Query 029175
Match_columns 197
No_of_seqs 117 out of 181
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 14:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ub1_A MECP2, attachment regio 99.9 4.8E-27 1.6E-31 188.4 11.4 113 72-194 13-133 (133)
2 3vxv_A Methyl-CPG-binding doma 99.9 5.1E-25 1.8E-29 158.9 6.3 58 93-151 6-66 (69)
3 3c2i_A Methyl-CPG-binding prot 99.9 7.3E-25 2.5E-29 167.7 7.3 75 81-156 8-89 (97)
4 2ky8_A Methyl-CPG-binding doma 99.9 2.7E-24 9.2E-29 156.1 6.7 60 90-154 10-72 (72)
5 1d9n_A Methyl-CPG-binding prot 99.9 5.4E-24 1.8E-28 155.9 5.3 62 90-156 8-72 (75)
6 2l7p_A Histone-lysine N-methyl 98.5 3.7E-08 1.3E-12 75.6 2.9 49 24-76 23-74 (100)
7 2e61_A Zinc finger CW-type PWW 97.9 6.2E-06 2.1E-10 59.2 2.9 50 22-76 11-65 (69)
8 4gut_A Lysine-specific histone 89.6 0.027 9.2E-07 54.5 -2.7 62 27-92 91-163 (776)
9 2law_A Yorkie homolog; YAP, SM 76.1 2.4 8.2E-05 26.1 3.0 23 90-117 4-26 (38)
10 1wr3_A Ubiquitin-protein ligas 67.6 5.3 0.00018 23.9 3.1 23 90-117 2-24 (36)
11 1yw5_A Peptidyl prolyl CIS/tra 67.3 4.6 0.00016 32.0 3.6 41 93-137 8-55 (177)
12 2jv4_A Peptidyl-prolyl CIS/tra 66.0 3.7 0.00013 27.5 2.3 39 92-134 7-52 (54)
13 1i5h_W Rnedd4, ubiquitin ligas 62.7 6.5 0.00022 25.7 3.0 27 88-119 7-33 (50)
14 2ysg_A Syntaxin-binding protei 61.0 8.5 0.00029 23.8 3.2 23 91-118 6-28 (40)
15 2djy_A SMAD ubiquitination reg 60.5 9.3 0.00032 24.1 3.4 24 90-118 5-28 (42)
16 2ho2_A Fe65 protein, amyloid b 59.0 5.6 0.00019 24.9 2.1 20 92-117 3-22 (38)
17 2kyk_A E3 ubiquitin-protein li 55.5 15 0.0005 22.4 3.6 24 90-118 4-27 (39)
18 2l4j_A YES-associated protein 50.2 14 0.00049 23.7 3.0 22 91-117 10-31 (46)
19 2kpz_A E3 ubiquitin-protein li 49.8 10 0.00036 24.4 2.4 24 90-118 10-33 (49)
20 2zaj_A Membrane-associated gua 47.7 22 0.00075 23.2 3.7 23 91-118 12-34 (49)
21 2ysf_A E3 ubiquitin-protein li 47.3 17 0.0006 22.4 3.0 23 91-118 6-28 (40)
22 2ysb_A Salvador homolog 1 prot 45.6 11 0.00036 24.7 1.9 21 93-118 12-32 (49)
23 1wr7_A NEDD4-2; all-beta, liga 45.3 14 0.00049 22.8 2.4 23 91-118 7-29 (41)
24 1wr4_A Ubiquitin-protein ligas 45.2 22 0.00075 20.9 3.1 24 91-119 3-26 (36)
25 2ez5_W Dnedd4, E3 ubiquitin-pr 44.5 11 0.00038 24.1 1.8 22 92-118 10-31 (46)
26 2ysh_A GAS-7, growth-arrest-sp 41.8 28 0.00097 21.1 3.4 22 91-117 6-27 (40)
27 1ymz_A CC45; artificial protei 41.3 18 0.00063 22.4 2.5 21 92-117 8-28 (43)
28 2ysd_A Membrane-associated gua 40.8 18 0.00061 24.4 2.5 24 90-118 12-35 (57)
29 2e45_A Fe65 protein, amyloid b 40.6 15 0.0005 25.3 2.0 25 91-121 18-43 (55)
30 2ku7_A MLL1 PHD3-CYP33 RRM chi 40.1 13 0.00045 26.5 1.9 33 30-62 3-39 (140)
31 2dmv_A Itchy homolog E3 ubiqui 40.1 26 0.0009 21.8 3.1 22 91-117 6-27 (43)
32 1e0m_A Wwprototype; SH3 protot 39.1 16 0.00055 21.7 1.9 21 92-117 3-23 (37)
33 1wmv_A WWOX, WW domain contain 38.8 20 0.00067 23.8 2.4 24 90-118 9-32 (54)
34 3tvt_B PINS, partner of inscut 34.8 21 0.0007 24.0 2.0 25 99-123 18-43 (50)
35 2dwv_A Salvador homolog 1 prot 34.6 47 0.0016 21.5 3.7 23 91-118 12-34 (49)
36 1tk7_A CG4244-PB; WW domain, n 32.9 38 0.0013 24.0 3.3 23 90-117 10-32 (88)
37 2yse_A Membrane-associated gua 30.0 43 0.0015 22.8 3.0 25 91-120 12-36 (60)
38 2l3a_A Uncharacterized protein 28.4 52 0.0018 24.3 3.4 39 92-130 20-66 (82)
39 2ysc_A Amyloid beta A4 precurs 28.3 33 0.0011 21.4 2.0 9 92-100 8-16 (39)
40 2kxq_A E3 ubiquitin-protein li 27.7 52 0.0018 23.3 3.3 23 92-119 9-31 (90)
41 2eom_A ZFP-95, zinc finger pro 27.5 26 0.00089 20.1 1.4 31 30-62 13-44 (46)
42 2eor_A Zinc finger protein 224 27.1 36 0.0012 19.2 2.0 31 30-62 13-44 (46)
43 2v0f_A Chromodomain-helicase-D 26.8 25 0.00085 26.1 1.5 21 118-138 31-51 (87)
44 3o7a_A PHD finger protein 13 v 26.3 22 0.00076 22.8 1.0 14 26-39 15-28 (52)
45 3tc5_A Peptidyl-prolyl CIS-tra 25.1 39 0.0013 26.6 2.4 22 92-117 9-30 (166)
46 1wee_A PHD finger family prote 24.7 24 0.00082 24.0 1.0 14 26-39 28-41 (72)
47 3lv0_A Extragenic suppressor p 24.6 52 0.0018 27.3 3.2 35 47-88 58-92 (267)
48 1fme_A FSD-EY peptide; beta-BE 24.1 40 0.0014 20.1 1.7 17 118-134 8-24 (28)
49 1wep_A PHF8; structural genomi 23.9 26 0.00089 24.2 1.1 36 26-72 24-63 (79)
50 3rsn_A SET1/ASH2 histone methy 23.6 22 0.00077 29.2 0.8 19 119-137 94-112 (177)
51 3o70_A PHD finger protein 13; 23.4 27 0.00091 24.0 1.0 14 26-39 30-43 (68)
52 3gox_A Restriction endonucleas 23.3 37 0.0013 28.7 2.0 70 27-107 102-175 (200)
53 2eow_A Zinc finger protein 347 22.6 44 0.0015 18.8 1.7 32 29-62 12-44 (46)
54 3kqi_A GRC5, PHD finger protei 22.5 28 0.00095 23.9 1.0 14 26-39 22-35 (75)
55 2o6k_A UPF0346 protein MW1311; 22.4 24 0.00081 25.9 0.6 27 120-147 35-61 (81)
56 1we9_A PHD finger family prote 22.2 29 0.001 22.8 1.0 14 26-39 19-32 (64)
57 2ytp_A Zinc finger protein 484 22.1 31 0.0011 19.6 1.0 31 30-62 13-44 (46)
58 2en9_A Zinc finger protein 28 21.3 48 0.0016 18.8 1.7 31 30-62 13-44 (46)
59 2em4_A Zinc finger protein 28 21.3 54 0.0019 18.6 2.0 31 30-62 13-44 (46)
60 2emy_A Zinc finger protein 268 21.1 64 0.0022 18.1 2.3 31 30-62 13-44 (46)
61 2emj_A Zinc finger protein 28 21.0 57 0.0019 18.5 2.0 31 30-62 13-44 (46)
62 3eaz_A Tyrosine-protein kinase 21.0 84 0.0029 22.0 3.3 25 112-137 65-89 (106)
63 2jmf_A E3 ubiquitin-protein li 20.9 82 0.0028 20.7 3.0 23 91-118 17-39 (53)
64 2emz_A ZFP-95, zinc finger pro 20.8 44 0.0015 19.0 1.5 31 30-62 13-44 (46)
65 1wem_A Death associated transc 20.8 32 0.0011 23.5 1.0 35 26-62 27-65 (76)
66 2yto_A Zinc finger protein 484 20.5 49 0.0017 18.8 1.7 31 30-62 13-44 (46)
67 3pm7_A Uncharacterized protein 20.2 87 0.003 23.0 3.2 32 92-123 18-52 (80)
68 2gsb_A RAS GTPase-activating p 20.1 98 0.0033 22.5 3.6 24 112-137 75-98 (119)
69 2fvz_A Inositol monophosphatas 20.0 53 0.0018 27.0 2.3 38 47-88 51-88 (273)
No 1
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=99.94 E-value=4.8e-27 Score=188.43 Aligned_cols=113 Identities=29% Similarity=0.453 Sum_probs=89.1
