Query 029174
Match_columns 197
No_of_seqs 114 out of 663
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ap8_A Translation initiation 100.0 5.4E-61 1.9E-65 400.5 20.3 180 15-197 30-213 (213)
2 2idr_A Eukaryotic translation 100.0 3.4E-61 1.2E-65 391.8 17.8 176 21-197 1-177 (177)
3 1ipb_A Eukaryotic translation 100.0 6.1E-60 2.1E-64 395.2 17.9 182 13-197 28-217 (217)
4 3m94_A Translation initiation 100.0 1.6E-59 5.3E-64 385.4 17.7 174 21-197 2-183 (189)
5 1l8b_A Eukaryotic translation 100.0 6.8E-60 2.3E-64 387.9 15.3 180 15-197 3-190 (190)
6 3hxi_A Eukaryotic translation 100.0 1.2E-59 4.1E-64 386.1 13.5 176 19-197 7-189 (189)
7 2jgb_A Eukaryotic translation 100.0 3.8E-58 1.3E-62 378.9 17.0 173 18-191 11-187 (195)
8 4axg_A Eukaryotic translation 100.0 1.1E-57 3.8E-62 388.3 18.4 182 13-197 61-248 (248)
9 1ztp_A Basophilic leukemia exp 99.4 2.5E-13 8.6E-18 114.7 9.1 97 93-196 121-220 (251)
10 2k0q_A Putative uncharacterize 50.9 5.4 0.00019 27.1 1.1 18 72-89 11-28 (74)
11 1nrp_R Receptor based peptide 34.8 13 0.00044 19.8 0.8 12 84-95 13-24 (26)
12 1nro_R Receptor based peptide 29.6 16 0.00054 19.5 0.6 11 84-94 13-23 (27)
No 1
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=5.4e-61 Score=400.51 Aligned_cols=180 Identities=37% Similarity=0.797 Sum_probs=165.9
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCC
Q 029174 15 VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPE 94 (197)
Q Consensus 15 ~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~ 94 (197)
+......|||+++|||||+.+.+ .+..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus 30 ~~~~~~~hpL~~~Wt~W~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~ 108 (213)
T 1ap8_A 30 SAHFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEA 108 (213)
T ss_dssp CCCCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTT
T ss_pred CCCCCCccccCCcEEEEEEcCCc-ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCC
Confidence 44455789999999999999854 34578999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEcC-CCCchHHHHHHHHHHHhcCCCCCCC-ceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhC
Q 029174 95 CANGGKWSVTSN-RKANLDTMWLETMMALIGEQFDEAD-EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILD 172 (197)
Q Consensus 95 N~nGG~~~i~~~-~k~~~d~~We~lll~~Ige~~~~~~-~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~ 172 (197)
|++||+|+|++. +++.+|++|++|||++|||+|+..+ +|||||+|+|+++++|+||++++ +++.+..|++.|+++|+
T Consensus 109 N~~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~~~~Ig~~lk~~L~ 187 (213)
T 1ap8_A 109 NAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE-DKEPLLRIGGKFKQVLK 187 (213)
T ss_dssp TTTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS-CHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC-CHHHHHHHHHHHHHHhC
Confidence 999999999984 3468999999999999999998766 89999999999999999999998 88889999999999999
Q ss_pred CCC--ceeeEeCCccccCCCccceeEC
Q 029174 173 VTD--RITYSFHDDSRRDRSVKSRYSV 197 (197)
Q Consensus 173 l~~--~i~y~~H~~~~~~~~~~~~~~~ 197 (197)
+++ .++|++|+++.+ +.+|++|+|
T Consensus 188 l~~~~~i~y~~H~d~~~-~~~k~~~~~ 213 (213)
T 1ap8_A 188 LTDDGHLEFFPHSSANG-RHPQPSITL 213 (213)
T ss_dssp CCSSCCCEEECGGGGGC-CCSCCSEEC
T ss_pred CCCCCeEEEEEchhhhc-ccCccceEC
Confidence 976 799999999988 788999986
No 2
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=3.4e-61 Score=391.76 Aligned_cols=176 Identities=57% Similarity=1.098 Sum_probs=166.6
Q ss_pred CCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCCcE
Q 029174 21 PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGK 100 (197)
Q Consensus 21 ~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nGG~ 100 (197)
.|||+++|||||+.+..+.+..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||+
T Consensus 1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~ 80 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK 80 (177)
T ss_dssp CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence 59999999999999866556689999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCCceeeE
