Query 029173
Match_columns 198
No_of_seqs 236 out of 1453
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00403 HMA: Heavy-metal-asso 99.3 5.7E-12 1.2E-16 83.7 7.6 58 97-154 1-62 (62)
2 COG2608 CopZ Copper chaperone 99.2 1.2E-10 2.7E-15 79.9 8.2 64 95-158 3-70 (71)
3 KOG4656 Copper chaperone for s 99.2 1.1E-10 2.4E-15 94.4 7.9 82 94-175 7-88 (247)
4 KOG1603 Copper chaperone [Inor 98.8 4.1E-08 8.9E-13 67.7 7.9 63 95-157 6-69 (73)
5 PLN02957 copper, zinc superoxi 98.5 1E-06 2.3E-11 73.8 9.9 75 91-165 3-77 (238)
6 COG2217 ZntA Cation transport 98.4 2E-06 4.3E-11 82.1 10.7 62 95-157 3-69 (713)
7 KOG0207 Cation transport ATPas 98.4 1.9E-06 4.1E-11 82.8 9.9 100 95-194 147-250 (951)
8 PRK10671 copA copper exporting 98.1 6E-06 1.3E-10 80.4 7.3 61 95-157 4-65 (834)
9 PRK10671 copA copper exporting 97.9 0.00011 2.4E-09 71.6 12.0 64 95-158 100-164 (834)
10 TIGR00003 copper ion binding p 97.5 0.00085 1.8E-08 41.5 7.4 60 96-155 4-67 (68)
11 PRK11033 zntA zinc/cadmium/mer 97.4 0.0032 6.9E-08 60.9 12.8 65 93-157 52-118 (741)
12 KOG0207 Cation transport ATPas 97.3 0.00076 1.6E-08 65.4 7.3 67 95-161 70-140 (951)
13 TIGR02052 MerP mercuric transp 93.9 0.69 1.5E-05 31.0 8.3 62 96-157 25-90 (92)
14 PRK13748 putative mercuric red 92.1 0.99 2.1E-05 41.9 9.1 65 97-161 3-70 (561)
15 cd00371 HMA Heavy-metal-associ 90.1 2 4.3E-05 23.5 6.2 54 99-152 3-59 (63)
16 PF01206 TusA: Sulfurtransfera 86.3 3.8 8.2E-05 27.1 6.2 55 97-158 2-57 (70)
17 COG1888 Uncharacterized protei 79.5 20 0.00044 25.7 7.7 64 95-158 7-79 (97)
18 PRK11018 hypothetical protein; 77.3 17 0.00038 24.8 6.9 57 95-158 8-65 (78)
19 cd03421 SirA_like_N SirA_like_ 73.9 16 0.00035 23.9 5.9 53 98-158 2-55 (67)
20 cd03420 SirA_RHOD_Pry_redox Si 68.8 25 0.00055 23.3 6.0 54 98-158 2-56 (69)
21 PF02680 DUF211: Uncharacteriz 68.8 13 0.00028 26.8 4.7 63 95-158 6-77 (95)
22 cd03422 YedF YedF is a bacteri 60.9 46 0.00099 22.0 6.1 54 98-158 2-56 (69)
23 cd00291 SirA_YedF_YeeD SirA, Y 60.4 43 0.00094 21.6 6.0 52 98-158 2-56 (69)
24 cd03423 SirA SirA (also known 58.5 50 0.0011 21.7 6.3 54 98-158 2-56 (69)
25 PRK00299 sulfur transfer prote 52.2 74 0.0016 21.8 7.5 57 95-158 9-66 (81)
26 COG0425 SirA Predicted redox p 48.9 36 0.00078 23.4 4.0 54 95-155 5-60 (78)
27 TIGR03527 selenium_YedF seleni 42.6 93 0.002 25.2 6.2 52 99-157 2-54 (194)
28 PF01883 DUF59: Domain of unkn 34.3 67 0.0015 21.0 3.5 20 107-126 53-72 (72)
29 PF13732 DUF4162: Domain of un 32.0 1.6E+02 0.0034 19.6 5.2 48 115-163 26-74 (84)
30 COG2177 FtsX Cell division pro 31.6 3.5E+02 0.0075 23.5 10.7 32 95-127 62-93 (297)
31 PRK14054 methionine sulfoxide 29.7 95 0.0021 24.8 4.2 27 106-132 11-37 (172)
32 KOG4730 D-arabinono-1, 4-lacto 21.8 57 0.0012 30.3 1.7 56 95-155 80-136 (518)
No 1
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.34 E-value=5.7e-12 Score=83.70 Aligned_cols=58 Identities=34% Similarity=0.688 Sum_probs=53.7
Q ss_pred Eeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecC---CCHHHHHHHHHHcCCc
Q 029173 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRK 154 (198)
Q Consensus 97 ~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~aI~~~G~~ 154 (198)
+|+| ||+|.+|+.+|++.|.+++||.++.+|+.+++++|.++ .+++++.+.|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 4889 99999999999999999999999999999999999865 3569999999999995
No 2
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.2e-10 Score=79.93 Aligned_cols=64 Identities=31% Similarity=0.549 Sum_probs=56.9
