BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029170
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/181 (66%), Positives = 140/181 (77%), Gaps = 2/181 (1%)
Query: 1 MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
M I D + S KK LF CPFWQ +T + SS+ + QN + N + + S+P
Sbjct: 1 MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60
Query: 60 TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61 L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119
Query: 120 SCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPE 179
SCYMRPPGGVLAPG+S+ ATVFKFVE PENNE+QPL+QKSK KFKIMSLKVK G++YVPE
Sbjct: 120 SCYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPE 179
Query: 180 L 180
L
Sbjct: 180 L 180
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 108/119 (90%), Gaps = 1/119 (0%)
Query: 62 TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
+VS VA+S LP +RRL+LDPS LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTTAPKSC
Sbjct: 93 SVSSVAKSFLPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSC 152
Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
+MRPPG +LAPG++IIATVFKFVE PENNE+ P+DQ+S+ KFKIMSLKVKG +DYVPEL
Sbjct: 153 FMRPPGAILAPGETIIATVFKFVEPPENNEK-PMDQRSRVKFKIMSLKVKGPMDYVPEL 210
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 183 bits (465), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 103/119 (86%), Gaps = 1/119 (0%)
Query: 62 TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
++S VARSLLP +RRL+LDPS LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC
Sbjct: 85 SMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSC 144
Query: 122 YMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPEL 180
+MRP G +LAPG+ IIATVFKFVE PENNE+ P++QKS KFKIMSLK+K DY+PEL
Sbjct: 145 FMRPAGAILAPGEEIIATVFKFVEPPENNEK-PMEQKSGVKFKIMSLKMKVPTDYMPEL 202
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 84 NLYFPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142
L FP+E KQ+ +++L N T+ VAFK +TT P+ +RP GV+ PGDS TV
Sbjct: 13 ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTV-- 70
Query: 143 FVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173
+ + PLD + KDKF + ++ V G
Sbjct: 71 ---TMQAQKEAPLDMQCKDKFLVQTVVVSDG 98
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 83 NNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142
+ L F +E KQ+ +++ N ++++VAFK +TT+PK ++RP GV+ P DS I V
Sbjct: 15 DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV-- 72
Query: 143 FVEAPENNERQPLDQKSKDKFKIMSLKV--KGGIDYVPE 179
+ P D + KDKF + S V +D +P+
Sbjct: 73 ---TLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQ 108
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS- 135
L +DP + L FP+E KQ ++ L N + ++VAFK +TT PK +RP GV+ P S
Sbjct: 6 LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64
Query: 136 -IIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELVSH 183
++ T+ EA P D + KDKF + + G P+ V+H
Sbjct: 65 EVLVTMQAQKEA-------PADLQCKDKFLLQCVVASPGA--TPKDVTH 104
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 84 NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS--IIATVF 141
+L FP+E KQ ++ L N + ++VAFK +TT PK +RP GV+ P + ++ T+
Sbjct: 29 DLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRSTCEVLVTMQ 88
Query: 142 KFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI---DYVPELVS 182
EAP D + KDKF + + G+ + PE+ S
Sbjct: 89 AQKEAPS-------DMQCKDKFLLQGVIASPGVTAKEVTPEMFS 125
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 85 LYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD----SIIATV 140
L F + KQT V+L NT+ +VAFK +TT+PK +RP GV+AP ++I
Sbjct: 13 LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVIMQA 72
Query: 141 FKFVEAPENNERQPLDQKSKDKFKIMSLKV 170
FK P D KDKF I S V
Sbjct: 73 FK---------EPPPDMVCKDKFLIQSTAV 93
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 29 ATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFP 88
++PS+S S N + P VG+ + R + + L +DP + + FP
Sbjct: 143 SSPSASVSDKGNASEVFVGPSVGIVDLIRMSDEL--------------LIIDPVD-VQFP 187
Query: 89 YEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPE 148
