Query 029174
Match_columns 197
No_of_seqs 114 out of 663
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670 Translation initiation 100.0 1.7E-60 3.6E-65 391.3 14.9 184 11-197 24-212 (212)
2 PF01652 IF4E: Eukaryotic init 100.0 1.6E-52 3.5E-57 337.1 16.5 160 23-182 1-165 (165)
3 PTZ00040 translation initiatio 100.0 1.8E-50 3.8E-55 340.6 16.6 166 18-183 34-231 (233)
4 KOG1669 Predicted mRNA cap-bin 100.0 4.7E-51 1E-55 327.3 11.2 176 15-191 23-200 (208)
5 COG5053 CDC33 Translation init 100.0 2.4E-44 5.2E-49 291.8 13.3 167 18-185 33-204 (217)
6 PF08939 DUF1917: Domain of un 95.6 0.1 2.2E-06 44.9 9.3 79 96-181 148-236 (243)
7 PF11525 CopK: Copper resistan 53.4 7.2 0.00016 27.4 1.1 20 72-92 11-30 (73)
8 KOG0080 GTPase Rab18, small G 33.5 65 0.0014 26.7 3.8 40 117-157 26-71 (209)
9 PHA00689 hypothetical protein 26.7 37 0.00081 22.3 1.1 13 89-105 29-41 (62)
10 KOG0098 GTPase Rab2, small G p 25.7 1.8E+02 0.0039 24.6 5.3 43 117-160 21-69 (216)
11 COG5417 Uncharacterized small 23.8 49 0.0011 23.7 1.3 31 92-122 10-44 (81)
12 cd04925 ACT_ACR_2 ACT domain-c 23.0 2.5E+02 0.0053 18.9 5.1 42 130-171 25-72 (74)
13 PF10842 DUF2642: Protein of u 22.2 1.7E+02 0.0036 20.2 3.8 41 110-150 7-50 (66)
14 PF06462 Hyd_WA: Propeller; I 21.2 67 0.0015 18.6 1.4 20 78-102 10-29 (32)
No 1
>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-60 Score=391.25 Aligned_cols=184 Identities=47% Similarity=0.917 Sum_probs=171.0
Q ss_pred cccCCCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCC
Q 029174 11 AAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKW 90 (197)
Q Consensus 11 ~~~~~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~W 90 (197)
.+...|+....|||++.|||||..+.++ ..|++.|++|.+|+|||+||++|++|++|+.|+.+++|++||+||+|||
T Consensus 24 ~~~~~~~~~~~hpL~~~WTlW~l~~d~~---ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmW 100 (212)
T KOG1670|consen 24 EESAKPENHIKHPLQNNWTLWFLKNDRN---KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMW 100 (212)
T ss_pred hhccCcccccccccccceeEEeecCCcc---ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccc
Confidence 3344566667899999999999998664 3899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEcCC--CCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 029174 91 EDPECANGGKWSVTSNR--KANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWK 168 (197)
Q Consensus 91 EDp~N~nGG~~~i~~~~--k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk 168 (197)
|||+|.|||||.+.+.+ ++.+|.+|.++||++|||+|+++++|||+|+++|+++++|+||++++.|++.+..|+..+|
T Consensus 101 ED~~N~~GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~~~l~IG~~~K 180 (212)
T KOG1670|consen 101 EDPANKNGGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEEAVLRIGRVLK 180 (212)
T ss_pred cCccccCCCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchHHHHHHHHHHH
Confidence 99999999999999984 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCC-ceeeEeCCcccc--CCCccceeEC
Q 029174 169 EILDVTD-RITYSFHDDSRR--DRSVKSRYSV 197 (197)
Q Consensus 169 ~~L~l~~-~i~y~~H~~~~~--~~~~~~~~~~ 197 (197)
++|++++ .|.|..|.++.. ++.+|++|+|
T Consensus 181 e~L~~~~~~i~y~~H~ds~~k~~s~~K~~~tv 212 (212)
T KOG1670|consen 181 EVLGLPRDVIGYQLHKDSSKKSGSTAKNRYTV 212 (212)
T ss_pred HHhCCCcceEEEEechhhHhhcCCcccceecC
Confidence 9999995 999999999986 6667999986
No 2
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=1.6e-52 Score=337.09 Aligned_cols=160 Identities=48% Similarity=0.956 Sum_probs=147.0
