BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029177
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 340 bits (872), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 159/179 (88%), Positives = 171/179 (95%)
Query: 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPELRHYAP VPI+LVGTK
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DLR+DKQ+ I+HPGA PITT QGEELKKLIG+ +YIECSSKTQQNVK VFDAAIKVVLQ
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQ 179
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 334 bits (856), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 156/179 (87%), Positives = 170/179 (94%)
Query: 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTK
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DLR+DKQ+ I+HPGA PITT QGEELKKLIGA YIECSSK+Q+NVK VFDAAI+VVLQ
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 331 bits (848), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 155/179 (86%), Positives = 167/179 (93%)
Query: 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
M+TARFIKCVTVGDGAVGKTCMLISYT NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKW+PEL+HYAP +PIVLVGTK
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DLR+DKQ+L +HPGA ITTAQGEEL+K+IGA Y+ECSSKTQQNVK VFD AI+V L+
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALR 179
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 300 bits (769), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 143/179 (79%), Positives = 157/179 (87%), Gaps = 2/179 (1%)
Query: 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
M+ ++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG VNLGLWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYEN+ KKW+PELR +AP VPIVLVGTK
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DLR+DK YL +H IT+ QGEEL+K IGAA YIECSSKTQQNVK VFD AIKVVLQ
Sbjct: 124 DLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/179 (63%), Positives = 138/179 (77%), Gaps = 2/179 (1%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
T + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDT
Sbjct: 18 GTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 77
Query: 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
AGQEDY+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK D
Sbjct: 78 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 137
Query: 123 LREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
LR+DK + + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 138 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 240 bits (613), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/175 (64%), Positives = 137/175 (78%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 240 bits (613), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 240 bits (612), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 240 bits (612), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 240 bits (612), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 240 bits (612), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/173 (64%), Positives = 135/173 (78%), Gaps = 2/173 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ V
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGK C+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 70
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 130
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 131 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N P +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 237 bits (604), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 237 bits (604), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DV L+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 237 bits (604), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 236 bits (603), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DV L+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 236 bits (603), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 236 bits (603), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DV L+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 236 bits (603), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 137/179 (76%), Gaps = 2/179 (1%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
+ + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDT
Sbjct: 1 GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
AGQEDY+RLRPLSY DV L+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK D
Sbjct: 61 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120
Query: 123 LREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
LR+DK + + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 236 bits (602), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N F +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 236 bits (602), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 111/174 (63%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S ASYEN+ KW PE+RH+ P+ PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + PIT QG L K I + Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 234 bits (598), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + PIT QG + + IG+ Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 234 bits (598), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + PIT QG + + IG+ Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 234 bits (598), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S AS+EN+ KW PE+RH+ P PI+LVGTK DLR+DK
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + PIT QG + + IG+ Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 134/175 (76%), Gaps = 2/175 (1%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG E
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
DY+RLRPLSY DVFL+ FSL+S AS+ ++ KW PE+RH+ P PI+LVGTK DLR+D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 127 KQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
K + + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 134/175 (76%), Gaps = 2/175 (1%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG E
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
DY+RLRPLSY DVFL+ FSL+S AS+ ++ KW PE+RH+ P PI+LVGTK DLR+D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 127 KQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
K + + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 234 bits (596), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 134/175 (76%), Gaps = 2/175 (1%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG E
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
DY+RLRPLSY DVFL+ FSL+S AS+ ++ KW PE+RH+ P PI+LVGTK DLR+D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 127 KQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
K + + TPIT QG + K IGA Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 232 bits (591), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/193 (60%), Positives = 139/193 (72%), Gaps = 21/193 (10%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 68 YNRLRPLSY--------------RG-----ADVFLLAFSLISKASYENISKKWIPELRHY 108
Y+RLRPLSY RG ADVFL+ FSL+S AS+EN+ KW PE+RH+
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 109 APTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166
P PI+LVGTK DLR+DK + + TPIT QG + K IGA Y+ECS+ TQ+
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 167 VKTVFDAAIKVVL 179
+KTVFD AI+ VL
Sbjct: 186 LKTVFDEAIRAVL 198
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FSL+S ASYEN+ KW PE+RH+ P+ PI+LVGTK DLR+DK
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + PIT QG L K I + Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 231 bits (589), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/177 (62%), Positives = 135/177 (76%), Gaps = 2/177 (1%)
Query: 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
++ IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD VNLGLWDTAG
Sbjct: 7 SQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 66
Query: 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
QEDY+RLRPLSY DVFL+ FSL+S ASYEN+ KW PE+RH+ P+ PI+LVGTK DLR
Sbjct: 67 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 126
Query: 125 EDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+DK + + PIT QG L K I + Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 133/177 (75%), Gaps = 2/177 (1%)
Query: 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
A +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G LGL+DTAG
Sbjct: 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
QEDY+RLRPLSY DVFL+ FS+++ AS++N+ ++W+PEL+ YAP VP +L+GT+ DLR
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135
Query: 125 EDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+D + L +N PI QG++L K IGA Y+ECS+ TQ+ +KTVFD AI +L
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 131/182 (71%), Gaps = 2/182 (1%)
Query: 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
+++ + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+
Sbjct: 4 IISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 63
Query: 61 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 120
DTAGQEDY+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 123
Query: 121 QDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
DLR+D + + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 179 LQ 180
L+
Sbjct: 184 LE 185
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 125 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 179