Q 029174 101 WSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYS 180 (197)
Q Consensus 101 ~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~~i~y~ 180 (197)
|+|++. |+.+|++|++|||++|||+|+.+++|||||+|+|.++++|+||++++++++.+..|++.++++|+++..++|+
T Consensus 81 w~i~~~-k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~~~y~ 159 (177)
T 2idr_A 81 WTISCG-RGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFI 159 (177)
T ss_dssp EEEEEC-TTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCSCCEEE
T ss_pred EEEEEC-cCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 999997 6789999999999999999998899999999999999999999999999999999999999999997689999
Q ss_pred eCCcccc-CCCccceeEC
Q 029174 181 FHDDSRR-DRSVKSRYSV 197 (197)
Q Consensus 181 ~H~~~~~-~~~~~~~~~~ 197 (197)
+|+++.+ .+++|++|+|
T Consensus 160 ~H~d~~~~~~~~k~~~~~ 177 (177)
T 2idr_A 160 VHEDAKRSDKGPKNRYTV 177 (177)
T ss_dssp EGGGGGSCSSSCCCSEEC
T ss_pred EchhhhhcCCCCccceEC
Confidence 9999988 5577899986
No 3
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=6.1e-60 Score=395.23 Aligned_cols=182 Identities=41% Similarity=0.828 Sum_probs=166.9
Q ss_pred cCCCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCC
Q 029174 13 AEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWED 92 (197)
Q Consensus 13 ~~~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WED 92 (197)
...|+....|||+++|||||+.+.+ ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+|||||
T Consensus 28 ~~~~e~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WED 104 (217)
T 1ipb_A 28 VANPEHYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWED 104 (217)
T ss_dssp CCCGGGTSCCEEEEEEEEEEECCCT---TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTS
T ss_pred ccCcccccCCCCCCeEEEEEEeCCc---ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccC
Confidence 4455666789999999999998753 5789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEcCCC---CchHHHHHHHHHHHhcCCC-CCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 029174 93 PECANGGKWSVTSNRK---ANLDTMWLETMMALIGEQF-DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWK 168 (197)
Q Consensus 93 p~N~nGG~~~i~~~~k---~~~d~~We~lll~~Ige~~-~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk 168 (197)
|+|++||+|+|++.+. ..+|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++.+..|++.|+
T Consensus 105 p~N~~GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk 184 (217)
T 1ipb_A 105 EKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYK 184 (217)
T ss_dssp TTTTTCEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999843 2469999999999999999 67889999999999999999999999999988999999999
Q ss_pred HHhCCCC--ceeeEeCCccccC--CCccceeEC
Q 029174 169 EILDVTD--RITYSFHDDSRRD--RSVKSRYSV 197 (197)
Q Consensus 169 ~~L~l~~--~i~y~~H~~~~~~--~~~~~~~~~ 197 (197)
++|++++ .++|++|+++.++ +.+|++|+|
T Consensus 185 ~~L~l~~~~~i~y~~H~d~~~~~~s~~~~~~~~ 217 (217)
T 1ipb_A 185 ERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 217 (217)
T ss_dssp HHHTCCTTCCCEEEEGGGCCCSTTCCCCCSEEC
T ss_pred HHhCCCCCCeEEEEEchHhhhccCCCCceeeeC
Confidence 9999987 7999999999874 456899986
No 4
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=1.6e-59 Score=385.38 Aligned_cols=174 Identities=40% Similarity=0.831 Sum_probs=159.1
Q ss_pred CCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCCcE
Q 029174 21 PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGK 100 (197)
Q Consensus 21 ~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nGG~ 100 (197)
.|||+++|||||+.+.+ ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+|+||||+|++||+
T Consensus 2 ~HpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGk 78 (189)
T 3m94_A 2 RHPLQCHWALWYLKADR---SKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGR 78 (189)
T ss_dssp CCEEEEEEEEEEECCCS---SSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEE