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEe--c-CCCHHHHHHHHHHcCCceEEc
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRIL--G-SSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~--~-~~~~~~l~~aI~~~G~~a~l~ 158 (198)
+..+++ ||+|.+|+..|+++|.+++||..+++|++.+.+.|. . ..+.+.+.++|+++||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 567999 999999999999999999999999999999776665 3 468999999999999987653
No 3
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.1e-10 Score=94.40 Aligned_cols=82 Identities=39% Similarity=0.618 Sum_probs=73.9
Q ss_pred eeEEeecCCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEcCCCCCCCchhhhHHH
Q 029173 94 LLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEGRSTQIFIS 173 (198)
Q Consensus 94 ~~~~~~VGm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~~~~~~~~~~~~~~~~ 173 (198)
.+.+|.|.|+|++|+..|++.|..++||.++++|++.+.+.|.....+.+|.+.|+.+|.++.+++.+.+......+.+.
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~psaval~at~a 86 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKPSAVALLATVA 86 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCchhHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999987665555444
Q ss_pred hH
Q 029173 174 GL 175 (198)
Q Consensus 174 ~l 175 (198)
++
T Consensus 87 ~~ 88 (247)
T KOG4656|consen 87 KY 88 (247)
T ss_pred Hh
Confidence 33
No 4
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.78 E-value=4.1e-08 Score=67.66 Aligned_cols=63 Identities=35% Similarity=0.639 Sum_probs=56.6
Q ss_pred eEEeecCCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcC-CceEE
Q 029173 95 LTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTG-RKARL 157 (198)
Q Consensus 95 ~~~~~VGm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G-~~a~l 157 (198)
...+.+.|||.+|..+|++.|..++||.++.+|...++++|.+..++..+.+.+++.| .....
T Consensus 6 ~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~ 69 (73)
T KOG1603|consen 6 TVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAEL 69 (73)
T ss_pred EEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEE
Confidence 4556669999999999999999999999999999999999999899999999999877 55443
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=98.49 E-value=1e-06 Score=73.80 Aligned_cols=75 Identities=81% Similarity=1.207 Sum_probs=67.0
Q ss_pred CCceeEEeecCCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEcCCCCCCC
Q 029173 91 LPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEG 165 (198)
Q Consensus 91 ~~~~~~~~~VGm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~~~~~~~~ 165 (198)
+++.++++.++|.|..|+.+|++.|.+++||..+.+++..+++.|.+....+.+.+.+++.||.+++++.+.++.
T Consensus 3 ~~~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~~ 77 (238)
T PLN02957 3 LPELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPED 77 (238)
T ss_pred CCcEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCccc
Confidence 456677888899999999999999999999999999999999999876788899999999999999988876653
No 6
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.41 E-value=2e-06 Score=82.14 Aligned_cols=62 Identities=26% Similarity=0.481 Sum_probs=55.9
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecC---CC-HHHHHHHHHHcCCceEE
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SP-LKTMTEALEQTGRKARL 157 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~-~~~l~~aI~~~G~~a~l 157 (198)
+.++.+ ||+|..|+.+|| .|++++||....+|+.++++.+.++ .+ .+.+...+++.||....
