Query 029172
Match_columns 198
No_of_seqs 232 out of 1264
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15197 secreted effector pro 99.4 4.3E-13 9.4E-18 119.0 4.0 34 159-192 242-276 (291)
2 PF13599 Pentapeptide_4: Penta 99.3 3.5E-12 7.5E-17 89.7 4.5 72 111-183 6-78 (78)
3 PRK15377 E3 ubiquitin-protein 99.2 7.6E-12 1.7E-16 122.0 4.8 53 133-185 223-275 (782)
4 PRK15377 E3 ubiquitin-protein 99.2 9.1E-12 2E-16 121.4 5.1 20 114-133 193-212 (782)
5 KOG1665 AFH1-interacting prote 99.2 5.2E-12 1.1E-16 108.8 1.3 74 111-184 216-289 (302)
6 PF13599 Pentapeptide_4: Penta 99.1 2.4E-11 5.2E-16 85.4 2.9 67 117-183 2-69 (78)
7 PRK09718 hypothetical protein; 99.1 1.4E-10 3.1E-15 108.6 4.8 81 109-189 158-241 (512)
8 KOG1665 AFH1-interacting prote 99.0 1.1E-10 2.4E-15 100.7 2.9 71 116-186 216-286 (302)
9 PRK09718 hypothetical protein; 98.8 3.2E-09 7E-14 99.6 4.9 13 171-183 213-225 (512)
10 PLN00077 photosystem II reacti 52.8 21 0.00046 28.3 3.7 29 16-45 14-44 (128)
11 TIGR01299 synapt_SV2 synaptic 45.4 8 0.00017 38.8 0.4 46 122-167 525-570 (742)
12 PRK09716 hypothetical protein; 32.9 19 0.00041 32.1 0.8 40 124-163 159-198 (395)
13 TIGR01299 synapt_SV2 synaptic 29.0 23 0.00049 35.7 0.6 31 137-167 530-560 (742)
14 PF07123 PsbW: Photosystem II 26.4 1.3E+02 0.0028 24.4 4.4 23 23-45 31-53 (138)
15 PF07172 GRP: Glycine rich pro 20.6 1.1E+02 0.0024 22.9 2.9 6 71-76 6-11 (95)
No 1
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.35 E-value=4.3e-13 Score=119.00 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=14.8
Q ss_pred cCceecCcccCCCccCCc-cCCCCcCCCCccCCCC
Q 029172 159 YKANFTVDEICLPLLVSL-PMATPVFPAGFCAPFP 192 (198)
Q Consensus 159 ~~A~f~~AdLs~A~f~~a-~L~~~vf~~~~~~~~~ 192 (198)
.+++|.+++|.+++|.++ .|.++.|.....+|+|
T Consensus 242 s~A~L~gAnL~~A~L~~a~~L~gad~~ga~~tp~~ 276 (291)
T PRK15197 242 TDTKLNGAKLDKIALTLAKALTGADLTGSQHTPTP 276 (291)
T ss_pred CCCCCCCCCCCccccccCCCCCCCcccCCccCCCC
Confidence 333333333333333444 4444455555555544
No 2
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.28 E-value=3.5e-12 Score=89.68 Aligned_cols=72 Identities=18% Similarity=0.324 Sum_probs=60.5
Q ss_pred ceecccccccccccccccccceeccccc-ccccccCCcccCceecCccccCceecCcccCCCccCCccCCCCcC
Q 029172 111 AQFGSADLRKAVHVKENFRRANFTSADM-RESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVF 183 (198)
Q Consensus 111 a~f~~adL~~a~Fs~anL~~AnFs~AdL-r~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf 183 (198)
++|.+++|.+++|.+++|++++|.+++| +++.|++|+|.+++|.++++.+++|.+++|.+++|++ .|.++-|
T Consensus 6 ~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~-~l~~~~F 78 (78)
T PF13599_consen 6 CSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG-NLKGCNF 78 (78)
T ss_dssp EEEESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS-BCTTCB-
T ss_pred EEEECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe-EcCCCcC
Confidence 7888888888888888888888888888 8888888888888888888888888888888888877 8877655
No 3
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.22 E-value=7.6e-12 Score=121.98 Aligned_cols=53 Identities=8% Similarity=0.013 Sum_probs=22.2
Q ss_pred ecccccccccccCCcccCceecCccccCceecCcccCCCccCCccCCCCcCCC
Q 029172 133 FTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVFPA 185 (198)
Q Consensus 133 Fs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf~~ 185 (198)
|.+|+|.+++|.+|+|.+++|.+|+|.+++|++++|.+++|.++.|.++.|..