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 134 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 188
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 126
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 127 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 181
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 129/178 (72%), Gaps = 2/178 (1%)
Query: 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
++ IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAG
Sbjct: 5 SQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 64
Query: 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
QEDY+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR
Sbjct: 65 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 124
Query: 125 EDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+D + + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 126
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 127 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 181
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 203 bits (517), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 203 bits (516), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 202 bits (515), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 202 bits (514), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVP VFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 202 bits (514), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGK C+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 70
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 130
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 131 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 185
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N P++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAG ED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 128 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
IKCV VGD AVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
Y+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P P +LVGT+ DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + PIT E+L + + A Y+ECS+ TQ+ +K VFD AI L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 129/175 (73%), Gaps = 2/175 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
+KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG V L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
+++LRPL Y D+FLL FS++S +S++N+S+KW+PE+R + P PI+LVGT+ DLRED
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 128 QYLI--NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ LI + P+ + L + I AA YIECS+ TQ+N+K VFDAAI +Q
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 71 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 130
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 131 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR+D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ + +G ++ I A Y+ECS+KT++ V+ VF+ A + LQ
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR+D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ + +G ++ I A Y+ECS+KT++ V+ VF+ A + LQ
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 189 bits (481), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 189 bits (481), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 189 bits (481), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR+D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ + +G ++ I A Y+ECS+KT++ V+ VF+ A + LQ
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGD A GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
+RLRPLSY DV L+ FS+ S S ENI +KW+PE++H+ P VPI+LV K+DLR D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ P+ T G + I A Y+ECS+KT++ V+ VF+ A + LQ
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGD A GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
+R RPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ P+ A+G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 186 bits (472), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
+RLRPLSY DV L+ FS+ S S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A + LQ
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGDGA GKTC+LI + FP YVPTVF+N+ A+V VDG V L LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
+RLRPLSY ++V L+ FS+ S EN+ +KWI E+ H+ VPI+LVG K DLR D Q
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
+ + G P+T+ +G+ + IGA Y ECS+KT V+ VF+AA + L
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
R +K V VGDG GKT +L+ + FP Y PTVF+ + N+ V G V+L +WDTAGQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
+DY+RLRPL Y A V LL F + S S++NI +W PE+ H+ VPI++VG K DLR+
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 126 DKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
DK + + G P+T +G+E+ + +GA Y+ECS++ NV VF A +V L
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
N + +K V VGDGAVGKTC+L++++ PT YVPTVF+NFS + L LWDT
Sbjct: 18 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
AGQE+Y+RLRPLSY +DV LL F++ ++ S++NIS KW PE++HY T VLVG K D
Sbjct: 78 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
LR+D G+ +T +G++L + +G YIE SS + + VF+ ++ +
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
N + +K V VGDGAVGKTC+L++++ PT YVPTVF+NFS + L LWDT
Sbjct: 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
AGQE+Y+RLRPLSY +DV LL F++ ++ S++NIS KW PE++HY T VLVG K D
Sbjct: 79 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
LR+D G+ +T +G++L + +G YIE SS + + VF+ ++ +
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 110/180 (61%), Gaps = 7/180 (3%)
Query: 1 MMNTARFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLG 58
+M+ + +KC V VGD GKT +L + + FP +YVPTVF+N++A+ +D + L
Sbjct: 15 IMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELS 74
Query: 59 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVG 118
LWDT+G Y+ +RPLSY +D L+ F + + +++ KKW E++ + P ++LVG
Sbjct: 75 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 134
Query: 119 TKQDLREDKQYLI---NHPGATPITTAQGEELKKLIGAAVYIECSS-KTQQNVKTVFDAA 174
K DLR D L+ NH TP++ QG + K IGAA YIECS+ +++ +V+ +F A
Sbjct: 135 CKSDLRTDVSTLVELSNH-RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 2 MNTARFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 59
M+ + +KC V VGD GKT +L + + FP +YVPTVF+N++A+ +D + L L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 60 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGT 119
WDT+G Y+ +RPLSY +D L+ F + + +++ KKW E++ + P ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 120 KQDLREDKQYLI---NHPGATPITTAQGEELKKLIGAAVYIECSS-KTQQNVKTVFDAA 174
K DLR D L+ NH TP++ QG + K IGAA YIECS+ +++ +V+ +F A
Sbjct: 141 KSDLRTDVSTLVELSNH-RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 106/173 (61%), Gaps = 7/173 (4%)
Query: 8 IKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
+KC V VGD GKT +L + + FP +YVPTVF+N++A+ +D + L LWDT+G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
Y+ +RPLSY +D L+ F + + +++ KKW E++ + P ++LVG K DLR
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125
Query: 126 DKQYLI---NHPGATPITTAQGEELKKLIGAAVYIECSS-KTQQNVKTVFDAA 174
D L+ NH TP++ QG + K IGAA YIECS+ +++ +V+ +F A
Sbjct: 126 DVSTLVELSNH-RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGD GKT ML + +P YVPTVF+N++A + + V L LWDT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
+ +RPL Y +D LL F + + ++ KKW E+ Y P+ ++L+G K DLR D
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVFDAAIKVVL 179
L ++H PI+ QG + K +GA +Y+E S+ T ++++ ++F A + L
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGD GKT ML + +P YVPTVF+N++A + + V L LWDT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
+ +RPL Y +D LL F + + ++ KKW E+ Y P+ ++L+G K DLR D
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVFDAAIKVVL 179
L ++H PI+ QG + K +GA +Y+E S+ T ++++ ++F A + L
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VGD GKT ML + +P YVPTVF+N++A + + V L LWDT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
+ +RPL Y +D LL F + + ++ KKW E+ Y P+ ++L+G K DLR D
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVFDAAIKVVL 179
L ++H PI+ QG + K +GA +Y+E S+ T ++++ ++F A + L
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 18/179 (10%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
+K + +GDG VGK+ ++ Y +N F + T+ F + ++ VDG V L +WDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-----VPIVLVGTK 120
E + LR YRGAD LL FS+ + S+EN+ W E +YA P V++G K
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
D +ED+Q +TT + + G Y+E S+K NV F+ A++ VL
Sbjct: 126 VD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGL 59
M + K + +GDG VGK+ ++ Y +N F T T+ F + ++ VDG V + +
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 60 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPI 114
WDTAGQE + LR YRG+D LL FS+ S++N+S W E +YA + P
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPF 119
Query: 115 VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAA 174
V++G K D+ E + ++T + + + G Y E S+K NV F+ A
Sbjct: 120 VILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168
Query: 175 IKVVL 179
++ VL
Sbjct: 169 VRRVL 173
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGL 59
M + K + +GDG VGK+ ++ Y +N F T T+ F + ++ VDG V + +
Sbjct: 3 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 62
Query: 60 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPI 114
WDTAGQE + LR YRG+D LL FS+ S++N+S W E +YA + P