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 567999 999999999999 9999999999999999999998754 34 78999999999998765
No 7
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.9e-06 Score=82.75 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=77.4
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecC---CCHHHHHHHHHHcCCceEEcCCCCCCCchhhh
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLVGQGVPEGRSTQI 170 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~aI~~~G~~a~l~~~~~~~~~~~~~ 170 (198)
+.++.| ||.|.+|+.+||+.+.+++||.++++++..+++.|.++ ..+..+.+.|+..|+.+......+........
T Consensus 147 ~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~~~~~~~~~l~ 226 (951)
T KOG0207|consen 147 KIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPYGDTTFKNSLK 226 (951)
T ss_pred cEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeeccccchhhhhh
Confidence 688999 99999999999999999999999999999999998754 58999999999999998776543322221222
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHh
Q 029173 171 FISGLKFLMRLIIFPFMNYFYLFF 194 (198)
Q Consensus 171 ~~~~lk~~~rll~~~~~~~~~l~~ 194 (198)
...+++.|++.++....|.++++|
T Consensus 227 ~~~ei~~w~~~fl~s~~~~~~v~~ 250 (951)
T KOG0207|consen 227 HKEEIRKWKRPFLISLGFSLPVSF 250 (951)
T ss_pred hhhHHHhcchHHHHHHHHHHHHHH
Confidence 345667777776655555555544
No 8
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.12 E-value=6e-06 Score=80.36 Aligned_cols=61 Identities=21% Similarity=0.501 Sum_probs=54.7
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEE
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARL 157 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l 157 (198)
+.++.| ||+|.+|+.+|+++|.+++||..+++|+. +..+.+..+++.+.+.+++.||.++.
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~ 65 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASV 65 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccc
Confidence 578999 99999999999999999999999999994 45566667889999999999999875
No 9
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.93 E-value=0.00011 Score=71.62 Aligned_cols=64 Identities=28% Similarity=0.588 Sum_probs=56.3
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEc
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~ 158 (198)
+..+.+ ||+|.+|+..+++.+.+.+||..+.+++..+++.+.+..+++.+.+.+++.||.+.+.
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~ 164 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI 164 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcccc
Confidence 567889 9999999999999999999999999999998888775567788888999999987543
No 10
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.50 E-value=0.00085 Score=41.52 Aligned_cols=60 Identities=25% Similarity=0.433 Sum_probs=49.6
Q ss_pred EEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecC---CCHHHHHHHHHHcCCce
Q 029173 96 TEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKA 155 (198)
Q Consensus 96 ~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~aI~~~G~~a 155 (198)
..+.+ |+.|..|...+++.+...+++....+++....+.+.+. .....+...+...||.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 46889 99999999999999999999999999999988877642 35666777777777753
No 11
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.36 E-value=0.0032 Score=60.87 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=53.6
Q ss_pred ceeEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCC-CHHHHHHHHHHcCCceEE
Q 029173 93 ELLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS-PLKTMTEALEQTGRKARL 157 (198)
Q Consensus 93 ~~~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~-~~~~l~~aI~~~G~~a~l 157 (198)
..+..+.+ ||+|.+|...+++.+.+.+||..+.+++..+++.+.++. ..+.+.+.+++.||.+..
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~ 118 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRD 118 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhccccccc
Confidence 34677889 999999999999999999999999999999888776431 226677888899998653
No 12
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00076 Score=65.36 Aligned_cols=67 Identities=24% Similarity=0.444 Sum_probs=60.4
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecC---CCHHHHHHHHHHcCCceEEcCCC
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLVGQG 161 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~l~~aI~~~G~~a~l~~~~ 161 (198)
+-.+.+ ||+|..|+..|++.|++.+|+.++.+.+...+..+.++ .+++.+.+.+++.|+.+..+...