T Consensus 223 L~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgAdLkgADLSg 275 (782)
T PRK15377 223 IKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEASLKY 275 (782)
T ss_pred cCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCCCCCCCCCCC
Confidence 33333333333333444444444444444444444444444444444444443
No 4
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.22 E-value=9.1e-12 Score=121.45 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=7.1
Q ss_pred ccccccccccccccccccee
Q 029172 114 GSADLRKAVHVKENFRRANF 133 (198)
Q Consensus 114 ~~adL~~a~Fs~anL~~AnF 133 (198)
.+++|.+++|.+++|++++|
T Consensus 193 sg~DLSGADFsg~DLSgAnF 212 (782)
T PRK15377 193 ADRDFSNADFRNINFSKINP 212 (782)
T ss_pred CCCcCCCCCCCCCcccCCcc
Confidence 33333333333333333333
No 5
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.18 E-value=5.2e-12 Score=108.84 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=57.2
Q ss_pred ceecccccccccccccccccceecccccccccccCCcccCceecCccccCceecCcccCCCccCCccCCCCcCC
Q 029172 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVFP 184 (198)
Q Consensus 111 a~f~~adL~~a~Fs~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf~ 184 (198)
+++.+++|+|++|.+++++++++..|+|+++++++|+|+||+|.+++|.++||+|+||+.|++.++.++++.|.
T Consensus 216 aNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~Nlk~A~~e 289 (302)
T KOG1665|consen 216 ANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVNLKEAHME 289 (302)
T ss_pred ccccccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCchhhHHHH
Confidence 55666667777777777777777777777777888888888888888888888888888888888888887776
No 6
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.14 E-value=2.4e-11 Score=85.37 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=38.9
Q ss_pred ccccccccccccccceecccccccccccCCcc-cCceecCccccCceecCcccCCCccCCccCCCCcC
Q 029172 117 DLRKAVHVKENFRRANFTSADMRESDFSGSKF-NGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVF 183 (198)
Q Consensus 117 dL~~a~Fs~anL~~AnFs~AdLr~a~F~gAdL-~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf 183 (198)
+|++++|.+++|.+++|.+++|++++|.+++| .++.|+++.|.+++|.+++|.++.|.++.|.++.|
T Consensus 2 ~~~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f 69 (78)
T PF13599_consen 2 DFENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDF 69 (78)
T ss_dssp EEESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEE
T ss_pred EEEEEEEECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEe
Confidence 45555555555555555555555555555555 56666666666666666666666665555555555
No 7
>PRK09718 hypothetical protein; Validated
Probab=99.05 E-value=1.4e-10 Score=108.57 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=70.5
Q ss_pred CcceecccccccccccccccccceecccccccccccCCcccCceecCccc---cCceecCcccCCCccCCccCCCCcCCC
Q 029172 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA---YKANFTVDEICLPLLVSLPMATPVFPA 185 (198)
Q Consensus 109 sga~f~~adL~~a~Fs~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L---~~A~f~~AdLs~A~f~~a~L~~~vf~~ 185 (198)
.|++|.+++|+++.|.+|+|++++|.+++|++++|++|+|.+++|.+|+| .++.|.+++|++++|.+++|+++-|.+
T Consensus 158 sGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~qT~LkgVDFSd 237 (512)
T PRK09718 158 EYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTGNFKD 237 (512)
T ss_pred cCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcCCCcCCCccccc
Confidence 45777777888888888889999999999999999999999999999998 799999999999999999999999988
Q ss_pred CccC
Q 029172 186 GFCA 189 (198)
Q Consensus 186 ~~~~ 189 (198)
..+.