T ss_pred CCCCCCcEEEEEECCCC---ccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCCE
Confidence 69999999999997643 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC---CchHHHHHHHHHHHhcCCCC-CCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC-
Q 029174 101 WSVTSNRK---ANLDTMWLETMMALIGEQFD-EADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD- 175 (197)
Q Consensus 101 ~~i~~~~k---~~~d~~We~lll~~Ige~~~-~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~- 175 (197)
|+|++++. +.+|++|++|||++|||+|+ .+++|||||+|+|.++++|+||++++++++.+..|++.+|++|++++
T Consensus 79 w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~Ig~~lk~~L~l~~~ 158 (189)
T 3m94_A 79 WLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDT 158 (189)
T ss_dssp EEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTT
T ss_pred EEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCcCCC
Confidence 99999743 36899999999999999995 68999999999999999999999999999999999999999999987
Q ss_pred -ceeeEeCCcccc--CCCccceeEC
Q 029174 176 -RITYSFHDDSRR--DRSVKSRYSV 197 (197)
Q Consensus 176 -~i~y~~H~~~~~--~~~~~~~~~~ 197 (197)
.++|++|+++.+ ++.+|++|||
T Consensus 159 ~~i~y~~H~d~~~~~~s~~k~~~~v 183 (189)
T 3m94_A 159 EPIRYEVHKDSSVRTGSMVKPRIVI 183 (189)
T ss_dssp SCEEEEECC-----CCSCCCCSEEE
T ss_pred CEEEEEEchHhhhccCCCCceEEEE
Confidence 699999999986 6677999986
No 5
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=6.8e-60 Score=387.94 Aligned_cols=180 Identities=41% Similarity=0.836 Sum_probs=159.9
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCC
Q 029174 15 VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPE 94 (197)
Q Consensus 15 ~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~ 94 (197)
.|+....|||+++|||||+.+.+ ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus 3 ~~~~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~ 79 (190)
T 1l8b_A 3 NPEHYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEK 79 (190)
T ss_dssp ------CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTT
T ss_pred CccccccCCCCCeEEEEEEcCCC---ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCC
Confidence 45777899999999999998754 468999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCC---CchHHHHHHHHHHHhcCCC-CCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 029174 95 CANGGKWSVTSNRK---ANLDTMWLETMMALIGEQF-DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEI 170 (197)
Q Consensus 95 N~nGG~~~i~~~~k---~~~d~~We~lll~~Ige~~-~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~ 170 (197)
|++||+|+|++.++ ..+|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++.+..|++.++++
T Consensus 80 N~~GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~ 159 (190)
T 1l8b_A 80 NKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKER 159 (190)
T ss_dssp TTTCEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999742 3579999999999999999 5688999999999999999999999999999999999999999
Q ss_pred hCCCC--ceeeEeCCcccc--CCCccceeEC
Q 029174 171 LDVTD--RITYSFHDDSRR--DRSVKSRYSV 197 (197)
Q Consensus 171 L~l~~--~i~y~~H~~~~~--~~~~~~~~~~ 197 (197)
|++++ .++|++|+++.+ ++.+|++|+|
T Consensus 160 L~l~~~~~~~y~~H~d~~~~~~~~~~~~~~~ 190 (190)
T 1l8b_A 160 LGLPPKIVIGYQSHADTATKSGSTTKNRFVV 190 (190)
T ss_dssp HTCCTTSCCEEEEHHHHHTC-----CCSEEC
T ss_pred hCCCCCCeEEEEEcHHHHhccCCCCceeeeC
Confidence 99987 799999999987 4456899986
No 6
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=1.2e-59 Score=386.15 Aligned_cols=176 Identities=31% Similarity=0.718 Sum_probs=162.6
Q ss_pred CCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCC
Q 029174 19 SQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANG 98 (197)
Q Consensus 19 ~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nG 98 (197)
...|||+++|||||+.+.+ +.+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+|+||||.|++|
T Consensus 7 ~~~HpL~~~Wt~W~~~~~~---~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~~G 83 (189)
T 3hxi_A 7 EFPHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENG 83 (189)
