BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029172
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis
thaliana GN=At1g12250 PE=1 SV=1
Length = 280
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 125/176 (71%), Gaps = 8/176 (4%)
Query: 1 MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--- 57
MA SS+SPL +KSL+ SSS + + L Q+SS+ S+ + D SN +
Sbjct: 1 MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSR--SNLEIKDSSNTREGC 58
Query: 58 CAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSAD 117
C+ A+ W+ +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSAD
Sbjct: 59 CSS--AESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSAD 115
Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLL 173
L K VH ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+ ++ L+
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLM 171
>sp|P05530|MCBG_ECOLX Protein McbG OS=Escherichia coli GN=mcbG PE=4 SV=1
Length = 187
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDE 167
F S L+K++ + FR F D+R+SDF+GS+FN + +F++ E
Sbjct: 97 VDFISLRLQKSIFLSCRFRDCLFEETDLRKSDFTGSEFNNTEFRHSDLSHCDFSMTE 153
>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=spkB PE=1 SV=1
Length = 574
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 71 FVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR 130
V LA A V + + L + N +AE + A FG A L+ + N
Sbjct: 456 LVGIVLAKAFVPGINCYQANLTNANFEQAEL-------TRADFGKARLKNVIFKGANLSD 508
Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 164
A F AD+R +D G+ NG + A ANF+
Sbjct: 509 AYFGYADLRGADLRGANLNGVNFKYANLQGANFS 542
>sp|P85304|TL18_SPIOL Thylakoid lumenal 18.3 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 18
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 93 DLNKYEAETRGEFGIGSA 110
DLNK+EAE RGEFGI SA
Sbjct: 1 DLNKFEAEMRGEFGIXSA 18
>sp|P73063|Y1851_SYNY3 Uncharacterized protein slr1851 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1851 PE=4 SV=1
Length = 162
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 109 SAAQFGSADLRKAVHVKE------NFRRANFTSADMRESDFSGSKFNGAYL-EKAVAYKA 161
S A+ G ADLRKA ++ E + R N A++ +DFS + GAY+ + AV
Sbjct: 101 SGAKLGGADLRKA-NLSEASLRGADLRGVNLIEANLTNTDFSEADLTGAYISDGAVINVV 159
Query: 162 NFT 164
N +
Sbjct: 160 NLS 162
>sp|P37497|YYBG_BACSU Uncharacterized protein YybG OS=Bacillus subtilis (strain 168)
GN=yybG PE=4 SV=1
Length = 279
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA-YLEKAVAYKANFTVDEICLPLL 173
+ADLR A + R +F ADMR++D SG+ G+ +L +A AN + LPL
Sbjct: 218 AADLRNA-----DLRMTDFIGADMRDADLSGADLTGSIFLTQAQVNAANGDSN-TKLPLS 271
Query: 174 VSLP 177
V P
Sbjct: 272 VRTP 275
>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4
SV=1
Length = 295
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYL 153
S A +ADL++A N AN T+ D++ +D S + GA L
Sbjct: 230 SNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANL 274
>sp|Q9W0P5|GALE_DROME Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=Gale
PE=2 SV=1
Length = 350
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 80 VVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMR 139
+V ++ AL L + +G+ + D+ KA K + ++ N+T D R
Sbjct: 245 IVDLAEGHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFE-KASGKKVNYTLVDRR 303
Query: 140 ESDFSGSKFNGAYLEKAVAYKANFTVDEIC 169
D + + +K + +KA +D++C
Sbjct: 304 SGDVATCYADATLADKKLGWKAERGIDKMC 333
>sp|P73709|Y1819_SYNY3 Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1819 PE=4 SV=1
Length = 331
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 25/95 (26%)
Query: 100 ETRGEFGIGSAAQFGSADLR----KAVHVKE------NFRRANFTSADMRESDFS----- 144
E +G + AA G ADL+ K V + N + AN D+R++D S
Sbjct: 140 EKKGYYTNLQAAILGRADLQGANMKGVDLSRADLSYANLKEANLRDVDLRKADLSYANLK 199
Query: 145 ----------GSKFNGAYLEKAVAYKANFTVDEIC 169
G+K NGA L+ A +A + E+
Sbjct: 200 GALLTDANLSGAKLNGADLQNANLMRAKISEAEMT 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,162,015
Number of Sequences: 539616
Number of extensions: 2601979
Number of successful extensions: 5333
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5280
Number of HSP's gapped (non-prelim): 45
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)