Q ss_pred HHhCCEEEEeeee
Q 029167 84 KELGVVMPVSFFE 96 (198)
Q Consensus 84 ~~~~i~iv~g~~~ 96 (198)
++.|+.++..-..
T Consensus 86 ~~~Gi~~~stpfd 98 (329)
T TIGR03569 86 ESKGIEFLSTPFD 98 (329)
T ss_pred HHhCCcEEEEeCC
Confidence 9999999876443
No 143
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=38.32 E-value=1.2e+02 Score=20.21 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~ 120 (198)
+.++.+.+..++.|+.+...-.........++.++.||+|..+..+.
T Consensus 70 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 70 EEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred HHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEE
Confidence 44666677777788887653211112223467889999998876554
No 144
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=38.25 E-value=49 Score=25.36 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=11.8
Q ss_pred CCCcEEEeCCCCCC
Q 029167 39 KGANIILIQELFEG 52 (198)
Q Consensus 39 ~g~dlvv~PE~~~~ 52 (198)
+|-.+++|||...+
T Consensus 96 ~g~~v~iFPEGtrs 109 (211)
T cd07991 96 NWPPILIFPEGTTT 109 (211)
T ss_pred CCCeEEEecCcccc
Confidence 46889999998775
No 145
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.24 E-value=1.2e+02 Score=23.03 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+..+++....... ..+.+..+++. +|++.
T Consensus 168 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~i~ 210 (213)
T cd03259 168 ELREELKELQRELGITTIYVTHDQEEALALADRIAVMN-EGRIV 210 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE-CCEEE
Confidence 44466677666667777765544332 34556677774 67653
No 146
>PRK14014 putative acyltransferase; Provisional
Probab=37.97 E-value=43 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCC
Q 029167 26 LATAERLVRAAHGKGANIILIQELFE 51 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~ 51 (198)
.+.+.+..++..+.+..+++|||..-
T Consensus 160 ~~~~~~a~~~~~~~~~~l~IFPEGTR 185 (301)
T PRK14014 160 LETTRRACEKFKRMPTTIVNFVEGTR 185 (301)
T ss_pred HHHHHHHHHHHhcCCcEEEEecccee
Confidence 44555555555566889999999865
No 147
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.94 E-value=97 Score=24.90 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=38.7
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~i 115 (198)
|...+++++++=|-+.. .... . .....+.+.+++++.+.++++-......-...+..+++ .+|++
T Consensus 154 al~~~p~lLlLDEPt~~-LD~~---------~----~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l-~~G~i 218 (279)
T PRK13650 154 AVAMRPKIIILDEATSM-LDPE---------G----RLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVM-KNGQV 218 (279)
T ss_pred HHHcCCCEEEEECCccc-CCHH---------H----HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEE
Confidence 44456777777775542 1110 0 13455667777776677777655543322356777888 47886
Q ss_pred ee
Q 029167 116 LG 117 (198)
Q Consensus 116 l~ 117 (198)
..
T Consensus 219 ~~ 220 (279)
T PRK13650 219 ES 220 (279)
T ss_pred EE
Confidence 53
No 148
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=37.88 E-value=1.6e+02 Score=21.50 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhC-CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec
Q 029167 26 LATAERLVRAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE 97 (198)
Q Consensus 26 ~~~i~~~i~~A~~~-g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~ 97 (198)
.+.+... .++.++ |..+++|||....... . .. .....-...+|++.++.|+.-....
T Consensus 87 ~~~~~~~-~~~l~~~g~~v~ifPeG~~~~~~-~-------~~------~~~~~g~~~la~~~~~~IvPv~i~~ 144 (187)
T cd06551 87 AKSLKYV-ARLLSKPGSVVWIFPEGTRTRRD-K-------RP------LQFKPGVAHLAEKAGVPIVPVALRY 144 (187)
T ss_pred HHHHHHH-HHHHhcCCcEEEEeCCcccCCCC-C-------Cc------ccccchHHHHHHHcCCcEEEEEEec
Confidence 3334444 444455 8899999998754321 0 00 1233557778888899988644443
No 149
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.76 E-value=1.2e+02 Score=23.11 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++++..+++....... ..+.+..+++ .+|+++
T Consensus 169 ~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l-~~G~i~ 211 (220)
T cd03265 169 HVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAII-DHGRII 211 (220)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-eCCEEE
Confidence 44456677766667777665444322 3445677788 478864
No 150
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=37.68 E-value=1.2e+02 Score=22.61 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=39.6
Q ss_pred EEEEEeCCCC-----CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHH
Q 029167 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (198)
Q Consensus 10 ~ia~~Q~~~~-----~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~ 84 (198)
.+.+++.... .+.++..+.+.++++++.+.++++++++-. +++.. .. .+. ...-+.++++|+
T Consensus 73 d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~-~P~~~-~~---~~~--------~~~~~~~~~~a~ 139 (191)
T PRK10528 73 RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIR-LPANY-GR---RYN--------EAFSAIYPKLAK 139 (191)
T ss_pred CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEee-cCCcc-cH---HHH--------HHHHHHHHHHHH
Confidence 4556666551 245666677777777777778888876411 11110 00 010 133456788899
Q ss_pred HhCCEEE
Q 029167 85 ELGVVMP 91 (198)
Q Consensus 85 ~~~i~iv 91 (198)
++++..+
T Consensus 140 ~~~v~~i 146 (191)
T PRK10528 140 EFDIPLL 146 (191)
T ss_pred HhCCCcc
Confidence 9987765
No 151
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=37.61 E-value=1.2e+02 Score=23.05 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCC
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGS 114 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~ 114 (198)
...+.+.+++++.+.++++.......-...+..+++. +|+
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~-~G~ 217 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELR-DGK 217 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEee-CCc
Confidence 4446667776655677766544332222566777773 564
No 152
>KOG1505 consensus Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases [Lipid transport and metabolism]
Probab=37.53 E-value=46 Score=28.09 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCC
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELF 50 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~ 50 (198)
+..+.+..+.+..+ ...-.|++|||.+
T Consensus 135 ~~~l~~~~k~l~~~-~~~~wLlLFPEGT 161 (346)
T KOG1505|consen 135 EKTLISLLKHLKDS-PDPYWLLLFPEGT 161 (346)
T ss_pred HHHHHHHHHHhccC-CCceEEEEecCCC
Confidence 34455555555554 3457899999987
No 153
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=37.48 E-value=29 Score=25.42 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g 93 (198)
..+-+-++++-|-+++.+....+-+++|...+.+....+.++.+.+..++.+..+-.|
T Consensus 66 v~d~~geiL~VSQFTL~a~~~KG~rPsF~~a~~~~~A~~ly~~fv~~l~~~~~~V~~G 123 (145)
T TIGR00256 66 VQQAGGEILSVSQFTLAADTKKGMRPSFSKGASPDRAEELYEYFVELCREKGMKVQTG 123 (145)
T ss_pred HHHCCCCEEEEECCcccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCceEC
Confidence 3445789999999999886656667788877766444566677777777765544444
No 154
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.48 E-value=2e+02 Score=22.47 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=42.7
Q ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCC-CcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167 8 EVVVSALQFACTDDVSTNLATAERLVRAAHGKG-ANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (198)
Q Consensus 8 ~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g-~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~ 86 (198)
..++.++..... + .+...+.++++.+.| +++|.+-|=.++. .++ ......++++++++
T Consensus 12 ~~~ly~It~~~~-~----~~~~~~~l~~al~~G~v~~vQlR~K~l~~-------~~~---------~~~a~~l~~l~~~~ 70 (221)
T PRK06512 12 RCRIVLVAPPIA-D----GAELAKLLRAALQGGDVASVILPQYGLDE-------ATF---------QKQAEKLVPVIQEA 70 (221)
T ss_pred CCeEEEEeCCCc-c----cccHHHHHHHHHcCCCccEEEEeCCCCCH-------HHH---------HHHHHHHHHHHHHh
Confidence 356666665432 1 134566788888889 6999998755431 112 24457788889999
Q ss_pred CCEEEEe
Q 029167 87 GVVMPVS 93 (198)
Q Consensus 87 ~i~iv~g 93 (198)
++.+++.
T Consensus 71 gv~liIN 77 (221)
T PRK06512 71 GAAALIA 77 (221)
T ss_pred CCEEEEe
Confidence 9999884
No 155
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=37.04 E-value=1.4e+02 Score=23.91 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.+++++.+.++++.......-...+..++++ +|+++.
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~-~G~i~~ 224 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMD-SGKVVM 224 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEE-CCEEEE
Confidence 4456677776666777776544433222256777774 787653
No 156
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=36.71 E-value=1.2e+02 Score=23.63 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEE
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIA 107 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~ 107 (198)
+.+..|.+|.+..+++.+|-|-...- .+++- ++.+.-++++|++-..-+++.--.......-|-++
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSAL------DPElV--------gEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~ 223 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSAL------DPELV--------GEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI 223 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccC------CHHHH--------HHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE
Confidence 33445666777788999998854431 11211 56778899999885555554433333334444455
Q ss_pred EEcCCCCe
Q 029167 108 IIDADGSD 115 (198)
Q Consensus 108 ~i~~~G~i 115 (198)
++ ++|.+
T Consensus 224 fL-h~G~i 230 (256)
T COG4598 224 FL-HQGKI 230 (256)
T ss_pred Ee-eccee
Confidence 55 56754
No 157
>PRK07534 methionine synthase I; Validated
Probab=36.64 E-value=2.6e+02 Score=23.48 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCC
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANN 100 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~ 100 (198)
.++-.+.....++...+.|+|+++|-=+.. + .....+.+++++.++++++++....++
T Consensus 126 ~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~-----------l----------~E~~a~~~~~~~~~~Pv~vSft~~~~g 183 (336)
T PRK07534 126 HALAVEAFHEQAEGLKAGGADVLWVETISA-----------P----------EEIRAAAEAAKLAGMPWCGTMSFDTAG 183 (336)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeccCC-----------H----------HHHHHHHHHHHHcCCeEEEEEEECCCC
Confidence 455566666667766788999999853222 1 223445556666788888888775544
No 158
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=36.29 E-value=1.2e+02 Score=23.13 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++....... ..+.+..+++ .+|++.
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 225 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM-YAGKIV 225 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE-eCCEEE
Confidence 44466777766656777665444332 2355677777 468753
No 159
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=36.13 E-value=2.8e+02 Score=23.73 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhCCCc-EEEeCCCCCCccCcch-hhhHHHHhcCCCCCChHHHHHHHHHHHh--CCEEEE
Q 029167 23 STNLATAERLVRAAHGKGAN-IILIQELFEGYYFCQA-QREDFFQRAKPYKDHPTILKMQELAKEL--GVVMPV 92 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~d-lvv~PE~~~~g~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~a~~~--~i~iv~ 92 (198)
+..++.+.+.++.|.+-|+. +++||-.....+.... ....+... .+.++.+.+.|++. ++.+.+
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~------~e~L~~lae~A~~~G~GV~laL 178 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRM------REALNLLAAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHH------HHHHHHHHHHHHhhCCCcEEEE
Confidence 45667778888888888987 5556653322222111 11122222 25567777777875 577776
No 160
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=36.07 E-value=1.6e+02 Score=24.44 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g 93 (198)
.+...+.+.+.++..++.|.+-|| |.+..++ +.-.+.++++|++.|+.|+.+
T Consensus 33 ~~~~~~~~~~El~~~k~~Gg~tiV--d~T~~g~------------------GRd~~~l~~is~~tGv~II~~ 84 (308)
T PF02126_consen 33 RDEDVEAAVAELKEFKAAGGRTIV--DATPIGL------------------GRDVEALREISRRTGVNIIAS 84 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEE--E--SGGG------------------TB-HHHHHHHHHHHT-EEEEE
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEE--ecCCccc------------------CcCHHHHHHHHHHhCCeEEEe
Confidence 445778888888888888988877 4443332 344578999999999999974
No 161
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.93 E-value=91 Score=26.12 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=49.7
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeecc-CCeeEEEEEEEc
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~-~~~~yNs~~~i~ 110 (198)
.|.+|...++++++.=|....-.+ . .....++.|+++-++.|++|+.=..+.+ =..+.|.+++++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP-~-------------TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDP-E-------------TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCCh-H-------------HHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee
Confidence 455677788999999997654221 1 1146667788888999999987655442 256778888884
Q ss_pred CCCCeeee
Q 029167 111 ADGSDLGL 118 (198)
Q Consensus 111 ~~G~il~~ 118 (198)
+|+++..
T Consensus 217 -~G~lvE~ 223 (339)
T COG1135 217 -QGRLVEE 223 (339)
T ss_pred -CCEEEEe
Confidence 7887644
No 162
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=35.93 E-value=2e+02 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCcc
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYY 54 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~ 54 (198)
.+.+++++..+.|+|.|...|.+.+..
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~ 171 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQI 171 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEeccccccc
Confidence 344455555667999999999776643
No 163
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=35.86 E-value=1e+02 Score=29.89 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+..+.+.++.++|-.++||||...+.-. . + .+...-...+|++.+++|+-
T Consensus 499 ~~~~~~~~~l~~g~~~~ifPeGt~~~~~--~-----------~--~~~~~g~~~~a~~~~~~i~p 548 (1146)
T PRK08633 499 ESLEFIRKALDDGEVVCIFPEGAITRNG--Q-----------L--NEFKRGFELIVKGTDVPIIP 548 (1146)
T ss_pred HHHHHHHHHHhCCCEEEEECCcCCCCCC--C-----------c--cchhHHHHHHHHHCCCCEEE
Confidence 3344444666778899999998765211 0 0 23445677788888888874
No 164
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.70 E-value=1.5e+02 Score=22.93 Aligned_cols=43 Identities=23% Similarity=0.199 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|++++++.+.++++....... ..+.+..+++. +|+++.
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~-~G~i~~ 217 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLY-DGKIVA 217 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEE-CCeEEE
Confidence 44456677666557777665444322 34567777884 788653
No 165
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=35.63 E-value=1e+02 Score=24.99 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEe-CCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE-eee
Q 029167 24 TNLATAERLVRAAHGKGANIILI-QELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFF 95 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~-PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~-g~~ 95 (198)
.+.+...++++.|.+.|+|-|+. |-.+... . .....+.+++++...++++++ -.|
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~---~--------------~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNKP---T--------------QEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCCC---C--------------HHHHHHHHHHHHhcCCCCEEEEECc
Confidence 35677888888888889885544 5433221 1 135567777777776777765 344
No 166
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.43 E-value=1.1e+02 Score=24.52 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~i 115 (198)
|...+++++++=|-+.. .... . .....+.|.+++++.+..+++.......-...+..+++ .+|++
T Consensus 157 al~~~P~llllDEPt~g-LD~~---------~----~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l-~~G~i 221 (282)
T PRK13640 157 ILAVEPKIIILDESTSM-LDPA---------G----KEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVL-DDGKL 221 (282)
T ss_pred HHHcCCCEEEEECCccc-CCHH---------H----HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEE
Confidence 44456778888775542 1110 0 02445667777766677777654433222345677777 47886
Q ss_pred ee
Q 029167 116 LG 117 (198)
Q Consensus 116 l~ 117 (198)
..
T Consensus 222 ~~ 223 (282)
T PRK13640 222 LA 223 (282)
T ss_pred EE
Confidence 53
No 167
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=35.18 E-value=48 Score=26.05 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=25.9
Q ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe
Q 029167 8 EVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILI 46 (198)
Q Consensus 8 ~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~ 46 (198)
.+||+++- |+..|...++++++.+.+.++|+||.
T Consensus 4 ~~kIl~iS-----DiHgn~~~le~l~~~~~~~~~D~vv~ 37 (224)
T cd07388 4 VRYVLATS-----NPKGDLEALEKLVGLAPETGADAIVL 37 (224)
T ss_pred eeEEEEEE-----ecCCCHHHHHHHHHHHhhcCCCEEEE
Confidence 35665553 77778888888888887789998775
No 168
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=35.16 E-value=71 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCc
Q 029167 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGY 53 (198)
Q Consensus 20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g 53 (198)
+.-....+.+..++.+|.++++++.+|-|.+.+|
T Consensus 115 G~~ndl~d~Le~~l~~A~~~~~~iyvFG~~F~~g 148 (206)
T PF10042_consen 115 GPDNDLNDDLEPYLQRAISDDATIYVFGEPFRPG 148 (206)
T ss_pred CCcchHHHHHHHHHHHHHhCCCEEEEECceecCC
Confidence 3345667788889999999999999999998776
No 169
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=34.92 E-value=2.3e+02 Score=22.46 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeC
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQ 47 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~P 47 (198)
.......+.++.++-.++|..+|-++
T Consensus 114 c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 114 TSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 44556677777777777788888777
No 170
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=34.54 E-value=45 Score=26.96 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 029167 20 DDVSTNLATAERLVRAAHGKGANIILIQELFE 51 (198)
Q Consensus 20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~ 51 (198)
.|+.....++.+.++...+..+|+|++.|+=.