T ss_dssp CCCCEEEEEEEEEEECCCT---TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHHTC
T ss_pred CccCCCCCeEEEEEECCCC---ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCCCC
Confidence 4579999999999998754 3689999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHHhcCCC-CCCCc--eeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC
Q 029174 99 GKWSVTSNRKANLDTMWLETMMALIGEQF-DEADE--ICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD 175 (197)
Q Consensus 99 G~~~i~~~~k~~~d~~We~lll~~Ige~~-~~~~~--I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~ 175 (197)
|+|+|++.++..+|++|++|||++|||+| +.+++ |||||+|+|+++++|+||++++++++.+..|++.++++|++++
T Consensus 84 Gkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~ 163 (189)
T 3hxi_A 84 GRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELED 163 (189)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHHHHHHHHHHHHHTCCS
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCcCC
Confidence 99999998544799999999999999999 55667 9999999999999999999999999999999999999999988
Q ss_pred --ceeeEeCCcccc--CCCccceeEC
Q 029174 176 --RITYSFHDDSRR--DRSVKSRYSV 197 (197)
Q Consensus 176 --~i~y~~H~~~~~--~~~~~~~~~~ 197 (197)
.++|++|+++++ ++.++++|||
T Consensus 164 ~~~i~y~~H~d~~~~~~s~~~~~~~~ 189 (189)
T 3hxi_A 164 TIYFQPVSDQRSQTRGSDICTGKYEI 189 (189)
T ss_dssp CCEEEEHHHHHHCCTTCC-CCCSEEC
T ss_pred CCeEEEEEchhhhhcCCCCCCceEeC
Confidence 589999999987 4446899997
No 7
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=3.8e-58 Score=378.92 Aligned_cols=173 Identities=34% Similarity=0.730 Sum_probs=160.0
Q ss_pred CCCCCCCCCceEEEEEcCCC--CccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCC
Q 029174 18 QSQPHKLERKWTFWFDNISK--PKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPEC 95 (197)
Q Consensus 18 ~~~~h~L~~~Wt~w~~~~~~--~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N 95 (197)
....|||+++|||||+.... +....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|
T Consensus 11 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N 90 (195)
T 2jgb_A 11 GPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDAN 90 (195)
T ss_dssp CTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTTT
T ss_pred CCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCCC
Confidence 44689999999999997532 2245789999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC
Q 029174 96 ANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD 175 (197)
Q Consensus 96 ~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~ 175 (197)
++||+|+|++. ++.+|++|++|||++|||+|+.+++|||||+|+|.++++|+||++++++++.+..|++.++++|++++
T Consensus 91 ~~GGkw~i~~~-k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~ 169 (195)
T 2jgb_A 91 KNGGKWIIRLR-KGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPP 169 (195)
T ss_dssp TTCEEEEEEEC-TTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHCCCCT
T ss_pred CCCcEEEEEeC-cccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999997 67899999999999999999989999999999999999999999999999999999999999999987
Q ss_pred --ceeeEeCCccccCCCc
Q 029174 176 --RITYSFHDDSRRDRSV 191 (197)
Q Consensus 176 --~i~y~~H~~~~~~~~~ 191 (197)
.++|++|+++.+++++
T Consensus 170 ~~~~~y~~H~d~~~~~~s 187 (195)
T 2jgb_A 170 NTIMEYKTHTDSIKMPGR 187 (195)
T ss_dssp TCCEEEEEHHHHHHCCC-
T ss_pred CCeEEEEEchHhhhcCCC
Confidence 6999999999884443
No 8
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-57 Score=388.29 Aligned_cols=182 Identities=36% Similarity=0.809 Sum_probs=163.5
Q ss_pred cCCCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCC
Q 029174 13 AEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWED 92 (197)
Q Consensus 13 ~~~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WED 92 (197)
..+++....|||+++|||||+.+.+ ..+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+|||
T Consensus 61 ~~~~~~~~kHpL~~~WtlW~~~~~~---~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED 137 (248)
