Query 029169
Match_columns 198
No_of_seqs 23 out of 25
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 13:54:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 61.1 13 0.00046 26.6 4.7 22 86-107 16-37 (79)
2 2rdd_B UPF0092 membrane protei 52.6 14 0.00049 22.8 3.2 16 100-115 19-34 (37)
3 2k9j_B Integrin beta-3; transm 49.1 29 0.001 22.3 4.4 26 150-175 8-38 (43)
4 2rdd_B UPF0092 membrane protei 47.7 21 0.00072 22.0 3.4 24 93-116 9-32 (37)
5 2ks1_B Epidermal growth factor 46.5 7.1 0.00024 25.7 1.1 22 90-111 20-41 (44)
6 2l2t_A Receptor tyrosine-prote 34.9 13 0.00043 24.6 0.9 10 102-111 31-40 (44)
7 2knc_B Integrin beta-3; transm 34.6 41 0.0014 24.0 3.7 27 147-174 7-38 (79)
8 2i68_A Protein EMRE; transmemb 28.1 27 0.00092 26.8 1.9 49 79-133 80-128 (137)
9 3h1n_A Probable glutathione S- 25.9 19 0.00065 28.0 0.7 34 23-56 14-49 (252)
10 2wwx_B DRRA, SIDM; golgi appar 25.5 1.3E+02 0.0044 25.1 5.7 55 87-159 39-98 (217)
11 2k1k_A Ephrin type-A receptor 21.8 48 0.0017 20.9 1.9 10 92-101 25-34 (38)
12 2dw3_A Intrinsic membrane prot 21.7 99 0.0034 22.7 3.8 34 150-185 23-56 (77)
13 2knc_A Integrin alpha-IIB; tra 21.3 1.6E+02 0.0056 20.0 4.6 34 147-185 8-46 (54)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.15 E-value=13 Score=26.58 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 029169 86 QVATSVLLTGAISVFLFRALRR 107 (198)
Q Consensus 86 QvA~svllTGaisvFlfRslrR 107 (198)
=+.+|+++.|++.+++.|.+..
T Consensus 16 gvi~gilliGllllliwk~~~~ 37 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLIT 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788899999888887743
No 2
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=52.60 E-value=14 Score=22.81 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhh
Q 029169 100 FLFRALRRRAKRAKEL 115 (198)
Q Consensus 100 FlfRslrRRakrAKE~ 115 (198)
++.|-=|||.|+.+|.
T Consensus 19 l~iRPQ~Kr~K~~~~m 34 (37)
T 2rdd_B 19 MILRPQQKRTKEHKKL 34 (37)
T ss_dssp HTHHHHHHHHHHHTTG
T ss_pred HHhhhHHHHHHHHHHH
Confidence 3456666666666553
No 3
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=49.12 E-value=29 Score=22.34 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHH-----HHHHHHHHHhhhhh
Q 029169 150 PVQALLGGLTAG-----VIAIILYKFTTTIE 175 (198)
Q Consensus 150 p~QaflGai~Ag-----vIA~iLYkFtTtVe 175 (198)
+.-+.+||+.|| .+.+.+||+-+++.
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~ 38 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLLITIH 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 455555666664 45567799988874
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=47.71 E-value=21 Score=22.04 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 029169 93 LTGAISVFLFRALRRRAKRAKELK 116 (198)
Q Consensus 93 lTGaisvFlfRslrRRakrAKE~R 116 (198)
+..++++|.|=..|-.-||+||.+
T Consensus 9 ~v~~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 9 LVVFGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444557788999999999999954
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=46.45 E-value=7.1 Score=25.71 Aligned_cols=22 Identities=23% Similarity=0.171 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029169 90 SVLLTGAISVFLFRALRRRAKR 111 (198)
Q Consensus 90 svllTGaisvFlfRslrRRakr 111 (198)
|+++..++....+=.+|||.++
T Consensus 20 Gv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 20 ALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHhhhhHhh
Confidence 3444334444444455665544
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=34.86 E-value=13 Score=24.63 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 029169 102 FRALRRRAKR 111 (198)
Q Consensus 102 fRslrRRakr 111 (198)
+=.+|||-++
T Consensus 31 ~~~~RRRr~~ 40 (44)
T 2l2t_A 31 AVYVRRKSIK 40 (44)
T ss_dssp HHHHHTTCSS
T ss_pred HHHhhhhhhh
Confidence 3345555443
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.56 E-value=41 Score=24.02 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=15.6
Q ss_pred CCChHHHHHHHHHHH-----HHHHHHHHHhhhh
Q 029169 147 PPSPVQALLGGLTAG-----VIAIILYKFTTTI 174 (198)
Q Consensus 147 ~pSp~QaflGai~Ag-----vIA~iLYkFtTtV 174 (198)
++... +.+||+.|| .+.+++||+-+.|
T Consensus 7 ~~n~~-~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 7 GPDIL-VVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp SSCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 444555554 4455669988777
No 8
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=28.15 E-value=27 Score=26.76 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=10.1
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCchHHHHHH
Q 029169 79 TDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDN 133 (198)
Q Consensus 79 ~de~spLQvA~svllTGaisvFlfRslrRRakrAKE~R~rSsg~~kslkEEa~e~ 133 (198)
.|..|+.|.++.++. .++|++.....+.. +.+-.-.-.+|-+.|||+.+
T Consensus 80 gE~ls~~~~~Gi~LI--i~GV~ll~~~~~~~----~~~~~~~v~~~~~~~~~~~~ 128 (137)
T 2i68_A 80 GQRLDLPAIIGMMLI--CAGVLIINLLSRST----PHEFEAYVEQKLISEEDLNS 128 (137)
T ss_dssp C------CHHHHHHH--HHHHHHHHHC----------------------------
T ss_pred CCCCCHHHHHHHHHH--HHHHHHHhcCCCCC----CCCcccchhhhhcCHHHhhh
Confidence 456688887776653 33455554322111 11111111257788887764
No 9
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}
Probab=25.93 E-value=19 Score=27.96 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=25.4
Q ss_pred CCCCcCCcceeeecc--CCCCCcchhhhhhccCCCc
Q 029169 23 LNFLQKPTISLSAFP--RRRPLIEPYCLAQAQEPTT 56 (198)
Q Consensus 23 ~~~~~~p~~~~sa~~--~~~~~~~~~~~~~aq~~~~ 56 (198)
-+..+.+++++.-+| +.+-....|+|....++=.