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~ 140 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESV 140 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcc
Confidence 567899 99999999999999999999999999999999988754 58999999999999999877543
No 13
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=93.85 E-value=0.69 Score=31.00 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=46.1
Q ss_pred EEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEec---CCCHHHHHHHHHHcCCceEE
Q 029173 96 TEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILG---SSPLKTMTEALEQTGRKARL 157 (198)
Q Consensus 96 ~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~---~~~~~~l~~aI~~~G~~a~l 157 (198)
..+.+ ++.|..|...++..+...+++....++.......+.. ......+...+++.|+..++
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 45668 9999999999999999999988888887777655542 23555565666777877543
No 14
>PRK13748 putative mercuric reductase; Provisional
Probab=92.11 E-value=0.99 Score=41.91 Aligned_cols=65 Identities=23% Similarity=0.437 Sum_probs=51.0
Q ss_pred Eeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEec--CCCHHHHHHHHHHcCCceEEcCCC
Q 029173 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILG--SSPLKTMTEALEQTGRKARLVGQG 161 (198)
Q Consensus 97 ~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~--~~~~~~l~~aI~~~G~~a~l~~~~ 161 (198)
.+.+ +|+|.+|..+++..+...+++....+++......+.. ....+.+...+++.|+..+....+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~~ 70 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADAP 70 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCcc
Confidence 4668 9999999999999999999988888888888766653 235566667778888887665553
No 15
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=90.06 E-value=2 Score=23.53 Aligned_cols=54 Identities=33% Similarity=0.610 Sum_probs=35.0
Q ss_pred ec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecC--CCHHHHHHHHHHcC
Q 029173 99 MV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTG 152 (198)
Q Consensus 99 ~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~l~~aI~~~G 152 (198)
.+ ++.|..|...++..+...+++.....++......+... .....+...+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAG 59 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcC
Confidence 35 88899999999998888888776666666555444422 23444433344443
No 16
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=86.31 E-value=3.8 Score=27.09 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=39.1
Q ss_pred Eeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEc
Q 029173 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 97 ~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~ 158 (198)
++.+ |+.|+...-++.++|.+++.-..+.+ .++.....+.+...++..||....+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G~~l~v-------~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPGEVLEV-------LVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT-EEEE-------EESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCCCEEEE-------EECCccHHHHHHHHHHHCCCEEEEE
Confidence 5788 99999999999999999854433322 2223345678999999999985544
No 17
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.49 E-value=20 Score=25.71 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=42.8
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEec-------CCceEEEec-CCCHHHHHHHHHHcCCceEEc
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDL-------SNQVVRILG-SSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl-------~~~~v~V~~-~~~~~~l~~aI~~~G~~a~l~ 158 (198)
+..+.+ --+-.--.-.+-+.|.+++||..+++.+ .+-+++|.| +.+-+++.+.|++.|-..+-+
T Consensus 7 RlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 7 RLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred eeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 444555 3332333445667788899988776653 344556665 479999999999999776544
No 18
>PRK11018 hypothetical protein; Provisional
Probab=77.30 E-value=17 Score=24.80 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=41.9
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEc
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~ 158 (198)
.+++.+ |..|+.-.-+.+++|.+++....+.|- ++.....+.+...+++.||.....