Q ss_pred CCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCCcEEE
Q 029174 23 KLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWS 102 (197)
Q Consensus 23 ~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nGG~~~ 102 (197)
||+++|||||+......+.++|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|++||+|+
T Consensus 1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~ 80 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI 80 (165)
T ss_dssp EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence 79999999999654444558999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC--CchHHHHHHHHHHHhcCCCCCC-CceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC--ce
Q 029174 103 VTSNRK--ANLDTMWLETMMALIGEQFDEA-DEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD--RI 177 (197)
Q Consensus 103 i~~~~k--~~~d~~We~lll~~Ige~~~~~-~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~--~i 177 (197)
|++.++ ..++++|++||+++|||+|+.. ++||||++|+|++.++|+||++++++++.+..|++.++++|++++ .+
T Consensus 81 i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 160 (165)
T PF01652_consen 81 IRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQNRIGKKIKEILNLPPNTKI 160 (165)
T ss_dssp EEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHHHHHHHHHHHHHTTTTTSEE
T ss_pred EEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCHHHHHHHHHHHHHHhCcCCCCeE
Confidence 999843 3899999999999999999865 899999999999999999999999888889999999999999988 78
Q ss_pred eeEeC
Q 029174 178 TYSFH 182 (197)
Q Consensus 178 ~y~~H 182 (197)
+|++|
T Consensus 161 ~y~~H 165 (165)
T PF01652_consen 161 EYKSH 165 (165)
T ss_dssp EEEEH
T ss_pred EEecC
Confidence 99998
No 3
>PTZ00040 translation initiation factor E4; Provisional
Probab=100.00 E-value=1.8e-50 Score=340.63 Aligned_cols=166 Identities=25% Similarity=0.517 Sum_probs=145.5
Q ss_pred CCCCCCCCCceEEEEEcCCCC-ccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcce---------------eee
Q 029174 18 QSQPHKLERKWTFWFDNISKP-KQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNAD---------------FHL 81 (197)
Q Consensus 18 ~~~~h~L~~~Wt~w~~~~~~~-~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~---------------~~~ 81 (197)
++.+|||+++|||||+.+..+ .+..+|.++|++|++|+|||+||++|+||++||+|+.+++ |||
T Consensus 34 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~l 113 (233)
T PTZ00040 34 LSTPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMI 113 (233)
T ss_pred cCCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeee
Confidence 577899999999999987443 3457899999999999999999999999999999998864 999
Q ss_pred ecCCCccCCCCCCCCCCcEEEEEcCCC----CchHHHHHHHHHHHhcCCCCCCCceeeEEE----EEeCCCcEEEEecCC
Q 029174 82 FKTGIEPKWEDPECANGGKWSVTSNRK----ANLDTMWLETMMALIGEQFDEADEICGVVA----SVRQRQDKLALWTKT 153 (197)
Q Consensus 82 FK~gI~P~WEDp~N~nGG~~~i~~~~k----~~~d~~We~lll~~Ige~~~~~~~I~Gi~~----s~R~~~~~isIW~~~ 153 (197)
||+||+||||||+|++||+|++++.++ +.+|++|++|||++|||+|+.+++||||++ |+|++.+||+||+++
T Consensus 114 FK~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~ 193 (233)
T PTZ00040 114 FKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTN 193 (233)
T ss_pred ecCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCC
Confidence 999999999999999999999999632 468999999999999999998899999996 667788999999999
Q ss_pred CCCHHHHHHHHHHHHHHhC--CC------CceeeEeCC
Q 029174 154 AANEAAQMGIGKKWKEILD--VT------DRITYSFHD 183 (197)
Q Consensus 154 ~~~~~~~~~I~~~lk~~L~--l~------~~i~y~~H~ 183 (197)
+++++.+.+|++.++++|. ++ +++.-++|.