T Consensus 238 C~Le 241 (512)
T PRK09718 238 CITE 241 (512)
T ss_pred cccc
Confidence 7654
No 8
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.03 E-value=1.1e-10 Score=100.66 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=34.8
Q ss_pred cccccccccccccccceecccccccccccCCcccCceecCccccCceecCcccCCCccCCccCCCCcCCCC
Q 029172 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVFPAG 186 (198)
Q Consensus 116 adL~~a~Fs~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf~~~ 186 (198)
++|+++++.+++|.++++++++|+.+++++|++.+++|++|+|.++++++|||+|+++..+.|.++..-.+
T Consensus 216 aNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~Nlk~A 286 (302)
T KOG1665|consen 216 ANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVNLKEA 286 (302)
T ss_pred ccccccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCchhhH
Confidence 33444444444444444444444444445555555555555555555555555555555555555544333
No 9
>PRK09718 hypothetical protein; Validated
Probab=98.83 E-value=3.2e-09 Score=99.64 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=4.8
Q ss_pred CccCCccCCCCcC
Q 029172 171 PLLVSLPMATPVF 183 (198)
Q Consensus 171 A~f~~a~L~~~vf 183 (198)
+.|.++.|.++.|
T Consensus 213 a~F~~cDLt~AdF 225 (512)
T PRK09718 213 ISFIKSNLTAVMF 225 (512)
T ss_pred CEEeCCCCCCCCc
Confidence 3333333333333
No 10
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=52.81 E-value=21 Score=28.30 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=18.5
Q ss_pred cccCCCCCCcccccCCC--CceeeeeecccCC
Q 029172 16 FCSSSSKGPYQLHALSK--PLWVACQISSKTE 45 (198)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 45 (198)
.+.+.+++-..+|+++. + +|+|.+..+-+
T Consensus 14 ~raa~s~pvlGLP~l~~~~~-~v~Cs~e~k~~ 44 (128)
T PLN00077 14 ARAAAARPVLGLPQLRARSE-RVRCSYEKKAA 44 (128)
T ss_pred hhhhhcCcccCchhhhccCC-ceEEecccCcc
Confidence 33444444566777653 6 99999876554
No 11
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=45.35 E-value=8 Score=38.85 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=18.9
Q ss_pred cccccccccceecccccccccccCCcccCceecCccccCceecCcc
Q 029172 122 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDE 167 (198)
Q Consensus 122 ~Fs~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~Ad 167 (198)
.|.++-|+.|+|.+..-.+..|+.|++.+..|.+.++.+..|.++.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 570 (742)
T TIGR01299 525 SFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSE 570 (742)
T ss_pred ccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhh
Confidence 3333334444444444333444444444444444444333333333
No 12
>PRK09716 hypothetical protein; Provisional
Probab=32.92 E-value=19 Score=32.11 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=14.5
Q ss_pred cccccccceecccccccccccCCcccCceecCccccCcee
Q 029172 124 VKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF 163 (198)
Q Consensus 124 s~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f 163 (198)
.+.++..-+|++-.|.++.+.--.|...+|.+|++.+++|
T Consensus 159 rni~l~~ydftdkhman~ilnpfkl~~t~ftnanmfqvnf 198 (395)
T PRK09716 159 RNVDLDYYDFTDKHMANTILNPFKLNSTNFTNANMFQVNF 198 (395)
T ss_pred cccceeecccchHhHHhhccCceecCCCCCcccceEEEEE
Confidence 3333333333333333333333333333333333333333
No 13
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=28.96 E-value=23 Score=35.69 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=11.8
Q ss_pred ccccccccCCcccCceecCccccCceecCcc
Q 029172 137 DMRESDFSGSKFNGAYLEKAVAYKANFTVDE 167 (198)
Q Consensus 137 dLr~a~F~gAdL~gA~f~~A~L~~A~f~~Ad 167 (198)
-|++|.|++..-.+..|+.|++.++.|.+.|
T Consensus 530 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 560 (742)
T TIGR01299 530 LFEECTFDDVTSSNTFFKNCTFIDTLFENTD 560 (742)
T ss_pred cccccceeeccccchhhhccchhhhhccccc
Confidence 3333333333333333334444443333333
No 14
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=26.41 E-value=1.3e+02 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=16.1
Q ss_pred CCcccccCCCCceeeeeecccCC
Q 029172 23 GPYQLHALSKPLWVACQISSKTE 45 (198)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~ 45 (198)
+..++++.+++=+|.|++..+.+
T Consensus 31 ~~~glp~~~~r~~v~cs~~~~~~ 53 (138)
T PF07123_consen 31 PVLGLPAMRARRRVRCSAEKKPS 53 (138)
T ss_pred cccCCCccccccceEEEeccCcc
Confidence 44566666666479999887765
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.59 E-value=1.1e+02 Score=22.90 Aligned_cols=6 Identities=33% Similarity=0.550 Sum_probs=2.1
Q ss_pred HHHHHH
Q 029172 71 FVSTAL 76 (198)
Q Consensus 71 ~~~~~l 76 (198)
++.++|
T Consensus 6 ~llL~l 11 (95)
T PF07172_consen 6 FLLLGL 11 (95)
T ss_pred HHHHHH
Confidence 333333
Done!