Query 029169
Match_columns 198
No_of_seqs 23 out of 25
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 13:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 42.7 11 0.00079 26.8 3.6 29 83-111 62-90 (109)
2 d1yova1 c.111.1.2 (A:6-534) Am 28.3 23 0.0017 30.2 3.9 30 125-160 468-497 (529)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 27.6 57 0.0042 26.4 6.2 44 127-170 26-78 (472)
4 d1qwia_ d.227.1.1 (A:) Osmotic 22.3 35 0.0025 23.4 3.3 23 146-168 43-65 (142)
5 d1lqla_ d.227.1.1 (A:) Hypothe 22.2 65 0.0048 21.8 4.8 23 146-168 37-59 (141)
6 d1ml8a_ d.227.1.2 (A:) Hypothe 20.8 48 0.0035 22.1 3.7 24 146-169 32-55 (134)
7 d1uspa_ d.227.1.1 (A:) Organic 18.8 51 0.0037 21.8 3.5 23 146-168 40-62 (137)
8 d1vlaa_ d.227.1.2 (A:) Hypothe 16.9 55 0.004 21.9 3.3 22 146-167 40-61 (144)
9 d2pn2a1 d.227.1.1 (A:1-132) Un 15.3 65 0.0047 21.3 3.3 22 146-167 38-59 (132)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 14.5 1.3E+02 0.0095 18.7 4.6 23 92-114 9-31 (86)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=42.71 E-value=11 Score=26.78 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=18.6
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 029169 83 SSLQVATSVLLTGAISVFLFRALRRRAKR 111 (198)
Q Consensus 83 spLQvA~svllTGaisvFlfRslrRRakr 111 (198)
+-+|....++.++++.+|++-.--.|.||
T Consensus 62 ~fi~a~InFlIiA~vv~F~vvk~~n~~~~ 90 (109)
T d2oara1 62 VLLSAAINFFLIAFAVYFLVVLPYNTLRK 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35888888888888766655333344444
No 2
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.30 E-value=23 Score=30.15 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=19.7
Q ss_pred CchHHHHHHHHhhCCCCCCCCCCCChHHHHHHHHHH
Q 029169 125 SLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTA 160 (198)
Q Consensus 125 slkEEa~e~lka~~~a~~~a~k~pSp~QaflGai~A 160 (198)
.++|+..+++.+.+ .....|+.||+||+.|
T Consensus 468 ~~~~~~i~e~~r~~------~~el~~vaA~~GGiaa 497 (529)
T d1yova1 468 MVKDDYVHEFCRYG------AAEPHTIAAFLGGAAA 497 (529)
T ss_dssp CCCHHHHHHHHHTT------TCCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHc------CCcccHHHHHHHHHHH
Confidence 34445545443332 2578899999999987
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=27.62 E-value=57 Score=26.41 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCChHHHHHHH---------HHHHHHHHHHHHH
Q 029169 127 KDEALDNLKALGSSSIDAKGPPSPVQALLGG---------LTAGVIAIILYKF 170 (198)
Q Consensus 127 kEEa~e~lka~~~a~~~a~k~pSp~QaflGa---------i~AgvIA~iLYkF 170 (198)
.+|+.+.+++-+.+..+.+++.|..+-|+.. +.|+++++++..+
T Consensus 26 ~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~ 78 (472)
T d1wpga4 26 PDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWF 78 (472)
T ss_dssp HHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888877764 3455666666543
No 4
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=22.31 E-value=35 Score=23.37 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=18.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH
Q 029169 146 GPPSPVQALLGGLTAGVIAIILY 168 (198)
Q Consensus 146 k~pSp~QaflGai~AgvIA~iLY 168 (198)
+-|||+|.|++|+.+-....+.+
T Consensus 43 ~G~~P~elllaAlasC~~~~~~~ 65 (142)
T d1qwia_ 43 KGTNPEELIGAAHAACFSMALSL 65 (142)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 56999999999998876555544
No 5
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=22.22 E-value=65 Score=21.83 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=17.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH
Q 029169 146 GPPSPVQALLGGLTAGVIAIILY 168 (198)
Q Consensus 146 k~pSp~QaflGai~AgvIA~iLY 168 (198)
+-+||++.|++|+.|-....+.+
T Consensus 37 ~G~~P~elllaaLa~C~~~~~~~ 59 (141)
T d1lqla_ 37 KGFGPLAALLSGLAACELATANL 59 (141)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHH
Confidence 45999999999998776554443
No 6
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=20.80 E-value=48 Score=22.11 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=18.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Q 029169 146 GPPSPVQALLGGLTAGVIAIILYK 169 (198)
Q Consensus 146 k~pSp~QaflGai~AgvIA~iLYk 169 (198)
.-|+|++.|++|+.+-....+.+.
T Consensus 32 ~gp~P~elllaal~~C~~~~~~~~ 55 (134)
T d1ml8a_ 32 KAPSPMEMVLMAAGGCSAIDVVSI 55 (134)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Confidence 568999999999988766655543
No 7
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=18.76 E-value=51 Score=21.84 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=17.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH
Q 029169 146 GPPSPVQALLGGLTAGVIAIILY 168 (198)
Q Consensus 146 k~pSp~QaflGai~AgvIA~iLY 168 (198)
.-++|+|-|++|+.+-.+..+.+
T Consensus 40 ~g~~P~elllaAlasC~~~t~~~ 62 (137)
T d1uspa_ 40 PGTNPEQLFAAGYAACFQGALGV 62 (137)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 45899999999998876544443
No 8
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=16.87 E-value=55 Score=21.90 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=16.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHH
Q 029169 146 GPPSPVQALLGGLTAGVIAIIL 167 (198)
Q Consensus 146 k~pSp~QaflGai~AgvIA~iL 167 (198)
.-|||+|-|++|+.+-....+.
T Consensus 40 ~g~~P~elllaala~C~~~~~~ 61 (144)
T d1vlaa_ 40 AAPRPLELVLTGLMGCTGMDVV 61 (144)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHH
Confidence 5699999999999887644433
No 9
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=15.28 E-value=65 Score=21.26 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=17.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHH
Q 029169 146 GPPSPVQALLGGLTAGVIAIIL 167 (198)
Q Consensus 146 k~pSp~QaflGai~AgvIA~iL 167 (198)
.-+||+|-|++|+.+-....+.
T Consensus 38 ~g~~P~eLllaala~C~~~~~~ 59 (132)
T d2pn2a1 38 EAFSPTDLLATSLASCMLTIIG 59 (132)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 5799999999999877555443
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=14.54 E-value=1.3e+02 Score=18.67 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 029169 92 LLTGAISVFLFRALRRRAKRAKE 114 (198)
Q Consensus 92 llTGaisvFlfRslrRRakrAKE 114 (198)
++.-.++|++.|.++|..+|.-+
T Consensus 9 l~il~i~~~i~~~i~~~~~~~~~ 31 (86)
T d2vv5a3 9 LAIIIVGLIIARMISNAVNRLMI 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999988877655
Done!