Sbjct: 63 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPF 121
Query: 115 VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAA 174
V++G K D+ E + ++T + + + G Y E S+K NV F+ A
Sbjct: 122 VILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 170
Query: 175 IKVVL 179
++ VL
Sbjct: 171 VRRVL 175
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 63
+ K + +GDG VGK+ ++ Y +N F + T+ F + ++ VDG V + +WDTA
Sbjct: 9 SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVG 118
GQE + LR YRG+D LL FS+ S++N+S W E +YA + P V++G
Sbjct: 69 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 127
Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
K D++E + ++T + + K G Y E S+K NV F+ A++ +
Sbjct: 128 NKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 179 L 179
L
Sbjct: 177 L 177
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ +R R + FL F++ + S+E+I ++ I ++ + VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
A + + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+R +R + FLL FS+ S+ + ++ I ++ +P+++VG K DL E
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+Q P+ A+ K Y+E S+KT+ NV VF
Sbjct: 125 RQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 158
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+R +R + FLL FS+ S+ + ++ I ++ +P+++VG K DL E
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+Q P+ A+ K Y+E S+KT+ NV VF
Sbjct: 129 RQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 162
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E Y R+ YRGA LL + + +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
H A P A+ K + +IE S+ NV+ F
Sbjct: 124 --------HLRAVPTDEARAFAEKNNLS---FIETSALDSTNVEEAF 159
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ +R R + FL F++ + S+E+I ++ I ++ + VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
A + + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ +R R + FL F++ + S+E+I ++ I ++ + VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
A + + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ +R R + FL F++ + S+E+I ++ I ++ + VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL--- 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
P T + T Q ++L + G +IE S+KT+Q V F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ +R R + FL F++ + S+E+I ++ I ++ + VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 121 --------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E Y + YRGA LL + + +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
H A P A+ K + +IE S+ NV+ F
Sbjct: 139 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 174
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ +R R + FL F++ + S+E+I ++ I ++ + VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL--- 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
P T + T Q ++L + G +IE S+KT+Q V F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E Y + YRGA LL + + +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
H A P A+ K + +IE S+ NV+ F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 183
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + VGD VGKTC+L+ + F ++ TV +F V+ VDG V L +WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLR 124
E + + YR A LL + + +KAS++NI + W+ E+ YA V ++L+G K D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
++ + GE+L K G ++E S+KT NV F A K
Sbjct: 130 HER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAK 170
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + ++ TV L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + S++N+ K+WI E+ YA V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ +T+ +G EL G +IE S+K NV+ F
Sbjct: 128 SKR----------VVTSDEGRELADSHGIK-FIETSAKNAYNVEQAF 163
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + SY N+ K+W+ E+ YA V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K ++++ A + G ++E S+K NV+ F
Sbjct: 128 TKK--VVDNTTAKEFADSLG---------IPFLETSAKNATNVEQAF 163
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + SY N+ K+W+ E+ YA V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K ++++ A + G ++E S+K NV+ F
Sbjct: 128 TKK--VVDNTTAKEFADSLG---------IPFLETSAKNATNVEQAF 163
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 63
+ +K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L LWDTA
Sbjct: 5 SSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 64
Query: 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQD 122
GQE + + YRGA +L + + + ++ NI K+W + +A ++LVG K D
Sbjct: 65 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 123
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ +T QGE L K +G +IE S+K NV +F K++ +
Sbjct: 124 ME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
+K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L LWDTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
+ + YRGA +L + + + ++ NI K+W + +A ++LVG K D+
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 138
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+T QGE L K +G +IE S+K NV +F K++ +
Sbjct: 139 ----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 182
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E Y + YRGA LL + + +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
H A P A+ K + +IE S+ NV+ F
Sbjct: 127 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 162
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
+K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
+ + YRGA +L + + + ++ NI K+W + +A ++LVG K D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+T QGE L K +G +IE S+K NV +F K++ +
Sbjct: 122 ----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
IK + +GD VGKT L YT N F ++ TV +F VV +GS+ V
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 56 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
+L LWDTAGQE + L +R A FLL F L S+ S+ N+ + W+ +L+ Y
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
IVL+G K DL P + Q EL G Y E S+ T QNV+ +
Sbjct: 144 IVLIGNKADL----------PDQREVNERQARELADKYGIP-YFETSAATGQNVEKAVET 192
Query: 174 AIKVVLQ 180
+ ++++
Sbjct: 193 LLDLIMK 199
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
N+ K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DT
Sbjct: 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 73
Query: 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQ 121
AGQEDY +R +R + FL FS+ S+ + LR VP +LVG K
Sbjct: 74 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 133
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
DL + +Q + + E+ Y+E S+KT+ NV VF
Sbjct: 134 DLEDKRQVSVEEA------KNRAEQWN-----VNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
N+ K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DT
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 61
Query: 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQ 121
AGQEDY +R +R + FL FS+ S+ + LR VP +LVG K
Sbjct: 62 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 121
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
DL + +Q + + E+ Y+E S+KT+ NV VF
Sbjct: 122 DLEDKRQVSVEEA------KNRAEQWN-----VNYVETSAKTRANVDKVF 160
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
N+ K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DT
Sbjct: 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 69
Query: 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQ 121
AGQEDY +R +R + FL FS+ S+ + LR VP +LVG K
Sbjct: 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 129
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
DL + +Q + + E+ Y+E S+KT+ NV VF
Sbjct: 130 DLEDKRQVSVEE------AKNRAEQWN-----VNYVETSAKTRANVDKVF 168
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
+ + YRGA +L + + + ++ NI K+W + +A ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+T QGE L K +G +IE S+K NV +F K++ +
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 18/167 (10%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 69 NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
+R +R + FL FS+ S+ + ++ I ++ VP +LVG K DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 127 KQYLINHPGATPITTAQGEELKKLIGA--AVYIECSSKTQQNVKTVF 171
+Q + EE K Y+E S+KT+ NV VF
Sbjct: 125 RQVSV-------------EEAKNRADQWNVNYVETSAKTRANVDKVF 158
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E Y + YRGA LL + + +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
H A P A+ K + +IE S+ NV+ F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 183
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E Y + YRGA LL + + +YEN+ ++W+ ELR +A + + I LVG K DLR
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
H A P A+ K + +IE S+ NV+ F
Sbjct: 130 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 165
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E Y + YRGA LL + + +YEN+ ++W+ ELR +A + + I LVG K DLR
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
H A P A+ K + +IE S+ NV+ F
Sbjct: 124 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 159
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
+ + YRGA +L + + + ++ NI K+W + +A ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+T QGE L K +G +IE S+K NV +F K++ +
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I + + F TDY PT+ D+++ V+D L + DTAGQE++ +R R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 80 DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
+ FLL FS+ + S+E I K LR P++L+G K DL +Q
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ---------- 127
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
+T +G++L + + Y+E S+K + NV F ++V+