E K+ ++ L N ++++VAFK +TT K Y+RP GV+ P S V ++A
Sbjct: 188 IELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSS--CEVLVIMQAL- 244
Query: 149 NNERQPLDQKSKDKF 163
+ P D + +DK
Sbjct: 245 --KEAPADMQCRDKL 257
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 84 NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143
++ FP E KQ ++ L N + ++VAFK QTT PK ++P GV+ P S V
Sbjct: 13 DIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSS--CEVLVV 70
Query: 144 VEAPENNERQPLDQKSKDKF 163
++A + P D++ KDK
Sbjct: 71 MQAL---KEAPADRQCKDKL 87
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L LDP +L F + ++L+N S V FK +TTAP+ +RP G++ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + ++
Sbjct: 75 TVSVM----------LQPFDYDPNEKSKHKFMVQTI 100
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L LDP +L F + ++L+N S V FK +TTAP+ +RP G++ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + ++
Sbjct: 75 TVSVM----------LQPFDYDPNEKSKHKFMVQTI 100
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L LDP +L F + ++L+N S V FK +TTAP+ +RP G++ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTV 74
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + ++
Sbjct: 75 TVSVM----------LQPFDYDPNEKSKHKFMVQTI 100
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L LDP ++L F + ++L+N S V FK +TTAP+ +RP GV+ PG +
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIV 74
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + ++
Sbjct: 75 TVSVM----------LQPFDYDPNEKSKHKFMVQTI 100
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L LDP ++L F + ++L+N S V FK +TTAP+ +RP G++ PG +
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIV 74
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + ++
Sbjct: 75 TVSVM----------LQPFDYDPNEKSKHKFMVQTI 100
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS22 PE=1 SV=2
Length = 175
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
+R+ P L F KQ+ ++L+N + V FK +T+AP +RP ++ +S+
Sbjct: 1 MRIVPEK-LVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESV 59
Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKV 170
+ F+ P++ +DQK +DKF I++L +
Sbjct: 60 NVQIV-FLGLPKSTADDEMDQK-RDKFLIVTLPI 91
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 93 KQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI-IATVFKFVEAPENNE 151
+Q+ + N S +AFK +TTAPK +RP V+APG++I + +F + E
Sbjct: 19 EQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVIFLGL-----TE 73
Query: 152 RQPLDQKSKDKFKIMSL 168
D K +DKF +++L
Sbjct: 74 EPAADFKCRDKFLVITL 90
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 16/101 (15%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
+ L+ + + FP + + + L+NT+ + FK +TTAPK +RP GG + ++
Sbjct: 1 MALECDSTIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAV 60
Query: 137 IATVFKFVEAPENNERQPLDQ------KSKDKFKIMSLKVK 171
V QPLD K +DKF + S ++K
Sbjct: 61 SVEVI----------LQPLDHEPAPGTKCRDKFLVQSTELK 91
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L ++P L FP+E KQ ++ L N + ++VAFK +TT + +RP G++ P +
Sbjct: 7 LEIEPMY-LQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKSTC 65
Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI 174
K + + + P D +S +KF I S+ G+
Sbjct: 66 -----KVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGV 98
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L + P+ LYF + ++ + L N +K+ VAFK +TTAP+ ++P PG S+
Sbjct: 328 LHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASV 387
Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVK 171
V +P L ++D+F IM+ +++
Sbjct: 388 DIVV-----SPHGG----LTVSAQDRFLIMAAEME 413
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L + P+ LYF + ++ + L N +K+ VAFK +TTAP+ ++P PG SI
Sbjct: 328 LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 387
Query: 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVK 171
V +P L ++D+F IM+ +++
Sbjct: 388 DIIV-----SPHGG----LTVSAQDRFLIMAAEME 413
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TTAP+ +RP G++ G SI
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + S+
Sbjct: 68 NVSVM----------LQPFDYDPNEKSKHKFMVQSM 93
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TTAP+ +RP G++ G SI