T Consensus 6 wNVNgiRar~~~~~~~l~~~~pDVlclQEtK~ 37 (261)
T COG0708 6 WNVNGLRARLKKLLDWLEEEQPDVLCLQETKA 37 (261)
T ss_pred EehhhHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 44555566666667777777889999999744
No 171
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=34.53 E-value=1.3e+02 Score=23.15 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il 116 (198)
...+.|++++++.+..+++.......-...+..+++ .+|++.
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l-~~g~i~ 225 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRL-VNGQLQ 225 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 444566777666677776654433221224566777 367653
No 172
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=34.52 E-value=2.5e+02 Score=22.85 Aligned_cols=54 Identities=26% Similarity=0.267 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEE
Q 029167 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (198)
Q Consensus 30 ~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i 90 (198)
.++++...+.|+++|.+.|-+.+..... +..+.++.. +..+++.+..++.+..+
T Consensus 171 ~~~~~~~~~~G~d~i~i~d~~~~~~~is--p~~f~e~~~-----p~~k~i~~~i~~~g~~~ 224 (330)
T cd03465 171 IRYADALIEAGADGIYISDPWASSSILS--PEDFKEFSL-----PYLKKVFDAIKALGGPV 224 (330)
T ss_pred HHHHHHHHHhCCCEEEEeCCccccCCCC--HHHHHHHhh-----HHHHHHHHHHHHcCCce
Confidence 3344445556999999999765433111 234555543 56666666666655443
No 173
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=34.49 E-value=1.5e+02 Score=20.27 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee-e----
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-E---- 96 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~-~---- 96 (198)
+......+.++.++..+.++.+|...- ..+.. ....+.+++.++++++..-+-.. .
T Consensus 38 C~~~~p~l~~l~~~~~~~~~~vi~i~~---~~~~~----------------~~~~~~~~~~~~~~~~~~p~~~D~~~~~~ 98 (126)
T cd03012 38 CLHTLPYLTDLEQKYKDDGLVVIGVHS---PEFAF----------------ERDLANVKSAVLRYGITYPVANDNDYATW 98 (126)
T ss_pred HHHHHHHHHHHHHHcCcCCeEEEEecc---Ccccc----------------ccCHHHHHHHHHHcCCCCCEEECCchHHH
Confidence 455566667776666555666655421 00000 12235667777777664322111 0
Q ss_pred -ccCCeeEEEEEEEcCCCCeeeee
Q 029167 97 -EANNAHYNSIAIIDADGSDLGLY 119 (198)
Q Consensus 97 -~~~~~~yNs~~~i~~~G~il~~y 119 (198)
..+-..+-+.++||++|+++..+
T Consensus 99 ~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 99 RAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred HHhCCCcCCeEEEECCCCcEEEEE
Confidence 01112345779999999876443
No 174
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.37 E-value=1.8e+02 Score=23.12 Aligned_cols=42 Identities=5% Similarity=0.139 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il 116 (198)
...+.+.++.++.+.++++.......-...+..++++ +|+++
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~-~G~i~ 221 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMN-KGTVY 221 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEE-CCEEE
Confidence 3345566666555677766544332222367777784 78865
No 175
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.29 E-value=1.5e+02 Score=23.06 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=37.7
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.+++++.+.++++....... ..+.+..++++ +|+
T Consensus 150 al~~~p~llllDEP~~~-LD~~~-------------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~ 214 (239)
T cd03296 150 ALAVEPKVLLLDEPFGA-LDAKV-------------RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN-KGR 214 (239)
T ss_pred HHhcCCCEEEEcCCccc-CCHHH-------------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCe
Confidence 34456788888884432 11110 0244566777776667777665444332 34456777784 788
Q ss_pred eee
Q 029167 115 DLG 117 (198)
Q Consensus 115 il~ 117 (198)
+..
T Consensus 215 i~~ 217 (239)
T cd03296 215 IEQ 217 (239)
T ss_pred EEE
Confidence 653
No 176
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.07 E-value=1.3e+02 Score=24.27 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=37.1
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~i 115 (198)
|....++++++=|-+.. ..... .....+.|.+++++.+.++++.......-...+.++++. +|++
T Consensus 154 al~~~p~lllLDEPt~g-LD~~~-------------~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~-~G~i 218 (279)
T PRK13635 154 VLALQPDIIILDEATSM-LDPRG-------------RREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMN-KGEI 218 (279)
T ss_pred HHHcCCCEEEEeCCccc-CCHHH-------------HHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEE-CCEE
Confidence 44456778888775542 11100 124456677777766777776544332222367777774 7875
Q ss_pred e
Q 029167 116 L 116 (198)
Q Consensus 116 l 116 (198)
.
T Consensus 219 ~ 219 (279)
T PRK13635 219 L 219 (279)
T ss_pred E
Confidence 4
No 177
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.82 E-value=1.6e+02 Score=22.68 Aligned_cols=66 Identities=14% Similarity=0.264 Sum_probs=36.8
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.+.+++++.+.++++.....+. ..+.+..+++ .+|+
T Consensus 154 al~~~p~lllLDEP~~~-LD~~~-------------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~~G~ 218 (233)
T cd03258 154 ALANNPKVLLCDEATSA-LDPET-------------TQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM-EKGE 218 (233)
T ss_pred HHhcCCCEEEecCCCCc-CCHHH-------------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-ECCE
Confidence 33446777777774432 11100 0234456667666667777765554433 3455777788 4788
Q ss_pred ee
Q 029167 115 DL 116 (198)
Q Consensus 115 il 116 (198)
++
T Consensus 219 i~ 220 (233)
T cd03258 219 VV 220 (233)
T ss_pred EE
Confidence 65
No 178
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=33.69 E-value=1.7e+02 Score=20.49 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=43.6
Q ss_pred ccEEEEEeCCC--CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167 8 EVVVSALQFAC--TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (198)
Q Consensus 8 ~~~ia~~Q~~~--~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~ 85 (198)
..+|+.+...- ..+ .+...+++..+.+.+++.|++|+..++. ++++... +-+-+.||++...
T Consensus 5 ~~~v~~~~s~~~~i~~----~qdalDLi~~~~~~~~~~i~l~~~~l~~--------dFF~L~T----glAGeiLQKf~NY 68 (113)
T PF13788_consen 5 GIRVAEVSSDEPLISD----EQDALDLIGTAYEHGADRIILPKEALSE--------DFFDLRT----GLAGEILQKFVNY 68 (113)
T ss_pred CeEEEEEeCCCCeecc----hhHHHHHHHHHHHcCCCEEEEEhHHCCH--------HHHHhhc----chHHHHHHHHHhh
Confidence 46777776554 233 4556678888888999999999988863 4555443 4445666666643
Q ss_pred hCCEE
Q 029167 86 LGVVM 90 (198)
Q Consensus 86 ~~i~i 90 (198)
++.+
T Consensus 69 -~ikl 72 (113)
T PF13788_consen 69 -RIKL 72 (113)
T ss_pred -ceeE
Confidence 4443
No 179
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=33.48 E-value=46 Score=23.94 Aligned_cols=45 Identities=7% Similarity=0.014 Sum_probs=24.2
Q ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCc
Q 029167 8 EVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGY 53 (198)
Q Consensus 8 ~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g 53 (198)
...-++.+.++.- ...+-+++.++.++|.+.+..++.||+...+.
T Consensus 46 ~~h~gi~~~PipI-L~a~~~~L~~l~~~a~~~~i~~~~F~~~aq~~ 90 (133)
T PF09391_consen 46 NAHPGISHIPIPI-LKANSEQLRELRQKALEREITVVDFTDEAQST 90 (133)
T ss_dssp -EE---BSS-EEE-EEE-HHHHHHHHHHHHHTT---EEEEGGGGG-
T ss_pred CCCCCCCCcCeEE-EEcCHHHHHHHHHHHHHCCCeEEeChHHHhhC
Confidence 3445555555510 11256778888888888899999999987753
No 180
>PRK06740 histidinol-phosphatase; Validated
Probab=33.17 E-value=1.9e+02 Score=24.18 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCc-----cCcch----------hhhHH--HHhcCCCCCChHHHHHHHHHHHh---C
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGY-----YFCQA----------QREDF--FQRAKPYKDHPTILKMQELAKEL---G 87 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g-----~~~~~----------~~~~~--~~~a~~~~~~~~~~~l~~~a~~~---~ 87 (198)
.++.++++|.+.|-+-+.|-|.+... |+... ...++ ...... -..+.+.+.++-+++ +
T Consensus 62 ~~e~yv~~Ai~~G~~~ig~SdH~p~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~m~~~~--l~~Y~~ei~~LkekY~~~~ 139 (331)
T PRK06740 62 WIDLYLEEALRKGIKEVGIVDHLYRFYEAREYYEKYVDISDSRLGRLQKEWLDQVRVAS--LDDFTKAIEEAKERWSKRG 139 (331)
T ss_pred hHHHHHHHHHHCCCcEEEECCCCCccccccccchhhhccccccccccchhhhhhhhhhh--HHHHHHHHHHHHHHhccCC
Confidence 57889999999999999999998431 11100 00111 111111 135666777776665 5
Q ss_pred CEEEEeeee
Q 029167 88 VVMPVSFFE 96 (198)
Q Consensus 88 i~iv~g~~~ 96 (198)
|.|.+|.-.
T Consensus 140 I~Il~GlE~ 148 (331)
T PRK06740 140 VTLKLGIEA 148 (331)
T ss_pred CeEEEEEEe
Confidence 889888764
No 181
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=33.11 E-value=1.3e+02 Score=24.19 Aligned_cols=42 Identities=7% Similarity=0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 29 AERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 29 i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+.+.+++|++.|+|=|++|-+.. +....+.+.++++|+..+.
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~----------------------ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPY----------------------EESDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCH----------------------HHHHHHHHHHHHcCCCEEE
Confidence 34455555555666666665432 3346677888888887765
No 182
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=33.00 E-value=1.2e+02 Score=22.55 Aligned_cols=45 Identities=18% Similarity=0.054 Sum_probs=29.0
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
+.++.++|-.+++|||..-+.. ..+..-...+|++.++.|+--..
T Consensus 90 ~~~~lk~g~~v~ifpeG~r~~~------------------~~~~~G~~~lA~~~~~pIvPv~i 134 (189)
T cd07983 90 MLRALKDGYNIAITPDGPRGPR------------------YKVKPGVILLARKSGAPIVPVAI 134 (189)
T ss_pred HHHHHhCCCEEEEcCCCCCCcc------------------eecchHHHHHHHHhCCCEEEEEE
Confidence 3334456889999999753210 12334577888899999985444
No 183
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=32.57 E-value=1.3e+02 Score=22.94 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=35.7
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~i 115 (198)
|...+++++++=|-+.. ..... .....+.|.++.++.+..+++-.....--.+.+.+++++ +|++
T Consensus 155 al~~~p~illlDEP~~~-LD~~~-------------~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAA-LDSKS-------------GRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHME-DGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCc-CCHHH-------------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEE-CCEE
Confidence 44456778888775542 11100 024456677776655677766544332224567777774 5654
No 184
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=32.46 E-value=1.8e+02 Score=22.56 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.++.++.+..+++....... ..+.+..++++ +|+++
T Consensus 183 ~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~-~G~i~ 225 (243)
T TIGR02315 183 QVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK-AGEIV 225 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCEEE
Confidence 44466667666657777665544332 34567777884 78764
No 185
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.42 E-value=1.5e+02 Score=23.72 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=37.7
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~i 115 (198)
|...+++++++=|-+.. ..... .....+.+.+++++.+.++++-......-..-+.++++. +|++
T Consensus 154 aL~~~p~llllDEPt~~-LD~~~-------------~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~-~G~i 218 (277)
T PRK13642 154 IIALRPEIIILDESTSM-LDPTG-------------RQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMK-AGEI 218 (277)
T ss_pred HHHcCCCEEEEeCCccc-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEE-CCEE
Confidence 34446778888774332 11110 134556677777766788777544433222356778884 7876
Q ss_pred ee
Q 029167 116 LG 117 (198)
Q Consensus 116 l~ 117 (198)
+.
T Consensus 219 ~~ 220 (277)
T PRK13642 219 IK 220 (277)
T ss_pred EE
Confidence 53
No 186
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=32.41 E-value=1.4e+02 Score=22.98 Aligned_cols=40 Identities=5% Similarity=0.097 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCC
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G 113 (198)
...+.|.++.++.+..+++.....+.-...+..+++++++
T Consensus 175 ~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~ 214 (225)
T PRK10247 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHA 214 (225)
T ss_pred HHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEeccc
Confidence 3445566666666777766544332212367777775443
No 187
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.40 E-value=1.9e+02 Score=23.62 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.|.+...++|+-|++.|-+-+++=|.+-.... . ...++... . ...-+.+|.+.|++.||-|.+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~-~-~~~d~~~~---~-~~~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEK-D-DDFDFTKP---I-PDFDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---T-TT--TT-B-----TT--HHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccc-c-cccccccc---C-CccCHHHHHHHHHHcCCCEEE
Confidence 47889999999999999999999777753110 0 01111111 1 145678899999999977765
No 188
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.10 E-value=2.2e+02 Score=22.65 Aligned_cols=66 Identities=11% Similarity=0.059 Sum_probs=35.5
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~i 115 (198)
|...+++++++=|-+.. ..... .....+.|.+++++.+.++++.......-...+..+++ .+|++
T Consensus 156 al~~~p~lllLDEP~~g-LD~~~-------------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l-~~G~i 220 (271)
T PRK13632 156 VLALNPEIIIFDESTSM-LDPKG-------------KREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVF-SEGKL 220 (271)
T ss_pred HHHcCCCEEEEeCCccc-CCHHH-------------HHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEE-ECCEE
Confidence 34456778888775432 11100 02445666776665556666544433222245677777 47876
Q ss_pred e
Q 029167 116 L 116 (198)
Q Consensus 116 l 116 (198)
.
T Consensus 221 ~ 221 (271)
T PRK13632 221 I 221 (271)
T ss_pred E
Confidence 4
No 189
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.07 E-value=1.7e+02 Score=23.49 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=37.9
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|....++++++=|-+.. ..... .....+.++++.++.+.++++....... ....+.++++ .+|+
T Consensus 151 aL~~~p~llilDEPt~g-LD~~~-------------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l-~~G~ 215 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAG-LDPQG-------------VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM-DKGR 215 (277)
T ss_pred HHHcCCCEEEEeCCccc-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-ECCe
Confidence 44446777777775432 11100 0244566777777667877776554433 2455777788 4788
Q ss_pred ee
Q 029167 115 DL 116 (198)
Q Consensus 115 il 116 (198)
++
T Consensus 216 i~ 217 (277)
T PRK13652 216 IV 217 (277)
T ss_pred EE
Confidence 65
No 190
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=32.04 E-value=1.5e+02 Score=22.36 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++-...... ..+.+..+++ .+|+++
T Consensus 168 ~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l-~~g~~~ 210 (213)
T cd03301 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM-NDGQIQ 210 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE-ECCEEE
Confidence 44566777776667777765544322 2345666777 467653
No 191
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=31.92 E-value=1.4e+02 Score=25.20 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=42.1
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcC
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~ 111 (198)
+.+|...+++++++=|-+.. .... . .....+.|+++.++.++++++-+..... ..+.+..++++
T Consensus 147 lArAL~~~P~llLLDEP~s~-LD~~-----~--------r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~- 211 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGA-LDAQ-----V--------RKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS- 211 (353)
T ss_pred HHHHHhcCCCEEEEeCCCcc-CCHH-----H--------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-
Confidence 33445567888888885432 1110 0 0345577888887778888765554433 34557777884
Q ss_pred CCCeee
Q 029167 112 DGSDLG 117 (198)
Q Consensus 112 ~G~il~ 117 (198)
+|+++.
T Consensus 212 ~G~i~~ 217 (353)
T PRK10851 212 QGNIEQ 217 (353)
T ss_pred CCEEEE
Confidence 787653
No 192
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=31.88 E-value=44 Score=24.53 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=39.3
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g 93 (198)
..+.+-++++-|-+++.+....+-+++|...+.+....+.++.+.+..++.+..+-.|
T Consensus 66 v~d~~geiL~VsQFTL~a~~~KG~rP~F~~a~~~~~A~~ly~~f~~~l~~~~~~V~~G 123 (147)
T PRK05273 66 VQDVGGEILVVSQFTLYADTRKGRRPSFSAAAPPEEAEPLYDYFVEALRAQGVPVETG 123 (147)
T ss_pred HHHCCCCEEEEEcccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHcCCceeec
Confidence 3445789999999999876555667788776665444566677777777665444333
No 193
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=31.65 E-value=1.5e+02 Score=23.49 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=39.4
Q ss_pred HHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCC
Q 029167 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (198)
Q Consensus 35 ~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G 113 (198)
.|...+++++++=|-+.. ..... .....+.|.+++++.+..+++....... ..+.+.++++ .+|
T Consensus 156 ral~~~p~llllDEPt~g-LD~~~-------------~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l-~~G 220 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTW-LDISH-------------QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL-REG 220 (265)
T ss_pred HHHhcCCCEEEEeCcccc-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECC
Confidence 344557888888775432 21110 0244566777766667777765544332 3456677788 478
Q ss_pred Ceee
Q 029167 114 SDLG 117 (198)
Q Consensus 114 ~il~ 117 (198)
++..