T Consensus 194 ~~d~~~~~~i~~~i~~~l~~~l~~~~~~~~~~~~~~h~ 231 (233)
T PTZ00040 194 LGDQSDRNQLMKEIETCMARRLDGSSGFPPKFDLKSHS 231 (233)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcceecCCcceeeccc
Confidence 9999888999999998763 22 255666665
No 4
>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-51 Score=327.31 Aligned_cols=176 Identities=35% Similarity=0.691 Sum_probs=165.3
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCC
Q 029174 15 VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPE 94 (197)
Q Consensus 15 ~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~ 94 (197)
+-.+...|||++..+|||........+++|++++++|++|.|||+||++|.||++|+.|+...++||||+||+|+|||++
T Consensus 23 ~v~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~a 102 (208)
T KOG1669|consen 23 RVLMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKA 102 (208)
T ss_pred ccCCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcC
Confidence 34466789999999999998765556799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCC
Q 029174 95 CANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVT 174 (197)
Q Consensus 95 N~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~ 174 (197)
|.|||+|+|+++ |+.+.++||+||++++||+|..+++|||.|+|+|.++++|+||+++.++......|++.||..|+||
T Consensus 103 N~nGgkWiirlk-K~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta~~~~irdtLk~~L~lp 181 (208)
T KOG1669|consen 103 NCNGGKWIIRLK-KGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTADTGRIRDTLKRVLELP 181 (208)
T ss_pred CCCCCeEEEEeh-HHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcchhHHHHHHHHHHHhcCC
Confidence 999999999997 8999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred C--ceeeEeCCccccCCCc
Q 029174 175 D--RITYSFHDDSRRDRSV 191 (197)
Q Consensus 175 ~--~i~y~~H~~~~~~~~~ 191 (197)
. .++||.|.+++++.++
T Consensus 182 ~~~vmeYK~H~~~Lr~~~s 200 (208)
T KOG1669|consen 182 FNTVMEYKNHDDSLRDHSS 200 (208)
T ss_pred cceEEEecchhhhhhcccc
Confidence 8 7899999999985443
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-44 Score=291.80 Aligned_cols=167 Identities=39% Similarity=0.795 Sum_probs=153.1
Q ss_pred CCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCC
Q 029174 18 QSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECAN 97 (197)
Q Consensus 18 ~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~n 97 (197)
+...|||+..|||||..+...+ .+.|++.|+.|++|+|||+||.+.++|+.++.||..++|++||+||+|+|||++|.|
T Consensus 33 f~~~hpl~~~wtlw~l~p~e~g-~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~ 111 (217)
T COG5053 33 FMNKHPLAFHWTLWFLKPPEDG-LESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMN 111 (217)
T ss_pred HhhcCccccceEEEEecCCccc-hhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCC
Confidence 3456999999999999986543 245999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCC--CchHHHHHHHHHHHhcCCCC-CCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCC
Q 029174 98 GGKWSVTSNRK--ANLDTMWLETMMALIGEQFD-EADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVT 174 (197)
Q Consensus 98 GG~~~i~~~~k--~~~d~~We~lll~~Ige~~~-~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~ 174 (197)
||+|.+.++.+ ...+++|...++++|||+++ .+.+|||||++.|++.++|+||++++.+.+.+.+|+.++|..|+|+
T Consensus 112 Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl~ls 191 (217)
T COG5053 112 GGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLELS 191 (217)
T ss_pred CCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhccccc
Confidence 99999999743 35899999999999999997 4778999999999999999999999999999999999999999998