T 4axg_A 61 AVRTEHLYKHPLMNVWTLWYLENDR---SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWED 137 (248)
T ss_dssp -----CCCCCEEEEEEEEEEESCSC---CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSS
T ss_pred ccCcccccCCCCCCeEEEEEeeCCC---ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCC
Confidence 4557777889999999999998744 4689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEcCCC--CchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 029174 93 PECANGGKWSVTSNRK--ANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEI 170 (197)
Q Consensus 93 p~N~nGG~~~i~~~~k--~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~ 170 (197)
|+|++||+|+|++.+. ..+|++|++||+++|||+|+.+++||||++|+|++.++|+||++++++++.+..|++.|+++
T Consensus 138 ~~N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~~~I~~~lk~~ 217 (248)
T 4axg_A 138 AANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDA 217 (248)
T ss_dssp TTTTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999742 35789999999999999999889999999999999999999999999999999999999999
Q ss_pred hCCCC--ceeeEeCCcccc--CCCccceeEC
Q 029174 171 LDVTD--RITYSFHDDSRR--DRSVKSRYSV 197 (197)
Q Consensus 171 L~l~~--~i~y~~H~~~~~--~~~~~~~~~~ 197 (197)
|+++. .++|+.|++++. ++.+|++|+|
T Consensus 218 L~l~~~~~i~yk~H~ds~~~~~s~~k~~y~v 248 (248)
T 4axg_A 218 LRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL 248 (248)
T ss_dssp TTCCTTSCEEEEETGGGCCCC--CCCCSEEC
T ss_pred hCCCCCCeEEEeehhhhhhccCCCCceeEeC
Confidence 99976 799999999975 6667999997
No 9
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=99.44 E-value=2.5e-13 Score=114.68 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=85.0
Q ss_pred CCCCCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCC---CcEEEEecCCCCCHHHHHHHHHHHHH
Q 029174 93 PECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQR---QDKLALWTKTAANEAAQMGIGKKWKE 169 (197)
Q Consensus 93 p~N~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~---~~~isIW~~~~~~~~~~~~I~~~lk~ 169 (197)
+.|..||||+|.+.+...+|++|+.+++++|+++ +||++|+.|.. ...|+||+.|..+.+.+.+|++.||+
T Consensus 121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~RV~~~Lre 194 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRA 194 (251)
T ss_dssp HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 5689999999999843789999999999999764 49999999986 79999999999999999999999999
Q ss_pred HhCCCCceeeEeCCccccCCCccceeE
Q 029174 170 ILDVTDRITYSFHDDSRRDRSVKSRYS 196 (197)
Q Consensus 170 ~L~l~~~i~y~~H~~~~~~~~~~~~~~ 196 (197)
|++...|.||.|.+...+...+++|.
T Consensus 195 -LGl~~~I~YK~D~~T~~Giy~~n~~~ 220 (251)
T 1ztp_A 195 -AGIKCLLTYKPDVYTYLGIYRANRWH 220 (251)
T ss_dssp -TTCCSCEEEEEHHHHHTTCCSSCSSC
T ss_pred -cCCCcceeeccchHhhcCCccCCcce
Confidence 99977899999999877666566654
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=50.91 E-value=5.4 Score=27.06 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.0
Q ss_pred CCCCcceeeeecCCCccC
Q 029174 72 RLPMNADFHLFKTGIEPK 89 (197)
Q Consensus 72 ~l~~~~~~~~FK~gI~P~ 89 (197)
+|..|+++|+||+|-.-+
T Consensus 11 ~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 11 DLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EBTTSCEEEEETTSCEEE
T ss_pred ecCCCcEEEEEcCCceeh
Confidence 578899999999997553
No 11
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=34.76 E-value=13 Score=19.76 Aligned_cols=12 Identities=50% Similarity=0.875 Sum_probs=9.0
Q ss_pred CCCccCCCCCCC
Q 029174 84 TGIEPKWEDPEC 95 (197)
Q Consensus 84 ~gI~P~WEDp~N 95 (197)
+..+|-|||...
T Consensus 13 dkyepfwedee~ 24 (26)
T 1nrp_R 13 DKYEPFWEDEEX 24 (26)
T ss_pred cccCcccccccc
Confidence 356899999753
No 12
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=29.64 E-value=16 Score=19.55 Aligned_cols=11 Identities=55% Similarity=0.960 Sum_probs=8.5
Q ss_pred CCCccCCCCCC
Q 029174 84 TGIEPKWEDPE 94 (197)
Q Consensus 84 ~gI~P~WEDp~ 94 (197)
+..+|-|||..
T Consensus 13 dkyepfwedee 23 (27)
T 1nro_R 13 DKYEPFWEDEE 23 (27)
T ss_pred cccCccccchh
Confidence 35689999974
Done!