T Consensus 221 ~i~~ 224 (265)
T PRK10253 221 KIVA 224 (265)
T ss_pred EEEE
Confidence 7653
No 194
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=31.63 E-value=1.4e+02 Score=24.94 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.++.++.+.++++....... ..+.+..++++ +|+
T Consensus 154 aL~~~p~iLlLDEPts~-LD~~~-------------~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~-~G~ 218 (343)
T PRK11153 154 ALASNPKVLLCDEATSA-LDPAT-------------TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID-AGR 218 (343)
T ss_pred HHHcCCCEEEEeCCccc-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 34456778888775432 11100 0245566777777767888776554432 34567777784 787
Q ss_pred eee
Q 029167 115 DLG 117 (198)
Q Consensus 115 il~ 117 (198)
++.
T Consensus 219 i~~ 221 (343)
T PRK11153 219 LVE 221 (343)
T ss_pred EEE
Confidence 653
No 195
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=31.56 E-value=2.1e+02 Score=23.23 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCcc
Q 029167 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYY 54 (198)
Q Consensus 20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~ 54 (198)
.+.++.++++.+.++.|++.|..+.+-.|.+.++|
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~ 142 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM 142 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC
Confidence 46788899999999999999999999999855455
No 196
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=31.24 E-value=1.5e+02 Score=24.07 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEE-eCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh-CCEEEE
Q 029167 24 TNLATAERLVRAAHGKGANIIL-IQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPV 92 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv-~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~-~i~iv~ 92 (198)
.+.+...++.+.|.+.|+|-|+ .|-++... . .....+.+.++++.. ++.+++
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~---~--------------~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYKF---S--------------FEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC---C--------------HHHHHHHHHHHHHhcCCCCEEE
Confidence 4566778888888899999876 45443321 1 135667788888777 677765
No 197
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=31.13 E-value=85 Score=26.47 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
.+.+-++..++.|.++|-+.|++-.-..+. +..=+...++.+.+.++++|+.++++.+
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~lEP~----------eG~ydF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSWLEPE----------EGQYDFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHHH-SB----------TTB---HHHHHHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhccCC----------CCeeecHHHHHHHHHHHhccCeEEEEec
Confidence 445555555566999999888654322221 1111246688899999999999998876
No 198
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=31.02 E-value=2.2e+02 Score=21.61 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.++.++.+.++++-...... ..+.+..+++. +|++.
T Consensus 166 ~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~-~g~i~ 208 (213)
T TIGR01277 166 EMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVS-QGKIK 208 (213)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE-CCeEE
Confidence 44566777776667777665443322 23456667774 68764
No 199
>PRK09989 hypothetical protein; Provisional
Probab=30.98 E-value=2.6e+02 Score=21.92 Aligned_cols=62 Identities=8% Similarity=-0.075 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEE-eCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 22 VSTNLATAERLVRAAHGKGANIIL-IQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv-~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.+...+.+.+.++.|.+-|+..|+ +|-....+.. ..+..+.. .+.++.+.+.++++++.+.+
T Consensus 80 ~~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~----~~~~~~~~-----~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 80 EHEARADIDLALEYALALNCEQVHVMAGVVPAGED----AERYRAVF-----IDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCcCEEEECccCCCCCCC----HHHHHHHH-----HHHHHHHHHHHHhcCCEEEE
Confidence 344567788888888888988664 4432211111 11111111 25567788888999999876
No 200
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=30.80 E-value=1.4e+02 Score=19.87 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 119 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y 119 (198)
+-++.+.+.+++.|+.+.-+ +.........+.++.||+|..+..+
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWV-EAGEEPGQGRALRVEDPLGFPIEFY 116 (121)
T ss_pred HHHHHHHHHHHHcCCCcccc-cCCcCCCCccEEEEECCCCCEEEEE
Confidence 55666777777778776533 2222222235789999999876544
No 201
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=30.77 E-value=1.1e+02 Score=23.26 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeee
Q 029167 78 KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118 (198)
Q Consensus 78 ~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~ 118 (198)
.=+++++.+++.. ...+..|.+.++||++|.+...
T Consensus 108 ~~~~ia~~ygv~~------~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 108 KTKSIARSYGVLE------EEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred cHhHHHHHcCCcc------cCCCceEEEEEEECCCCEEEEE
Confidence 4466777777632 2234467899999999987653
No 202
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=30.60 E-value=2e+02 Score=24.98 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=41.5
Q ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHH------hCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHH
Q 029167 7 REVVVSALQFACTDDVSTNLATAERLVRAAH------GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQ 80 (198)
Q Consensus 7 ~~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~------~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~ 80 (198)
.-+|+.+..+....|..+ .+.+...+.++. .+.||+||.-- +++. +.|+ .+..+.+.
T Consensus 6 ~~~~~~i~t~GC~~N~~d-se~~~~~l~~~G~~~~~~~~~aD~ivinT---C~v~---------~~a~----~k~~~~i~ 68 (440)
T PRK14862 6 AAPKIGFVSLGCPKALVD-SERILTQLRAEGYEISPSYDGADLVIVNT---CGFI---------DSAV----QESLEAIG 68 (440)
T ss_pred CCCEEEEEEcCCCCcHHH-HHHHHHHHHHCcCEECCCcccCCEEEEec---cccc---------chHH----HHHHHHHH
Confidence 335899998888655443 233444444331 24688888862 1121 1222 46667777
Q ss_pred HHHHHhCCEEEEeeee
Q 029167 81 ELAKELGVVMPVSFFE 96 (198)
Q Consensus 81 ~~a~~~~i~iv~g~~~ 96 (198)
++.++.+..++.|...
T Consensus 69 ~~~~~~~~ivv~GC~a 84 (440)
T PRK14862 69 EALAENGKVIVTGCLG 84 (440)
T ss_pred HHHhcCCCEEEECCcc
Confidence 7776666666667553
No 203
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.58 E-value=1.3e+02 Score=23.96 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cCCeeEEEE
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSI 106 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~~~~yNs~ 106 (198)
+.+-.|.+|...++++++|=|-...-. +++- ++.++-+.++|++ |+++++=+.+- .....-+.+
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALD------PElv--------~EVL~vm~~LA~e-GmTMivVTHEM~FAr~Vadrv 206 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALD------PELV--------GEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRV 206 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCC------HHHH--------HHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheE
Confidence 334466777888999999999654321 1111 4667778888877 67776654442 234566777
Q ss_pred EEEcCCCCeeeeeeecc
Q 029167 107 AIIDADGSDLGLYRKSH 123 (198)
Q Consensus 107 ~~i~~~G~il~~y~K~~ 123 (198)
++++ +|.++.......
T Consensus 207 iFmd-~G~iie~g~p~~ 222 (240)
T COG1126 207 IFMD-QGKIIEEGPPEE 222 (240)
T ss_pred EEee-CCEEEEecCHHH
Confidence 8885 787776664433
No 204
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=30.46 E-value=2.4e+02 Score=24.91 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeee
Q 029167 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118 (198)
Q Consensus 76 ~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~ 118 (198)
....+..|.+++++++-... . =.+.++||+|+++..
T Consensus 419 ~~~~~~RAiEng~~vvra~n---~----G~Saiidp~G~i~~~ 454 (505)
T PRK00302 419 FQMARMRALELGRPLIRATN---T----GITAVIDPLGRIIAQ 454 (505)
T ss_pred HHHHHHHHHHhCCceEEecC---c----eeeEEECCCCCEeee
Confidence 34455668899999986531 1 236889999998644
No 205
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=30.41 E-value=67 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCc
Q 029167 27 ATAERLVRAAHGKGANIILIQELFEGY 53 (198)
Q Consensus 27 ~~i~~~i~~A~~~g~dlvv~PE~~~~g 53 (198)
+.+.+.++.+.+.|-.+++|||..-+.
T Consensus 125 ~~~~~~~~~~~~~g~~l~iFPEGtr~~ 151 (255)
T COG0204 125 ETLRAAVARLKAGGRSLVIFPEGTRSR 151 (255)
T ss_pred HHHHHHHHHHHhCCcEEEECCCcCcCC
Confidence 556677777777789999999988763
No 206
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=30.07 E-value=1.4e+02 Score=23.70 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++....... ..+.+.+++++ +|++.
T Consensus 187 ~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~-~G~i~ 229 (267)
T PRK15112 187 QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH-QGEVV 229 (267)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEEE
Confidence 44456777766667777665444332 34567778884 78765
No 207
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=29.95 E-value=1.9e+02 Score=22.84 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+..+++....... ..+.+..+++. +|++.
T Consensus 190 ~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~-~g~i~ 232 (262)
T PRK09984 190 IVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR-QGHVF 232 (262)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 44466677766657777765544432 34456677774 67764
No 208
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=29.81 E-value=1.7e+02 Score=23.03 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.+++++++++.++++....... ..+.+..+++. +|+++
T Consensus 189 ~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~-~g~i~ 231 (258)
T PRK11701 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK-QGRVV 231 (258)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEEE
Confidence 33455666666667777765554432 34567778884 78864
No 209
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=29.68 E-value=1.2e+02 Score=22.73 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=30.6
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEeCCCCCCccC
Q 029167 10 VVSALQFACTDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYF 55 (198)
Q Consensus 10 ~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~--g~dlvv~PE~~~~g~~ 55 (198)
||+++|++.+++.+. ..++-..|-+|+.. =.+|++.|--...+|.
T Consensus 1 Kv~ivQ~pYlGd~~a-~r~mGerIGRaaQ~FEV~eLiiap~~~vda~e 47 (173)
T PF14419_consen 1 KVVIVQMPYLGDLKA-CRKMGERIGRAAQAFEVKELIIAPKEKVDAYE 47 (173)
T ss_pred CeeEEeccccCCHHH-HHHHHHHHhHHHhhcchheEEEeccCccCHHH
Confidence 689999999888765 44555555555432 2579999876665543
No 210
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=29.63 E-value=2.5e+02 Score=21.95 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcch-hhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEee
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQA-QREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~ 94 (198)
+.+++.+.+.++-|.+.|++.|+.......+..... ....+.. ..+.+..+.++|+++++.+.+-.
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~------~~~~l~~l~~~a~~~~i~l~~e~ 146 (274)
T COG1082 80 EEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARER------WAEALEELAEIAEELGIGLALEN 146 (274)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHH------HHHHHHHHHHHHHHhCCceEEee
Confidence 456778888888888899998887776554432110 0000100 13567788888888877776654
No 211
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=29.49 E-value=1.3e+02 Score=24.06 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEE-eCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE-eee
Q 029167 25 NLATAERLVRAAHGKGANIIL-IQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFF 95 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g~dlvv-~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~-g~~ 95 (198)
+.+...++.+.|.+.|+|-|+ .|-.... .. .....+.+.+++...++++++ -.|
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP~y~~---~~--------------~~~~~~~~~~ia~~~~~pi~iYn~P 132 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPPYYNK---PS--------------QEGIVAHFKAVADASDLPVILYNIP 132 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCcCCC---CC--------------HHHHHHHHHHHHhcCCCCEEEEECc
Confidence 355677778888888988544 4433221 11 135667788888777777765 444
No 212
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.45 E-value=1.7e+02 Score=23.52 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.+++++++.+.++++....... ..+.+.++++ .+|+
T Consensus 155 aL~~~p~lLilDEPt~g-LD~~~-------------~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l-~~G~ 219 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAG-LDPMG-------------VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM-KEGR 219 (283)
T ss_pred HHHcCCCEEEEeCCccC-CCHHH-------------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE-ECCE
Confidence 34446777777775542 11100 0244466777777667887776554332 2355677788 4787
Q ss_pred ee
Q 029167 115 DL 116 (198)
Q Consensus 115 il 116 (198)
++
T Consensus 220 i~ 221 (283)
T PRK13636 220 VI 221 (283)
T ss_pred EE
Confidence 64
No 213
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=29.45 E-value=2.6e+02 Score=23.03 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (198)
Q Consensus 30 ~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~ 86 (198)
.++++...+.|+|.|..++.+-+ +.. ++.|.++.. +..+++.+..++.
T Consensus 180 ~~~~~~~ieaGad~i~i~d~~~~-~ls---p~~f~ef~~-----P~~k~i~~~i~~~ 227 (335)
T cd00717 180 IEYLKAQIEAGAQAVQIFDSWAG-ALS---PEDFEEFVL-----PYLKRIIEEVKKR 227 (335)
T ss_pred HHHHHHHHHhCCCEEEEeCcccc-cCC---HHHHHHHHH-----HHHHHHHHHHHHh
Confidence 33444445679999988886432 221 334555553 5566666666665
No 214
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=29.37 E-value=93 Score=24.57 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=41.1
Q ss_pred HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCC
Q 029167 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDAD 112 (198)
Q Consensus 34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~ 112 (198)
.+|.-.+++++||-|-+.. .... ....+..+....+..|-.+++++....+ ..+.....++ ++
T Consensus 145 ARAlvh~P~i~vlDEP~sG-LDi~--------------~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivl-h~ 208 (245)
T COG4555 145 ARALVHDPSILVLDEPTSG-LDIR--------------TRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL-HK 208 (245)
T ss_pred HHHHhcCCCeEEEcCCCCC-ccHH--------------HHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEE-ec
Confidence 3455568999999996643 2210 0222233333345557777777654433 4567777888 78
Q ss_pred CCeeee
Q 029167 113 GSDLGL 118 (198)
Q Consensus 113 G~il~~ 118 (198)
|+++..
T Consensus 209 Gevv~~ 214 (245)
T COG4555 209 GEVVLE 214 (245)
T ss_pred CcEEEc
Confidence 987654
No 215
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=29.10 E-value=1.8e+02 Score=24.39 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.++.++.+.++++....... ..+.+..+++ .+|+++.
T Consensus 169 ~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l-~~G~i~~ 212 (354)
T TIGR02142 169 EILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVL-EDGRVAA 212 (354)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-eCCEEEE
Confidence 44567777777767777765554332 2345667777 4787654
No 216
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=29.02 E-value=1.5e+02 Score=25.28 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=39.6
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.++.++.+.++++-....+. .++.+.++++ .+|+
T Consensus 178 ALa~~P~ILLlDEPts~-LD~~~-------------r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl-~~G~ 242 (382)
T TIGR03415 178 AFAMDADILLMDEPFSA-LDPLI-------------RTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM-EGGR 242 (382)
T ss_pred HHhcCCCEEEEECCCcc-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCE
Confidence 44456788888775542 11110 1355567777777767887776554433 3555677777 4787
Q ss_pred eee
Q 029167 115 DLG 117 (198)
Q Consensus 115 il~ 117 (198)
++.
T Consensus 243 iv~ 245 (382)
T TIGR03415 243 IIQ 245 (382)
T ss_pred EEE
Confidence 653
No 217
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=28.98 E-value=2e+02 Score=22.53 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|++++++.+..+++-...... ..+.+..++++ +|++.
T Consensus 184 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~ 226 (252)
T TIGR03005 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD-KGRIV 226 (252)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEEE
Confidence 44466777776667777765544332 24557777884 78864
No 218
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=28.95 E-value=1.8e+02 Score=22.43 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.+++++.+.++++....... ..+.+.++++ .+|++..
T Consensus 163 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~~ 206 (230)
T TIGR02770 163 RVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVM-DDGRIVE 206 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEE
Confidence 44566777776667776665443322 3456777888 4788653
No 219
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=28.94 E-value=3e+02 Score=23.69 Aligned_cols=125 Identities=12% Similarity=0.129 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 9 ~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
|||| ||....+.++...+++ ..+++....++||++.-- .|.....-.|+...+. .+-+++++.+-+.|.=
T Consensus 1 MrIa-VqGCcHG~Ld~iYkti-~~~ek~~~tkVDLLlccG----DFQavRn~~D~~siav----PpKy~~m~~F~~YYsg 70 (456)
T KOG2863|consen 1 MRIA-VQGCCHGELDNIYKTI-SLIEKRGNTKVDLLLCCG----DFQAVRNEQDLKSIAV----PPKYRRMGDFYKYYSG 70 (456)
T ss_pred Ccee-eecccchhHHHHHHHH-HHHHHcCCCCccEEEEcc----chHhhcchhhcccccC----CHHHHHHHHHHHHhCC
Confidence 4665 4666655554433333 344444445899987422 1211111234555554 4667778887777643
Q ss_pred EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeee
Q 029167 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICF 158 (198)
Q Consensus 89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 158 (198)
-+.+..+ ..+|+.+-+ .-+-...-|+++|.....|.-|-. .|+..+|.|||-+-+
T Consensus 71 e~~APVl----------TIFIGGNHE---AsnyL~eLpyGGwVApNIyYlG~a--gVv~~~gvRIggiSG 125 (456)
T KOG2863|consen 71 EIKAPVL----------TIFIGGNHE---ASNYLQELPYGGWVAPNIYYLGYA--GVVNFGGVRIGGISG 125 (456)
T ss_pred cccCcee----------EEEecCchH---HHHHHHhcccCceeccceEEeeec--ceEEECCEEEeeccc
Confidence 3322222 122321211 011112234555555555555554 577777778776543
No 220
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.78 E-value=1.6e+02 Score=23.67 Aligned_cols=43 Identities=7% Similarity=0.153 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.+.++.++.+.++++-....+. ..+.+..++++ +|+++.