Q ss_pred CCCcccCCcceeeecCCC----CCCCCCCceEEEEEcccC---CcceEEEECCCCCcccchHHHHHhhhhCCCCCCCCcC
Q 029175 72 PADIEYDASRVWVIDRPG----IPKTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLS 144 (197)
Q Consensus 72 P~Di~~d~sr~W~iDkp~----iP~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le 144 (197)
|+.-.....|+.||+..+ .|.+|+||+|++++|++| +++|||||||+||+|||++||++||++|+++ +|+++
T Consensus 13 ~~~~~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~~~-~~~~e 91 (133)
T 1ub1_A 13 PEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDT-SLDPN 91 (133)
T ss_dssp CCCCSCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSCCC-SCCGG
T ss_pred cccccCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCCcc-CCCHh
Confidence 333444456787886555 355799999999999998 5899999999999999999999999999997 89999
Q ss_pred CceeeCCcccCCCCCCcceeccCCCcccccCCCccCCCC-CCCCcCCCCcc
Q 029175 145 DFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKTSKGVV-GDGTARDEGSV 194 (197)
Q Consensus 145 ~FsF~~pk~~~~~~p~~~~~k~~~~~~~~kk~k~~k~~~-g~~~~~~~~~~ 194 (197)
+|||++... .+++....+ ..++.|+.+..+ |+|++|++||.
T Consensus 92 ~FdF~~~gk---~~~s~R~~r------~~k~~k~~~~~~~~~~~~~~~~~~ 133 (133)
T 1ub1_A 92 DFDFTVTGR---GSPSRREQR------PPKKAKSPKSPGSGRGRGRPKGSG 133 (133)
T ss_dssp GCCCCCCCC---SCSSCCCCC------CCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred HCccccCCC---CCCcccccC------CCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999996422 234444422 356778877766 99999999984
No 2
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=99.91 E-value=5.1e-25 Score=158.86 Aligned_cols=58 Identities=34% Similarity=0.578 Sum_probs=55.3
Q ss_pred CCCCceEEEEEcccC---CcceEEEECCCCCcccchHHHHHhhhhCCCCCCCCcCCceeeCC
Q 029175 93 TPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVP 151 (197)
Q Consensus 93 ~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~FsF~~p 151 (197)
+|+||+|++++|++| +|.||||+||+||||||++||++||+.||++ +|++++|||++|
T Consensus 6 lp~GW~R~~~~R~~G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~-~l~~~~FdF~~p 66 (69)
T 3vxv_A 6 VPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGET-FLKPEDFNFTVL 66 (69)
T ss_dssp SCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHCCC-CCCGGGSCCCCC
T ss_pred CCCCCEEEEEEeccCCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCCC-CCCHHHcceeCC
Confidence 599999999999987 4899999999999999999999999999998 899999999987
No 3
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=99.91 E-value=7.3e-25 Score=167.71 Aligned_cols=75 Identities=31% Similarity=0.465 Sum_probs=59.7
Q ss_pred ceeeecCCC----CCCCCCCceEEEEEcccC---CcceEEEECCCCCcccchHHHHHhhhhCCCCCCCCcCCceeeCCcc
Q 029175 81 RVWVIDRPG----IPKTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKV 153 (197)
Q Consensus 81 r~W~iDkp~----iP~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~FsF~~pk~ 153 (197)
|+.+|+..+ .|.+|+||+|++++|++| +++|||||||+||+|||++||++||+.||++ +|++++|||+++++
T Consensus 8 rr~~i~~~~~~~~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g~~-~~~~~~FdF~~~~~ 86 (97)
T 3c2i_A 8 RRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGDT-SLDPNDFDFTVTGR 86 (97)
T ss_dssp -------CCCCCCCTTSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHTCC-SSCTTTCCCCSSCC
T ss_pred cceeEecCCcccCCCCCCCCCEEEEEEecCCCCCCcceEEEECCCCCEEECHHHHHHHHHHCCCC-CCCHhhccccCCCc
Confidence 444554433 256799999999999997 4899999999999999999999999999998 89999999999988
Q ss_pred cCC
Q 029175 154 MDD 156 (197)
Q Consensus 154 ~~~ 156 (197)
+++
T Consensus 87 ~~~ 89 (97)
T 3c2i_A 87 GSP 89 (97)
T ss_dssp ---
T ss_pred Ccc
Confidence 665
No 4
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=99.90 E-value=2.7e-24 Score=156.09 Aligned_cols=60 Identities=42% Similarity=0.712 Sum_probs=55.0
Q ss_pred CCCCCCCceEEEEEcccC---CcceEEEECCCCCcccchHHHHHhhhhCCCCCCCCcCCceeeCCccc
Q 029175 90 IPKTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVM 154 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~FsF~~pk~~ 154 (197)
+|.+|+||+|++++|++| +++||||++|+|++|||++||++||+. +|++++|||.++++|
T Consensus 10 ~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~-----~l~~~~FdF~~~~~~ 72 (72)
T 2ky8_A 10 CPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGN-----AVDLSCFDFRTGKMM 72 (72)
T ss_dssp CSSSCTTCEEEEEECCSSTTTTCEEEEEECTTCCEEESHHHHHHHHTT-----SSCCTTCBTTTTBC-
T ss_pred CCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCEeEcHHHHHHHHhc-----CCChhhcCCCCCCcC
Confidence 456699999999999988 589999999999999999999999998 789999999999875
No 5
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=99.89 E-value=5.4e-24 Score=155.90 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=56.3
Q ss_pred CCCCCCCceEEEEEcccC---CcceEEEECCCCCcccchHHHHHhhhhCCCCCCCCcCCceeeCCcccCC
Q 029175 90 IPKTPGGFKRSLVLRKDF---SKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLSDFTFSVPKVMDD 156 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~g---sK~DVYY~SP~GKKlRSk~EV~ryL~~npe~~~l~le~FsF~~pk~~~~ 156 (197)
.|.+|+||+|++++|++| +++|||||||+||+|||++||++||+. ++++++|||++++++.-
T Consensus 8 ~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~~-----~~~~~~FdF~~gk~~~~ 72 (75)
T 1d9n_A 8 CPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP-----ACDLTLFDFKQGILCYP 72 (75)
T ss_dssp CTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEECSTHHHHHHHCT-----TCCCTTCCTTTCCCCCS
T ss_pred CCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCeeecHHHHHHHhcc-----CCCccccCCCCCCccCC
Confidence 355599999999999998 589999999999999999999999975 78999999999998654
No 6
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=98.52 E-value=3.7e-08 Score=75.62 Aligned_cols=49 Identities=22% Similarity=0.627 Sum_probs=39.3
Q ss_pred ccceeeeecccccceeeeccHHHHHHHHhHhcCCCeeeccCCC---CCCCCCCCcc
Q 029175 24 SIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPG---VSCEDPADIE 76 (197)
Q Consensus 24 ~i~~ya~QC~~C~KwR~i~t~e~yEeiR~~~~~~pf~C~~~~~---~sC~dP~Di~ 76 (197)
.++.+.|||.+|+|||.+| .+.++++. ..++|+|...++ .+|+.|+++.
