BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029174
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 206 bits (525), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 94/161 (58%), Positives = 117/161 (72%), Gaps = 1/161 (0%)
Query: 22 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
H LE WTFWFDN + AWGS++ ++TF TVE+FW LY I PS+L + ADFH
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 82 FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
FK IEPKWEDP CANGGKW+++ R + DT WL T++A+IGEQFD DEICG V SVR
Sbjct: 62 FKNKIEPKWEDPICANGGKWTISCGRGKS-DTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120
Query: 142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
Q+Q+++A+WTK AANEAAQ+ IGK+WKE LD D I + H
Sbjct: 121 QKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVH 161
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 203 bits (517), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Query: 21 PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFH 80
PH LE WTFWFD + + AAWGSSMR +YTF TVEEFW +Y I P +L + ADF+
Sbjct: 2 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFY 61
Query: 81 LFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASV 140
FK IEPKWEDP CANGGKW+ K DT WL T++A+IGEQFD DEICG V +V
Sbjct: 62 CFKHKIEPKWEDPICANGGKWTANY-PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 141 RQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
R R +K+++WTK A+NEAAQ+ IGK+WKE LD + + + FH
Sbjct: 121 RGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFH 162
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 202 bits (515), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 115/161 (71%), Gaps = 1/161 (0%)
Query: 22 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
H LE WTFWFDN + AWGS++ ++TF TVE+FW LY I PS+L + ADFH
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 82 FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
FK IEPKWEDP ANGGKW+++ R DT WL T++A+IGEQFD DEICG V SVR
Sbjct: 62 FKNKIEPKWEDPISANGGKWTISCGR-GKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120
Query: 142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
Q+Q+++A+WTK AANEAAQ+ IGK+WKE LD D I + H
Sbjct: 121 QKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVH 161
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
P H L+ +W WF K K W +++R + FDTVE+FW LY I S L
Sbjct: 31 PEHYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 87
Query: 76 NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
D+ LFK GIEP WED + GG+W +T N R+++LD WLET++ LIGE FD+ +D
Sbjct: 88 GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 147
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
++CG V +VR + DK+A+WT N A IG+ +KE L + +I +
Sbjct: 148 DVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQ 198
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
P H L+ +W WF K K W +++R + FDTVE+FW LY I S L
Sbjct: 31 PEHYIKHPLQNRWALWFFKKDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 87
Query: 76 NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
D+ LFK GIEP WED + GG+W +T N R+++LD WLET++ LIGE FD+ +D
Sbjct: 88 GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 147
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
++CG V +VR + DK+A+WT N A IG+ +KE L + +I +
Sbjct: 148 DVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQ 198
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
P H L+ +W WF K K W +++R + FDTVE+FW LY I S L
Sbjct: 54 PEHYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 110
Query: 76 NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
D+ LFK GIEP WED + GG+W +T N R+++LD WLET++ LIGE FD+ +D
Sbjct: 111 GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 170
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
++CG V +VR + DK+A+WT N A IG+ +KE L + +I +
Sbjct: 171 DVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQ 221
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa-
4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
P H L+ +W WF K K W +++R + FDTVE+FW LY I S L
Sbjct: 5 PEHYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 61
Query: 76 NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
D+ LFK GIEP WED + GG+W +T N R+++LD WLET++ LIGE FD+ +D
Sbjct: 62 GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 121
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
++CG V +VR + DK+A+WT N A IG+ +KE L + +I +
Sbjct: 122 DVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQ 172
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
P H L+ +W WF K K W +++R + FDTVE+FW LY I S L
Sbjct: 4 PEHYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 60
Query: 76 NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
D+ LFK GIEP WED + GG+W +T N R+++LD WLET++ LIGE FD+ +D
Sbjct: 61 GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 120
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
++CG V +VR + DK+A+WT N A IG+ +KE L + +I +
Sbjct: 121 DVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQ 171
