Query 029172
Match_columns 198
No_of_seqs 232 out of 1264
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j8k_A NP275-NP276; pentapepti 99.5 1.8E-14 6.2E-19 119.1 6.1 46 142-187 151-196 (201)
2 3n90_A P15, thylakoid lumenal 99.5 2.6E-14 8.8E-19 112.8 6.5 72 111-182 21-92 (152)
3 3n90_A P15, thylakoid lumenal 99.5 1.3E-13 4.3E-18 108.8 7.9 64 111-174 31-94 (152)
4 2f3l_A RFR-domain; beta helix, 99.4 3.6E-14 1.2E-18 116.0 4.3 18 111-128 62-79 (184)
5 3du1_X ALL3740 protein, HETL; 99.4 7.8E-14 2.7E-18 117.0 6.4 53 136-188 203-255 (257)
6 3du1_X ALL3740 protein, HETL; 99.4 2.4E-13 8.2E-18 114.0 9.3 14 93-106 26-39 (257)
7 2f3l_A RFR-domain; beta helix, 99.4 1.2E-13 4E-18 112.9 5.5 41 111-151 72-112 (184)
8 2bm5_A MFPA, RV3361C, pentapep 99.4 2.8E-13 9.6E-18 109.4 6.8 39 146-184 100-138 (186)
9 2w7z_A EFSQNR, pentapeptide re 99.4 1.7E-13 5.7E-18 112.8 4.8 64 124-187 118-181 (214)
10 2xt2_A ALBG, MCBG-like protein 99.4 6E-13 2.1E-17 107.3 6.7 39 145-183 124-162 (200)
11 2qyu_A Secreted effector prote 99.2 5.7E-12 2E-16 119.8 4.7 27 161-187 128-155 (627)
12 2qyu_A Secreted effector prote 99.2 1.4E-11 4.8E-16 117.1 5.1 65 119-183 74-140 (627)
No 1
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=99.50 E-value=1.8e-14 Score=119.06 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=20.2
Q ss_pred cccCCcccCceecCccccCceecCcccCCCccCCccCCCCcCCCCc
Q 029172 142 DFSGSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVFPAGF 187 (198)
Q Consensus 142 ~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf~~~~ 187 (198)
+|++|+|++++|.+++|.+++|++++|++++|+++.|.+++++++.
T Consensus 151 ~L~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga~l~~~~ 196 (201)
T 2j8k_A 151 DLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEGGN 196 (201)
T ss_dssp BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTSTTTTC-
T ss_pred CCCCCCcCCCEeCCCCcCCCCCCCCCCCCCCcCCCEECcCCCCCCc
Confidence 3333333333444444444444444444444445555555555544
No 2
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.49 E-value=2.6e-14 Score=112.82 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=29.5
Q ss_pred ceecccccccccccccccccceecccccccccccCCcccCceecCccccCceecCcccCCCccCCccCCCCc
Q 029172 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPV 182 (198)
Q Consensus 111 a~f~~adL~~a~Fs~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~v 182 (198)
++|.+++|++++|.+++|++++|.+++|++++|.+|+|++++|++++|.+++|.+|+|++++|.++.|.++.
T Consensus 21 ~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~ 92 (152)
T 3n90_A 21 KDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGAT 92 (152)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred CcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCE
Confidence 444444444444444444444444444444444444444444444444444444444333333333333333
No 3
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.46 E-value=1.3e-13 Score=108.82 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=32.5
Q ss_pred ceecccccccccccccccccceecccccccccccCCcccCceecCccccCceecCcccCCCccC
Q 029172 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLLV 174 (198)
Q Consensus 111 a~f~~adL~~a~Fs~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~ 174 (198)
++|.+++|++++|.+++|.+++|.+++|++++|++|+|++++|.+++|.+++|.+|+|++++|.
T Consensus 31 ~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~ 94 (152)
T 3n90_A 31 QDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMM 94 (152)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCC
T ss_pred CccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEc
Confidence 4455555555555555555555555555555555555555555555555554444444444443
No 4
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.45 E-value=3.6e-14 Score=115.99 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=6.6
Q ss_pred ceeccccccccccccccc
Q 029172 111 AQFGSADLRKAVHVKENF 128 (198)
Q Consensus 111 a~f~~adL~~a~Fs~anL 128 (198)
++|.+++|++++|.+++|
T Consensus 62 ~df~~~~L~~~~f~~~~l 79 (184)
T 2f3l_A 62 EDFSGKSLTYAQFTNADL 79 (184)
T ss_dssp CBCTTCBCTTCEEESCBC
T ss_pred CcCCCCCcCCCEeccCcc
Confidence 333333333333333333
No 5
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=99.45 E-value=7.8e-14 Score=117.00 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=29.2
Q ss_pred cccccccccCCcccCceecCccccCceecCcccCCCccCCccCCCCcCCCCcc
Q 029172 136 ADMRESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVFPAGFC 188 (198)
Q Consensus 136 AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf~~~~~ 188 (198)
++|++++|++|+|++|+|++++|.+++|++|+|.+++|.++.|.+++|+++.+
T Consensus 203 adl~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga~l~~a~l~ga~~~~~~i 255 (257)
T 3du1_X 203 ADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSI 255 (257)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTSCB
T ss_pred cccCCCccCCCcCCCCcCCCCcCCCCCCCCCCccCCEeCCCcccccCCCCCee
Confidence 34444444455555555555555555555555555555666666666665543
No 6