T Consensus 23 ~~~~~WVQCD~C~KWRrLP-~~~~~~~~---~pd~W~C~mN~D~~~nsCs~PEE~~ 74 (100)
T 2l7p_A 23 STESAWVRCDDCFKWRRIP-ASVVGSID---ESSRWICMNNSDKRFADCSKSQEMS 74 (100)
T ss_dssp SSSSEEEECTTTCCEEEEC-HHHHTTST---TSSCCCGGGSSCSSSCSTTSCCSSC
T ss_pred CCCCeEEeeCCCCccccCC-hhHccccC---CCCCceeCCCCCCCCCCCCCccCCC
Confidence 4578899999999999999 44444332 359999999776 8999999985
No 7
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=97.88 E-value=6.2e-06 Score=59.23 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=38.2
Q ss_pred ccccceeeeecc--cccceeeeccHHHHHHHHhHhcCCCeeeccCC---CCCCCCCCCcc
Q 029175 22 IRSIDTYAAQCE--KCFKWRVINSSEEYEEIRCKIAEIPFVCDRKP---GVSCEDPADIE 76 (197)
Q Consensus 22 ~~~i~~ya~QC~--~C~KwR~i~t~e~yEeiR~~~~~~pf~C~~~~---~~sC~dP~Di~ 76 (197)
......+.|||. .|.|||.+|-.... ..+-+.|+|.-.+ -.+|+.|++..
T Consensus 11 ~~~~~~~WVQCd~p~C~KWR~LP~~~~~-----~~lpd~W~C~mN~d~~~~~Cs~pEE~~ 65 (69)
T 2e61_A 11 GFGQCLVWVQCSFPNCGKWRRLCGNIDP-----SVLPDNWSCDQNTDVQYNRCDIPEETW 65 (69)
T ss_dssp SCCCCCCEEECSSTTTCCEEECCSSCCT-----TTSCTTCCGGGCSCGGGCSSSSCCCCC
T ss_pred CCCCCCeEEEeCccccCcccCCcccccc-----ccCCCcCEeCCCCCCccCCCCCCcccC
Confidence 345578899999 99999999954322 2356899999765 46899999875
No 8
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=89.57 E-value=0.027 Score=54.50 Aligned_cols=62 Identities=27% Similarity=0.574 Sum_probs=40.0
Q ss_pred eeeeecc--cccceeeeccHHHHHHHHhHhcCCCeeeccCC--------CCCCCCCCCcccCC-cceeeecCCCCCC
Q 029175 27 TYAAQCE--KCFKWRVINSSEEYEEIRCKIAEIPFVCDRKP--------GVSCEDPADIEYDA-SRVWVIDRPGIPK 92 (197)
Q Consensus 27 ~ya~QC~--~C~KwR~i~t~e~yEeiR~~~~~~pf~C~~~~--------~~sC~dP~Di~~d~-sr~W~iDkp~iP~ 92 (197)
-|.+||. .|.|||.+++. +.|-..+ -+-|.|...+ .-.|..|+|.---. +..|-+....+|+
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~---~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKE---IQLTPQI-AKTYRCGMKPNTAIKPETSDHCSLPEDLRVLEVSNHWWYSMLILPP 163 (776)
T ss_dssp CCEEECCCTTTCCEEECCTT---CCCCHHH-HHHCCTTCCCC-------CCGGGSCCCHHHHHTTSTTTTTTCCSCC
T ss_pred cHhhhcCcccccchhhCCCc---CCCChhh-hheeeccCccCcccccccCCCCCCCcccchhhccchHHHHhhcCCH
Confidence 6899999 99999999744 2332332 2458898654 45688899963222 4455555555543
No 9
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=76.07 E-value=2.4 Score=26.14 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=16.3
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECC
Q 029175 90 IPKTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
...+|.||+..+- ..+.+||+.-
T Consensus 4 ~~~LP~gWe~~~~-----~~G~~Yy~nh 26 (38)
T 2law_A 4 EGPLPDGWEQAMT-----QDGEIYYINH 26 (38)
T ss_dssp -CCCSSSCCEEEE-----TTTEEEEEET
T ss_pred cCCCCCCcEEEEC-----CCCCEEEEEC
Confidence 3456999987654 3578999975
No 10
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=67.63 E-value=5.3 Score=23.95 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=16.1
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECC
Q 029175 90 IPKTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
.+.+|.||+... + ..+.+||+.-
T Consensus 2 ~~~LP~GWe~~~----d-~~G~~Yy~n~ 24 (36)
T 1wr3_A 2 SPPLPPGWEEKV----D-NLGRTYYVNH 24 (36)
T ss_dssp CSCSCTTEEEEE----C-SSSCEEEEET
T ss_pred CCCCCCCCEEEE----C-CCCCEEEEEC
Confidence 355799997653 2 3578999875
No 11
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=67.27 E-value=4.6 Score=31.95 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=30.2
Q ss_pred CCCCceEEEEEcccCCcceEEEECCCCCccc-------chHHHHHhhhhCCC
Q 029175 93 TPGGFKRSLVLRKDFSKMDAYYITPTGKKLR-------TLNEVAGFLAANPE 137 (197)
Q Consensus 93 ~P~GWkRevv~R~~gsK~DVYY~SP~GKKlR-------Sk~EV~ryL~~npe 137 (197)
+|+||.. |.+-++...||+.+--+.++ +-.||.+|+..|..