Sbjct: 128 VTQEEGQQLARQL-KVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTV-NLGLWDTAGQ 65
+K + +GD VGKT ++ Y ++ + Y T+ +F + V VDG V + +WDTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTK 120
E + L YRGAD +L + + + +S+ENI K W E +A T P V++G K
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
D E K+ ++ +EL K +G S+K NV T F+ + LQ
Sbjct: 128 IDAEESKKI---------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
+ + YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K ++++ A + G ++E S+K NV+ F
Sbjct: 120 K--VVDYTTAKEFADSLG---------IPFLETSAKNATNVEQSF 153
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K ++++ A + G ++E S+K NV+ F
Sbjct: 125 TKK--VVDYTTAKEFADSLG---------IPFLETSAKNATNVEQSF 160
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
IK + +GD VGKT L YT N F ++ TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 56 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
+L LWDTAG E + L +R A FLL F L S+ S+ N+ + W+ +L+ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
IVL+G K DL P + Q EL + G Y E S+ T QNV+ +
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 174 AIKVVLQ 180
+ ++++
Sbjct: 179 LLDLIMK 185
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K ++++ A + G ++E S+K NV+ F
Sbjct: 125 TKK--VVDYTTAKEFADSLG---------IPFLETSAKNATNVEQSF 160
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 11/166 (6%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
IK V +G+ AVGK+ +++ + SN F + PT+ F + V ++ TV +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRE 125
+ L P YR A L+ + + S+ ++ W+ EL A + I LVG K D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKID--- 119
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ G + +GE+L + G ++ E S+KT +NV VF
Sbjct: 120 ----XLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVF 160
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
K + +GD VGKTC+L ++ + F + ++ T+ +F + +DG + L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRED 126
+ + YRGA +L + + ++ S++NI + WI + H + V +++G K D+ +
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+Q ++ +GE+L G ++E S+K NV+ F
Sbjct: 127 RQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 160
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K TTA+ E +G ++E S+K NV+ F
Sbjct: 144 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGKTC+L ++ + F + ++ T+ +F + +DG + L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLR 124
E + + YRGA +L + + ++ S++NI + WI + H + V +++G K D+
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ +Q ++ +GE+L G ++E S+K NV+ F
Sbjct: 127 DKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 162
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +G+ VGK+C+L+ ++ +T+ DY+ T+ +F V +DG TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRG+ ++ + + + S+ + K W+ E+ YA TV +LVG K DL+
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 125 EDK 127
+ +
Sbjct: 127 DKR 129
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
K V +GD GK+ +++ + + F T+ F S + V+ +TV +WDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
Y+ L P+ YRGA ++ F + ++AS+E +KKW+ EL+ P + + L G K DL +
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNKSDLLDA 132
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
++ TA+ + ++E S+KT NVK +F
Sbjct: 133 RK-----------VTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K ++++ A + G ++E S+K NV+ F
Sbjct: 127 TKK--VVDYTTAKEFADSLG---------IPFLETSAKNATNVEQSF 162
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 14/174 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLRED 126
+ L P R + V ++ + + + S++ S KWI ++R V I+LVG K DL +
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+Q IT +GE+ K + + ++IE S+KT NVK +F +L+
Sbjct: 123 RQ----------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 14/180 (7%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 61
N + K + +GD VGK+C+L +T F D T+ F ++ V G + L +WD
Sbjct: 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTK 120
TAGQE + + YRGA L+ + + +++Y ++S W+ + R+ P I+L+G K
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNK 129
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DL + +T + ++ + G +++E S+KT +NV+ F A K + Q
Sbjct: 130 ADLEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +G+ VGK+C+L+ ++ +T+ DY+ T+ +F V +DG TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRG+ ++ + + + S+ + K W+ E+ YA TV +LVG K DL+
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 125 EDK 127
+ +
Sbjct: 127 DKR 129
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
IK + +GD VGKT L YT N F ++ TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 56 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
+L LWDTAG E + L +R A FLL F L S+ S+ N+ + W+ +L+ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
IVL+G K DL P + Q EL + G Y E S+ T QNV+ +
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 174 AIKVVLQ 180
+ ++++
Sbjct: 179 LLDLIMK 185
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K TTA+ E +G ++E S+K NV+ F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K TTA+ E +G ++E S+K NV+ F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K TTA+ E +G ++E S+K NV+ F
Sbjct: 152 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 63
A K + +GD VGK+C+L+ +T F + T+ F A ++ +DG + L +WDTA
Sbjct: 8 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTA 67
Query: 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQD 122
GQE + + YRGA LL + + + ++ +++ W+ + R H + I+L+G K D
Sbjct: 68 GQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSD 126
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
L ++ + +GE + G +++E S+KT NV+ F
Sbjct: 127 LESRRE----------VKKEEGEAFAREHG-LIFMETSAKTASNVEEAF 164
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+C+L+ +T F + T+ F A +V +DG + L +WDTAGQ
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
E + + YRGA LL + + + ++ +++ W+ + R H + + I+L+G K DL
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ + +GE + G +++E S+KT NV+ F
Sbjct: 140 SRR----------DVKREEGEAFAREHG-LIFMETSAKTACNVEEAF 175
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +G+ VGK+C+L+ ++ +T+ DY+ T+ +F V +DG TV L +WDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRG+ ++ + + + S+ + K W+ E+ YA TV +LVG K DL+
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 125 EDK 127
+ +
Sbjct: 140 DKR 142
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
N+ K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DT
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 61
Query: 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTK 120
AG EDY +R +R + FL FS+ S+ + ++ I ++ VP +LVG K
Sbjct: 62 AGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNK 120
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
DL + +Q + + E+ Y+E S+KT+ NV VF
Sbjct: 121 SDLEDKRQVSVEEA------KNRAEQWN-----VNYVETSAKTRANVDKVF 160
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +GD VGK+ +L+ + NTF Y+ T+ +F V ++G V L +WDTAGQ
Sbjct: 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
E + + YRG ++ + + S S+ N+ K+W+ E+ V +LVG K D
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND--- 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
P + T + +G ++ E S+K NV+ +F+ ++VL+
Sbjct: 125 -------DPERKVVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFNCITELVLR 171
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 83 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 130
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 131 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
IK + +GD VGKT L YT N F ++ TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 56 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
+L LWDTAG E + L +R A FLL F L S+ S+ N+ + W +L+ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
IVL+G K DL P + Q EL + G Y E S+ T QNV+ +
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 174 AIKVV 178
+ ++
Sbjct: 179 LLDLI 183
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
IK + +GD VGKT L YT N F ++ TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 56 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
+L LWDTAG E + L +R A FLL F L S+ S+ N+ + W +L+ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
IVL+G K DL P + Q EL + G Y E S+ T QNV+ +
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 174 AIKVVLQ 180
+ ++ +
Sbjct: 179 LLDLIXK 185
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG + DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
IK V VG+GAVGK+ M+ Y F DY T+ D + V+ V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+++ + YRGA +L FS + S+E IS W ++ +P LV K DL +D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ I + E L K + Y S K NV VF
Sbjct: 125 ----------SCIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K V +G+ VGKTC++ +T FP T+ +F V ++G V L +WDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E + + YR A+ +L + + + S+ + +W+ E+ YA V VLVG K DL
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLA 144
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF-DAAIKVV 178
E ++ ++ A + AQ Y+E S+K NV+ +F D A +++
Sbjct: 145 ERRE--VSQQRAEEFSEAQD---------MYYLETSAKESDNVEKLFLDLACRLI 188
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
K V +G+G VGKT +++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLRED 126
++ L P+ YR ++ +L + + + S++ + K W+ ELR + + +VG K DL ++
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ ++ + E + +GA Y S+K + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