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G~~L~V~-------~d~~~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKGEILEVV-------SDCPQSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCCCEEEEE-------eCCccHHHHHHHHHHHcCCEEEEE
Confidence 467999 999999999999999988644333222 223346677888899999987543
No 19
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=73.90 E-value=16 Score=23.86 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=36.5
Q ss_pred eec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEc
Q 029173 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 98 ~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~ 158 (198)
+.+ |+.|+.-.-..+++| +++.-..+.|- ++.....+.+...+++.||.....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g~~l~v~-------~d~~~s~~~i~~~~~~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAGGEIEVL-------VDNEVAKENVSRFAESRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCCCEEEEE-------EcChhHHHHHHHHHHHcCCEEEEE
Confidence 567 999999999999999 65433322221 222235578888999999998543
No 20
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=68.78 E-value=25 Score=23.26 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=39.0
Q ss_pred eec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEc
Q 029173 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 98 ~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~ 158 (198)
+.+ |+.|+.-.-+.+++|.+++.-..+.|- +......+.+....+..||.....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~G~~l~V~-------~d~~~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQDGEQLEVK-------ASDPGFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCCCEEEEE-------ECCccHHHHHHHHHHHcCCEEEEE
Confidence 567 999999999999999988543322221 222346678888999999988644
No 21
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=68.78 E-value=13 Score=26.83 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=40.5
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEec-----CCc--eEEEecC-CCHHHHHHHHHHcCCceEEc
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDL-----SNQ--VVRILGS-SPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl-----~~~--~v~V~~~-~~~~~l~~aI~~~G~~a~l~ 158 (198)
+..+.| --|-+. .-.+-+.|.+++||..+++.. +.. +++|.|. ++.+++.++|++.|-..+-+
T Consensus 6 RlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI 77 (95)
T PF02680_consen 6 RLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI 77 (95)
T ss_dssp EEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred EEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence 344555 223333 345677899999998887664 223 3455564 79999999999999876654
No 22
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=60.93 E-value=46 Score=22.01 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=39.1
Q ss_pred eec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEc
Q 029173 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 98 ~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~ 158 (198)
+.. |..|+.-.-+.+++|++++..+.+.|- ++.....+.+...++..||.+...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~G~~l~V~-------~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKPGEILEVI-------SDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCCCEEEEE-------ecCchHHHHHHHHHHHcCCEEEEE
Confidence 456 999999999999999988644333222 223346777888899999998643
No 23
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=60.40 E-value=43 Score=21.58 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=37.9
Q ss_pred eec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEec--CCCHHHHHHHHHHcCCceEEc
Q 029173 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILG--SSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 98 ~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~--~~~~~~l~~aI~~~G~~a~l~ 158 (198)
+.. |+.|+.-..++.++|.+++.-. .+.|.. ......+...++..||.....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~g~---------~l~v~~d~~~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKSGE---------VLEVLLDDPGAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCCCC---------EEEEEecCCcHHHHHHHHHHHcCCEEEEE
Confidence 567 9999999999999999865433 333332 235778889999999996543
No 24
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=58.46 E-value=50 Score=21.73 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=38.5
Q ss_pred eec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEc
Q 029173 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 98 ~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~ 158 (198)
+.. |..|+.-.-+.+++|.+++--..+. +.+......+.+...+++.||.....
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~G~~l~-------V~~dd~~s~~di~~~~~~~g~~~~~~ 56 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKPGDTLL-------VLATDPSTTRDIPKFCTFLGHELLAQ 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCCCCEEE-------EEeCCCchHHHHHHHHHHcCCEEEEE
Confidence 456 9999999999999999885322221 12223346778899999999998654
No 25
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=52.21 E-value=74 Score=21.78 Aligned_cols=57 Identities=5% Similarity=0.024 Sum_probs=40.7
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEEc
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l~ 158 (198)
.+++.. |+.|+.-.-+.+++|.+++....+.|- .+.....+.+....+..|+.....
T Consensus 9 ~~~lD~~Gl~CP~Pll~~kk~l~~l~~G~~l~V~-------~dd~~~~~di~~~~~~~G~~~~~~ 66 (81)
T PRK00299 9 DHTLDALGLRCPEPVMMVRKTVRNMQPGETLLII-------ADDPATTRDIPSFCRFMDHELLAQ 66 (81)
T ss_pred CeEEecCCCCCCHHHHHHHHHHHcCCCCCEEEEE-------eCCccHHHHHHHHHHHcCCEEEEE
Confidence 567899 999999999999999988543322221 122345677888888999987543
No 26
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=48.87 E-value=36 Score=23.40 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=36.2
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcC-Cce
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTG-RKA 155 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G-~~a 155 (198)
..++.+ |+.|+.-...++++|.+++-.....|-. +.....+.+..-+++.| +..
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~~Ge~LeV~~-------ddp~~~~dIp~~~~~~~~~~l 60 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLKPGEILEVIA-------DDPAAKEDIPAWAKKEGGHEL 60 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCCCCCEEEEEe-------cCcchHHHHHHHHHHcCCcEE
Confidence 467999 9999999999999999986444332221 12234566777777454 543
No 27
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=42.61 E-value=93 Score=25.19 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=35.5
Q ss_pred ec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCceEE
Q 029173 99 MV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARL 157 (198)
Q Consensus 99 ~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a~l 157 (198)
.. |+.|+.-+-+.+++|.+++.-..+. +.++.....+.+.+.++..||.+..