T Consensus 8 lp~~w~~----~~s~s~~~~Yy~~~~~~~~~~~~~~~vs~~ei~~yy~~~~~ 55 (177)
T 1yw5_A 8 LPPNWTI----RVSRSHNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAKFKN 55 (177)
T ss_dssp CCTTEEE----EECSSTTCEEEEETTTCCEESSCCTTCCHHHHHHHHHHHHH
T ss_pred CCchHHH----HhcccCCchhhhhHHHhhHhhcCcccCCHHHHHHHHHHhHh
Confidence 5999953 33445778999988655554 67899999998754
No 12
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=65.97 E-value=3.7 Score=27.52 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=24.3
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC-CCCc------ccchHHHHHhhhh
Q 029175 92 KTPGGFKRSLVLRKDFSKMDAYYITP-TGKK------LRTLNEVAGFLAA 134 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gsK~DVYY~SP-~GKK------lRSk~EV~ryL~~ 134 (197)
.+|+||+ .|.+-+.+.+||+.. +|.. ..+..+|..|+.+
T Consensus 7 ~LP~GW~----~~~~~~~Gr~YY~N~~T~~sqWe~P~~~~~~~l~~~~~~ 52 (54)
T 2jv4_A 7 GLPAGWE----VRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMYMAT 52 (54)
T ss_dssp CCCSSCC----EEECSSSSCEEEEETTTTEEESSCCTTSCHHHHHHHHCS
T ss_pred CCCCCcE----EEEECCCCCEEEEECCCCcEEecCCCCccHHHHHHHHHh
Confidence 3599997 344545678899874 3321 2356677777665
No 13
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=62.65 E-value=6.5 Score=25.73 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=17.9
Q ss_pred CCCCCCCCCceEEEEEcccCCcceEEEECCCC
Q 029175 88 PGIPKTPGGFKRSLVLRKDFSKMDAYYITPTG 119 (197)
Q Consensus 88 p~iP~~P~GWkRevv~R~~gsK~DVYY~SP~G 119 (197)
.....+|.||+..+ + ..+.+||+.-.-
T Consensus 7 ~~~~~LP~gWe~~~----~-~~Gr~Yy~nh~t 33 (50)
T 1i5h_W 7 NDLGPLPPGWEERT----H-TDGRVFFINHNI 33 (50)
T ss_dssp SCCSSCSTTEEEEE----C-TTSCEEEEETTT
T ss_pred ccCCCCCcCcEEEE----c-CCCCEEEEECCC
Confidence 33455799997653 2 457899997543
No 14
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=60.95 E-value=8.5 Score=23.83 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=15.8
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
..+|.||+..+ + ..+.+|||.-.
T Consensus 6 ~~LP~gWe~~~----~-~~Gr~Yy~nh~ 28 (40)
T 2ysg_A 6 SGLPYGWEEAY----T-ADGIKYFINHV 28 (40)
T ss_dssp SCCCTTEEEEE----C-SSSCEEEEESS
T ss_pred CCCCCCcEEEE----c-CCCCEEEEECC
Confidence 45699996553 2 46789998753
No 15
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=60.48 E-value=9.3 Score=24.11 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=16.6
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 90 IPKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
...+|.||+..+ + ..+.+|||.-.
T Consensus 5 ~~~LP~GWe~~~----~-~~G~~Yy~nh~ 28 (42)
T 2djy_A 5 SGPLPPGWEIRN----T-ATGRVYFVDHN 28 (42)
T ss_dssp CSCCCSSEEEEE----C-SSSCEEEEETT
T ss_pred cCCCCcCcEEEE----C-CCCCEEEEECC
Confidence 445699997653 2 46789998753
No 16
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=58.96 E-value=5.6 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=13.2
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC
Q 029175 92 KTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
.+|.||++.+- . .+ +||+.-
T Consensus 3 ~LP~GWe~~~d----~-~g-~YY~n~ 22 (38)
T 2ho2_A 3 DLPAGWMRVQD----T-SG-TYYWHI 22 (38)
T ss_dssp CSCTTEEEEEC----S-SC-EEEEET
T ss_pred cCCCCceEEEe----C-CC-CEEEec
Confidence 46999976543 1 23 899863
No 17
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=55.52 E-value=15 Score=22.40 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=16.8
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 90 IPKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
.+.+|.||+..+ + ..+.+||+.-.
T Consensus 4 ~~~LP~gWe~~~----d-~~G~~YY~n~~ 27 (39)
T 2kyk_A 4 MGPLPPGWERRV----D-NMGRIYYVDHF 27 (39)
T ss_dssp SCCCCSSCEEEE----C-TTSCEEEECSS
T ss_pred cCCCCCCcEEEE----c-CCCCEEEEECC
Confidence 456799997653 2 35789999854
No 18
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=50.21 E-value=14 Score=23.66 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=15.6
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
..+|.||+..+- ..+.+|||.-
T Consensus 10 ~~LP~gWe~~~~-----~~G~~Yyinh 31 (46)
T 2l4j_A 10 GPLPEGWEQAIT-----PEGEIYYINH 31 (46)
T ss_dssp SCCCTTCEEEEC-----TTSCEEEEET
T ss_pred CCCCcCceeEEC-----CCCCEEEEEC
Confidence 346999976632 3578999975
No 19
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=49.76 E-value=10 Score=24.45 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=15.6
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 90 IPKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
...+|.||+..+- ..+.+|||.-.
T Consensus 10 ~~~LP~gWe~~~~-----~~G~~Yy~nh~ 33 (49)
T 2kpz_A 10 QGFLPKGWEVRHA-----PNGRPFFIDHN 33 (49)
T ss_dssp --CCCTTEEEEEC-----TTSCEEEEETT
T ss_pred CCCCCCCcEEEEC-----CCCCEEEEECC
Confidence 4556999976532 35789998753
No 20
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=47.70 E-value=22 Score=23.22 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=15.5
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
+.+|.||+..+- ...-+||+.-.
T Consensus 12 ~~LP~GWe~~~d-----~~Gr~YYvnh~ 34 (49)
T 2zaj_A 12 LELPAGWEKIED-----PVYGIYYVDHI 34 (49)
T ss_dssp SCCCTTEEEEEE-----TTTEEEEEETT
T ss_pred CCCCcCceEEEc-----CCCCEEEEeCC
Confidence 456999976643 23568999753
No 21
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=47.26 E-value=17 Score=22.40 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
..+|.||+..+ + ..+.+|||.-.
T Consensus 6 ~~LP~gWe~~~----~-~~G~~Yy~nh~ 28 (40)
T 2ysf_A 6 SGLPEGWEMRF----T-VDGIPYFVDHN 28 (40)
T ss_dssp CCCCSSEEEEE----C-TTCCEEEEETT
T ss_pred CCCCcCcEEEE----c-CCCCEEEEECC
Confidence 44699997653 2 35789998753
No 22
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=45.57 E-value=11 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=14.8
Q ss_pred CCCCceEEEEEcccCCcceEEEECCC
Q 029175 93 TPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 93 ~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
+|.||+..+- ..+.+|||.-.
T Consensus 12 LP~gWe~~~~-----~~Gr~Yy~nh~ 32 (49)
T 2ysb_A 12 LPPGWSVDWT-----MRGRKYYIDHN 32 (49)
T ss_dssp CCTTEEEEEC-----SSSCEEEEETT
T ss_pred CCCCceEEEC-----CCCCEEEEEcC
Confidence 5999976643 25789999753
No 23
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=45.32 E-value=14 Score=22.83 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=15.8
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
+.+|.||+..+- ..+.+|||.-.
T Consensus 7 ~~LP~gWe~~~~-----~~G~~Yy~n~~ 29 (41)
T 1wr7_A 7 SFLPPGWEMRIA-----PNGRPFFIDHN 29 (41)
T ss_dssp CSSCTTEEEEEC-----TTSCEEEEETT
T ss_pred CCCCCCcEEEEc-----CCCCEEEEECC
Confidence 456999976542 24789999753
No 24
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=45.22 E-value=22 Score=20.87 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=15.6
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCCC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITPTG 119 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP~G 119 (197)
+.+|.||+... + ..+.+||+.-..
T Consensus 3 ~~LP~gWe~~~----d-~~g~~Yy~n~~t 26 (36)
T 1wr4_A 3 PGLPSGWEERK----D-AKGRTYYVNHNN 26 (36)
T ss_dssp TTCCTTEEEEE----C-SSSCEEEEETTT
T ss_pred CCCCCCCEEEE----C-CCCCEEEEECCC
Confidence 34699996542 2 257789987543
No 25
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=44.46 E-value=11 Score=24.10 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=15.4
Q ss_pred CCCCCceEEEEEcccCCcceEEEECCC
Q 029175 92 KTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
.+|.||+..+- ..+.+|||.-.