K V +G+G VGKT +++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLRED 126
++ L P+ YR ++ +L + + + S++ + K W+ ELR + + +VG K DL ++
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ ++ + E + +GA Y S+K + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y P++ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
K V +G+G VGKT +++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLRED 126
++ L P+ YR ++ +L + + + S++ + K W+ ELR + + +VG K DL ++
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ ++ + E + +GA Y S+K + ++ +F
Sbjct: 141 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ + Q ++L + G YIE S+KT+Q V+ F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y P++ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 82 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 129
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 130 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F ++ PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
N R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWD
Sbjct: 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTK 120
TAGQE + L P R + V ++ + + + S+ S KWI ++R V I+LVG K
Sbjct: 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNK 128
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
DL + +Q ++T +GE K + ++IE S+K NVK +F
Sbjct: 129 TDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 168
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T N F D T+ F+ + ++G + +WDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E Y + YRGA L+ + + +SYEN + W+ ELR A V + L+G K DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDL- 130
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+L P T AQ +L ++ E S+ +NV F+ I + Q
Sbjct: 131 ---AHLRAVPTEESKTFAQENQL-------LFTETSALNSENVDKAFEELINTIYQ 176
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG+E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ +++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 14/180 (7%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 61
N + K + +GD VGK+C+L +T F D T+ F ++ V G + L +WD
Sbjct: 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTK 120
TAGQ + + YRGA L+ + + +++Y ++S W+ + R+ P I+L+G K
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNK 144
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DL + +T + ++ + G +++E S+KT +NV+ F A K + Q
Sbjct: 145 ADLEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL P T
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ T Q ++L + G +IE S+KT+Q V F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL P T
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ T Q ++L + G +IE S+KT+Q V F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 13 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 71
+GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQE + +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDL 123
YRGA ++ + + + S+ N+ K+W+ E+ YA V +LVG K DL
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 14/175 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +G GK+C+L + N F D T+ F + VV V G TV L +WDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E + + YRGA LL + + S+ +Y +++ W+ + R A P + ++L G K+DL
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDL- 142
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
D + + A+ AQ EL +++E S+ T +NV+ F + +L
Sbjct: 143 -DPEREVTFLEASRF--AQENEL-------MFLETSALTGENVEEAFLKCARTIL 187
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F + PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+ +I+ ++ I ++ + VP+VLVG K DL P T
Sbjct: 94 EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT 142
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ T Q EL K G +IE S+KT+Q V+ F ++ + Q
Sbjct: 143 -VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREIRQ 183
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 127 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 166
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+ + +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
+ + Q ++L + G YIE S+KT+Q V+ F ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAG 64
K V +GD VGK+ +L +T + F + T+ F+ + + + +WDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDL 123
QE Y + YRGA LL + + K S+ENI +KW+ ELR A + + I+LVG K DL
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ + +IN AT A+ E+L +IE S+ NV+ F
Sbjct: 126 KHLR--VINDNDATQY--AKKEKL-------AFIETSALEATNVELAF 162
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ AVGK+ +++ + F T+ F + +V +D +TV +WDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ ++ +K W+ EL R +P++ I L G K DL
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLAN 127
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ ++ + A + +++E S+KT NV +F A K
Sbjct: 128 KR--MVEYEEAQAYADD---------NSLLFMETSAKTAMNVNDLFLAIAK 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + + ++ +K W+ EL R +P + I L G K DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 123 KR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAK 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + + ++ +K W+ EL R +P + I L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 125 KR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAK 164
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 66
K + +G+ +VGKT L Y ++F +V TV +F + + + L +WDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
Y + YRGA F+L + + ++ S+ N + W +++ Y+ ++LVG K D+ +
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
++ +++ +G +L +G + E S+K NVK F+ + V+ +
Sbjct: 125 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + ++ E S+KT NV +F A K
Sbjct: 127 KR--------AVDFQEAQSYADDNSL---LFXETSAKTSXNVNEIFXAIAK 166
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
+ FL F++ + S+E+I ++ I ++ + VP+VLVG K DL P T
Sbjct: 94 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT 142
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ T Q ++L + G +IE S+KT+Q V F
Sbjct: 143 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 174
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 67
K V GD AVGK+ L+ N F + T+ +F ++VDG L LWDTAGQE
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
+ + +R AD LL + + + S+ NI ++W+ + A TVPI+LVG K D+R+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167
G + GE+L G A++ E S+K N+
Sbjct: 149 AAT----EGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNI 184
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 66
K + +G+ +VGKT L Y ++F +V TV +F V + L +WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
Y + YRGA FLL + + ++ S+ + + W +++ Y+ ++LVG K DL +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
++ + G L +G + E S+K NVK VF+ + V+ +
Sbjct: 142 ER----------VVPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K V VGD +VGKTC++ + + F T+ +F+ + + G V L +WDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
E + + YR A+ +LA+ + ++S+ ++ WI ++R YA + + +L+G K DL
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
E ++ ++ A+ + L + IE S+K NV+ F
Sbjct: 148 ELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
++ + +G VGKT ++ +T +TF TV +F V + G + L +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRE 125
+N + YR A +L + + K +++++ KW+ + YA ++LVG K D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
D++ IT QGE+ + I + E S+K NV +F + +L+
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + ++ S+ +K W+ EL R +P + I L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 125 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 164
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQE 66
K V +G+ VGKT +L +T N F D T+ FS V+ G + V +WDTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y + YRGA LL F L +Y + ++W+ EL H T+ ++LVG K DL +
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
++ P A+ L +++E S+ NV+ F+ +K +
Sbjct: 130 AREV----PTEEARMFAENNGL-------LFLETSALDSTNVELAFETVLKEIF 172
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLRED 126
+ L P R + V ++ + + + S++ + KWI ++R V I+LVG K DL +
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+Q ++ +GE K + ++IE S+K NVK +F
Sbjct: 122 RQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 155
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQE 66
K + +G+ +VGKT L Y +TF +V TV +F V V L +WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
Y + YRGA F+L + + ++ S+ N + W +++ Y+ ++LVG K D+ E
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
++ + T +G+ L + +G + E S+K +V+ F+ + +
Sbjct: 143 ER----------VVPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 184
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
+K + +G+ VGK+ +L+ +T +TF + T+ +F + VDG+ L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV--LVGTKQDLR 124
+ L P YRGA +L + + + ++ + W+ EL Y IV LVG K D +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
E+++ + +G + + + ++IE S+KT V+ F+ ++ ++Q
Sbjct: 134 ENRE----------VDRNEGLKFARK-HSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
R K V +G G VGK+ + + + F Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
E + +R L + F L +S+ +++++ ++ LR VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+++ + QG+ L + ++E S+K++ NV +F
Sbjct: 122 DER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQE 66
K V +G+ VGKT +L +T N F D T+ FS V+ G + V +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y + YRGA LL F L +Y + ++W+ EL H T+ ++LVG K DL +
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
++ P A+ L +++E S+ NV+ F+ +K +
Sbjct: 145 AREV----PTEEARMFAENNGL-------LFLETSALDSTNVELAFETVLKEIF 187