Q ss_pred C--ceeeEeCCcc
Q 029174 175 D--RITYSFHDDS 185 (197)
Q Consensus 175 ~--~i~y~~H~~~ 185 (197)
+ .++|++|.-+
T Consensus 192 ~~~tle~k~heSs 204 (217)
T COG5053 192 DVETLEYKAHESS 204 (217)
T ss_pred ceeEEEecccccc
Confidence 8 7899999633
No 6
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=95.63 E-value=0.1 Score=44.89 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=53.9
Q ss_pred CCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEe------CCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 029174 96 ANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR------QRQDKLALWTKTAANEAAQMGIGKKWKE 169 (197)
Q Consensus 96 ~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R------~~~~~isIW~~~~~~~~~~~~I~~~lk~ 169 (197)
.-.|+|+|-++ ++.+|.+|..+.-+++.+.|. +++-|+.+ .+...|.|.+.|..+.+.+.++.+.|++
T Consensus 148 v~sGKWmlf~~-~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~RVl~~Lr~ 221 (243)
T PF08939_consen 148 VTSGKWMLFPP-PDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVMRVLRRLRE 221 (243)
T ss_dssp ---EEEEEEE--TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHHHHHHHHHH
T ss_pred cccceeEEEcC-HHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33799999998 678999999999999988773 24445541 1236799999999999889999999976
Q ss_pred HhCCCC----ceeeEe
Q 029174 170 ILDVTD----RITYSF 181 (197)
Q Consensus 170 ~L~l~~----~i~y~~ 181 (197)
. ++.. .|.||+
T Consensus 222 ~-gl~~~~~~~i~YK~ 236 (243)
T PF08939_consen 222 L-GLVDPDGRPIYYKP 236 (243)
T ss_dssp T-T--S-----EEEEE
T ss_pred c-CCccccccceeecC
Confidence 6 6544 688886
No 7
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=53.45 E-value=7.2 Score=27.37 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.4
Q ss_pred CCCCcceeeeecCCCccCCCC
Q 029174 72 RLPMNADFHLFKTGIEPKWED 92 (197)
Q Consensus 72 ~l~~~~~~~~FK~gI~P~WED 92 (197)
+|..|+++|+||+|-..| ||
T Consensus 11 ~LkDGstvyiFKDGKMam-Ed 30 (73)
T PF11525_consen 11 PLKDGSTVYIFKDGKMAM-ED 30 (73)
T ss_dssp EBTTSEEEEEETTS-EEE-EE
T ss_pred ecCCCCEEEEEcCCceeh-hh
Confidence 578899999999997653 54
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=33.50 E-value=65 Score=26.68 Aligned_cols=40 Identities=30% Similarity=0.542 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCCC-CCceeeEEEE-----EeCCCcEEEEecCCCCCH
Q 029174 117 ETMMALIGEQFDE-ADEICGVVAS-----VRQRQDKLALWTKTAANE 157 (197)
Q Consensus 117 ~lll~~Ige~~~~-~~~I~Gi~~s-----~R~~~~~isIW~~~~~~~ 157 (197)
.|++.++...|+. .+--.||-+. ++.+..+++||= +..+|
T Consensus 26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWD-TAGqE 71 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWD-TAGQE 71 (209)
T ss_pred HHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEe-ccchH
Confidence 5788899999974 3444898774 456789999994 34433
No 9
>PHA00689 hypothetical protein
Probab=26.67 E-value=37 Score=22.34 Aligned_cols=13 Identities=46% Similarity=1.370 Sum_probs=10.6
Q ss_pred CCCCCCCCCCcEEEEEc
Q 029174 89 KWEDPECANGGKWSVTS 105 (197)
Q Consensus 89 ~WEDp~N~nGG~~~i~~ 105 (197)
-|||. ||.|++.-
T Consensus 29 rwedd----ggewvlme 41 (62)
T PHA00689 29 RWEDD----GGEWVLME 41 (62)
T ss_pred eeecC----CCcEEEEe
Confidence 59986 99999853
No 10
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.74 E-value=1.8e+02 Score=24.57 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCC-CCCceeeEEE-----EEeCCCcEEEEecCCCCCHHHH
Q 029174 117 ETMMALIGEQFD-EADEICGVVA-----SVRQRQDKLALWTKTAANEAAQ 160 (197)
Q Consensus 117 ~lll~~Ige~~~-~~~~I~Gi~~-----s~R~~~~~isIW~~~~~~~~~~ 160 (197)
.|++-+....|. ..+.-.||.+ .++.+.+++.|| +++..|...