T Consensus 10 ~LP~gWe~~~~-----~~Gr~Yyinh~ 31 (46)
T 2ez5_W 10 PLPPRWSMQVA-----PNGRTFFIDHA 31 (46)
T ss_dssp CCCTTEEEEEC-----TTSSEEEEETT
T ss_pred CCCcCcEEEEc-----CCCCEEEEECC
Confidence 45999976632 25789998753
No 26
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=41.82 E-value=28 Score=21.08 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=14.8
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
+.+|.||+..+- ..+.+||+.-
T Consensus 6 ~~LP~gW~~~~d-----~~Gr~YY~n~ 27 (40)
T 2ysh_A 6 SGLPPGWQSYLS-----PQGRRYYVNT 27 (40)
T ss_dssp SSCCTTCEEEEC-----TTSCEEEECS
T ss_pred CCCCCCceEEEC-----CCCCEEEEEC
Confidence 456999954332 2468999986
No 27
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=41.34 E-value=18 Score=22.36 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=14.3
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC
Q 029175 92 KTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
.+|.||+... + ..+.+||+.-
T Consensus 8 ~LP~gW~~~~----~-~~Gr~YY~n~ 28 (43)
T 1ymz_A 8 PLPPGWERRT----D-VEGKVYYFNV 28 (43)
T ss_dssp CCCSSEEEEE----C-TTSCEEEEET
T ss_pred CCCCCCEEEE----C-CCCCEEEEEC
Confidence 4589996543 2 2578999875
No 28
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=40.83 E-value=18 Score=24.36 Aligned_cols=24 Identities=13% Similarity=0.380 Sum_probs=16.3
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 90 IPKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
...+|.||+..+- ..+.+|||.-.
T Consensus 12 ~~~LP~GWe~~~~-----~~Gr~Yyinh~ 35 (57)
T 2ysd_A 12 LGPLPENWEMAYT-----ENGEVYFIDHN 35 (57)
T ss_dssp CCSCCSSEEEEEC-----SSCCEEEEETT
T ss_pred CCCCCcCcEEEEC-----CCCCEEEEECC
Confidence 3456999976532 25789999743
No 29
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=40.60 E-value=15 Score=25.34 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=15.0
Q ss_pred CCCCCCceEEEEEcccCCcceEEEEC-CCCCc
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYIT-PTGKK 121 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~S-P~GKK 121 (197)
+.+|+||++.. +.+ + +||+. ++|..
T Consensus 18 ~~LPpGW~~~~----D~s-G-tYY~h~~T~tT 43 (55)
T 2e45_A 18 SDLPAGWMRVQ----DTS-G-TYYWHIPTGTT 43 (55)
T ss_dssp SCCCTTEEEEE----ETT-E-EEEEETTTCCE
T ss_pred CCCCCCCeEee----cCC-C-CEEEEcCCCCC
Confidence 45699996643 222 3 77765 56654
No 30
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=40.15 E-value=13 Score=26.48 Aligned_cols=33 Identities=33% Similarity=0.698 Sum_probs=22.7
Q ss_pred eeccccccee---eeccHHHHHHHHhHhc-CCCeeec
Q 029175 30 AQCEKCFKWR---VINSSEEYEEIRCKIA-EIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR---~i~t~e~yEeiR~~~~-~~pf~C~ 62 (197)
+||..|..|= -+--.++|.++-.++. +..|.|.
T Consensus 3 i~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~ 39 (140)
T 2ku7_A 3 MQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV 39 (140)
T ss_dssp CCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSS
T ss_pred cccccCCCccCCcccccCHHHHHHHhhccccceeeCc
Confidence 7999999993 2333466776666655 4568886
No 31
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.06 E-value=26 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=15.6
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
+.+|.||+..+- ..+.+||+.-
T Consensus 6 ~~LP~GWe~~~d-----~~Gr~YY~n~ 27 (43)
T 2dmv_A 6 SGLPPGWEQRVD-----QHGRVYYVDH 27 (43)
T ss_dssp CSCCTTEEEEEC-----TTSCEEEEET
T ss_pred CCCCCCceEEEC-----CCCCEEEEEC
Confidence 456999976543 2578999875
No 32
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=39.11 E-value=16 Score=21.68 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=14.1
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC
Q 029175 92 KTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
.+|.||+..+ + ..+.+||+.-
T Consensus 3 ~LP~gW~~~~----~-~~G~~Yy~n~ 23 (37)
T 1e0m_A 3 GLPPGWDEYK----T-HNGKTYYYNH 23 (37)
T ss_dssp CSCTTEEEEE----C-SSCCEEEEET
T ss_pred CCCCCcEEEE----C-CCCCEEEEEC
Confidence 3599997542 2 2467899874
No 33
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=38.80 E-value=20 Score=23.82 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=16.5
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 90 IPKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
...+|.||+..+- ..+.+|||.-.
T Consensus 9 ~~~LP~GWe~~~~-----~~G~~Yyinh~ 32 (54)
T 1wmv_A 9 AGDLPYGWEQETD-----ENGQVFFVDHI 32 (54)
T ss_dssp SSCSCTTEEEEEC-----TTSCEEEEESS
T ss_pred CCCCCcCcEEEEC-----CCCCEEEEeCC
Confidence 3456999975532 35789999754
No 34
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=34.82 E-value=21 Score=23.97 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=19.1
Q ss_pred EEEEEcccC-CcceEEEECCCCCccc
Q 029175 99 RSLVLRKDF-SKMDAYYITPTGKKLR 123 (197)
Q Consensus 99 Revv~R~~g-sK~DVYY~SP~GKKlR 123 (197)
|-|++|+-. ...|..-|+|+||+|-
T Consensus 18 rmvrvrrqsmeqldlikitpdgkrlq 43 (50)
T 3tvt_B 18 RMVRVRRQDMEQLDLIKITPDGKRMQ 43 (50)
T ss_pred eEEEeeecchhhcCeEEecCCchhhh
Confidence 556666543 5799999999999974
No 35
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.63 E-value=47 Score=21.51 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=15.1
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
+.+|.||+...- ..+.+||+.-.
T Consensus 12 ~~LP~GWe~~~d-----~~g~~YYvnh~ 34 (49)
T 2dwv_A 12 EGLPPGWERVES-----SEFGTYYVDHT 34 (49)
T ss_dssp SCCCTTEEEEEE-----TTTEEEEEETT
T ss_pred CCCCcCcEEEEC-----CCCCEEEEECC
Confidence 346999976532 23469999753
No 36
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=32.93 E-value=38 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=15.5
Q ss_pred CCCCCCCceEEEEEcccCCcceEEEECC
Q 029175 90 IPKTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 90 iP~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
...+|.||+..+- ..+-+|||.-
T Consensus 10 ~~~LP~gWe~~~~-----~~Gr~Yy~n~ 32 (88)
T 1tk7_A 10 LGPLPDGWEKKIQ-----SDNRVYFVNH 32 (88)
T ss_dssp TSSSSSSCCEEEE-----TTTEEEEEET
T ss_pred cCCCCCCcEEEEC-----CCCCEEEEEC
Confidence 3456999976643 3467899864
No 37
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.03 E-value=43 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=16.7
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCCCC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITPTGK 120 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP~GK 120 (197)
..+|.||+..+ + ..+-+||+.-.-+
T Consensus 12 ~~LP~GWE~~~----d-~~Gr~YYvnh~tk 36 (60)
T 2yse_A 12 LELPAGWEKIE----D-PVYGIYYVDHINR 36 (60)
T ss_dssp SSCCSSEEEEE----C-SSSCEEEEETTTT
T ss_pred CCCCCCcEEEE----C-CCCCEEEEeCCCC
Confidence 44699997653 2 3467999986443
No 38
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=28.43 E-value=52 Score=24.28 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=30.7
Q ss_pred CCCCCceEEEEEcccCC---cceEEEECCCCCccc-----chHHHHH
Q 029175 92 KTPGGFKRSLVLRKDFS---KMDAYYITPTGKKLR-----TLNEVAG 130 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gs---K~DVYY~SP~GKKlR-----Sk~EV~r 130 (197)
..+.||.+||-+-+.++ |.|+-=.+|+..|+- +..|+..