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
R K V +G G VGK+ + + + F +Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
E + +R L + F L +S+ +++++ ++ LR VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+++ + QG+ L + ++E S+K++ NV +F
Sbjct: 122 DER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
Y+ L P+ YRGA ++ + + + ++ +K W+ EL R +P + I L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ A AQ + +++E S+KT NV +F A K
Sbjct: 125 KR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAK 164
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTV 55
IK + +GD VGKT +L YT F + ++ TV +F VV G +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 56 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRH--YAPTVP 113
+L LWDTAG E + L +R A FLL F L ++ S+ N+ + WI +L+ Y+
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
IVL G K DL + + + + EL + G Y E S+ N+ +
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISHAIEM 178
Query: 174 AIKVVLQ 180
+ ++++
Sbjct: 179 LLDLIMK 185
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 64
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ T+ L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDL 123
QE + L P R + ++ + + + S++ + KWI ++R V I+LVG K DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ +Q ++ +GE K + ++IE S+K NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 160
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
R K V +G G VGK+ + + + F Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
E + +R L + F L +S+ +++++ ++ LR VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+++ + QG+ L + ++E S+K++ NV +F
Sbjct: 122 DER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
N R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWD
Sbjct: 2 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTK 120
TAG E + L P R + V ++ + + + S++ + KWI ++R V I+LVG K
Sbjct: 62 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 120
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
DL + +Q ++ +GE K + ++IE S+K NVK +F
Sbjct: 121 TDLADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 160
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 1 MMNTARFI-KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLG 58
M T F+ K + +G+ GK+C+L + F D T+ F + ++ V G V L
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 59 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLV 117
+WDTAGQE + + YRGA LL + + S+ +Y N W+ + R A + I+L
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILC 121
Query: 118 GTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177
G K+DL D++ + A+ AQ EL +++E S+ T +NV+ F +
Sbjct: 122 GNKKDLDADRE--VTFLEASRF--AQENEL-------MFLETSALTGENVEEAFVQCARK 170
Query: 178 VL 179
+L
Sbjct: 171 IL 172
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 64
R +K +GD VGK+ ++ + + F + PT+ +F V G+ ++ L WDTAG
Sbjct: 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81
Query: 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDL 123
QE ++ L P+ YRG+ ++ + + + S+ + KKW+ EL+ + P + + + G K DL
Sbjct: 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDL 140
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
+ ++ P+ A+ E + IGA V +E S+K N++ +F
Sbjct: 141 SDIRE--------VPLKDAK--EYAESIGAIV-VETSAKNAINIEELFQG 179
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
N R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWD
Sbjct: 12 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTK 120
TAG E + L P R + V ++ + + + S++ + KWI ++R V I+LVG K
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 130
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
DL + +Q ++ +GE K + ++IE S+K NVK +F
Sbjct: 131 TDLADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 170
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 66
K + +G+ +VGKT L Y ++F +V TV +F + + + L +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
Y + YRGA F+L + + ++ S+ N + W +++ Y+ ++LVG K D +
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
++ +++ +G +L +G + E S+K NVK F+ + V+ +
Sbjct: 128 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 171
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 63
+ R K V +G VGK+ + + + F Y PT+ D++ V VD L + DTA
Sbjct: 2 SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTA 61
Query: 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQD 122
G E + +R L + F L +S+ +++++ ++ LR VP++LVG K D
Sbjct: 62 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
L +++ + QG+ L + ++E S+K++ NV +F
Sbjct: 122 LEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +G+ GK+C+L + F D T+ F + ++ V G V L +WDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLR 124
E + + YRGA LL + + S+ +Y N W+ + R A + I+L G K+DL
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
D++ + A+ AQ EL +++E S+ T ++V+ F + +L
Sbjct: 130 ADRE--VTFLEASRF--AQENEL-------MFLETSALTGEDVEEAFVQCARKIL 173
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
K V +G+ AVGKT ++ + +TF +Y T+ D S + +D V L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAPTVPIVLVGTKQDLRED 126
+ L P R + ++ + + ++ S+EN + KWI + L V I LVG K DL +
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
++ +T +G + + + E S+K N+K +F
Sbjct: 122 RK----------VTYEEGXQKAQEYNTXFH-ETSAKAGHNIKVLF 155
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 14 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 73
G G VGK+ +++ + TF Y+PTV D + + D S L + DT G + ++
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 74 LSYRGADVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVGTKQDLREDKQYLI 131
LS F+L +S+ S+ S E + + I E++ ++PI+LVG K D ++
Sbjct: 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--- 126
Query: 132 NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177
+ +++ E L + A ++E S+K NVK +F + +
Sbjct: 127 -------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNL 164
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
N R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ T+ L LWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTK 120
TAG E + L P R + ++ + + + S++ + KWI ++R V I+LVG K
Sbjct: 69 TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 127
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
DL + +Q ++ +GE K + ++IE S+K NVK +F
Sbjct: 128 TDLADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 167
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 63
+R K + +GD VGKTC+ + + FP T+ +F V +DG + + LWDTA
Sbjct: 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 77
Query: 64 GQEDYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTK 120
GQE + + + YR + + + + AS+ ++ WI E + + A +P +LVG K
Sbjct: 78 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNK 136
Query: 121 QDLR 124
DLR
Sbjct: 137 CDLR 140
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K V +GD VGK+ +L +T++ F + T+ F+ + V+ + +WDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
E Y + YRGA L+ + + +SYEN + W+ ELR A V + L+G K DL
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLTELRENADDNVAVGLIGNKSDLA 128
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
H A P A+ ++ + ++ E S+ NV F I + Q
Sbjct: 129 --------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDKAFRELIVAIFQ 173
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I + + F +DY PT+ D+++ VDG L + DTAGQE++ +R R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 80 DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
FLL F++ + S+ + K + LR P+VLVG K DL +Q P
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VP 133
Query: 139 ITTAQGEELKKLIGAA---VYIECSSKTQQNVKTVFDAAIKVV 178
+ A GA+ Y E S+K + NV F+ ++ V
Sbjct: 134 RSEASA------FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 63
+R K + +GD VGKTC+ + + FP T+ +F V +DG + + LWDTA
Sbjct: 27 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 64 GQEDYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTK 120
GQE + + + YR + + + AS+ ++ WI E + + A +P +LVG K
Sbjct: 87 GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNK 145
Query: 121 QDLR 124
DLR
Sbjct: 146 CDLR 149
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
K + +G+ GK+C+L + F D T+ F + ++ V G V L +WDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLR 124
E + + YRGA LL + + S+ +Y N W+ + R A + I+L G K+DL
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
D++ + A+ AQ EL +++E S+ T ++V+ F + +L
Sbjct: 127 ADRE--VTFLEASRF--AQENEL-------MFLETSALTGEDVEEAFVQCARKIL 170
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAP----TVPIVLVGTK 120
E + L YRGAD +L F + + +++ + W E L +P P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DL E++Q + T + + Y E S+K NV+ F + L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAP----TVPIVLVGTK 120
E + L YRGAD +L F + + +++ + W E L +P P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DL E++Q + T + + Y E S+K NV+ F + L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YVPT+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 64
R +K +GD VGK+ ++ + ++F + PT+ +F V + ++ L WDTAG
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDL 123
QE + L P+ YRG+ ++ + + + ++ + K W+ ELR H P++ + + G K DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ ++ + ++ I A+++E S+K N+ +F
Sbjct: 123 TDVRE----------VMERDAKDYADSI-HAIFVETSAKNAININELF 159
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
M R+ K V +G VGKT + + F Y PTV + +S V + +L L D
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 62 TAGQEDYNRLRPLSY-RGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGT 119