T Consensus 183 ~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~-~G~i~~ 226 (286)
T PRK13646 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK-EGSIVS 226 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEE
Confidence 34455666666667888776554433 23457778884 788753
No 221
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.72 E-value=1.7e+02 Score=23.59 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++....... ..+.+.++++. +|++.
T Consensus 182 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~-~G~i~ 224 (287)
T PRK13637 182 EILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMN-KGKCE 224 (287)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 44456677766667887776555433 34567778884 78865
No 222
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=28.70 E-value=1.6e+02 Score=18.61 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCC-CCccCc-c--hhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 27 ATAERLVRAAHGKGANIILIQELF-EGYYFC-Q--AQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 27 ~~i~~~i~~A~~~g~dlvv~PE~~-~~g~~~-~--~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
....++++.+.+ +.+.|++..+. +.+-.. . .....+...+ .+...+.|...|+++|+.++.
T Consensus 11 k~a~~iv~~~~~-~~~~Ivie~L~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~yka~~~Gi~v~~ 75 (82)
T TIGR01766 11 KIVKQIVEYAKE-NNGTIVLEDLKNIKEMVDKKSKYLRRKLHQWS----FRKLISKIKYKAEEYGIEVIE 75 (82)
T ss_pred HHHHHHHHHHHH-cCCEEEECCccchhhhcchhhHHHHHHHHhhh----HHHHHHHHHHHHHHcCCeEEE
Confidence 344556667777 66899998876 322111 0 1122222222 367788899999999999875
No 223
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=28.69 E-value=81 Score=22.53 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeC
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQ 47 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~P 47 (198)
+......+.+..++..+.|+.+|-..
T Consensus 46 C~~~~~~l~~~~~~~~~~~v~vi~Is 71 (154)
T PRK09437 46 CTVQACGLRDNMDELKKAGVVVLGIS 71 (154)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 45556667777777767788877764
No 224
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=28.66 E-value=2e+02 Score=22.85 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.+++++.+.++++....... ..+.+..+++ .+|+
T Consensus 157 al~~~p~lllLDEPt~~-LD~~~-------------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l-~~G~ 221 (269)
T PRK11831 157 AIALEPDLIMFDEPFVG-QDPIT-------------MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIV-ADKK 221 (269)
T ss_pred HHhcCCCEEEEcCCCcc-CCHHH-------------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEE-ECCE
Confidence 33446778888775432 11100 0244466777766657777665544322 3445667777 4787
Q ss_pred eee
Q 029167 115 DLG 117 (198)
Q Consensus 115 il~ 117 (198)
++.
T Consensus 222 i~~ 224 (269)
T PRK11831 222 IVA 224 (269)
T ss_pred EEE
Confidence 653
No 225
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.62 E-value=2.1e+02 Score=22.15 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|++++++.+..+++-...... ..+.+.++++. +|+++.
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~-~G~i~~ 216 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK-NGEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEE
Confidence 44456677666556776665444332 34556777884 788653
No 226
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=28.58 E-value=2.3e+02 Score=20.55 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=41.3
Q ss_pred cEEEEEeCCC---C--CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167 9 VVVSALQFAC---T--DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (198)
Q Consensus 9 ~~ia~~Q~~~---~--~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a 83 (198)
-.+.+++... . .+.++-.+.+.++++.+.+.++.+|+..-........ .+....... ....+-+.++++|
T Consensus 60 ~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~---~~~~~~~~~--~~~~~n~~~~~~a 134 (183)
T cd04501 60 PAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPW---KPQWLRPAN--KLKSLNRWLKDYA 134 (183)
T ss_pred CCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCcccc---chhhcchHH--HHHHHHHHHHHHH
Confidence 3456666655 1 2455666667777777777788877763211111110 000000000 0134556788899
Q ss_pred HHhCCEEE
Q 029167 84 KELGVVMP 91 (198)
Q Consensus 84 ~~~~i~iv 91 (198)
++.++.++
T Consensus 135 ~~~~v~~v 142 (183)
T cd04501 135 RENGLLFL 142 (183)
T ss_pred HHcCCCEE
Confidence 88887766
No 227
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=28.54 E-value=3.6e+02 Score=23.53 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEe-CCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe
Q 029167 26 LATAERLVRAAHGKGANIILI-QELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~-PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g 93 (198)
.+.+.+.++++.+.|+.-+++ .+. |...+ . ......+++.+.++++++.++.+
T Consensus 74 ~~~~~~~l~e~~~~gv~~~vi~s~g----f~e~g--------~---~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 74 AKYVPQVVEECGEKGVKGAVVITAG----FKEVG--------E---EGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCC----ccccC--------c---chHHHHHHHHHHHHHcCCEEEec
Confidence 456677888888888776653 332 22110 0 00233478999999999999874
No 228
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=28.16 E-value=2.1e+02 Score=21.99 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.+++++.+.++++....... ..+-+..++++ +|+
T Consensus 143 al~~~p~lllLDEP~~g-LD~~~-------------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~ 207 (232)
T PRK10771 143 CLVREQPILLLDEPFSA-LDPAL-------------RQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVA-DGR 207 (232)
T ss_pred HHhcCCCEEEEeCCccc-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCE
Confidence 44457888888775432 11110 0244566777777667777765544432 33446677774 787
Q ss_pred ee
Q 029167 115 DL 116 (198)
Q Consensus 115 il 116 (198)
+.
T Consensus 208 i~ 209 (232)
T PRK10771 208 IA 209 (232)
T ss_pred EE
Confidence 64
No 229
>PLN02833 glycerol acyltransferase family protein
Probab=28.06 E-value=96 Score=26.51 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHh--CCCcEEEeCCCCCC
Q 029167 27 ATAERLVRAAHG--KGANIILIQELFEG 52 (198)
Q Consensus 27 ~~i~~~i~~A~~--~g~dlvv~PE~~~~ 52 (198)
..+.+.+.+..+ +|-.+++|||..-+
T Consensus 222 ~~~~~~l~~~l~~~~G~~llIFPEGTrs 249 (376)
T PLN02833 222 EVVAKKLRDHVQDPDRNPLLIFPEGTCV 249 (376)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCcccc
Confidence 334444444333 58899999998765
No 230
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=28.01 E-value=3.1e+02 Score=21.75 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=41.3
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee-eccCCeeEEEEEEEcC
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANNAHYNSIAIIDA 111 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~-~~~~~~~yNs~~~i~~ 111 (198)
+.+|...++.++++-|-|-.-.+. + =.-++.+....++.|+-+++.-. .++--.+.+.++++ .
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPi----------a-----V~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi-~ 213 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPI----------A-----VIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYII-S 213 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCch----------h-----HHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEE-e
Confidence 334556688999999955431111 1 01223444445666888876522 22334678889999 5
Q ss_pred CCCeeee
Q 029167 112 DGSDLGL 118 (198)
Q Consensus 112 ~G~il~~ 118 (198)
+|+++..
T Consensus 214 ~G~vla~ 220 (243)
T COG1137 214 DGKVLAE 220 (243)
T ss_pred cCeEEec
Confidence 8998754
No 231
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=27.97 E-value=1.8e+02 Score=22.63 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++....... ..+.+..+++. +|++.
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i~ 233 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID-KGRLL 233 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe-CCEEE
Confidence 34455666666556777765544332 34455666673 67653
No 232
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=27.83 E-value=2e+02 Score=22.97 Aligned_cols=25 Identities=4% Similarity=-0.009 Sum_probs=16.3
Q ss_pred EeeeecccCCcccccc--CCCCccccc
Q 029167 155 LICFFDLIFDDDFPSR--LDFPLPFLN 179 (198)
Q Consensus 155 ~~IC~d~~~pe~~r~~--~~~~~~~~~ 179 (198)
+.+.+-+..||-++.. .|||.+++-
T Consensus 201 i~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 201 VLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3345666678877775 668877653
No 233
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.82 E-value=2.2e+02 Score=22.05 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.+++++.+.+.++++....... ..+....++++ +|+++.
T Consensus 167 ~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~-~G~i~~ 210 (235)
T cd03299 167 KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML-NGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEE
Confidence 34456666666667887776554432 23445667774 687653
No 234
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=27.81 E-value=2.1e+02 Score=22.16 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.++.++.+.++++.+..... ....+..++++ +|++.
T Consensus 168 ~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~-~g~i~ 210 (237)
T TIGR00968 168 ELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS-NGKIE 210 (237)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE-CCEEE
Confidence 44466666666557777766554433 34556677774 78764
No 235
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=27.79 E-value=1.8e+02 Score=22.39 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
.+++|.+.|++++|-|= ....+.+.++++++..+-|...
T Consensus 72 ~a~~a~~aGA~FivSP~--------------------------~~~~v~~~~~~~~i~~iPG~~T 110 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSPG--------------------------FDPEVIEYAREYGIPYIPGVMT 110 (196)
T ss_dssp HHHHHHHHT-SEEEESS----------------------------HHHHHHHHHHTSEEEEEESS
T ss_pred HHHHHHHcCCCEEECCC--------------------------CCHHHHHHHHHcCCcccCCcCC
Confidence 45567777888888773 1155888899999999998664
No 236
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=27.76 E-value=1.8e+02 Score=24.06 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. .... . .....+.|.++.++.+.++++-...... ..+.+.+++++ +|+
T Consensus 114 aL~~~p~lllLDEP~s~-LD~~-----~--------~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~-~G~ 178 (325)
T TIGR01187 114 ALVFKPKILLLDEPLSA-LDKK-----L--------RDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMR-KGK 178 (325)
T ss_pred HHHhCCCEEEEeCCCcc-CCHH-----H--------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 34446788888774432 1100 0 0244566777777778877765554332 34456677774 787
Q ss_pred eee
Q 029167 115 DLG 117 (198)
Q Consensus 115 il~ 117 (198)
+..
T Consensus 179 i~~ 181 (325)
T TIGR01187 179 IAQ 181 (325)
T ss_pred EEE
Confidence 654
No 237
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.70 E-value=2.4e+02 Score=21.94 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.++.++.+.++++-...... ..+.+..+++. +|++.
T Consensus 169 ~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~-~G~i~ 211 (241)
T PRK14250 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN-KGILV 211 (241)
T ss_pred HHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe-CCEEE
Confidence 34456666666557777765544332 34557778884 78764
No 238
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.60 E-value=2e+02 Score=20.61 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
.+.+++++|.+.|.+.|.+-+.... .......+.+++.++.++.|.-.
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~~~---------------------~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHNNF---------------------AGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEETTT---------------------TTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEcCCccc---------------------ccchHHHHHHHhcCCceEEeEee
Confidence 5677889999999999998887211 11244555567799999999876
No 239
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=27.50 E-value=2.1e+02 Score=22.29 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.+.+++++.+..+++....... ..+.+..++++ +|+++.
T Consensus 186 ~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~-~G~i~~ 229 (253)
T TIGR02323 186 RLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ-QGRVVE 229 (253)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEEE
Confidence 34456666666667777765544322 23446667774 687653
No 240
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=27.33 E-value=2e+02 Score=22.41 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=37.7
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.++.++.+..+++....... ..+.+..+++ .+|+
T Consensus 167 al~~~p~llllDEPt~~-LD~~~-------------~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l-~~g~ 231 (255)
T PRK11300 167 CMVTQPEILMLDEPAAG-LNPKE-------------TKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV-NQGT 231 (255)
T ss_pred HHhcCCCEEEEcCCccC-CCHHH-------------HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCe
Confidence 44457888888885543 11110 0234456666666657777766554433 2445677778 4788
Q ss_pred ee
Q 029167 115 DL 116 (198)
Q Consensus 115 il 116 (198)
+.
T Consensus 232 i~ 233 (255)
T PRK11300 232 PL 233 (255)
T ss_pred EE
Confidence 65
No 241
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=27.22 E-value=2.5e+02 Score=20.38 Aligned_cols=65 Identities=20% Similarity=0.125 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 21 ~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+.++-.+.+.++++++...+++++++.-....+.. .......+.. ...-+.++++|+++++.++=
T Consensus 86 ~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~~--~~~~~~~~~~-----~~~n~~l~~~a~~~~v~~vd 150 (185)
T cd01832 86 DPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVLE--PFRRRVRARL-----AAYNAVIRAVAARYGAVHVD 150 (185)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEecCCCccccc--hhHHHHHHHH-----HHHHHHHHHHHHHcCCEEEe
Confidence 34555666677777776778888887532220111 1011111111 24557889999998877663
No 242
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=27.10 E-value=2.3e+02 Score=20.81 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=38.4
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcC
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~ 111 (198)
+..|...+++++++=|-+.. ..... .....+.+.++.++.+.++++-...... ....+..+++.
T Consensus 108 laral~~~p~llllDEP~~~-LD~~~-------------~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~- 172 (180)
T cd03214 108 LARALAQEPPILLLDEPTSH-LDIAH-------------QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLK- 172 (180)
T ss_pred HHHHHhcCCCEEEEeCCccC-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-
Confidence 44455668999999996543 11110 0234455666655546666664443322 24556777774
Q ss_pred CCCee
Q 029167 112 DGSDL 116 (198)
Q Consensus 112 ~G~il 116 (198)
+|++.
T Consensus 173 ~g~i~ 177 (180)
T cd03214 173 DGRIV 177 (180)
T ss_pred CCEEE
Confidence 67653
No 243
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=27.07 E-value=3.1e+02 Score=22.69 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 25 NLATAERLVRAAHGKG-ANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g-~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
......+.+.+....+ +-+|+=|=..-.|.... ..++++.|+++++++++.+++
T Consensus 162 ~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~--------------~~~~l~~l~~lc~~~gillI~ 216 (339)
T PF00202_consen 162 CLNALEELIAALNADEIAAVIVEPIQGEGGMIPP--------------PPEYLRELRELCREHGILLIA 216 (339)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE---------------TTHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHhhcCCcEEEEEEeccccccCcccc--------------ccchhhehcccccccccceec
Confidence 3444444444443333 55777774444333211 157899999999999999985
No 244
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=27.04 E-value=1.8e+02 Score=24.50 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCC
Q 029167 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (198)
Q Consensus 35 ~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G 113 (198)
.|...+++++++=|-+.. .... . .....+.|+++.++.++++++-+....+ -.+.+..+++ .+|
T Consensus 147 RAL~~~P~llLLDEP~s~-LD~~-----~--------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl-~~G 211 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSN-LDAK-----L--------RVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM-NGG 211 (356)
T ss_pred HHHhcCCCEEEEeCCccc-CCHH-----H--------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-eCC
Confidence 344457888888885532 1100 0 0244566777777778888776554332 3445667777 478
Q ss_pred Ceee
Q 029167 114 SDLG 117 (198)
Q Consensus 114 ~il~ 117 (198)
++..
T Consensus 212 ~i~~ 215 (356)
T PRK11650 212 VAEQ 215 (356)
T ss_pred EEEE
Confidence 8753
No 245
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=26.96 E-value=3.3e+02 Score=21.75 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEee
Q 029167 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~ 94 (198)
...+.+.++.|.+.++++|=+.-....... ...+.+....+.+.+.++.+++..
T Consensus 92 ~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~---------------~~~~~l~~a~~~a~~~gvlvv~Aa 145 (267)
T cd07476 92 QLDLARAINLALEQGAHIINISGGRLTQTG---------------EADPILANAVAMCQQNNVLIVAAA 145 (267)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCcCCCCC---------------CCCHHHHHHHHHHHHCCCEEEEec
Confidence 345667888888899999987643321100 013445555566778899998743
No 246
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=1.5e+02 Score=25.61 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=29.7
Q ss_pred CccEEEEEeCCCCC---C----------------HHHHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 029167 7 REVVVSALQFACTD---D----------------VSTNLATAERLVRAAHGKGANIILIQELFE 51 (198)
Q Consensus 7 ~~~~ia~~Q~~~~~---~----------------~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~ 51 (198)
++-||+++|+.++. | +.+-.+-+....++.++.|+.+++..-..+
T Consensus 237 ekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSIL 300 (534)
T KOG0358|consen 237 EKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSIL 300 (534)
T ss_pred hhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHH
Confidence 46899999999831 1 123334445556667778999998876443
No 247
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=26.86 E-value=2e+02 Score=22.84 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=16.1
Q ss_pred HHHHHHHhCC-CcEEEeCCCCCC
Q 029167 31 RLVRAAHGKG-ANIILIQELFEG 52 (198)
Q Consensus 31 ~~i~~A~~~g-~dlvv~PE~~~~ 52 (198)
+..+.|.+.+ +|+|..||..-.