T Consensus 20 e~~kGW~KELNlVSWNg~~pKyDIR~Wspdh~kMGKGITLT~eE~~~ 66 (82)
T 2l3a_A 20 ENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQT 66 (82)
T ss_dssp EETTTEEEEEEEEEESSSCEEEEEEEECSTTCCCCCCEEECHHHHHH
T ss_pred cCCCCceEEEEEEeECCCCCCccccccCcchhhccCcccccHHHHHH
Confidence 34899999999998876 799999999887763 5555544
No 39
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=28.32 E-value=33 Score=21.39 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=6.9
Q ss_pred CCCCCceEE
Q 029175 92 KTPGGFKRS 100 (197)
Q Consensus 92 ~~P~GWkRe 100 (197)
.+|+||+..
T Consensus 8 ~LP~GWe~~ 16 (39)
T 2ysc_A 8 GLPPGWRKI 16 (39)
T ss_dssp CCCTTEEEE
T ss_pred CCCCCcEEE
Confidence 469999765
No 40
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=27.71 E-value=52 Score=23.31 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=15.5
Q ss_pred CCCCCceEEEEEcccCCcceEEEECCCC
Q 029175 92 KTPGGFKRSLVLRKDFSKMDAYYITPTG 119 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gsK~DVYY~SP~G 119 (197)
.+|.||...+- ..+.+|||...-
T Consensus 9 ~LP~gWe~~~~-----~~Gr~YY~n~~t 31 (90)
T 2kxq_A 9 DLPEGYEQRTT-----QQGQVYFLHTQT 31 (90)
T ss_dssp SCCSSCEEEEE-----TTTEEEEEETTT
T ss_pred CCCCCcEEEEC-----CCCCEEEEECCC
Confidence 45999965443 256799997643
No 41
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.48 E-value=26 Score=20.10 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=19.7
Q ss_pred eecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
.+|..|.|.=. ++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eom_A 13 HRCSDCGKFFL--QASNFIQHRRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSSSCCCCS--SHHHHHHHHHHHSSCCCSSCC
T ss_pred cCCCCCCCeeC--ChHHHHHHHHHhCCCCCCCCC
Confidence 57888876532 223322 25667789999996
No 42
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.13 E-value=36 Score=19.22 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred eecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
.+|..|.|.=. ++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~kp~~C~ 44 (46)
T 2eor_A 13 YNCEECGKAFI--HDSQLQEHQRIHTGEKPSGPS 44 (46)
T ss_dssp EECTTTCCEES--SHHHHHHHHHHHHSCCCSSST
T ss_pred ccCCCCCCCcC--CHHHHHHHHHhcCCCCCCCCC
Confidence 57888877533 233322 35667789999996
No 43
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=26.84 E-value=25 Score=26.11 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=18.1
Q ss_pred CCCcccchHHHHHhhhhCCCC
Q 029175 118 TGKKLRTLNEVAGFLAANPEY 138 (197)
Q Consensus 118 ~GKKlRSk~EV~ryL~~npe~ 138 (197)
.|.++=...+|.+||..||.|
T Consensus 31 ~G~~AP~l~~L~~WL~~nP~y 51 (87)
T 2v0f_A 31 GGAMAPPMKDLPRWLEENPEF 51 (87)
T ss_dssp CSSSSCBGGGHHHHHHHCTTE
T ss_pred cCCcCchhHHHHHHHHHCCCc
Confidence 356677889999999999999
No 44
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=26.32 E-value=22 Score=22.78 Aligned_cols=14 Identities=21% Similarity=0.807 Sum_probs=12.4
Q ss_pred ceeeeeccccccee
Q 029175 26 DTYAAQCEKCFKWR 39 (197)
Q Consensus 26 ~~ya~QC~~C~KwR 39 (197)
|..-+||..|..|-
T Consensus 15 ~~~MI~Cd~C~~W~ 28 (52)
T 3o7a_A 15 GRPMIECNECHTWI 28 (52)
T ss_dssp TCCEEECTTTCCEE
T ss_pred CCCEEEcCCCCccc
Confidence 66889999999994
No 45
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=25.09 E-value=39 Score=26.60 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=14.5
Q ss_pred CCCCCceEEEEEcccCCcceEEEECC
Q 029175 92 KTPGGFKRSLVLRKDFSKMDAYYITP 117 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gsK~DVYY~SP 117 (197)
.+|+||+. |.+-+.+-+||+.-
T Consensus 9 ~LP~gWe~----~~~~~~g~~yy~n~ 30 (166)
T 3tc5_A 9 KLPPGWEK----AMSRSSGRVYYFNH 30 (166)
T ss_dssp -CCTTEEE----EECTTTCCEEEEET
T ss_pred CCCCCceE----EEcCCCCCEEEEEC
Confidence 45999953 33434678899874
No 46
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.73 E-value=24 Score=24.00 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=11.8
Q ss_pred ceeeeeccccccee
Q 029175 26 DTYAAQCEKCFKWR 39 (197)
Q Consensus 26 ~~ya~QC~~C~KwR 39 (197)
|.+-|||..|..|-
T Consensus 28 g~~mI~Cd~C~~W~ 41 (72)
T 1wee_A 28 GERMLACDGCGVWH 41 (72)
T ss_dssp SSCEEECSSSCEEE
T ss_pred CCcEEECCCCCCcc
Confidence 34789999999994
No 47
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural genomics center for infectious disease, ssgcid, CAT scratch disease; 1.85A {Bartonella henselae} SCOP: e.7.1.0 PDB: 3luz_A
Probab=24.57 E-value=52 Score=27.30 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHhHhcCCCeeeccCCCCCCCCCCCcccCCcceeeecCC
Q 029175 47 YEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWVIDRP 88 (197)
Q Consensus 47 yEeiR~~~~~~pf~C~~~~~~sC~dP~Di~~d~sr~W~iDkp 88 (197)
.+.|++.+.+.+|.-|-.. .. ...++.++|+||+-
T Consensus 58 ~~~L~~~~P~~~ilgEE~~----~~---~~~~~~~~WiIDPI 92 (267)
T 3lv0_A 58 FNELSKARPKFGFLMEESE----EI---IGEDSQHRFIVDPL 92 (267)
T ss_dssp HHHHHHHCTTSEEEETTSC----CB---CCSSTTEEEEEEEE
T ss_pred HHHHHHHCCCCEEEeCCCC----CC---CCCCCCCEEEEecC
Confidence 4678888888999888321 11 12346789999973
No 48
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=24.11 E-value=40 Score=20.13 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCCcccchHHHHHhhhh
Q 029175 118 TGKKLRTLNEVAGFLAA 134 (197)
Q Consensus 118 ~GKKlRSk~EV~ryL~~ 134 (197)
.|+.||.-.||..|+++
T Consensus 8 kgrtfrnekelrdfiek 24 (28)
T 1fme_A 8 KGRTFRNEKELRDFIEK 24 (28)
T ss_dssp SSCEECCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHH
Confidence 68999999999999987
No 49
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.91 E-value=26 Score=24.22 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=22.6
Q ss_pred ceeeeecccccceeeec----cHHHHHHHHhHhcCCCeeeccCCCCCCCCC
Q 029175 26 DTYAAQCEKCFKWRVIN----SSEEYEEIRCKIAEIPFVCDRKPGVSCEDP 72 (197)
Q Consensus 26 ~~ya~QC~~C~KwR~i~----t~e~yEeiR~~~~~~pf~C~~~~~~sC~dP 72 (197)
+..-|||..|..|=-.. +.++.+ .-+.|+|. .|...