TAGQ++Y+ L P S+ G ++L +S+ S S++ I + + T VP+VLVG
Sbjct: 79 TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
K DL +++ + +G++L + GA ++E S++ Q + +F I+ +
Sbjct: 138 KADLSPERE----------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEI 185
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
+K G VGK+ +++ + + F +Y PT+ + +D V++ + DTAGQED
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENI--SKKWIPELRHYAPTVPIVLVGTKQDLRE 125
+ R R + F+L + + + S+E + K + E++ V ++LVG K DL
Sbjct: 89 TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH 146
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVF 171
+Q ++T +GE+L + A Y ECS+ T + N+ +F
Sbjct: 147 SRQ----------VSTEEGEKLATELACAFY-ECSACTGEGNITEIF 182
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YVPT+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAP----TVPIVLVGTK 120
E + L YRGAD +L F + + +++ + W E L +P P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
D E++Q + T + + Y E S+K NV+ F + L+
Sbjct: 127 IDF-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I + F DY PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 80 DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
D FL+ +S+ KAS+E++ + LR + P++LV K DL ++
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
+T QG+E+ YIE S+K NV F ++V+ Q
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I + F DY PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 80 DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
D FL+ +S+ KAS+E++ + LR + P++LV K DL ++
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 135
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
+T QG+E+ YIE S+K NV F ++V+ Q
Sbjct: 136 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 177
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 64
R +K +GD VGK+ ++ + ++F + PT+ +F V + ++ L WDTAG
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDL 123
E + L P+ YRG+ ++ + + + ++ + K W+ ELR H P++ + + G K DL
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 123
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ ++ + ++ I A+++E S+K N+ +F
Sbjct: 124 TDVRE----------VMERDAKDYADSI-HAIFVETSAKNAININELF 160
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
Y LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I + F +Y PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 80 DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
D FL+ +S+ KAS+E++ + LR + P++LV K DL ++
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
+T QG+E+ YIE S+K NV F ++V+ Q
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAP----TVPIVLVGTK 120
E + L YRGAD +L F + + +++ + W E L +P P V++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
DL E++Q + T + + Y E S+K NV+ F + L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 127 K 127
K
Sbjct: 123 K 123
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + I + F +Y PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 80 DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
D FL+ +S+ KAS+E++ + LR + P++LV K DL ++
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
+T QG+E+ YIE S+K NV F ++V+ Q
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 127 K 127
K
Sbjct: 135 K 135
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F Y+ T+ + + + + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D++E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 127 K 127
K
Sbjct: 125 K 125
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F Y+ T+ + + + + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D++E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K A IT + + L+ Y + S+K+ N + F
Sbjct: 124 K------VKAKTITFHRKKNLQ-------YYDISAKSNYNFEKPF 155
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F Y+ T+ + + + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D++E
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 127 K 127
K
Sbjct: 132 K 132
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ + + + + TF Y PT+ D + + VD S L + DTAG E + +R L +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 80 DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDL 123
F+L +SL+++ S+++I + I ++ Y VP++LVG K DL
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDL 120
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ L Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 127 K 127
K
Sbjct: 132 K 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 127 K 127
K
Sbjct: 126 K 126
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
M ++ K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 62 TAGQEDYNRLRPLSYRGADV--FLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVG 118
TAGQ++Y+ + P +Y D+ ++L +S+ S S+E I L +PI+LVG
Sbjct: 61 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118
Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAI 175
K+DL ++ I+ +G+ L + AA ++E S+K Q VF I
Sbjct: 119 NKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRII 164
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + F YV T+ V + + +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
K
Sbjct: 130 K 130
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 20 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
K+ +++ + TF Y+PT+ D + + D S L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 80 DVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
F+L FS+ SK S E + K I +++ +P++LVG K D + Q ++ A
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD---ETQREVDTREAQ 137
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ +E K ++E S+K NVK +F
Sbjct: 138 AV----AQEWK-----CAFMETSAKMNYNVKELF 162
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 69 NRLRPLSYR-GADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRED 126
+ + P +Y + ++L +S+ S S+E I L +PI+LVG K+DL +
Sbjct: 63 S-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
+ I+ +G+ L + AA ++E S+K Q VF
Sbjct: 122 R----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 155
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Query: 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
M ++ K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 62 TAGQEDYNRLRPLSYR-GADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGT 119
TAGQ++Y+ + P +Y + ++L +S+ S S+E I L +PI+LVG
Sbjct: 61 TAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
K+DL ++ I+ +G+ L + AA ++E S+K Q VF
Sbjct: 120 KKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 160
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7 FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 61
+ + V +G+ VGK+ + + + ++ +D D + ++VDG + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
G+ ++ L + D +L+ +S+ +AS+E S+ I +LR T +PI+LVG
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIILVGN 122
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
K DL ++ ++ A + + +IE S+ Q NVK +F+ ++ V
Sbjct: 123 KSDLVRXREVSVSEGRAXAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7 FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 61
+ + V +G+ VGK+ + + + ++ +D D + ++VDG + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
G+ ++ L + D +L+ +S+ +AS+E S+ I +LR T +PI+LVG
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIILVGN 122
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
K DL ++ ++ A + + +IE S+ Q NVK +F+ ++ V
Sbjct: 123 KSDLVRXREVSVSEGRAXAV-----------VFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
K V VGDG GKT + + + YV T+ V + + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
+ LR Y A ++ F + S+ +Y+N+ W +L +PIVL G K D+++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 127 K 127
K
Sbjct: 135 K 135
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7 FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 61
+ + V +G+ VGK+ + + + ++ +D D + ++VDG + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
G+ ++ L + D +L+ +S+ +AS+E S+ I +LR T +PI+LVG
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIILVGN 122
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
K DL ++ ++ A + + +IE S+ Q NVK +F+ ++ V
Sbjct: 123 KSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7 FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 61
+ + V +G+ VGK+ + + + ++ +D D + ++VDG + L +W+
Sbjct: 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
G+ ++ L + D +L+ +S+ +AS+E S+ I +LR T +PI+LVG
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIILVGN 153
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
K DL ++ ++ A + + +IE S+ Q NVK +F+ ++ V
Sbjct: 154 KSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 16/166 (9%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
K +G +VGK+ + I + F PT+ + F+ + V+G +L L DTAGQ++Y
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65
Query: 69 NRLRPLSYRGADV--FLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRE 125
+ + P +Y D+ ++L +S+ S S+E I L +PI+LVG K+DL
Sbjct: 66 S-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
++ I+ +G+ L + AA ++E S+K Q VF
Sbjct: 124 ER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 158
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLWDTA 63
R +K V +GDGA GKT + + TF Y T+ D F + + G+ V L +WD
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKW---IPELRHYAPTVPIV-LVGT 119
GQ ++ GA LL + + + S+EN+ + W + ++ + T P+V LVG
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGN 123
Query: 120 KQDLRE 125
K DL
Sbjct: 124 KIDLEH 129
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVD-GSTVNLGLWDTAGQE 66