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + S+
Sbjct: 68 NVSVM----------LQPFDYDPNEKSKHKFMVQSM 93
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TTAP+ +RP G++ G SI
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + S+
Sbjct: 68 NVSVM----------LQPFDYDPNEKSKHKFMVQSM 93
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TTAP+ +RP GV+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASL 67
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + S+
Sbjct: 68 NVSVM----------LQPFDYDPNEKSKHKFMVQSM 93
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P+ L F + ++L N + + FK +TTAPK +RP G+L P SI
Sbjct: 8 LILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSI 67
Query: 137 IATVFKFVEAPENNERQPL----DQKSKDKFKIMSL 168
V QP ++K+K KF + S+
Sbjct: 68 AVAVM----------LQPFNYDPNEKNKHKFMVQSM 93
>sp|P53022|MSP2_GLORO Major sperm protein 2 OS=Globodera rostochiensis GN=MSP-2 PE=2 SV=2
Length = 126
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
VR+ N + + F F+TT PK M PP GVL P +S+
Sbjct: 31 VRVINPGTNRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53023|MSP3_GLORO Major sperm protein 3 OS=Globodera rostochiensis GN=MSP-3 PE=2 SV=2
Length = 126
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
VR+ N + F F+TT PK M PP GVL P +S+
Sbjct: 31 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53021|MSP1_GLORO Major sperm protein 1 OS=Globodera rostochiensis GN=MSP-1 PE=2 SV=2
Length = 126
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
VR+ N + F F+TT PK M PP GVL P +S+
Sbjct: 31 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TT P+ +RP GV+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASL 67
Query: 137 IATVFKFVEAPENNERQPLD----QKSKDKFKIMSL 168
+V QP D +KSK KF + S+
Sbjct: 68 NVSVM----------LQPFDYDPNEKSKHKFMVQSM 93
>sp|Q21244|MSP63_CAEEL Major sperm protein 63 OS=Caenorhabditis elegans GN=msp-63 PE=2
SV=3
Length = 127
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 77 LRLDPSNNLYF--PYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD 134
++ P + F PY+ R +++ N+S + + +TT K + PP GVL P +
Sbjct: 10 IQTQPGTKIVFNAPYDDKHTYR--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKE 67
Query: 135 SIIATV----FKFVEAPENNER 152
+++ V F F + NN+R
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 77 LRLDPSNNLYFPYEP-GKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
+ ++ S L+F Y P ++ + + N + V FK +TTAPK +RP G + P +
Sbjct: 1 MSVECSGELFF-YPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKST 59
Query: 136 IIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKV 170
+ V ++A + E D K +DKF I S+ +
Sbjct: 60 VNVQV--LLQAMK--EEPAPDFKCRDKFLIQSMAI 90
>sp|Q94053|MSP78_CAEEL Major sperm protein 78 OS=Caenorhabditis elegans GN=msp-78 PE=2
SV=3
Length = 127
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P ++++ V F F + NN+R
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142
OS=Caenorhabditis elegans GN=msp-19 PE=1 SV=2
Length = 127
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P ++++ V F F + NN+R
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q23519|MS152_CAEEL Major sperm protein 152 OS=Caenorhabditis elegans GN=msp-152 PE=2
SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P ++++ V F F + NN+R
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q9TVW5|MSP77_CAEEL Major sperm protein 77/79 OS=Caenorhabditis elegans GN=msp-77 PE=2
SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P ++++ V F F + NN+R
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q19832|MSP3_CAEEL Major sperm protein 3 OS=Caenorhabditis elegans GN=msp-3 PE=2 SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P ++++ V F F + NN+R
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 OS=Caenorhabditis elegans GN=msp-10
PE=2 SV=4
Length = 127
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P ++++ V F F + NN+R
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q8CBY1|SMAG1_MOUSE Protein Smaug homolog 1 OS=Mus musculus GN=Samd4a PE=1 SV=2
Length = 711
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 6 WHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGV-PNSSRPAT-KTV 63