T Consensus 2 D~rGl~CP~Pvi~tKkal~~l~~g~~L~-------VlvD~~~a~~nV~~~~~~~G~~v~~ 54 (194)
T TIGR03527 2 DARGLACPQPVILTKKALDELGEEGVLT-------VIVDNEAAKENVSKFATSLGYEVEV 54 (194)
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCCCEEE-------EEECCccHHHHHHHHHHHcCCEEEE
Confidence 45 8999999999999999885322221 2222334566777888888887654
No 28
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=34.27 E-value=67 Score=21.05 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=15.1
Q ss_pred HHHHHHHHHhccCCccEEEE
Q 029173 107 CVDAVKQKLQTVTGVKNVEV 126 (198)
Q Consensus 107 C~~~Ie~~L~~~~GV~~v~v 126 (198)
=...|+++|..++||.+++|
T Consensus 53 l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 53 LREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHHHHTSTT-SEEEE
T ss_pred HHHHHHHHHHhCCCCceEeC
Confidence 34677888999999998875
No 29
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=32.02 E-value=1.6e+02 Score=19.63 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=32.7
Q ss_pred HhccCCccEEEEecCC-ceEEEecCCCHHHHHHHHHHcCCceEEcCCCCC
Q 029173 115 LQTVTGVKNVEVDLSN-QVVRILGSSPLKTMTEALEQTGRKARLVGQGVP 163 (198)
Q Consensus 115 L~~~~GV~~v~vdl~~-~~v~V~~~~~~~~l~~aI~~~G~~a~l~~~~~~ 163 (198)
|..++||..+..+-.. -.+.+........+.+.+.+.|. ........|
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~~~P 74 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI-IRSFEEEEP 74 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC-eeEEEEcCC
Confidence 7778999988765332 23344455677889999999998 665554444
No 30
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=31.61 E-value=3.5e+02 Score=23.49 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=24.8
Q ss_pred eEEeecCCCChhHHHHHHHHHhccCCccEEEEe
Q 029173 95 LTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVD 127 (198)
Q Consensus 95 ~~~~~VGm~C~~C~~~Ie~~L~~~~GV~~v~vd 127 (198)
.+.++.+.+ +.|...+++.+.+.+||.+++.-
T Consensus 62 ~vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~~ 93 (297)
T COG2177 62 TVYLQIDAD-QDDAALVREKIEGIPGVKSVRFI 93 (297)
T ss_pred EEEEecCCC-hHHHHHHHHHHhcCCCcceEEEe
Confidence 344444444 88999999999999999988765
No 31
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=29.68 E-value=95 Score=24.76 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhccCCccEEEEecCCce
Q 029173 106 GCVDAVKQKLQTVTGVKNVEVDLSNQV 132 (198)
Q Consensus 106 ~C~~~Ie~~L~~~~GV~~v~vdl~~~~ 132 (198)
+|-+-+|..+.+++||.++.+-..++.
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCC
Confidence 588888999999999999999876654
No 32
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=21.78 E-value=57 Score=30.26 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=39.4
Q ss_pred eEEeec-CCCChhHHHHHHHHHhccCCccEEEEecCCceEEEecCCCHHHHHHHHHHcCCce
Q 029173 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKA 155 (198)
Q Consensus 95 ~~~~~V-Gm~C~~C~~~Ie~~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~l~~aI~~~G~~a 155 (198)
..-..+ +|.|..-...-.+.|+ .| +++|.+..+++|+.-+....+++.+++.|+..
T Consensus 80 g~gHSp~~l~ctdg~lisl~~ln---kV--v~~dpe~~tvTV~aGirlrQLie~~~~~GlsL 136 (518)
T KOG4730|consen 80 GSGHSPSKLVCTDGLLISLDKLN---KV--VEFDPELKTVTVQAGIRLRQLIEELAKLGLSL 136 (518)
T ss_pred cccCCCCcceeccccEEEhhhhc---cc--eeeCchhceEEeccCcCHHHHHHHHHhcCccc
Confidence 333456 8888765322233333 33 55688889999998789999999999999863
Done!