T Consensus 88 kv~R~Av~~~rVDil~~p~~~r~ 110 (229)
T COG1603 88 KVNRAAVENKRVDILSHPETGRK 110 (229)
T ss_pred HHHHHHHhccCccEEEcccccCC
Confidence 3456676665 999999996554
No 248
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=26.85 E-value=1.9e+02 Score=23.95 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 73 HPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 73 ~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
....+.|+++.++.++++++-+..... ..+.+.++++ .+|+++.
T Consensus 195 ~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm-~~G~ive 239 (330)
T PRK15093 195 AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL-YCGQTVE 239 (330)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-ECCEEEE
Confidence 355677777777778888775544322 2344566677 3677643
No 249
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=26.76 E-value=2.1e+02 Score=23.96 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.++.++.+.++++-...... ..+.+..+++. +|++..
T Consensus 166 ~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~-~G~i~~ 209 (352)
T PRK11144 166 ELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLE-QGKVKA 209 (352)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEe-CCEEEE
Confidence 44566777777767777765544322 34456667774 787654
No 250
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=26.71 E-value=3.2e+02 Score=21.56 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCC--ccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh--CCEEEEeeee
Q 029167 27 ATAERLVRAAHGKGANIILIQELFEG--YYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL--GVVMPVSFFE 96 (198)
Q Consensus 27 ~~i~~~i~~A~~~g~dlvv~PE~~~~--g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~--~i~iv~g~~~ 96 (198)
..+++.+++|.+.|.+.+.|-|.+.. .+........... .. -..+.+.+.++.+++ +|.|..|.-.
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~--~~--~~~Y~~~i~~l~~~y~~~i~I~~GiE~ 84 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAF--SS--LPEYFKEINRLKKEYADKLKILIGLEV 84 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhH--HH--HHHHHHHHHHHHHHhhCCCeEEEEEEe
Confidence 45788899999999999999998753 1211100000000 00 135667777777776 6888888664
No 251
>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=26.68 E-value=1.8e+02 Score=24.82 Aligned_cols=27 Identities=11% Similarity=-0.143 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHh--CCCcEEEeCCCCCC
Q 029167 26 LATAERLVRAAHG--KGANIILIQELFEG 52 (198)
Q Consensus 26 ~~~i~~~i~~A~~--~g~dlvv~PE~~~~ 52 (198)
.+.+.+..+...+ .+-.+++|||..-.
T Consensus 148 ~~~l~~~~~~l~~~~~~~wllIFPEGTR~ 176 (376)
T PLN02380 148 ENTLKSGFQRLKDFPRPFWLALFVEGTRF 176 (376)
T ss_pred HHHHHHHHHHHhhCCCccEEEEecCcCCC
Confidence 3444455544443 25669999998763
No 252
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.54 E-value=2.2e+02 Score=21.50 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=28.7
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEee
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~ 94 (198)
.++++.+.|+|.|+++-.+. ......+.+.++++|+.+.+++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~---------------------~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD---------------------DATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC---------------------HHHHHHHHHHHHHcCCEEEEEe
Confidence 36667777888888773321 1234667777888999998764
No 253
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=26.41 E-value=1.6e+02 Score=20.26 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=15.7
Q ss_pred eeEEEEEEEcCCCCeeeeeee
Q 029167 101 AHYNSIAIIDADGSDLGLYRK 121 (198)
Q Consensus 101 ~~yNs~~~i~~~G~il~~y~K 121 (198)
....+.++++++|+++..+.-
T Consensus 108 ~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 108 LAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred ceeEEEEEECCCCcEEEEEec
Confidence 345678999999998766553
No 254
>PRK09453 phosphodiesterase; Provisional
Probab=26.41 E-value=88 Score=23.23 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe
Q 029167 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILI 46 (198)
Q Consensus 9 ~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~ 46 (198)
|||+++- |...|...+.++++.+.+.++|.|++
T Consensus 1 mri~viS-----D~Hg~~~~~~~~l~~~~~~~~d~ii~ 33 (182)
T PRK09453 1 MKLMFAS-----DTHGSLPATEKALELFAQSGADWLVH 33 (182)
T ss_pred CeEEEEE-----eccCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4555543 44444555566666666678887775
No 255
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.39 E-value=2.1e+02 Score=23.06 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.++.++.+..+++....... ..+.+..+++. +|+++
T Consensus 188 ~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~-~G~i~ 230 (289)
T PRK13645 188 DFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH-EGKVI 230 (289)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCEEE
Confidence 34455666666667777665444332 34556777774 78764
No 256
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=26.34 E-value=2e+02 Score=23.84 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLGL 118 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~~ 118 (198)
...+.|.++.++.+..+++-+..... ..+.+..+++ .+|+++..
T Consensus 199 ~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm-~~G~ive~ 243 (330)
T PRK09473 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM-YAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE-ECCEEEEE
Confidence 45567777777778888775544322 2345677777 47887653
No 257
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=26.26 E-value=2e+02 Score=22.79 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.++.++.+.++++....... ..+.+.++++. +|+++.
T Consensus 171 ~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~-~G~i~~ 214 (257)
T PRK11247 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIE-EGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEe
Confidence 34456677666667777765544332 34456677774 687654
No 258
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=26.17 E-value=2.4e+02 Score=22.36 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.++.++.+.++++....... ..+.+..++++ +|+++.
T Consensus 188 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~ 231 (265)
T TIGR02769 188 VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD-KGQIVE 231 (265)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe-CCEEEE
Confidence 34566777766657777765544332 23556777784 787654
No 259
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.04 E-value=2.4e+02 Score=22.46 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+..+++....... ..+.+..+++. +|++.
T Consensus 198 ~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~-~G~i~ 240 (269)
T cd03294 198 EMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK-DGRLV 240 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEEE
Confidence 44456666666657777765554332 34456677774 78764
No 260
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=25.99 E-value=2e+02 Score=23.81 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLGL 118 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~~ 118 (198)
..++.|.++.++.+..+++-+..... ..+.+..+++ .+|+++..
T Consensus 191 ~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm-~~G~ive~ 235 (326)
T PRK11022 191 QIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM-YAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEEE
Confidence 55677888887778888775544322 2345566677 36876543
No 261
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=25.87 E-value=3.2e+02 Score=21.28 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEee
Q 029167 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~ 94 (198)
....+.+.++.|.+.++++|-+.-. +.. .+.++...+.+.+.++.+++..
T Consensus 78 ~~~~i~~ai~~a~~~g~~VIn~S~g---~~~-----------------~~~l~~ai~~a~~~gilvv~Aa 127 (239)
T cd05561 78 SALALARALDWLAEQGVRVVNISLA---GPP-----------------NALLAAAVAAAAARGMVLVAAA 127 (239)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCCC---CCC-----------------CHHHHHHHHHHHHCCCEEEEec
Confidence 4556778889999999999988632 110 2344445555667789888754
No 262
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.80 E-value=2e+02 Score=18.83 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 119 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y 119 (198)
+.++.+.+.+++.|+.+..+......+ .+.++.||+|..+..|
T Consensus 71 ~~~~~~~~~~~~~g~~v~~~~~~~~~g---~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 71 AAVDALYAEWQAKGVKIIQEPTEMDFG---YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHHHCCCeEecCccccCCc---cEEEEECCCCCEEEee
Confidence 456667777777888887543222223 2578999999876544
No 263
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.73 E-value=2.1e+02 Score=22.09 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=35.4
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.+++++++.+.++++....... ....+..+++. +|+
T Consensus 144 al~~~p~llllDEP~~g-LD~~~-------------~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~-~G~ 208 (232)
T cd03300 144 ALVNEPKVLLLDEPLGA-LDLKL-------------RKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN-KGK 208 (232)
T ss_pred HHhcCCCEEEEcCCccc-CCHHH-------------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE-CCE
Confidence 44456777777775432 11100 0244466677766667777765544332 23445667774 677
Q ss_pred e
Q 029167 115 D 115 (198)
Q Consensus 115 i 115 (198)
+
T Consensus 209 ~ 209 (232)
T cd03300 209 I 209 (232)
T ss_pred E
Confidence 5
No 264
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=25.68 E-value=2.1e+02 Score=22.47 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++....... ..+.+.++++ .+|++.
T Consensus 178 ~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l-~~G~i~ 220 (254)
T PRK10418 178 RILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM-SHGRIV 220 (254)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 44566777777667777765544332 2344667777 478764
No 265
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.65 E-value=3.9e+02 Score=22.23 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.|++.+.++++...+.+..+-=++--.++...-.....++.+.+ .+.++.+.++++++++-+.+
T Consensus 49 ~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~-----~~~l~~iG~~a~~~~iRLS~ 112 (312)
T TIGR00629 49 ANLRDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFA-----QKELREIGELAKTHQHRLTF 112 (312)
T ss_pred HHHHHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHH-----HHHHHHHHHHHHHcCeEEEE
Confidence 57778888888888888777665544433222111011222221 36778999999999999987
No 266
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=25.58 E-value=2.9e+02 Score=21.23 Aligned_cols=61 Identities=18% Similarity=0.036 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH-hCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEee
Q 029167 27 ATAERLVRAAH-GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (198)
Q Consensus 27 ~~i~~~i~~A~-~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~ 94 (198)
+.+...++++. +.++++||+==+..-...... ..+..+. ....+.|+++|+++++++++-.
T Consensus 109 ~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~-~~~~~~~------~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 109 SDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKK-GNRQQEV------AEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCC-CCHHHHH------HHHHHHHHHHHHHhCCeEEEec
Confidence 34444444442 348899888654332111000 0001111 3567889999999999998744
No 267
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=25.47 E-value=2.5e+02 Score=22.24 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.+++++.+..+++....... ..+.+.++++. +|+
T Consensus 161 al~~~p~lllLDEPt~~-LD~~~-------------~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~-~G~ 225 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSA-LDIAH-------------QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR-GGE 225 (265)
T ss_pred HHhcCCCEEEEcCCccc-CCHHH-------------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCe
Confidence 44456777777774432 11100 0234566777766667777665444332 23456667774 788
Q ss_pred eee
Q 029167 115 DLG 117 (198)
Q Consensus 115 il~ 117 (198)
+..
T Consensus 226 i~~ 228 (265)
T PRK10575 226 MIA 228 (265)
T ss_pred EEE
Confidence 653
No 268
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=25.44 E-value=1.7e+02 Score=24.44 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=40.0
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..+.. .....+.|.++.+ .+.++++......+ ..+.+.+++++ +|+
T Consensus 186 aL~~~P~lLiLDEPt~g-LD~~~-------------r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~-~G~ 249 (340)
T PRK13536 186 ALINDPQLLILDEPTTG-LDPHA-------------RHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLE-AGR 249 (340)
T ss_pred HHhcCCCEEEEECCCCC-CCHHH-------------HHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence 34457888888885543 21110 1244566666655 47888876665443 45677788884 788
Q ss_pred eeee
Q 029167 115 DLGL 118 (198)
Q Consensus 115 il~~ 118 (198)
++..
T Consensus 250 i~~~ 253 (340)
T PRK13536 250 KIAE 253 (340)
T ss_pred EEEE
Confidence 7643
No 269
>PRK06724 hypothetical protein; Provisional
Probab=25.37 E-value=2.4e+02 Score=19.60 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeeee
Q 029167 72 DHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLGL 118 (198)
Q Consensus 72 ~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~~ 118 (198)
+.+-++.+.+.+++.|+.++.+-..... +.-+-++++.||+|..+-.
T Consensus 73 ~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl 120 (128)
T PRK06724 73 NRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEV 120 (128)
T ss_pred ChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEE
Confidence 3567888999999999988754222211 1223377899999987643
No 270
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=25.21 E-value=1.3e+02 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 029167 20 DDVSTNLATAERLVRAAHGKGANIILIQELFE 51 (198)
Q Consensus 20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~ 51 (198)
...+..++++.+.+.+|.++|+.+||+---..
T Consensus 135 ~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~~ 166 (287)
T PF04898_consen 135 EGLEEALDRLCEEAEAAVREGANILILSDRNA 166 (287)
T ss_dssp TCHHHHHHHHHHHHHHHHHCT-SEEEEESTC-
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEECCCCC
Confidence 56889999999999999999999999976553
No 271
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.15 E-value=2.2e+02 Score=20.29 Aligned_cols=63 Identities=21% Similarity=0.152 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 31 RLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 31 ~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
+.++..++.++|-|++-=-+-.|+..... +.......+. .+.+.++.+.+++.||.+++=+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt--~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPT--KVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccC--CCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 34455555688888885554444332211 1222233344 688899999999999999874443
No 272
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=24.97 E-value=1.6e+02 Score=21.41 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=38.5
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEc
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIID 110 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~ 110 (198)
.+.+|...+++++++=|-+.. ..... .....+.+++++++ +.++++-...... ....+..+++
T Consensus 92 ~laral~~~p~illlDEP~~~-LD~~~-------------~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l- 155 (163)
T cd03216 92 EIARALARNARLLILDEPTAA-LTPAE-------------VERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVL- 155 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcC-CCHHH-------------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-
Confidence 344556678999999886543 11110 02444566666544 6666664443322 3445667777
Q ss_pred CCCCee
Q 029167 111 ADGSDL 116 (198)
Q Consensus 111 ~~G~il 116 (198)
.+|++.
T Consensus 156 ~~g~i~ 161 (163)
T cd03216 156 RDGRVV 161 (163)
T ss_pred ECCEEE
Confidence 467754
No 273
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.97 E-value=2.5e+02 Score=22.59 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhCCEEEE
Q 029167 74 PTILKMQELAKELGVVMPV 92 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~ 92 (198)
+..+.+.+.++++++..+.
T Consensus 129 ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 129 EEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 4556788888999988775
No 274
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=24.94 E-value=1.1e+02 Score=25.59 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=39.8
Q ss_pred CCCCCccEEEEEeCCC--CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 029167 3 KGKRREVVVSALQFAC--TDDVSTNLATAERLVRAAHGKGANIILIQELFEG 52 (198)
Q Consensus 3 ~~~~~~~~ia~~Q~~~--~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~ 52 (198)
+.++...|+-.+|-+. .+.++-.++.|.+.++..++.+.++|||-..|-.
T Consensus 160 ~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYG 211 (416)
T COG4100 160 TAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYG 211 (416)
T ss_pred HhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccch
Confidence 3455678899999887 5666777888999999888889999999876543
No 275
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.89 E-value=1.7e+02 Score=22.68 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=28.6
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
.+++|.+.|++++|-|-+ ...+.+.++++++..+-|...
T Consensus 68 ~a~~ai~aGA~FivSP~~--------------------------~~~vi~~a~~~~i~~iPG~~T 106 (201)
T PRK06015 68 QFEDAAKAGSRFIVSPGT--------------------------TQELLAAANDSDVPLLPGAAT 106 (201)
T ss_pred HHHHHHHcCCCEEECCCC--------------------------CHHHHHHHHHcCCCEeCCCCC
Confidence 456677778888887741 145777889999999988664
No 276
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=24.80 E-value=2e+02 Score=24.26 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|+++.++.+.++++-...... ..+.+..+++. +|++..
T Consensus 171 ~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~-~G~i~~ 214 (369)
T PRK11000 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQ 214 (369)
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEE
Confidence 44566777777777777765544332 34556777774 788654
No 277
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.52 E-value=3e+02 Score=20.53 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC--CeeEEEEEEEc
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN--NAHYNSIAIID 110 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~--~~~yNs~~~i~ 110 (198)
+..|...+++++++=|-+.. ..... .....+.+++++++ +.++++....... ....+..+++.
T Consensus 119 la~al~~~p~vlllDEP~~~-LD~~~-------------~~~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~ 183 (192)
T cd03232 119 IGVELAAKPSILFLDEPTSG-LDSQA-------------AYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLK 183 (192)
T ss_pred HHHHHhcCCcEEEEeCCCcC-CCHHH-------------HHHHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEc
Confidence 34556678999999996543 11110 02344556666543 6666665444321 33456677774
Q ss_pred CCCCee
Q 029167 111 ADGSDL 116 (198)
Q Consensus 111 ~~G~il 116 (198)
.+|+++
T Consensus 184 ~~g~i~ 189 (192)
T cd03232 184 RGGKTV 189 (192)
T ss_pred CCCeEE
Confidence 227754
No 278
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=24.48 E-value=1.9e+02 Score=24.90 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=40.4
Q ss_pred HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcC
Q 029167 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~ 111 (198)
+.+|..++++++++=|-+.. ..... .....+.|+++++ .+.++++....... .++.+..++++
T Consensus 150 IArAL~~~P~iLLLDEPtsg-LD~~~-------------~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~- 213 (402)
T PRK09536 150 LARALAQATPVLLLDEPTAS-LDINH-------------QVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLA- 213 (402)
T ss_pred HHHHHHcCCCEEEEECCccc-CCHHH-------------HHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEE-
Confidence 33455567888888885542 11110 0245566777765 47777776555433 35667778884
Q ss_pred CCCeee
Q 029167 112 DGSDLG 117 (198)
Q Consensus 112 ~G~il~ 117 (198)
+|+++.