T Consensus 21 clllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiw-DtaGqe~fr 69 (216)
T KOG0098|consen 21 CLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIW-DTAGQESFR 69 (216)
T ss_pred HHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEE-ecCCcHHHH
Confidence 466777788885 4556778775 666788999999 556655433
No 11
>COG5417 Uncharacterized small protein [Function unknown]
Probab=23.81 E-value=49 Score=23.66 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCCCCCCcEEEEEcCC----CCchHHHHHHHHHHH
Q 029174 92 DPECANGGKWSVTSNR----KANLDTMWLETMMAL 122 (197)
Q Consensus 92 Dp~N~nGG~~~i~~~~----k~~~d~~We~lll~~ 122 (197)
|..|-|||.+-++++. |..++.+|+.+=+.+
T Consensus 10 D~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~ 44 (81)
T COG5417 10 DFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISI 44 (81)
T ss_pred EeEecCCceEEEeccccchHHHHHHHHHHHhhccc
Confidence 5678899999999983 346788888765543
No 12
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.97 E-value=2.5e+02 Score=18.90 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=28.1
Q ss_pred CCceeeEEEEEeCCCcEEEEecCCCC------CHHHHHHHHHHHHHHh
Q 029174 130 ADEICGVVASVRQRQDKLALWTKTAA------NEAAQMGIGKKWKEIL 171 (197)
Q Consensus 130 ~~~I~Gi~~s~R~~~~~isIW~~~~~------~~~~~~~I~~~lk~~L 171 (197)
+=.|.+..+........-.+++.+.+ +++....|.+.|.+.|
T Consensus 25 ~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 25 HCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred CCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 34688888886655566667766533 4555678888877765
No 13
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=22.18 E-value=1.7e+02 Score=20.17 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHhcCCCC---CCCceeeEEEEEeCCCcEEEEe
Q 029174 110 NLDTMWLETMMALIGEQFD---EADEICGVVASVRQRQDKLALW 150 (197)
Q Consensus 110 ~~d~~We~lll~~Ige~~~---~~~~I~Gi~~s~R~~~~~isIW 150 (197)
..|-++-..+..+||-.+- ..+.+.|+...++...+.++.+
T Consensus 7 ~vdpyvyq~lq~liG~~vvV~T~~g~v~G~L~~V~pDhIvl~~~ 50 (66)
T PF10842_consen 7 LVDPYVYQTLQSLIGQRVVVQTTRGSVRGILVDVKPDHIVLEEN 50 (66)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEcCCcEEEEEEeecCCEEEEEeC
Confidence 4678899999999998873 4678999999999988888876
No 14
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=21.17 E-value=67 Score=18.62 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=14.6
Q ss_pred eeeeecCCCccCCCCCCCCCCcEEE
Q 029174 78 DFHLFKTGIEPKWEDPECANGGKWS 102 (197)
Q Consensus 78 ~~~~FK~gI~P~WEDp~N~nGG~~~ 102 (197)
.--+||.||.| .|+.|-.|.
T Consensus 10 G~v~~R~Gis~-----~~P~G~~W~ 29 (32)
T PF06462_consen 10 GSVYFRTGISP-----SNPEGTSWE 29 (32)
T ss_pred CCEEEECcCCC-----CCCCCCCcE
Confidence 34689999997 466777765
Done!