+H R NSD KL G WQ S + SAS+ Q+ + N HV + +SS PAT T+
Sbjct: 177 YHQRQNSDDKLNG----WQNSRDSGICISASNWQDKSLGCENGHVPLYSSSSVPATINTI 232
Query: 64 SYVARSLL-------PPRRRLRLDPSNNLYFPYEP 91
A ++L P +R + L P N+ P +P
Sbjct: 233 GTGASTILSGQAHHSPLKRSVSLTPPMNV--PNQP 265
>sp|Q9UTD0|FOLD_SCHPO Probable folylpolyglutamate synthase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=fol3 PE=3 SV=1
Length = 417
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 23/138 (16%)
Query: 21 PFWQTSTTATPSSSASSTQNLTTSSSN------------PHV--GVPNSSRPATKTVSYV 66
P W T+T +TP QNL + + PHV GV N+S P + V
Sbjct: 221 PNWGTNTFSTPLKGDYQGQNLACAVTALDILSSSFSIMLPHVQNGVKNTSWPGRLDIRSV 280
Query: 67 ARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPP 126
P + D ++N E K S R N S S V F T + M+
Sbjct: 281 -----PSLGDILFDGAHNKEAAIELAKFVNSQRREHNKSVSWVV-AFTNTKDVTGIMKI- 333
Query: 127 GGVLAPGDSIIATVFKFV 144
+L GD++IAT F V
Sbjct: 334 --LLRKGDTVIATNFSSV 349
>sp|Q17856|MSP55_CAEEL Major sperm protein 55/57 OS=Caenorhabditis elegans GN=msp-55 PE=2
SV=3
Length = 127
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P ++++ V F F + NN+R
Sbjct: 32 IKVINSSARRIVYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53018|MSP32_CAEEL Major sperm protein 32 OS=Caenorhabditis elegans GN=msp-32 PE=2
SV=1
Length = 190
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P ++++ V F F + NN+R
Sbjct: 95 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 152
>sp|P53019|MSP33_CAEEL Major sperm protein 33 OS=Caenorhabditis elegans GN=msp-33 PE=2
SV=2
Length = 127
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +TT K + PP GVL P +++ V F F + NN+R
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVFLAVSCDAFAFGQEDTNNDR 89
>sp|P53020|MSP38_CAEEL Major sperm protein 38 OS=Caenorhabditis elegans GN=msp-38 PE=2
SV=2
Length = 127
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 77 LRLDPSNNLYF--PYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD 134
++ P + F PY+ + +++ N+S + + +TT K + PP GV P +
Sbjct: 10 IQTQPGTKIVFNAPYD--DKHTDHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVFDPKE 67
Query: 135 SIIATV----FKFVEAPENNER 152
+++ V F F + NN+R
Sbjct: 68 AVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q0P5G1|TONSL_BOVIN Tonsoku-like protein OS=Bos taurus GN=TONSL PE=2 SV=1
Length = 1374
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 21 PFWQTSTTATPSSSASSTQNLTTSSSN-PHVGVPNSSRPATKTVSYVARSLLPPRRRLRL 79
P+ ++ +T + A+S S + P V P P T ++ +LPP R+R+
Sbjct: 878 PYLESWSTPVRADRANSQATEPARSPDVPRVVAPTGENPTT---GHLPGQVLPPPIRVRV 934
Query: 80 DPSNNLYFPYEPGKQTRSAVRL-KNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
+NL+ P ++ S L + ++ H ++ P+ ++ G +LAP D I
Sbjct: 935 RVQDNLFLIPVPHREAHSVAWLAEQAAQRH--YQASGLLPR-LSLQKEGALLAPQDPI 989
>sp|Q18461|MSP49_CAEEL Major sperm protein 49 OS=Caenorhabditis elegans GN=msp-49 PE=2
SV=3
Length = 127
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV----FKFVEAPENNER 152
+++ N+S + + +T K + PP GVL P ++++ V F F + NN+R
Sbjct: 32 IKVINSSARRIGYGIKTINMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q95LV5|SMAG1_MACFA Protein Smaug homolog 1 OS=Macaca fascicularis GN=SAMD4A PE=2 SV=2
Length = 718
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 6 WHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSS 56
+H R NSD KL G WQ S + +AS+ Q+ + N HV + +SS
Sbjct: 177 YHQRQNSDDKLNG----WQNSRDSGICINASNWQDKSMGCENGHVPLYSSS 223
>sp|Q9UPU9|SMAG1_HUMAN Protein Smaug homolog 1 OS=Homo sapiens GN=SAMD4A PE=1 SV=3
Length = 718
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 6 WHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSS 56
+H R NSD KL G WQ S + +AS+ Q+ + N HV + +SS
Sbjct: 177 YHQRQNSDDKLNG----WQNSRDSGICINASNWQDKSMGCENGHVPLYSSS 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,187,315
Number of Sequences: 539616
Number of extensions: 2927348
Number of successful extensions: 14227
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 13669
Number of HSP's gapped (non-prelim): 497
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)