T Consensus 214 ~G~iv~ 219 (402)
T PRK09536 214 DGRVRA 219 (402)
T ss_pred CCEEEE
Confidence 787653
No 279
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=24.46 E-value=1.7e+02 Score=26.89 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 29 AERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 29 i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+.+.+ ++.++|-.+++|||..-+... . + .+...-...+|++.+++|+-
T Consensus 87 ~~~~~-~~l~~g~~~~iFPEGtr~~~~--~----~---------~~~k~G~~~~a~~~~~pivP 134 (718)
T PRK08043 87 IKHLV-RLVEQGRPVVIFPEGRITVTG--S----L---------MKIYDGAGFVAAKSGATVIP 134 (718)
T ss_pred HHHHH-HHHhCCCEEEEeCCCccCCCC--C----c---------cCcchHHHHHHHHCCCCEEE
Confidence 44333 445678899999999765211 0 0 12223455567777887753
No 280
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=24.29 E-value=2.2e+02 Score=25.26 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|++++++.+.++++-...... ..+.+..+++ .+|+++.
T Consensus 463 ~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l-~~G~i~~ 506 (529)
T PRK15134 463 QILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL-RQGEVVE 506 (529)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEE-ECCEEEE
Confidence 45567777777767777765544322 3455677777 4788753
No 281
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=24.26 E-value=2.1e+02 Score=23.25 Aligned_cols=56 Identities=20% Similarity=0.142 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE-eee
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFF 95 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~-g~~ 95 (198)
.+.+...++.+.|.+.|+|-|+..= +.|.... .....+.+++++...++++++ -.|
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~---P~y~~~~-------------~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVT---PFYYPFS-------------FEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC---CcCCCCC-------------HHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 3466677778888888888665431 1121100 135567777777776666665 444
No 282
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=24.21 E-value=2.9e+02 Score=22.71 Aligned_cols=52 Identities=25% Similarity=0.234 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
.+.++++...+.|+|.|.+.+ +..++.. +..+.++. .+...++.+..++.+.
T Consensus 183 ~~~~~~~~~~~~G~d~i~~~d-~~~~~is---p~~f~e~~-----~P~~k~i~~~i~~~g~ 234 (343)
T PF01208_consen 183 FIIEYAKAQIEAGADGIFIFD-SSGSLIS---PEMFEEFI-----LPYLKKIIDAIKEAGK 234 (343)
T ss_dssp HHHHHHHHHHHTT-SEEEEEE-TTGGGS----HHHHHHHT-----HHHHHHHHHHHHHHET
T ss_pred HHHHHHHHHHHhCCCcccccc-cccCCCC---HHHHHHHH-----HHHHHHHHHHHHHhCC
Confidence 344455566778999999999 3333322 33455554 3777888888888776
No 283
>PLN02591 tryptophan synthase
Probab=24.03 E-value=2.9e+02 Score=22.13 Aligned_cols=27 Identities=4% Similarity=-0.135 Sum_probs=19.0
Q ss_pred EeeeecccCCcccccc--CCCCccccccc
Q 029167 155 LICFFDLIFDDDFPSR--LDFPLPFLNRF 181 (198)
Q Consensus 155 ~~IC~d~~~pe~~r~~--~~~~~~~~~~~ 181 (198)
+++.+.+.-+|.++.. .|||-+++.++
T Consensus 192 v~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 192 VAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred eEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 4456778888888886 56888776443
No 284
>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=24.02 E-value=1.4e+02 Score=25.51 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=9.8
Q ss_pred CCcEEEeCCCCC
Q 029167 40 GANIILIQELFE 51 (198)
Q Consensus 40 g~dlvv~PE~~~ 51 (198)
...+++|||..-
T Consensus 172 ~~~LvIFPEGTR 183 (374)
T PLN02510 172 PLWLALFPEGTD 183 (374)
T ss_pred CcEEEEeCCcCC
Confidence 467999999875
No 285
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=23.97 E-value=2.9e+02 Score=21.75 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcC-CCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA-DGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~-~G~il~ 117 (198)
...+.|.+++++.+.++++....... ..+.+..+++.. +|+++.
T Consensus 166 ~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 166 QMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 34455666655557777665444322 345566777753 577643
No 286
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=23.97 E-value=2.8e+02 Score=22.22 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
..+.++++..++.++|.|++|..=.++. +....+++.++++..+..+-+
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALa-------------------d~~l~erl~~lak~~~~rv~~ 117 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALA-------------------DEGLRERLRELAKCGGARVYL 117 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhcc-------------------ChHHHHHHHHHHhcCCcEEEe
Confidence 3567788888899999999998765553 146778888999888766644
No 287
>PRK07695 transcriptional regulator TenI; Provisional
Probab=23.93 E-value=2.8e+02 Score=20.94 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHHHhCCCcEEEeCCCCCC
Q 029167 33 VRAAHGKGANIILIQELFEG 52 (198)
Q Consensus 33 i~~A~~~g~dlvv~PE~~~~ 52 (198)
+.+|.+.|+|.|+++..+.+
T Consensus 108 a~~a~~~Gadyi~~g~v~~t 127 (201)
T PRK07695 108 AIQAEKNGADYVVYGHVFPT 127 (201)
T ss_pred HHHHHHcCCCEEEECCCCCC
Confidence 45566789999999876654
No 288
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=23.66 E-value=40 Score=18.12 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=7.6
Q ss_pred eeecccCCc
Q 029167 157 CFFDLIFDD 165 (198)
Q Consensus 157 IC~d~~~pe 165 (198)
+|||-.||-
T Consensus 22 vCyD~~fPi 30 (34)
T smart00037 22 VCYDQAFPI 30 (34)
T ss_pred eeccccccC
Confidence 699999985
No 289
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=23.52 E-value=3.5e+02 Score=21.29 Aligned_cols=48 Identities=13% Similarity=0.271 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe
Q 029167 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 27 ~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g 93 (198)
....++..++.+.|.+++|. +.. .. .+.+..+.+.+.+++.|..+.++
T Consensus 48 ~~H~e~a~~aL~aGkhVl~~---s~g-Al---------------ad~e~~~~l~~aA~~~g~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLIM---SVG-AL---------------ADRELRERLREVARSSGRKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEEE---CCc-cc---------------CCHHHHHHHHHHHHhcCCEEEEC
Confidence 34567777888889999982 211 11 01355688999999999988875
No 290
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=23.50 E-value=3.8e+02 Score=22.30 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (198)
Q Consensus 30 ~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~ 86 (198)
..+++...+.|+|+|...+.+-+-.+ ++.|.++.. +...++.+..++.
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~ls----p~~f~ef~~-----P~~k~i~~~i~~~ 236 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGALS----PADYREFVL-----PYMKRIVAELKRE 236 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCccccCC----HHHHHHHHH-----HHHHHHHHHHHHh
Confidence 33445456679999988776332222 334555553 5556666666665
No 291
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.50 E-value=2.1e+02 Score=22.89 Aligned_cols=65 Identities=8% Similarity=0.069 Sum_probs=34.9
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCe
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~i 115 (198)
|...+++++++=|-+..- .... .....+.++++.+ .+.++++.....+.-...+.++++ .+|++
T Consensus 150 al~~~p~lllLDEPt~gL-D~~~-------------~~~l~~~l~~l~~-~g~til~~tH~~~~~~~~d~v~~l-~~G~i 213 (274)
T PRK13644 150 ILTMEPECLIFDEVTSML-DPDS-------------GIAVLERIKKLHE-KGKTIVYITHNLEELHDADRIIVM-DRGKI 213 (274)
T ss_pred HHHcCCCEEEEeCCcccC-CHHH-------------HHHHHHHHHHHHh-CCCEEEEEecCHHHHhhCCEEEEE-ECCEE
Confidence 344567777777754421 1100 0234455666554 477777655443322346777888 47886
Q ss_pred e
Q 029167 116 L 116 (198)
Q Consensus 116 l 116 (198)
+
T Consensus 214 ~ 214 (274)
T PRK13644 214 V 214 (274)
T ss_pred E
Confidence 4
No 292
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=23.42 E-value=1.5e+02 Score=24.03 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 029167 20 DDVSTNLATAERLVRAAHGKGANIILIQELFE 51 (198)
Q Consensus 20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~ 51 (198)
.+.+..++.+.+..++.+.++..+=||||..=
T Consensus 143 ~r~~~Ai~~l~~~~~~mkk~~~kvWvFPEGTR 174 (276)
T KOG2848|consen 143 SRREKAIDTLDKCAERMKKENRKVWVFPEGTR 174 (276)
T ss_pred CCHHHHHHHHHHHHHHHHhCCeeEEEccCCcc
Confidence 35677788888888888888999999999765
No 293
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=23.27 E-value=2.1e+02 Score=23.25 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|.-.+++++++=|-+.. ..+.. .....+.+.+++++ +.++++....... ..+.+..+++ .+|+
T Consensus 138 al~~~p~lllLDEPt~g-LD~~~-------------~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l-~~G~ 201 (302)
T TIGR01188 138 SLIHQPDVLFLDEPTTG-LDPRT-------------RRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAII-DHGR 201 (302)
T ss_pred HHhcCCCEEEEeCCCcC-CCHHH-------------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEE-ECCE
Confidence 34456778888775542 11110 02344556666544 7777776554432 3455667777 4788
Q ss_pred eee
Q 029167 115 DLG 117 (198)
Q Consensus 115 il~ 117 (198)
++.
T Consensus 202 i~~ 204 (302)
T TIGR01188 202 IIA 204 (302)
T ss_pred EEE
Confidence 654
No 294
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=23.23 E-value=3.1e+02 Score=21.86 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 88 (198)
..|...+...++...+.+.-+.+|||..=.--.... ++. ..+.+ ..+++.++.+|++.++
T Consensus 98 ~~~~~alk~~~~lLk~G~~~i~IfPEGtR~r~~~~g---~~~--p~~Fd-~~~~~~~~~La~~s~~ 157 (235)
T cd07985 98 KANLATLKEMQQLLNEGGQLIWVAPSGGRDRPDANG---EWY--PDPFD-PSAVEMMRLLAQKSRV 157 (235)
T ss_pred hccHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCC---Ccc--CCccc-hHHHHHHHHHHHhcCC
Confidence 366777777776665545447899997543211111 111 11122 5778889999988776
No 295
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.22 E-value=2.3e+02 Score=22.66 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=36.8
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+..- .... .....+.|.+++++ +.++++-...... ..+.+.++++ .+|+
T Consensus 152 aL~~~p~llllDEPt~~L-D~~~-------------~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l-~~G~ 215 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYL-DPRG-------------QETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVL-KEGR 215 (274)
T ss_pred HHHcCCCEEEEECCCcCC-CHHH-------------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-ECCE
Confidence 444577888887755431 1100 02444566666554 7777765554432 3456777788 4788
Q ss_pred ee
Q 029167 115 DL 116 (198)
Q Consensus 115 il 116 (198)
++
T Consensus 216 i~ 217 (274)
T PRK13647 216 VL 217 (274)
T ss_pred EE
Confidence 65
No 296
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=23.22 E-value=2.3e+02 Score=23.82 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=39.6
Q ss_pred HHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCC
Q 029167 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (198)
Q Consensus 35 ~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G 113 (198)
+|....++++++=|-+.. ... .. .....+.|+++.++.++++++-+....+ -.+.+..++++ +|
T Consensus 149 RaL~~~P~lLLLDEP~s~-LD~-----~~--------r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~-~G 213 (351)
T PRK11432 149 RALILKPKVLLFDEPLSN-LDA-----NL--------RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN-KG 213 (351)
T ss_pred HHHHcCCCEEEEcCCccc-CCH-----HH--------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CC
Confidence 344456788888774432 110 00 0244566777777778888776554433 34557777884 78
Q ss_pred Ceee
Q 029167 114 SDLG 117 (198)
Q Consensus 114 ~il~ 117 (198)
++..
T Consensus 214 ~i~~ 217 (351)
T PRK11432 214 KIMQ 217 (351)
T ss_pred EEEE
Confidence 7654
No 297
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=23.17 E-value=2.3e+02 Score=22.47 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+..+++-...... ..+.+..++++ +|++.
T Consensus 189 ~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~-~G~i~ 231 (268)
T PRK10419 189 GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD-NGQIV 231 (268)
T ss_pred HHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE-CCEEe
Confidence 34566777777667777765554433 23557777784 67764
No 298
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=23.14 E-value=3.7e+02 Score=21.06 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee-e-ccCCeeE
Q 029167 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-E-EANNAHY 103 (198)
Q Consensus 26 ~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~-~-~~~~~~y 103 (198)
.+.+.+.+++++ +++|+||.==.+-.-|.. . ..+..+.+.+...+.|+-+++|.- + ..+=..|
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~---------~-----p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y 234 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHWGIEYEN---------Y-----PTPEQRELARALIDAGADIIIGHHPHVIQPVEIY 234 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEeccCCCCCC---------C-----CCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEE
Confidence 378888999987 689998875555322211 0 135566677777778999998633 2 2333455
Q ss_pred EEEEEE
Q 029167 104 NSIAII 109 (198)
Q Consensus 104 Ns~~~i 109 (198)
+..+++
T Consensus 235 ~~~~I~ 240 (250)
T PF09587_consen 235 KGKPIF 240 (250)
T ss_pred CCEEEE
Confidence 444443
No 299
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=23.12 E-value=2.5e+02 Score=22.23 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEE
Q 029167 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIA 107 (198)
Q Consensus 28 ~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~ 107 (198)
+.+-.+.+|...++++|+.=|-+-. . +.......++.+++++++.+.++++-+....=-.+.+..+
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgn--L------------D~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i 213 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGN--L------------DSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI 213 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCcccc--C------------ChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEE
Confidence 3344566666778899999884421 1 0001146678889999998888876544332223444555
Q ss_pred EEcCCCC
Q 029167 108 IIDADGS 114 (198)
Q Consensus 108 ~i~~~G~ 114 (198)
.+ .+|+
T Consensus 214 ~l-~dG~ 219 (226)
T COG1136 214 EL-KDGK 219 (226)
T ss_pred EE-eCCe
Confidence 55 4665
No 300
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=23.09 E-value=2.2e+02 Score=25.07 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|++++++.+.++++-...... ..+.+..+++ .+|+++
T Consensus 465 ~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l-~~G~i~ 507 (520)
T TIGR03269 465 DVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALM-RDGKIV 507 (520)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 45566777777778777765544322 3455667777 478764
No 301
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=23.04 E-value=3.7e+02 Score=23.65 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCC-ccCcchhh-hH-HHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 30 ERLVRAAHGKGANIILIQELFEG-YYFCQAQR-ED-FFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 30 ~~~i~~A~~~g~dlvv~PE~~~~-g~~~~~~~-~~-~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
-.-+.+|.+.|++++++=|=... .|...+.+ +. +....+++ -++.+.++++-+++|+..++
T Consensus 330 AAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPI--TPfidrvr~l~~~~GvStIl 393 (448)
T PF09818_consen 330 AANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPI--TPFIDRVRSLYEKLGVSTIL 393 (448)
T ss_pred HHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCc--chHHHHHHHHHHHcCceEEE
Confidence 34556777889999999996543 33332221 11 11223444 48889999999999887654
No 302
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=22.96 E-value=2.5e+02 Score=23.35 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.++.++++..+++-+..... ..+-+..+++ .+|+++.
T Consensus 199 ~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl-~~G~ive 242 (331)
T PRK15079 199 QVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM-YLGHAVE 242 (331)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEE
Confidence 45567777777778888775544322 2344566666 3677653
No 303
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=22.65 E-value=73 Score=23.34 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=37.3
Q ss_pred HhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEE
Q 029167 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (198)
Q Consensus 37 ~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i 90 (198)
.+-+-++++-|-+++.+....+-+++|...+.+....+.++.+.+..++....+
T Consensus 67 ~d~~gevL~VsQFTL~~~~~KG~rP~F~~a~~~e~A~~ly~~fv~~l~~~~~~V 120 (145)
T cd00563 67 KDVNGEILVVSQFTLYADTKKGRRPSFSAAAPPDKAEPLYESFVELLREKGIKV 120 (145)
T ss_pred hhcCCCEEEEEccccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 344679999999999876656667888877665444566677777776654333
No 304
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.62 E-value=3.2e+02 Score=21.51 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCC-----CCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDAD-----GSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~-----G~il 116 (198)
...+.|.+++++.+.++++-...... ..+.+..+++. + |+++
T Consensus 188 ~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~-~~~~~~G~i~ 235 (261)
T PRK14258 188 KVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK-GNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc-cCCCcCceEE
Confidence 34456666665556776665444332 45667888885 5 7764
No 305
>PRK10785 maltodextrin glucosidase; Provisional
Probab=22.56 E-value=3e+02 Score=25.04 Aligned_cols=68 Identities=12% Similarity=0.232 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCC----ccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEG----YYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~----g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
.+++-|.+.+...++-|++.|-+.=.+-+ ||.. .++..........+.++.|.+.|.+.||.|++=..