T Consensus 14 ~~~~~~m~~~L~y~~g~~~~a~~vr~~L~~~gi~ye 49 (252)
T 3h1n_A 14 NLYFQGMAYDLWYWDGIPGRGEFVRLALEAGKIPYR 49 (252)
T ss_dssp CCGGGGGCEEEECCSSSCTTHHHHHHHHHHHTCCEE
T ss_pred ceeecCCceEEEeCCCCCcchHHHHHHHHhCCCCce
Confidence 356788888998888 5555566799998888743
No 10
>2wwx_B DRRA, SIDM; golgi apparatus, protein transport, ER-golgi transport, endoplasmic reticulum, prenylation, lipoprotein, nucleotide-binding; 1.50A {Legionella pneumophila} PDB: 3jz9_A 3jza_B
Probab=25.54 E-value=1.3e+02 Score=25.15 Aligned_cols=55 Identities=36% Similarity=0.387 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhhCCCCCCCCCCCCh-----HHHHHHHHH
Q 029169 87 VATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSP-----VQALLGGLT 159 (198)
Q Consensus 87 vA~svllTGaisvFlfRslrRRakrAKE~R~rSsg~~kslkEEa~e~lka~~~a~~~a~k~pSp-----~QaflGai~ 159 (198)
+|-|.+=-|-|+-||- .-..--|.-|| |++||++++ |..+.|..|| +|++||+..
T Consensus 39 nansmlekgnisgylk-aanelhkfmke---------knlkeddlr--------pelsdktispkgyailqslwgaas 98 (217)
T 2wwx_B 39 NANSMLEKGNISGYLK-AANELHKFMKE---------KNLKEDDLR--------PELSDKTISPKGYAILQSLWGAAS 98 (217)
T ss_dssp HHHHHHHTTCHHHHHH-HHHHHHHHHHH---------TTCCHHHHG--------GGGTTCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHccChHHHHH-HHHHHHHHHHh---------ccCcccccC--------cccccCccCcchHHHHHHHHhhhh
Confidence 5667777777777652 11122233333 789998775 3445567777 699999865
No 11
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.79 E-value=48 Score=20.87 Aligned_cols=10 Identities=40% Similarity=0.258 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 029169 92 LLTGAISVFL 101 (198)
Q Consensus 92 llTGaisvFl 101 (198)
++..++.+|+
T Consensus 25 ~li~~l~~~~ 34 (38)
T 2k1k_A 25 ALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 12
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=21.70 E-value=99 Score=22.72 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccCC
Q 029169 150 PVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISD 185 (198)
Q Consensus 150 p~QaflGai~AgvIA~iLYkFtTtVeASf~rQtlpD 185 (198)
..|-+.||..|+|..+++|.+-... .+=||.|||
T Consensus 23 ~~qMlkGAg~AAv~f~~~~~~lv~l--~~iG~~LPE 56 (77)
T 2dw3_A 23 AFQMMKGAGWAGGVFFGTLLLIGFF--RVVGRMLPI 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCTTT
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHH--HHHHHhCch
Confidence 3688999999999999999886554 455666665
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.26 E-value=1.6e+02 Score=19.95 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCChHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhcccccCC
Q 029169 147 PPSPVQALLGGLTAGV-----IAIILYKFTTTIEAALNRQTISD 185 (198)
Q Consensus 147 ~pSp~QaflGai~Agv-----IA~iLYkFtTtVeASf~rQtlpD 185 (198)
...|.=-.++++.+|. |.++|||+ +-|.|+.-|+
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~-----GFFkR~~~~~ 46 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKV-----GFFKRNRPPL 46 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTTTTCCSC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHc-----CcccCCCCCc
Confidence 3456666666666664 56889998 4788877554
Done!