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Query: 22 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
H L WT W+ + K +W ++ +FDTVE+FW LY I PS + + +D+ L
Sbjct: 70 HPLMNVWTLWYLENDRSK---SWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 126
Query: 82 FKTGIEPKWEDPECANGGKWSVTSNR--KANLDTMWLETMMALIGEQFDEADEICGVVAS 139
FK I P WED GG+W +T N+ K +LD +WL+ ++ LIGE FD +D+ICG V +
Sbjct: 127 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVIN 186
Query: 140 VRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRITYSFH 182
+R + +K+++WT NE A + IG K ++ L + + + Y H
Sbjct: 187 IRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLH 231
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 8/158 (5%)
Query: 22 HKLERKWTFWFDNISKP--KQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADF 79
H L KWT W+ +KP + +W +R V +F TVEEFW + + I +P LP+ +D+
Sbjct: 37 HPLNTKWTLWY---TKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93
Query: 80 HLFKTGIEPKWEDPECANGGKWSV-TSNRKANLDTMWLETMMALIGEQFDEAD-EICGVV 137
H+F+ + P+WED A GGKWS + A++D +WL T++A+IGE DE D +I GVV
Sbjct: 94 HVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVV 153
Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD 175
S+R+ +K ALWTK+ E + IG K+K++L +TD
Sbjct: 154 LSIRKGGNKFALWTKSEDKEPL-LRIGGKFKQVLKLTD 190
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 8/164 (4%)
Query: 22 HKLERKWTFWFDNISKP--KQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADF 79
H L KWT W+ +KP + +W +R V +F TVEEFW + + I +P LP+ +D+
Sbjct: 37 HPLNTKWTLWY---TKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93
Query: 80 HLFKTGIEPKWEDPECANGGKWSV-TSNRKANLDTMWLETMMALIGEQFDEAD-EICGVV 137
H+F+ + P+WED A GGKWS + A++D +WL T++A+IGE DE D +I GVV
Sbjct: 94 HVFRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVV 153
Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSF 181
S+R+ +K ALWTK E + IG K+K++L +TD F
Sbjct: 154 LSIRKGGNKFALWTKCEDKEPL-LRIGGKFKQVLKLTDDGHLEF 196
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 9/167 (5%)
Query: 22 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
H L+ W W+ K + W +++V FDTVE+FW LY I S L +D++L
Sbjct: 3 HPLQCHWALWY---LKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59
Query: 82 FKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQF-DEADEICGVV 137
FK GI+P WED GG+W V +++ LD WLE +MA+IGEQF D + ICG V
Sbjct: 60 FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119
Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRITYSFH 182
+VRQ+ DK++LWT+ + + + IG+ K L++ T+ I Y H
Sbjct: 120 VNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVH 166
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 3/161 (1%)
Query: 15 VPPQSQPHKLERKWTFWFDNIS--KPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSR 72
V P H L+ +TFW+ + +P ++ +++++ TF +VE+FW Y + +P
Sbjct: 8 VVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGD 67
Query: 73 LPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADE 132
L ++DFHLFK GI+P WED NGGKW + RK W ++A++GEQF +E
Sbjct: 68 LTGHSDFHLFKEGIKPMWEDDANKNGGKW-IIRLRKGLASRCWENLILAMLGEQFMVGEE 126
Query: 133 ICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV 173
ICG V SVR ++D +++W KTA+++A I + +L++
Sbjct: 127 ICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNL 167
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 21 PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFH 80
PH L+ W+++ K W + KV TF T+E+FW + +P + D +
Sbjct: 9 PHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 81 LFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADE---ICGVV 137
+FK+ I PKWEDP+ NGG+W + + ++D +W E +M LIG +D +E ICG V
Sbjct: 66 MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITY 179
R R KL++W + E + IG++ KE L++ D I +
Sbjct: 126 FQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYF 167
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 15 VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLP 74
+PP+ L WTFW D A S+++K+YT TV+ FW +Y I + LP
Sbjct: 23 LPPEPGGVPLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLP 82
Query: 75 MNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEA---- 130
+ +HL + P WE+ A GG W + + + T+W E ++A IGEQF +
Sbjct: 83 LRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDST-STVWKELLLATIGEQFTDCAAAD 141
Query: 131 DEICGVVASVRQRQDKLALWTKTAA 155
DEI GV SVR R+D + +W A+
Sbjct: 142 DEIIGVSVSVRDREDVVQVWNVNAS 166
>pdb|1UZC|A Chain A, The Structure Of An Ff Domain From Human HypaFBP11
pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding
Intermediate At Atomic Resolution
Length = 71
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 49 RKVYTFDTVEEFWCLYEQIFKPSRLPMNAD 78
+K YT++T EE ++++ K R+P NA
Sbjct: 6 KKTYTWNTKEEAKQAFKELLKEKRVPSNAS 35
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 46 SSMRKVYTFDTVEEFW 61
+S RKVY DTV EFW
Sbjct: 26 NSTRKVYPSDTVAEFW 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,366,837
Number of Sequences: 62578
Number of extensions: 205370
Number of successful extensions: 469
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 18
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)