K +GDG VGKT + F +Y TV N + D G+ + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRH-YAPTVPIVLVGTKQDLRE 125
L+ + Y GA +L F + S+ + +N++ +W+ E + PIV+ K D++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
++ I+ + + E Y E S+KT N F
Sbjct: 132 RQK--ISKKLVMEVLKGKNYE---------YFEISAKTAHNFGLPF 166
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQE 66
K + VG+ VGK+ + ++ + + P D + ++VD V L ++D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 67 DYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP--TVPIVLVGTKQDL 123
D LR + D FL+ FS+ + S+ + + + LR P +P++LVG K DL
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 142
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVV 178
++ + EE + L G + +IE S+ N + +F+ A++ +
Sbjct: 143 ARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 28/124 (22%)
Query: 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI 114
+ +WDTAGQE Y + PL YRGA ++ F IS ++ + +K W+ +L+ + I
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQLK-ISSNYII 150
Query: 115 VLVGTK-------QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167
+LV K D+ E ++Y AQ L ++I+ S+KT N+
Sbjct: 151 ILVANKIDKNKFQVDILEVQKY------------AQDNNL-------LFIQTSAKTGTNI 191
Query: 168 KTVF 171
K +F
Sbjct: 192 KNIF 195
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT--AGQE 66
+ V +GD VGKT + + + D + + VDG L + DT A +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLRE 125
D + + +G +++ +S+ + S+E+ S+ I R H A VPI+LVG K DL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
++ + A + + +IE S+ Q NV +F+
Sbjct: 126 CREVSVEEGRACAV-----------VFDCKFIETSATLQHNVAELFEG 162
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQ 65
K + VG+ VGK+ + + T D+ + D + ++VD V L ++D Q
Sbjct: 4 KVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 66 EDYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP--TVPIVLVGTKQD 122
D L+ + D FL+ FS+ + S+ + + + LR P +P++LVG K D
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 120
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVV 178
L ++ + EE + L G + +IE S+ N + +F+ A++ +
Sbjct: 121 LARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 9 KCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
K + +G+ VGK+ + ++ + + D + ++VD V L ++D Q D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 68 YNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP--TVPIVLVGTKQDLR 124
L+ + D FL+ FS+ + S+ + + + LR P +P++LVG K DL
Sbjct: 74 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 132
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVV 178
++ + EE + L G + +IE S+ N + +F+ A++ +
Sbjct: 133 RSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 44 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIP 103
+ ++VVDG +L ++D Q+ L D +++ +S+ K S+E S+ +
Sbjct: 38 YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV- 96
Query: 104 ELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161
+LR T VPI+LVG K DL ++ ++ A + + +IE S+
Sbjct: 97 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 145
Query: 162 KTQQNVKTVFDAAIK 176
NV+ +F+ ++
Sbjct: 146 ALHHNVQALFEGVVR 160
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 44 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIP 103
+ ++VVDG +L ++D Q+ L D +++ +S+ K S+E S+ +
Sbjct: 43 YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV- 101
Query: 104 ELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161
+LR T VPI+LVG K DL ++ ++ A + + +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 162 KTQQNVKTVFDAAIKVV 178
NV+ +F+ ++ +
Sbjct: 151 ALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 44 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIP 103
+ ++VVDG +L ++D Q+ L D +++ +S+ K S+E S+ +
Sbjct: 43 YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV- 101
Query: 104 ELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161
+LR T VPI+LVG K DL ++ ++ A + + +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 162 KTQQNVKTVFDAAIKVV 178
NV+ +F+ ++ +
Sbjct: 151 ALHHNVQALFEGVVRQI 167
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
+ +G GK+ + + + + F ++Y P + D +S+ VD V+L + DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 68 -YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP----TVPIVLVGTKQD 122
N R L++ A FL+ +S + + S ++ L +A ++P +L+G K D
Sbjct: 82 PRNCERYLNW--AHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
+ + +Q +T A+G L G + + ++V+ VF A++
Sbjct: 139 MAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
+K VG+ + GK+ ++ Y + T+ + P F +VVDG + L + D G +
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIP--ELRHYAPTVPIVLVGTKQDLRE 125
L+ ++ A VF+ FSL + S++ + ++ R+ A VP+VLVGT+ +
Sbjct: 80 ---LQFAAWVDAVVFV--FSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISA 133
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF-DAAIKVV 178
+I+ A ++T +LK+ Y E + NV+ VF D A KVV
Sbjct: 134 ANPRVIDDSRARKLST----DLKR----CTYYETCATYGLNVERVFQDVAQKVV 179
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVL 116
L +WD AG+E++ P ++L + L + + K W+ ++ A + P++L
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 117 VGTKQDLREDKQ 128
VGT D+ ++KQ
Sbjct: 116 VGTHLDVSDEKQ 127
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVL 116
L +WD AG+E++ P ++L + L + + K W+ ++ A + P++L
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 117 VGTKQDLREDKQ 128
VGT D+ ++KQ
Sbjct: 118 VGTHLDVSDEKQ 129
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 9 KCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTV-FDNFSANVVVDGSTVN--LGLWDTA 63
K VG+ VGK+ ++ +TS + F DY T + A V + +TV+ L L DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT----VPIVLVGT 119
G + Y + G +L F + S S+E+ K W L+ P + VLV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140
Query: 120 KQDL 123
K DL
Sbjct: 141 KTDL 144
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 13 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72
VG GKT + S F D +PTV F+ V G+ V + +WD GQ + +
Sbjct: 28 VGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMW 84
Query: 73 PLSYRGADVFLLAFSLISKASYENI--SKKWIPEL--RHYAPTVPIVLVGTKQDL 123
RG + + +I A E I S+ + L + +P++++G K+DL
Sbjct: 85 ERYCRGVNAIVY---MIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 21/128 (16%)
Query: 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-------- 59
IK +GDG GKT +L TF P NVV + GL
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKE 97
Query: 60 -----WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI 114
WD GQE + + V++L + ++ W+ + Y P+
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSN----KHYWLRHIEKYGGKSPV 153
Query: 115 VLVGTKQD 122
++V K D
Sbjct: 154 IVVMNKID 161
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 9 KCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ- 65
K + +G GK+ M +I + F T + D +++ G+ + L LWD GQ
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQD 66
Query: 66 ---EDY-NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGT 119
E+Y + + ++ V + F + S ++I K + +LR Y+P I ++
Sbjct: 67 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 126
Query: 120 KQDL 123
K DL
Sbjct: 127 KMDL 130
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 104 ELRHYAP--TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161
+LR AP VP +++ DL ATP AQG EL + I A Y+E +
Sbjct: 197 DLRPEAPGIKVPALVISGTHDL-----------AATP---AQGRELAQAIAGARYVELDA 242
Query: 162 KTQQNVKTVFDAAIKVVL 179
N++ DA K V+
Sbjct: 243 SHISNIERA-DAFTKTVV 259
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 43 NFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF 82
++ VD + +++ LWD AGQE +R L G D F
Sbjct: 113 GYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSF 153
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 43 NFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF 82
++ VD + +++ LWD AGQE +R L G D F
Sbjct: 133 GYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSF 173
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 13 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72
V +G G+ L + T D++P V G L+ GQ YN R
Sbjct: 38 VPEGRKGEMVSLATEDERTLFFDFLPLDIGE------VKGFKTRFHLYTVPGQVFYNASR 91
Query: 73 PLSYRGAD-VFLLAFSLISKASYENISKKWIPE-LRHYAPT---VPIVLVGTKQDL 123
L RG D + +A S ++ S + + E L Y T VPIV+ K+DL
Sbjct: 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDL 147
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 16/146 (10%)
Query: 13 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72
V +G G+ L + T D++P V G L+ GQ YN R
Sbjct: 38 VPEGRKGEXVSLATEDERTLFFDFLPLDIGE------VKGFKTRFHLYTVPGQVFYNASR 91
Query: 73 PLSYRGAD-VFLLAFSLISKASYENISKKWIPE-LRHYAPT---VPIVLVGTKQDLR--- 124
L RG D + +A S ++ S + E L Y T VPIV+ K+DL
Sbjct: 92 KLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLDDVPIVIQVNKRDLPDAL 151
Query: 125 --EDKQYLINHPGATPITTAQGEELK 148
E + +++ G P+ A E K
Sbjct: 152 PVEXVRAVVDPEGKFPVLEAVATEGK 177
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 101 WIPELRHYAPTVPIVLVGTKQDL-----REDK-----QYLINHPGATP-----ITTAQGE 145
W+P L + ++LVG K DL + DK +Y G P I+ A+G+
Sbjct: 86 WLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQ 145
Query: 146 ELKKLIGAAVY 156
+ +L A Y
Sbjct: 146 GIAELADAIEY 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,367,507
Number of Sequences: 62578
Number of extensions: 219709
Number of successful extensions: 1134
Number of sequences better than 100.0: 302
Number of HSP's better than 100.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 303
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)