BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029175
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis
thaliana GN=MBD4 PE=2 SV=1
Length = 186
Score = 217 bits (553), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 97/141 (68%), Positives = 117/141 (82%)
Query: 21 PIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDAS 80
P R IDTYAAQC+ C KWRVI+S EEYE+IR K+ E PF C +K G+SCE+PADI+YD+S
Sbjct: 21 PGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEPADIDYDSS 80
Query: 81 RVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSD 140
R WVID+PG+PKTP GFKRSLVLRKD+SKMD YY TPTGKKLR+ NE+A F+ ANPE+ +
Sbjct: 81 RTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFVEANPEFRN 140
Query: 141 VSLSDFTFSVPKVMDDTIPED 161
L DF F+VPKVM+DT+P D
Sbjct: 141 APLGDFNFTVPKVMEDTVPPD 161
>sp|Q5XEN5|MBD1_ARATH Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis
thaliana GN=MBD1 PE=2 SV=1
Length = 204
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 125/176 (71%), Gaps = 8/176 (4%)
Query: 10 TASKKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSC 69
T K + G P RSID +A QCEKC KWR I++ +EYE+IR ++ E PF C K GVSC
Sbjct: 37 TTIKVQKKAGTPGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSC 96
Query: 70 EDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVA 129
ED D+ YD+SR WVID+PG+P+TP GFKRSL+LRKD+SKMDAYYITPTGKKL++ NE+A
Sbjct: 97 EDVGDLNYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIA 156
Query: 130 GFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVVGD 185
F+ AN +Y L DF F+VPKVM++T+P ++ + R PK S+ V D
Sbjct: 157 AFIDANQDYKYALLGDFNFTVPKVMEETVPSGIL--------SDRTPKPSRKVTID 204
>sp|Q8LA53|MBD2_ARATH Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis
thaliana GN=MBD2 PE=1 SV=1
Length = 272
Score = 129 bits (325), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 99/175 (56%), Gaps = 12/175 (6%)
Query: 2 EDKQETLKTASKKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVC 61
+D +E + +P SI + QC CFKWR++ S ++YEEIR ++ E PF C
Sbjct: 33 DDTEEEVLPVQSQPLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFC 92
Query: 62 DR----KPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSK--MDAYYI 115
D KP +SC+ PADI D +R+W ID+P I + P G++R L +R + D YY+
Sbjct: 93 DTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYV 152
Query: 116 TPTGKKLRTLNEVAGFLAANPEY--SDVSLSDFTFSVPKVMDDTIPEDVVKKGSA 168
P+GKKLR+ EV +L N EY V LS F+F +PK + D D V+K A
Sbjct: 153 APSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD----DYVRKRPA 203
>sp|Q4PSK1|MBD3_ARATH Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis
thaliana GN=MBD3 PE=2 SV=1
Length = 163
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 10/130 (7%)
Query: 25 IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPAD--IEYDASRV 82
ID+YAAQC KC K R I S E+YEEIR K E F C R CE+P D + +D+ +
Sbjct: 9 IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTM 63
Query: 83 -WVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYY--ITPTGKKLRTLNEVAGFLAANPEYS 139
W D IPKTP G KR LV+R + K+D YY + P K+ +++ EVA F+ E+
Sbjct: 64 RWFQDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFK 123
Query: 140 DVSLSDFTFS 149
D++L + +F+
Sbjct: 124 DMTLEEVSFA 133
>sp|Q9FZP6|MBD12_ARATH Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis
thaliana GN=MBD12 PE=3 SV=1
Length = 155
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Query: 30 AQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDR----KPGVSCEDPADIEYDASRVWVI 85
QC C KWR+I S + Y I+ + PFVC P +SC P D W
Sbjct: 2 VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW-- 57
Query: 86 DRPGIPKTPGGFKRSLVLRKDFSKM-DAYYITPTGKKLRTLNEVAGFLAANPEY--SDVS 142
P IP P G+ RS+ +R + +K D YY P+G++LR+ EV FL +PEY V+
Sbjct: 58 --PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVN 115
Query: 143 LSDFTFSVPKVMDDT 157
S F+F +PK +DD
Sbjct: 116 RSQFSFQIPKPLDDN 130
>sp|Q9UBB5|MBD2_HUMAN Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1
SV=1
Length = 411
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 91 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 147
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 153 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NTVDLSSFD 207
Query: 148 FSVPKVM 154
F K+M
Sbjct: 208 FRTGKMM 214
>sp|Q9Z2E1|MBD2_MOUSE Methyl-CpG-binding domain protein 2 OS=Mus musculus GN=Mbd2 PE=2
SV=2
Length = 414
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 91 PKTPGGFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFT 147
P P G+K+ V+RK K D YY +P+GKK R+ ++A +L + V LS F
Sbjct: 156 PALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLG-----NAVDLSSFD 210
Query: 148 FSVPKVM 154
F K+M
Sbjct: 211 FRTGKMM 217
>sp|O95243|MBD4_HUMAN Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1
SV=1
Length = 580
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 94 PGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSV 150
P G++R + R K + D Y+I+P G K R+ + +A +L N E S + DF F+V
Sbjct: 87 PCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETS-LKPEDFDFTV 145
>sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus musculus GN=Mbd1 PE=1
SV=2
Length = 636
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 96 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF 146
G+KR RK F + D YY +PTG+K+R+ E+ +L D++L DF
Sbjct: 14 GWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPA---CDLTLFDF 64
>sp|Q9Z2D7|MBD4_MOUSE Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1
SV=1
Length = 554
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 89 GIPKTPGGFKRSLVLR---KDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSD 145
G P G++R + R K K D Y+I+P G K R+ +A +L N E + + D
Sbjct: 69 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGE-TFLKPED 127
Query: 146 FTFSV 150
F F+V
Sbjct: 128 FNFTV 132
>sp|Q9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 OS=Homo sapiens GN=MBD1 PE=1
SV=2
Length = 605
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 96 GFKRSLVLRKD---FSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDF-----T 147
G+KR V RK + D YY +PTG ++R+ E+ +L D++L DF
Sbjct: 14 GWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP---ACDLTLFDFKQGILC 70
Query: 148 FSVPKVMDDTIPEDVVKKGSASSDA-KRKPKTSKGVVGDGTARDE 191
+ PK + KK S + KR+ G V RDE
Sbjct: 71 YPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDE 115
>sp|Q32KD2|SETB1_DROME Histone-lysine N-methyltransferase eggless OS=Drosophila
melanogaster GN=egg PE=1 SV=1
Length = 1262
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 96 GFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMD 155
G++R LV+R+ +K Y P GK LR+L EV +L A +V DFT + + +
Sbjct: 831 GWER-LVMRQK-TKKSVVYKGPCGKSLRSLAEVHRYLRATENVLNVDNFDFTPDLKCLAE 888
Query: 156 DTIPEDVVK 164
+I +VK
Sbjct: 889 YSIDPSIVK 897
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1
PE=2 SV=2
Length = 984
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 28 YAAQCEKCFKWRVINSSEEYEE 49
+ QC+ C KWRV+ SS Y+E
Sbjct: 482 FIIQCDLCLKWRVLPSSTNYQE 503
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1
PE=2 SV=1
Length = 950
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 28 YAAQCEKCFKWRVINSSEEYEE 49
+ QC+ C KWRV+ SS Y+E
Sbjct: 481 FILQCDLCLKWRVLPSSSNYQE 502
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,952,016
Number of Sequences: 539616
Number of extensions: 3331712
Number of successful extensions: 5430
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5407
Number of HSP's gapped (non-prelim): 24
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)