T Consensus 176 GDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~----~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 176 GDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDT----EDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCc----ccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 35667777778888889999877654433 2322 23444444444456788899999999999998433
No 306
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.54 E-value=2.2e+02 Score=20.82 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=38.3
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEc
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIID 110 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~ 110 (198)
.+..|...+++++++=|-+..- .... .....+.|++++++ +..+++-...... ....+..++++
T Consensus 105 ~laral~~~p~illlDEPt~~L-D~~~-------------~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~ 169 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGL-DPES-------------RREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILN 169 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCC-CHHH-------------HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEe
Confidence 4556667799999999966532 1110 02455667777665 6666654433322 23445666673
Q ss_pred CCCC
Q 029167 111 ADGS 114 (198)
Q Consensus 111 ~~G~ 114 (198)
+|+
T Consensus 170 -~g~ 172 (173)
T cd03230 170 -NGR 172 (173)
T ss_pred -CCC
Confidence 564
No 307
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=22.54 E-value=91 Score=22.36 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.5
Q ss_pred EEEEEcCCCCeeeeee
Q 029167 105 SIAIIDADGSDLGLYR 120 (198)
Q Consensus 105 s~~~i~~~G~il~~y~ 120 (198)
+.++||++|+++.+|.
T Consensus 125 ttflId~~G~i~~~~~ 140 (152)
T cd00340 125 TKFLVDRDGEVVKRFA 140 (152)
T ss_pred EEEEECCCCcEEEEEC
Confidence 7899999999876654
No 308
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.51 E-value=2.1e+02 Score=22.20 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
.+++|.+.|++++|-|-+ ...+.+.++++++..+-|...
T Consensus 72 ~a~~a~~aGA~FivsP~~--------------------------~~~v~~~~~~~~i~~iPG~~T 110 (204)
T TIGR01182 72 QLRQAVDAGAQFIVSPGL--------------------------TPELAKHAQDHGIPIIPGVAT 110 (204)
T ss_pred HHHHHHHcCCCEEECCCC--------------------------CHHHHHHHHHcCCcEECCCCC
Confidence 455677778888877642 135777889999999988654
No 309
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=22.48 E-value=2.4e+02 Score=23.78 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=40.3
Q ss_pred HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh-CCEEEEeeeeccC-CeeEEEEEEEcC
Q 029167 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPVSFFEEAN-NAHYNSIAIIDA 111 (198)
Q Consensus 34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~-~i~iv~g~~~~~~-~~~yNs~~~i~~ 111 (198)
..|...+++++++=|-+.. .... . .....+.|+++.++. +++++.-+....+ -.+.+..+++ .
T Consensus 149 ARAL~~~P~llLLDEP~s~-LD~~-----~--------r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl-~ 213 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSA-LDAN-----I--------RANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIM-K 213 (362)
T ss_pred HHHHhcCCCEEEEcCcccc-CCHH-----H--------HHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEE-E
Confidence 3444557888888885432 1100 0 034556777777776 7887766554433 3445667777 4
Q ss_pred CCCeee
Q 029167 112 DGSDLG 117 (198)
Q Consensus 112 ~G~il~ 117 (198)
+|+++.
T Consensus 214 ~G~i~~ 219 (362)
T TIGR03258 214 DGRLAA 219 (362)
T ss_pred CCEEEE
Confidence 787653
No 310
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=22.25 E-value=2.2e+02 Score=23.29 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|.-.+++++++=|-+.. ..+.. .....+.|.++.+ .+.++++......+ ..+.+.+++++ +|+
T Consensus 152 aL~~~P~lllLDEPt~g-LD~~~-------------~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~-~G~ 215 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTG-LDPQA-------------RHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIE-EGR 215 (306)
T ss_pred HHhCCCCEEEEeCCCcC-CCHHH-------------HHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence 44457888888885543 11110 0234455666643 47888876655433 34556777784 687
Q ss_pred eeee
Q 029167 115 DLGL 118 (198)
Q Consensus 115 il~~ 118 (198)
++..
T Consensus 216 i~~~ 219 (306)
T PRK13537 216 KIAE 219 (306)
T ss_pred EEEE
Confidence 6543
No 311
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.19 E-value=97 Score=24.50 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh-hhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 27 ~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~-~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
+-|.+.+...++.|++-|-++=.+-.+...... ..++..........+-++.|.+.+.++|+.|++=.+.
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 445555556666799988887655443211111 1233333333333455667777788899999985543
No 312
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.16 E-value=2.5e+02 Score=18.72 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHhCCEEEEee
Q 029167 73 HPTILKMQELAKELGVVMPVSF 94 (198)
Q Consensus 73 ~~~~~~l~~~a~~~~i~iv~g~ 94 (198)
.+..+++.++++++++.+.+|+
T Consensus 99 ~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 99 LEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHHHHHHHHHTSCEEEE-
T ss_pred HHHHHHHHHHHHHhCCEEEEeC
Confidence 4667889999999999988874
No 313
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=22.06 E-value=3.1e+02 Score=24.22 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++....... ..+.+..+++ .+|+++
T Consensus 206 ~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l-~~G~i~ 248 (520)
T TIGR03269 206 LVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL-ENGEIK 248 (520)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE-eCCEEe
Confidence 34455677777777777665544322 2345566666 367654
No 314
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=22.01 E-value=2.3e+02 Score=18.17 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~ 118 (198)
+-++.+.+.+++.|+.++.+.-....+ ..++++.||+|..+..
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPWG--QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETTS--EEEEEEE-TTS-EEEE
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCCC--eEEEEEECCCCCEEEe
Confidence 345666667777898887644333233 3688999999987643
No 315
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.95 E-value=2e+02 Score=23.71 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=12.3
Q ss_pred HHhCCCcEEEeCCCCC
Q 029167 36 AHGKGANIILIQELFE 51 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~ 51 (198)
+.+.++|+++.||.-+
T Consensus 180 ~la~gad~iliPE~~~ 195 (301)
T TIGR02482 180 GIATGAEIIIIPEFDY 195 (301)
T ss_pred HHHcCCCEEEECCCCC
Confidence 4455899999999743
No 316
>PLN02361 alpha-amylase
Probab=21.93 E-value=4.3e+02 Score=22.79 Aligned_cols=82 Identities=12% Similarity=0.035 Sum_probs=53.8
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCC----ccCcchhhhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167 11 VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELFEG----YYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (198)
Q Consensus 11 ia~~Q~~~~~-~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~----g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~ 85 (198)
-.+.|.--+. ......+.+.+.+...++.|.+.|-+|-.+-+ ||... ++..........+.++.+.+.+.+
T Consensus 12 ~v~lQ~F~W~~~~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~----d~y~~~~~~Gt~~el~~li~~~h~ 87 (401)
T PLN02361 12 EILLQAFNWESHKHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQ----NLYSLNSAYGSEHLLKSLLRKMKQ 87 (401)
T ss_pred cEEEEEEeccCCccHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcc----cccccCcccCCHHHHHHHHHHHHH
Confidence 3455665532 12346788888899988999999988876532 34333 344433333334667888888999
Q ss_pred hCCEEEEeeee
Q 029167 86 LGVVMPVSFFE 96 (198)
Q Consensus 86 ~~i~iv~g~~~ 96 (198)
+||.+++=.+.
T Consensus 88 ~gi~vi~D~V~ 98 (401)
T PLN02361 88 YNVRAMADIVI 98 (401)
T ss_pred cCCEEEEEEcc
Confidence 99999985554
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=21.88 E-value=3.2e+02 Score=19.83 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=35.9
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcC
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~ 111 (198)
.+.+|...+++++++=|-+.. .. ....+.+.++.++.+.++++-......-...+..++++.
T Consensus 101 ~laral~~~p~~lllDEPt~~-LD-----------------~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l~~ 162 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSA-LD-----------------EESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDG 162 (166)
T ss_pred HHHHHHHcCCCEEEEECCccc-cC-----------------HHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEEcC
Confidence 444556678999999995543 11 234455555555555666554333322235566667755
Q ss_pred CC
Q 029167 112 DG 113 (198)
Q Consensus 112 ~G 113 (198)
.|
T Consensus 163 ~~ 164 (166)
T cd03223 163 EG 164 (166)
T ss_pred CC
Confidence 44
No 318
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=21.83 E-value=4.4e+02 Score=21.73 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167 31 RLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (198)
Q Consensus 31 ~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~ 86 (198)
++++...+.|+|.+...+.+- ++.. ++.|.++.. +..+++.+..++.
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~-~~ls---p~~f~ef~~-----p~~k~i~~~i~~~ 230 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWA-GALS---PEDFEEFVL-----PYLKKIIEEVKAR 230 (338)
T ss_pred HHHHHHHHcCCCEEEEECCcc-ccCC---HHHHHHHHH-----HHHHHHHHHHHHh
Confidence 344444567999998887643 2221 334555553 5556666666654
No 319
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=21.79 E-value=2e+02 Score=24.01 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=11.6
Q ss_pred HHhCCCcEEEeCCCC
Q 029167 36 AHGKGANIILIQELF 50 (198)
Q Consensus 36 A~~~g~dlvv~PE~~ 50 (198)
|.+.++|++++||.-
T Consensus 182 ala~~a~~iliPE~~ 196 (324)
T TIGR02483 182 GIAGGADVILIPEIP 196 (324)
T ss_pred HhccCCCEEEecCCC
Confidence 344589999999963
No 320
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.79 E-value=2.7e+02 Score=18.94 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=25.4
Q ss_pred HhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 37 ~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
...++.+|+..+-+. ....+.+...++.++++++.
T Consensus 30 k~gk~~lVI~A~D~s---------------------~~~kkki~~~~~~~~vp~~~ 64 (104)
T PRK05583 30 KKKKVYLIIISNDIS---------------------ENSKNKFKNYCNKYNIPYIE 64 (104)
T ss_pred HcCCceEEEEeCCCC---------------------HhHHHHHHHHHHHcCCCEEE
Confidence 345688888887443 35667888889999998764
No 321
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=21.72 E-value=2.4e+02 Score=20.63 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEE
Q 029167 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAII 109 (198)
Q Consensus 30 ~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i 109 (198)
+-.+..|...+++++++=|-+.. ..... .....+.+.++.+ .+..+++.......-...+..+++
T Consensus 104 rv~la~al~~~p~~lllDEPt~~-LD~~~-------------~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSH-LDVEG-------------ERALNQAIAALKA-AGATRIVIAHRPETLASADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccc-cCHHH-------------HHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEEE
Confidence 33455666779999999996543 11110 0234456666654 366666544433221235566666
Q ss_pred cCCCC
Q 029167 110 DADGS 114 (198)
Q Consensus 110 ~~~G~ 114 (198)
+ +|+
T Consensus 169 ~-~G~ 172 (173)
T cd03246 169 E-DGR 172 (173)
T ss_pred E-CCC
Confidence 4 564
No 322
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=21.65 E-value=2.6e+02 Score=24.72 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|++++++.+.++++-....+. ..+.+.++++. +|+++.
T Consensus 194 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~-~G~i~~ 237 (529)
T PRK15134 194 QILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ-NGRCVE 237 (529)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE-CCEEEE
Confidence 44566777766667777665443322 34556677774 677653
No 323
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=21.61 E-value=4.3e+02 Score=21.26 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe
Q 029167 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (198)
Q Consensus 27 ~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g 93 (198)
..+.+.++.|.+.++++|-+.-... +.. ..+.++...+.+.+.++.++++
T Consensus 128 ~~i~~Ai~~a~~~g~~IiN~S~G~~--~~~---------------~~~~~~~ai~~a~~~gilvV~A 177 (291)
T cd07483 128 KDIANAIRYAVDNGAKVINMSFGKS--FSP---------------NKEWVDDAIKYAESKGVLIVHA 177 (291)
T ss_pred HHHHHHHHHHHHCCCcEEEeCCCCC--CCC---------------ccHHHHHHHHHHHhCCeEEEEe
Confidence 4566788888899999997763211 110 1244555556677789998874
No 324
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=21.56 E-value=2.6e+02 Score=22.90 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
...+.|.++.+ .+.++++-....+. ..+.+..+++ .+|+++.
T Consensus 203 ~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl-~~G~i~~ 245 (305)
T PRK13651 203 EILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFF-KDGKIIK 245 (305)
T ss_pred HHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEE-ECCEEEE
Confidence 34455666553 47777765554432 3556777888 5788653
No 325
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=21.56 E-value=2.6e+02 Score=23.74 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCC
Q 029167 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (198)
Q Consensus 35 ~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G 113 (198)
+|...+++++++=|-+.. ... .. .....+.|+++.++.+++++.-+....+ -.+.+..+++. +|
T Consensus 157 RaL~~~P~llLLDEP~s~-LD~-----~~--------r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~-~G 221 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSA-LDY-----KL--------RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR-DG 221 (375)
T ss_pred HHHhcCCCEEEEeCCCCc-CCH-----HH--------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CC
Confidence 344456788888774432 110 00 0345567788888778888775544332 34557777774 78
Q ss_pred Ceeee
Q 029167 114 SDLGL 118 (198)
Q Consensus 114 ~il~~ 118 (198)
++...
T Consensus 222 ~i~~~ 226 (375)
T PRK09452 222 RIEQD 226 (375)
T ss_pred EEEEE
Confidence 76543
No 326
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=21.55 E-value=3e+02 Score=19.36 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeee
Q 029167 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120 (198)
Q Consensus 76 ~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~ 120 (198)
++.+.+.+++.|+.++.. +...++.....+++.||+|.++..+.
T Consensus 97 ld~~~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~DPdG~~iel~~ 140 (150)
T TIGR00068 97 VYKACERVRALGGNVVRE-PGPVKGGTTVIAFVEDPDGYKIELIQ 140 (150)
T ss_pred HHHHHHHHHHcCCccccC-CcccCCCceEEEEEECCCCCEEEEEE
Confidence 566677777888877642 22123334457788999998876543
No 327
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.52 E-value=3.2e+02 Score=19.68 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=39.6
Q ss_pred EEEEEeCCC---C-C-----CHHHHHHHHHHHHHHH--HhCCCcEEEeCCCCCCccCcc-hhhhHHHHhcCCCCCChHHH
Q 029167 10 VVSALQFAC---T-D-----DVSTNLATAERLVRAA--HGKGANIILIQELFEGYYFCQ-AQREDFFQRAKPYKDHPTIL 77 (198)
Q Consensus 10 ~ia~~Q~~~---~-~-----~~~~n~~~i~~~i~~A--~~~g~dlvv~PE~~~~g~~~~-~~~~~~~~~a~~~~~~~~~~ 77 (198)
++.+++... . . +.+.-.+.+.++++.+ ...++.+|+..=......... .......+.. ..+.+
T Consensus 63 d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~-----~~~n~ 137 (191)
T cd01834 63 DVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPLPDGAEYNANL-----AAYAD 137 (191)
T ss_pred CEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCCCChHHHHHHH-----HHHHH
Confidence 456666655 1 1 3455555666666666 455788887642211111100 0001111111 35567
Q ss_pred HHHHHHHHhCCEEE
Q 029167 78 KMQELAKELGVVMP 91 (198)
Q Consensus 78 ~l~~~a~~~~i~iv 91 (198)
.++++|+++++.++
T Consensus 138 ~l~~~a~~~~~~~i 151 (191)
T cd01834 138 AVRELAAENGVAFV 151 (191)
T ss_pred HHHHHHHHcCCeEE
Confidence 78899999987776
No 328
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.50 E-value=1.7e+02 Score=22.96 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=28.4
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
.+++|.+.|++++|-|=. -.++.+.+.+++++++-|...
T Consensus 77 q~~~a~~aGa~fiVsP~~--------------------------~~ev~~~a~~~~ip~~PG~~T 115 (211)
T COG0800 77 QARQAIAAGAQFIVSPGL--------------------------NPEVAKAANRYGIPYIPGVAT 115 (211)
T ss_pred HHHHHHHcCCCEEECCCC--------------------------CHHHHHHHHhCCCcccCCCCC
Confidence 455677778888887641 155788889999999888553
No 329
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=21.46 E-value=2.7e+02 Score=23.04 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~ 117 (198)
..++.|.++.++.+..+++-+..... ..+.+..+++ .+|+++.