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~------~~~~~~C~-----~C~~~ 63 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIEEENAV------DIDIYHCP-----DCEAV 63 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCCHHHHT------TCSBBCCT-----TTTTT
T ss_pred CCceEEcCCCCCcEEeeecCccccccc------CCCeEECC-----Ccccc
Confidence 56789999999994321 222221 13689998 67543
No 50
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=23.58 E-value=22 Score=29.23 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=14.9
Q ss_pred CCcccchHHHHHhhhhCCC
Q 029175 119 GKKLRTLNEVAGFLAANPE 137 (197)
Q Consensus 119 GKKlRSk~EV~ryL~~npe 137 (197)
-+-|+-..||..|+++|=+
T Consensus 94 k~yF~~~~dIipfI~~nWe 112 (177)
T 3rsn_A 94 KTMFSKDKDIIPFIDKYWE 112 (177)
T ss_dssp CSCEETTTTHHHHHHHTGG
T ss_pred cccccccchHHHHHHHHHH
Confidence 4556777899999999754
No 51
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.43 E-value=27 Score=23.95 Aligned_cols=14 Identities=21% Similarity=0.807 Sum_probs=12.4
Q ss_pred ceeeeeccccccee
Q 029175 26 DTYAAQCEKCFKWR 39 (197)
Q Consensus 26 ~~ya~QC~~C~KwR 39 (197)
|.+-|||..|..|-
T Consensus 30 ~~~MIqCd~C~~Wf 43 (68)
T 3o70_A 30 GRPMIECNECHTWI 43 (68)
T ss_dssp TCCEEECTTTCCEE
T ss_pred CCCEEECCCCCccc
Confidence 66889999999994
No 52
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=23.26 E-value=37 Score=28.71 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=49.5
Q ss_pred eeeeecccccc--eeeeccHHHHHHHHhHhc--CCCeeeccCCCCCCCCCCCcccCCcceeeecCCCCCCCCCCceEEEE
Q 029175 27 TYAAQCEKCFK--WRVINSSEEYEEIRCKIA--EIPFVCDRKPGVSCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLV 102 (197)
Q Consensus 27 ~ya~QC~~C~K--wR~i~t~e~yEeiR~~~~--~~pf~C~~~~~~sC~dP~Di~~d~sr~W~iDkp~iP~~P~GWkRevv 102 (197)
+|.-+|..|.+ .|+==|.++|+.|.+... -.-+.|. -|..|.+.. ..+.+++|=--. .|+-|-+.
T Consensus 102 ~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~-----ICg~~~~~~--~~k~lvVDHDH~----TG~VRGlL 170 (200)
T 3gox_A 102 TTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCP-----ICEKRSIVG--VTANLVHDHNHD----TGWGREWI 170 (200)
T ss_dssp EECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECT-----TTCCEEEBT--TTBCEEEEECTT----TCCEEEEE
T ss_pred ccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCc-----CCCCCCCcC--cccceeeecccC----CCcEeccc
Confidence 49999999975 444449999998877642 1128898 888877642 346788885443 68888888
Q ss_pred EcccC
Q 029175 103 LRKDF 107 (197)
Q Consensus 103 ~R~~g 107 (197)
-|...
T Consensus 171 C~~CN 175 (200)
T 3gox_A 171 CDSCN 175 (200)
T ss_dssp EHHHH
T ss_pred chhhc
Confidence 87653
No 53
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.62 E-value=44 Score=18.84 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=20.8
Q ss_pred eeecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 29 AAQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 29 a~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
..+|..|.|.=. ++..+. -+|....+.||.|+
T Consensus 12 ~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eow_A 12 PYKCNECGKAFR--ARSSLAIHQATHSGEKPSGPS 44 (46)
T ss_dssp CEECTTSCCEES--SHHHHHHHHHHHCCCSCSCTT
T ss_pred CeeccccCChhc--CHHHHHHHHHHcCCCCCCCCC
Confidence 357888887533 333332 25667788999997
No 54
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=22.50 E-value=28 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.918 Sum_probs=12.0
Q ss_pred ceeeeeccccccee
Q 029175 26 DTYAAQCEKCFKWR 39 (197)
Q Consensus 26 ~~ya~QC~~C~KwR 39 (197)
+.+-+||..|..|-
T Consensus 22 ~~~MI~Cd~C~~Wf 35 (75)
T 3kqi_A 22 TRFMIECDACKDWF 35 (75)
T ss_dssp TSCEEECTTTCCEE
T ss_pred CCCEEEcCCCCCCE
Confidence 46789999999994
No 55
>2o6k_A UPF0346 protein MW1311; ZR218, NESG, structural genomics, PSI-2, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: a.60.15.1
Probab=22.43 E-value=24 Score=25.91 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=20.5
Q ss_pred CcccchHHHHHhhhhCCCCCCCCcCCce
Q 029175 120 KKLRTLNEVAGFLAANPEYSDVSLSDFT 147 (197)
Q Consensus 120 KKlRSk~EV~ryL~~npe~~~l~le~Fs 147 (197)
|.-.+..||.+||+.|..| ..+++.||
T Consensus 35 K~s~d~~eIs~Yle~n~~y-~~sm~iFD 61 (81)
T 2o6k_A 35 KHDDDFNILSDYIETHGDF-TLPMSVFD 61 (81)
T ss_dssp SSCCCHHHHHHHHHHHCCC-SSCHHHHH
T ss_pred CCCCcHHHHHHHHHHcCCc-cchHHHHH
Confidence 3446789999999999988 55666664
No 56
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.19 E-value=29 Score=22.77 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=11.6
Q ss_pred ceeeeeccccccee
Q 029175 26 DTYAAQCEKCFKWR 39 (197)
Q Consensus 26 ~~ya~QC~~C~KwR 39 (197)
+..-|||..|..|-
T Consensus 19 ~~~mI~Cd~C~~Wf 32 (64)
T 1we9_A 19 DEFWICCDLCEMWF 32 (64)
T ss_dssp SSCEEECSSSCCEE
T ss_pred CCCEEEccCCCCCC
Confidence 35679999999993
No 57
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.09 E-value=31 Score=19.65 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=19.0
Q ss_pred eecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
-+|..|.|.=.- +.... -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~F~~--~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytp_A 13 YECSECGKAFAR--KSTLIMHQRIHTGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEESS--HHHHHHHHTTTSCCCCCSSC
T ss_pred eECCcCCcccCC--HHHHHHHHHHhCCCCCCCCC
Confidence 578888775332 22222 24556778999996
No 58
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.32 E-value=48 Score=18.80 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=19.6
Q ss_pred eecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
.+|..|.|.=. ++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2en9_A 13 FKCNECKKTFT--QSSSLTVHQRIHTGEKPSGPS 44 (46)
T ss_dssp CBCTTTCCBCS--SHHHHHHHHHHHTSSCCCSCC
T ss_pred EECCccCcccC--CHHHHHHHHHHcCCCCCCCCC
Confidence 46888876433 233322 24567788999997
No 59
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.26 E-value=54 Score=18.56 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=19.6
Q ss_pred eecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
.+|..|.|.=.- +..+. -+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~f~~--~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em4_A 13 YECIECGKAFKT--KSSLICHRRSHTGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEESS--HHHHHHHHHHHSSSSCCCCC
T ss_pred cCCCCCCCccCC--HHHHHHHHHhcCCCCCCCCC
Confidence 568888775332 23222 24667788999996
No 60
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.07 E-value=64 Score=18.15 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=20.0
Q ss_pred eecccccceeeeccHHHH-HHHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEY-EEIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~y-EeiR~~~~~~pf~C~ 62 (197)
.+|..|.|.=.- +... .-++.+..+.||.|.