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=99.45 E-value=2.4e-13 Score=114.02 Aligned_cols=14 Identities=29% Similarity=0.188 Sum_probs=5.8
Q ss_pred HHhhhHhhccCccC
Q 029172 93 DLNKYEAETRGEFG 106 (198)
Q Consensus 93 ~~~~~~~~~~~~~~ 106 (198)
.++.+..+.+++.+
T Consensus 26 ~l~~~~~~~~~f~~ 39 (257)
T 3du1_X 26 ILRHYAAGKRNFQH 39 (257)
T ss_dssp HHHHHHTTCCBCTT
T ss_pred HHHHHHhccccccc
Confidence 33444444444443
No 7
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.42 E-value=1.2e-13 Score=112.95 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=18.1
Q ss_pred ceecccccccccccccccccceecccccccccccCCcccCc
Q 029172 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA 151 (198)
Q Consensus 111 a~f~~adL~~a~Fs~anL~~AnFs~AdLr~a~F~gAdL~gA 151 (198)
++|.+++|.+++|++++|++++|.+++|++++|++|+|+++
T Consensus 72 ~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a 112 (184)
T 2f3l_A 72 AQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNG 112 (184)
T ss_dssp CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTC
T ss_pred CEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccc
Confidence 44444444444444444444444444444444444444443
No 8
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.41 E-value=2.8e-13 Score=109.35 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=14.7
Q ss_pred CcccCceecCccccCceecCcccCCCccCCccCCCCcCC
Q 029172 146 SKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVFP 184 (198)
Q Consensus 146 AdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf~ 184 (198)
|+|++++|.+++|.+++|.+|+|++++|.++.|.++.|.
T Consensus 100 a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~ 138 (186)
T 2bm5_A 100 NDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTT 138 (186)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred CccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEec
Confidence 333333333333333333333333333333333333333
No 9
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.39 E-value=1.7e-13 Score=112.76 Aligned_cols=64 Identities=8% Similarity=0.011 Sum_probs=27.8
Q ss_pred cccccccceecccccccccccCCcccCceecCccccCceecCcccCCCccCCccCCCCcCCCCc
Q 029172 124 VKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVFPAGF 187 (198)
Q Consensus 124 s~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf~~~~ 187 (198)
.+|+|.+++|.+++|++++|.+|+|.+++|.+++|.+++|.+++|++++|.++.|.++.|....
T Consensus 118 ~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~ 181 (214)
T 2w7z_A 118 EDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNT 181 (214)
T ss_dssp ESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTSB
T ss_pred eCCCCCCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccCC
Confidence 3333333333333444444444444444444444444444444444444444444444444433
No 10
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.37 E-value=6e-13 Score=107.30 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=14.2
Q ss_pred CCcccCceecCccccCceecCcccCCCccCCccCCCCcC
Q 029172 145 GSKFNGAYLEKAVAYKANFTVDEICLPLLVSLPMATPVF 183 (198)
Q Consensus 145 gAdL~gA~f~~A~L~~A~f~~AdLs~A~f~~a~L~~~vf 183 (198)
+|+|.+++|.+++|.+++|++++|++++|.++.|.++.|
T Consensus 124 ~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f 162 (200)
T 2xt2_A 124 ECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASF 162 (200)
T ss_dssp SCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBC
T ss_pred CCEeecccCCCCccccCCccCcccCCCCccCCccccCCc
Confidence 333333333333333333333333333333333333333
No 11
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.21 E-value=5.7e-12 Score=119.77 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=11.2
Q ss_pred ceecCcccCCCcc-CCccCCCCcCCCCc
Q 029172 161 ANFTVDEICLPLL-VSLPMATPVFPAGF 187 (198)
Q Consensus 161 A~f~~AdLs~A~f-~~a~L~~~vf~~~~ 187 (198)
|+|.+|+|++++| .++.|.++.+....
T Consensus 128 AnLsgAdL~gA~L~~gAdLsGA~L~~ad 155 (627)
T 2qyu_A 128 PSFIDTTLKNTLIRHKANLSGVILNEPD 155 (627)
T ss_dssp CEEEEEECTTCEECSCCEEEEEECCCCC
T ss_pred CeeCCCCCCCCccccCccCCCCcCCCCc
Confidence 3444444444444 23444444444433
No 12
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.17 E-value=1.4e-11 Score=117.13 Aligned_cols=65 Identities=6% Similarity=0.102 Sum_probs=25.2
Q ss_pred ccccccccccccceecccccccccccCCcccCceecCccccCceecCcccC--CCccCCccCCCCcC
Q 029172 119 RKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTVDEIC--LPLLVSLPMATPVF 183 (198)
Q Consensus 119 ~~a~Fs~anL~~AnFs~AdLr~a~F~gAdL~gA~f~~A~L~~A~f~~AdLs--~A~f~~a~L~~~vf 183 (198)
++++|.+++|++++|.+|+|++++|++|+|++|+|.+|+|.+|+|.+|+|+ +|+|.++.|.++.+
T Consensus 74 sgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~gA~L~~~gAnLsgAdL~gA~L 140 (627)
T 2qyu_A 74 SNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNTLI 140 (627)
T ss_dssp TTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECCCTTCCSCCEEEEEECTTCEE
T ss_pred CCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCCccccCCCCeeCCCCCCCCcc
Confidence 333333333333333333333333333333333444444444444433333 34444444444433
Done!