T Consensus 192 ~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm-~~G~ive 235 (327)
T PRK11308 192 QVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM-YLGRCVE 235 (327)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEE
Confidence 55567777777778887765443221 2344556666 3677653
No 330
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=21.39 E-value=4.5e+02 Score=21.92 Aligned_cols=52 Identities=8% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
++.++.+.+.+.+.. ...|+||+-=...+|.+ .+.+..+.+.+++.++.+++
T Consensus 113 ~~~~~~~l~~~~~~l-~~~d~VvlsGSlP~g~~-----------------~d~y~~li~~~~~~g~~vil 164 (310)
T COG1105 113 EAELEQFLEQLKALL-ESDDIVVLSGSLPPGVP-----------------PDAYAELIRILRQQGAKVIL 164 (310)
T ss_pred HHHHHHHHHHHHHhc-ccCCEEEEeCCCCCCCC-----------------HHHHHHHHHHHHhcCCeEEE
Confidence 456777777777643 35688888766665554 35556677777777777766
No 331
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.36 E-value=2.5e+02 Score=18.42 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~ 117 (198)
+.++.+.+..++.|+.+.. -+...+...|. +++.||+|..+-
T Consensus 82 ~~v~~~~~~l~~~g~~~~~-~~~~~~~g~~~-~~~~DPdG~~iE 123 (125)
T cd07241 82 EAVDELTERLRADGYLIIG-EPRTTGDGYYE-SVILDPEGNRIE 123 (125)
T ss_pred HHHHHHHHHHHHCCCEEEe-CceecCCCeEE-EEEECCCCCEEE
Confidence 4567777777888988764 23222334554 458899998653
No 332
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.34 E-value=3.9e+02 Score=22.38 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCC----------------ccCcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEG----------------YYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (198)
Q Consensus 20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~----------------g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a 83 (198)
.|-...++...++++.|++.|+|.|=|.=+..- .|.......-+... + + ..+....|.+.+
T Consensus 10 ~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e-l-~~e~~~~L~~~~ 86 (327)
T TIGR03586 10 ANHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEA-H-T-PWEWHKELFERA 86 (327)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHh-h-C-CHHHHHHHHHHH
Confidence 345567889999999999999998766432100 01000111122222 2 1 135556788889
Q ss_pred HHhCCEEEEeeee
Q 029167 84 KELGVVMPVSFFE 96 (198)
Q Consensus 84 ~~~~i~iv~g~~~ 96 (198)
+++|+.++..-..
T Consensus 87 ~~~Gi~~~stpfd 99 (327)
T TIGR03586 87 KELGLTIFSSPFD 99 (327)
T ss_pred HHhCCcEEEccCC
Confidence 9999999876443
No 333
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=3.5e+02 Score=21.71 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCccCcchhhh-----HHHHhcCCCCCCh-HHHHHHHHHHHhCCEEEEeeeeccC---C
Q 029167 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQRE-----DFFQRAKPYKDHP-TILKMQELAKELGVVMPVSFFEEAN---N 100 (198)
Q Consensus 30 ~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~-----~~~~~a~~~~~~~-~~~~l~~~a~~~~i~iv~g~~~~~~---~ 100 (198)
-..++.|..-|++-|++|.-...++...-.+. ....... .. ..+.+.++.++.|.+++...+.... .
T Consensus 124 GaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~----~~n~~~~~~~~~~~~G~~v~~t~~~~~~~~~~ 199 (260)
T COG0566 124 GAIIRTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIR----VTNLARTLLELLKEAGFWVVATSLDGEVDLYE 199 (260)
T ss_pred hhHHhhHHHhCCCEEEECCCccCCccceeEEecCChheeceeEE----EeccHHHHHHHHHHcCeEEEEECCCCCcchhh
Confidence 34555566669999999998776665432211 0111111 12 4567888888899999987665411 1
Q ss_pred ee--EEEEEEEcCCCC
Q 029167 101 AH--YNSIAIIDADGS 114 (198)
Q Consensus 101 ~~--yNs~~~i~~~G~ 114 (198)
.. -..+++++..|+
T Consensus 200 ~~~~~~~aLvlG~Eg~ 215 (260)
T COG0566 200 TDLPKKTALVLGNEGE 215 (260)
T ss_pred ccccCCEEEEECCCCC
Confidence 11 356788887775
No 334
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=21.19 E-value=2.6e+02 Score=21.45 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=35.1
Q ss_pred HHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCC
Q 029167 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (198)
Q Consensus 35 ~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G 113 (198)
.|...+++++++=|-+.. ..... .....+.+.+++++ +..+++....... ..+.+..++++ +|
T Consensus 155 ral~~~p~llllDEP~~g-LD~~~-------------~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G 218 (224)
T cd03220 155 IATALEPDILLIDEVLAV-GDAAF-------------QEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLE-KG 218 (224)
T ss_pred HHHhcCCCEEEEeCCccc-CCHHH-------------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE-CC
Confidence 344456788888775542 11100 02445666666655 6666665444322 23446677774 67
Q ss_pred Cee
Q 029167 114 SDL 116 (198)
Q Consensus 114 ~il 116 (198)
++.
T Consensus 219 ~i~ 221 (224)
T cd03220 219 KIR 221 (224)
T ss_pred EEE
Confidence 753
No 335
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=21.19 E-value=2.1e+02 Score=23.81 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHhCCCcEEEeCCCCC
Q 029167 36 AHGKGANIILIQELFE 51 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~ 51 (198)
|.+.++|+++.||.-+
T Consensus 180 ala~ga~~iliPE~~~ 195 (317)
T cd00763 180 GIAGGAEFIVIPEAEF 195 (317)
T ss_pred HHHcCCCEEEeCCCCC
Confidence 4445899999999743
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=21.18 E-value=5.6e+02 Score=22.35 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=37.0
Q ss_pred HHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-Ce-eEEEEEEEcCC
Q 029167 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NA-HYNSIAIIDAD 112 (198)
Q Consensus 35 ~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~-~yNs~~~i~~~ 112 (198)
.|...+++++++=|-+.. ..... .....+.|.+++++.+..+++-....+. .. +.+.++++ .+
T Consensus 414 ~al~~~p~lllLDEPt~g-LD~~~-------------~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l-~~ 478 (490)
T PRK10938 414 RALVKHPTLLILDEPLQG-LDPLN-------------RQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV-PD 478 (490)
T ss_pred HHHhcCCCEEEEcCcccc-CCHHH-------------HHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe-cC
Confidence 344557888888885432 21110 0345566777776655545554433322 23 35777778 57
Q ss_pred CCee
Q 029167 113 GSDL 116 (198)
Q Consensus 113 G~il 116 (198)
|+++
T Consensus 479 G~i~ 482 (490)
T PRK10938 479 GDIY 482 (490)
T ss_pred CceE
Confidence 8853
No 337
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=21.17 E-value=3.4e+02 Score=20.74 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il 116 (198)
...+.|.+++++.+.++++.....+. ..+.+..+++ .+|++.
T Consensus 169 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l-~~g~i~ 211 (230)
T TIGR03410 169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVM-ERGRVV 211 (230)
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 34455666665556777665544332 2344666777 478764
No 338
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=21.15 E-value=3.7e+02 Score=24.24 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCC-----ccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEG-----YYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~-----g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
..++.+.+.+...++.|++.|.++=.+.+ ||.. .++..........+-++.|.+.|.++|+.+++=..
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~----~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDV----ANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCc----ccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45666777778888889999977665533 2322 23444433333445677888888899999998444
No 339
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=21.11 E-value=2.4e+02 Score=23.57 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHhCCEEEE
Q 029167 74 PTILKMQELAKELGVVMPV 92 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~ 92 (198)
+.++.|.++++++++.+++
T Consensus 176 ~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 176 DLIKEIADIAHSAGALVYV 194 (398)
T ss_pred chHHHHHHHHHhcCCEEEE
Confidence 4568899999999999987
No 340
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=21.06 E-value=2.7e+02 Score=23.44 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=40.5
Q ss_pred HHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCC
Q 029167 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (198)
Q Consensus 35 ~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G 113 (198)
+|...+++++++=|-+.. ... .. .....+.|+++.++.++++++-+....+ -.+.+..++++ +|
T Consensus 147 RaL~~~P~llLLDEP~s~-LD~-----~~--------r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~-~G 211 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSA-LDA-----RV--------REHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN-HG 211 (353)
T ss_pred HHHhcCCCEEEEcCCccc-CCH-----HH--------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CC
Confidence 344457788888774432 110 00 0244566777777778888776555433 34556777774 78
Q ss_pred Ceeee
Q 029167 114 SDLGL 118 (198)
Q Consensus 114 ~il~~ 118 (198)
+++..
T Consensus 212 ~i~~~ 216 (353)
T TIGR03265 212 VIEQV 216 (353)
T ss_pred EEEEE
Confidence 87544
No 341
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=20.91 E-value=2.8e+02 Score=23.76 Aligned_cols=62 Identities=6% Similarity=0.133 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCccCcchhh-hHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQR-EDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 30 ~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~-~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
.+.++.|++.|+..+|+===---||...+.+ .++. ....-..++.+.++.+.+++.|+.+.+
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n-~~~~~pkrDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWN-AVDTGPKRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCc-ccCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 4456666777999888754322333333221 1111 111112378999999999999999887
No 342
>PRK14072 6-phosphofructokinase; Provisional
Probab=20.81 E-value=2e+02 Score=24.94 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=11.2
Q ss_pred CCCcEEEeCCCCC
Q 029167 39 KGANIILIQELFE 51 (198)
Q Consensus 39 ~g~dlvv~PE~~~ 51 (198)
.++|+|+.||..+
T Consensus 208 ~gad~iliPE~~~ 220 (416)
T PRK14072 208 DAPHLIYLPERPF 220 (416)
T ss_pred CCccEEEccCCCC
Confidence 6899999999754
No 343
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=20.78 E-value=2e+02 Score=22.85 Aligned_cols=34 Identities=6% Similarity=-0.004 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHHHH-hCCCcEEEeCCCCCC
Q 029167 19 TDDVSTNLATAERLVRAAH-GKGANIILIQELFEG 52 (198)
Q Consensus 19 ~~~~~~n~~~i~~~i~~A~-~~g~dlvv~PE~~~~ 52 (198)
..+.++..+.+.+.++... +.|+|+||.|=-+.+
T Consensus 39 ~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~ 73 (251)
T TIGR00067 39 EKSPEFILEYVLELLTFLKERHNIKLLVVACNTAS 73 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH
Confidence 4567888888999999998 889999999865443
No 344
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=20.62 E-value=1.2e+02 Score=24.14 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcc-hhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ-AQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 22 ~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
.++-.+.+.++.....+.++.|||.--.+.. |... ..+.+..+....+ ......|+.+|+++++++++..-
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal-fr~e~~~~~~~~~R~~~L--~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAAL-FRSEFSGRGDLAERQRML--ARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHH-HHHHSGSTTTHHHHHHHH--HHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHH-HHHHHccchhhHHHHHHH--HHHHHHHHHHHHhCCceEEeece
Confidence 3333333433333444568999999876653 2110 0001111111101 25566799999999999987533
No 345
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=20.62 E-value=3.9e+02 Score=23.97 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCCC-----ccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeee
Q 029167 24 TNLATAERLVRAAHGKGANIILIQELFEG-----YYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (198)
Q Consensus 24 ~n~~~i~~~i~~A~~~g~dlvv~PE~~~~-----g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~ 95 (198)
..+..+.+.+...++.|++.|.++=.+-+ ||... ++..........+.++.|.+.|.++|+.+++=..
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~----d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVS----DYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCcc----ccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34666667777778889999988765543 23322 3444443334456678888889999999998433
No 346
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=20.51 E-value=1.9e+02 Score=19.02 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhCCEEEEeeeec---cCCeeEEEEEEEcCCCCeee
Q 029167 74 PTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAIIDADGSDLG 117 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~g~~~~---~~~~~yNs~~~i~~~G~il~ 117 (198)
...+.=.++.+.....+.++.... ++.++.|+++++.|+|.+.+
T Consensus 57 ~~~~~~~~l~~~~~~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H 103 (109)
T PF10367_consen 57 ENLQLKYELVKLRSRSVVITESTKCSVCGKPLGNSVFVVFPCGHVVH 103 (109)
T ss_pred HHHHHHHHHHhhcCceEEECCCCCccCcCCcCCCceEEEeCCCeEEe
Confidence 334444555566677777765443 45788889999999997543
No 347
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.26 E-value=3.3e+02 Score=22.15 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHhCCEEEE
Q 029167 74 PTILKMQELAKELGVVMPV 92 (198)
Q Consensus 74 ~~~~~l~~~a~~~~i~iv~ 92 (198)
+.-+.+.+.++++++..+.
T Consensus 134 ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 134 EESDELLKAAEKHGIDPIF 152 (265)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 4446788888999887764
No 348
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=20.23 E-value=52 Score=26.89 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=19.7
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCC
Q 029167 15 QFACTDDVSTNLATAERLVRAAHGKGANIILIQE 48 (198)
Q Consensus 15 Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE 48 (198)
|++...|.+.--..+.+-++.+.+.|+|+|..|.
T Consensus 61 QF~~~eD~~~YPR~~e~D~~ll~~~gvD~vF~Ps 94 (280)
T PF02569_consen 61 QFGPNEDFDKYPRTLERDLELLEKAGVDAVFAPS 94 (280)
T ss_dssp GSSTTSHTTTS---HHHHHHHHHHTT-SEEE---
T ss_pred cCCCcchhhhCCCChHHHHHHHhccCCCEEEcCC
Confidence 5555555555556677777777788999999996
No 349
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=20.22 E-value=1.2e+02 Score=24.18 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.3
Q ss_pred HHHHHHhCCCcEEEeCCCCCC
Q 029167 32 LVRAAHGKGANIILIQELFEG 52 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~ 52 (198)
+.+...+.++|+|++.|.=+.
T Consensus 19 ~~~~l~~~~~DIiclQEtK~~ 39 (250)
T PRK13911 19 FMDFFNSVDADVFCIQESKMQ 39 (250)
T ss_pred HHHHHHhcCCCEEEEEeeccc
Confidence 455566779999999998664
No 350
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.19 E-value=3.6e+02 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhCCEEEE
Q 029167 75 TILKMQELAKELGVVMPV 92 (198)
Q Consensus 75 ~~~~l~~~a~~~~i~iv~ 92 (198)
....+.+.++++++..+.
T Consensus 117 e~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 117 EAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHHHHHcCCcEEE
Confidence 446677788888886554
No 351
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=20.17 E-value=2.3e+02 Score=24.80 Aligned_cols=54 Identities=15% Similarity=0.069 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (198)
Q Consensus 25 n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~ 92 (198)
+++.+++++++..++=|=+||=|=....|... +...+++.|+++++++|+.+++
T Consensus 186 D~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~--------------p~~~Fl~~Lr~lt~e~G~lLI~ 239 (432)
T COG0001 186 DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVP--------------PEPGFLEGLRELTEEHGALLIF 239 (432)
T ss_pred CHHHHHHHHHHcCCcEEEEEeccccCCCCCCC--------------CCHHHHHHHHHHHHHcCcEEEE
Confidence 35566666666544446678877766665431 1258899999999999999986
No 352
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.16 E-value=2.3e+02 Score=22.03 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=27.1
Q ss_pred HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee
Q 029167 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (198)
Q Consensus 32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~ 96 (198)
.+++|.+.|++++|-|= + ...+.+.++++++.++-|...
T Consensus 80 ~~~~a~~aGA~FivsP~-----~---------------------~~~v~~~~~~~~i~~iPG~~T 118 (213)
T PRK06552 80 TARLAILAGAQFIVSPS-----F---------------------NRETAKICNLYQIPYLPGCMT 118 (213)
T ss_pred HHHHHHHcCCCEEECCC-----C---------------------CHHHHHHHHHcCCCEECCcCC
Confidence 44566777888888552 1 145777788899999888654
No 353
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.09 E-value=3.3e+02 Score=19.36 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCC
Q 029167 29 AERLVRAAHGKGANIILIQELFE 51 (198)
Q Consensus 29 i~~~i~~A~~~g~dlvv~PE~~~ 51 (198)
.++.++.|.+.++|+|.+.-+..
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t 61 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYG 61 (128)
T ss_pred HHHHHHHHHHcCCCEEEEecccc
Confidence 35677888888999998855443
No 354
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=20.09 E-value=3.7e+02 Score=21.00 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=36.0
Q ss_pred HHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCC
Q 029167 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (198)
Q Consensus 36 A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~ 114 (198)
|...+++++++=|-+.. ..... .....+.|.++.++ +.++++....... ..+.+.+++++ +|+
T Consensus 152 al~~~p~llllDEP~~~-LD~~~-------------~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~-~G~ 215 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTY-LDINH-------------QVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLA-NGH 215 (255)
T ss_pred HHhcCCCEEEEcCCccc-CCHHH-------------HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEE-CCe
Confidence 44456788888775542 11000 02334555555443 6777665554432 35567788884 788
Q ss_pred eee
Q 029167 115 DLG 117 (198)
Q Consensus 115 il~ 117 (198)
+..
T Consensus 216 i~~ 218 (255)
T PRK11231 216 VMA 218 (255)
T ss_pred EEE
Confidence 653
No 355
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=20.08 E-value=1.5e+02 Score=25.43 Aligned_cols=45 Identities=7% Similarity=0.081 Sum_probs=30.1
Q ss_pred CccEEEEEeCCC--CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 029167 7 REVVVSALQFAC--TDDVSTNLATAERLVRAAHGKGANIILIQELFE 51 (198)
Q Consensus 7 ~~~~ia~~Q~~~--~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~ 51 (198)
...|+..+|=+. .+...-.+++|.+.++..++.+.|++||=-.|-
T Consensus 153 ~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCY 199 (403)
T PF06838_consen 153 PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCY 199 (403)
T ss_dssp TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TT
T ss_pred cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence 457899999888 566777788888888888888899999876554
Done!