T Consensus 13 ~~C~~C~k~F~~--~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emy_A 13 YECHECGKAFSR--KYQLISHQRTHAGEKPSGPS 44 (46)
T ss_dssp EECSSSCCEESS--HHHHHHHHHHHTTSCCSCSS
T ss_pred cCCCCCCcccCc--HHHHHHHHHHcCCCCCCCCC
Confidence 578888775332 2222 235667789999997
No 61
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=21.04 E-value=57 Score=18.47 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=19.7
Q ss_pred eecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
.+|..|.|.=.- +..+. -+|....+.||.|+
T Consensus 13 ~~C~~C~k~F~~--~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emj_A 13 FECAECGKSFSI--SSQLATHQRIHTGEKPSGPS 44 (46)
T ss_dssp EECSSSSCEESS--HHHHHHHHHHHTTSCSSSSC
T ss_pred EECCCCCcccCC--HHHHHHHHHHhCCCCCCCCC
Confidence 568888775332 23222 24567788999997
No 62
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=21.02 E-value=84 Score=22.05 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=21.3
Q ss_pred EEEECCCCCcccchHHHHHhhhhCCC
Q 029175 112 AYYITPTGKKLRTLNEVAGFLAANPE 137 (197)
Q Consensus 112 VYY~SP~GKKlRSk~EV~ryL~~npe 137 (197)
-||+.. ++.|.|..||..|...|++
T Consensus 65 ~~~l~~-~~~F~sl~~Lv~~y~~~~~ 89 (106)
T 3eaz_A 65 KLSIDE-EVYFENLMQLVEHYTSDAD 89 (106)
T ss_dssp EEESSS-SSCBSSHHHHHHHHHHCCT
T ss_pred EEEECC-CCccCCHHHHHHHHhhCCC
Confidence 467665 7999999999999999875
No 63
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=20.85 E-value=82 Score=20.67 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=15.7
Q ss_pred CCCCCCceEEEEEcccCCcceEEEECCC
Q 029175 91 PKTPGGFKRSLVLRKDFSKMDAYYITPT 118 (197)
Q Consensus 91 P~~P~GWkRevv~R~~gsK~DVYY~SP~ 118 (197)
..+|.||+..+ + ..+.+||+.-.
T Consensus 17 ~~LP~GWe~~~----~-~~Gr~Yyinh~ 39 (53)
T 2jmf_A 17 GPLPPGWEIRY----T-AAGERFFVDHN 39 (53)
T ss_dssp SCCCTTEEEEE----C-TTSCEEEEETT
T ss_pred CCCCcCcEEEE----c-CCCCEEEEeCC
Confidence 34699997553 2 35788998753
No 64
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.80 E-value=44 Score=18.99 Aligned_cols=31 Identities=16% Similarity=0.107 Sum_probs=19.6
Q ss_pred eecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
.+|..|.|.=. ++..+. -+|.+..+.||.|+
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emz_A 13 FKCNECGKGFG--RRSHLAGHLRLHSREKSSGPS 44 (46)
T ss_dssp CCCSSSCCCCS--SHHHHHHHHHHHHHTTCCCSC
T ss_pred eECCCCCcccC--CHHHHHHHHHHhCCCCCCCCC
Confidence 47888877532 233322 24667788999997
No 65
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.77 E-value=32 Score=23.46 Aligned_cols=35 Identities=14% Similarity=0.406 Sum_probs=22.7
Q ss_pred ceeeeecccccceeee----ccHHHHHHHHhHhcCCCeeec
Q 029175 26 DTYAAQCEKCFKWRVI----NSSEEYEEIRCKIAEIPFVCD 62 (197)
Q Consensus 26 ~~ya~QC~~C~KwR~i----~t~e~yEeiR~~~~~~pf~C~ 62 (197)
+..-|||..|..|--. -+.+..+.|-. ....|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~--~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLER--NGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHH--HTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccC--CCCeEECc
Confidence 4578999999999421 13455554422 34789997
No 66
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.47 E-value=49 Score=18.76 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=19.8
Q ss_pred eecccccceeeeccHHHHH-HHHhHhcCCCeeec
Q 029175 30 AQCEKCFKWRVINSSEEYE-EIRCKIAEIPFVCD 62 (197)
Q Consensus 30 ~QC~~C~KwR~i~t~e~yE-eiR~~~~~~pf~C~ 62 (197)
.+|..|.|.=. ++..+. -+|....+.||.|+
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yto_A 13 YKCSDCGKAFT--RKSGLHIHQQSHTGERHSGPS 44 (46)
T ss_dssp EECSSSCCEES--SHHHHHHHHHHHTCCCBTTTB
T ss_pred EECcccCCccC--CHhHHHHHHHHcCCCCCCCCC
Confidence 57888877533 233322 24567788999997
No 67
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=20.16 E-value=87 Score=22.99 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.0
Q ss_pred CCCCCceEEEEEcccCC---cceEEEECCCCCccc
Q 029175 92 KTPGGFKRSLVLRKDFS---KMDAYYITPTGKKLR 123 (197)
Q Consensus 92 ~~P~GWkRevv~R~~gs---K~DVYY~SP~GKKlR 123 (197)
..+.||.+||-+-+.++ |.|+-=.+|+..|+-
T Consensus 18 ~~~~GW~KELNlVSWN~~~pKyDIR~W~pdh~kMg 52 (80)
T 3pm7_A 18 ENARGWRKELNLISWNGRPPKFDLREWAPDHEKMG 52 (80)
T ss_dssp ECTTSCEEEEEEECGGGCCCEEEEEEECTTSSSEE
T ss_pred cCCCCceEEEEEEEECCCCCCccccccCcchhhcc
Confidence 34789999999998875 799999999987764
No 68
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.14 E-value=98 Score=22.51 Aligned_cols=24 Identities=4% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEECCCCCcccchHHHHHhhhhCCC
Q 029175 112 AYYITPTGKKLRTLNEVAGFLAANPE 137 (197)
Q Consensus 112 VYY~SP~GKKlRSk~EV~ryL~~npe 137 (197)
.||+. |+.|.|..||..|...|+.
T Consensus 75 ~~~l~--~~~F~sl~~LI~~y~~~~l 98 (119)
T 2gsb_A 75 QFMMG--GRYYNSIGDIIDHYRKEQI 98 (119)
T ss_dssp EEEES--SCCBSCHHHHHHHHTTSCS
T ss_pred CEEEC--CcccCCHHHHHHHHhhCcc
Confidence 47774 7999999999999999764
No 69
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural genomics, structural genomics consortium, SGC, hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A 2czk_A 2ddk_A
Probab=20.02 E-value=53 Score=27.02 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=21.3
Q ss_pred HHHHHhHhcCCCeeeccCCCCCCCCCCCcccCCcceeeecCC
Q 029175 47 YEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWVIDRP 88 (197)
Q Consensus 47 yEeiR~~~~~~pf~C~~~~~~sC~dP~Di~~d~sr~W~iDkp 88 (197)
.+.|++.+.+.+|.-|-. .+.......+..++|+||+-
T Consensus 51 ~~~L~~~~P~~~ilgEE~----~~~~~~~~~~~~~~WiiDPI 88 (273)
T 2fvz_A 51 ISELRERFPSHRFIAEEA----AASGAKCVLTHSPTWIIDPI 88 (273)
T ss_dssp HHHHHTTSTTCEECCCCC---------CCCCCSSCEEEEEEE
T ss_pred HHHHHHHCCCCeEEeCCC----CCCCCccCCCCCCEEEEeCc
Confidence 356667777777877732 11111112346789999973
Done!