Query 029177
Match_columns 197
No_of_seqs 133 out of 1624
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:44:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 7.4E-43 1.6E-47 241.5 17.5 166 5-181 7-174 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 2.2E-41 4.8E-46 233.3 19.4 168 5-184 3-172 (200)
3 cd01875 RhoG RhoG subfamily. 100.0 3.4E-40 7.3E-45 238.2 22.2 188 6-197 2-191 (191)
4 cd04133 Rop_like Rop subfamily 100.0 3.8E-39 8.2E-44 229.2 22.6 174 8-181 2-175 (176)
5 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.7E-39 8.1E-44 237.4 21.6 176 6-181 12-190 (232)
6 cd04121 Rab40 Rab40 subfamily. 100.0 3.9E-39 8.4E-44 231.5 21.0 167 5-183 4-171 (189)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.5E-39 9.7E-44 230.1 21.1 177 4-180 2-181 (182)
8 KOG0078 GTP-binding protein SE 100.0 2.2E-39 4.7E-44 227.3 17.5 167 4-182 9-177 (207)
9 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4.5E-39 9.7E-44 222.1 17.9 165 5-181 20-187 (221)
10 cd04134 Rho3 Rho3 subfamily. 100.0 4.1E-38 8.8E-43 227.0 22.4 186 9-197 2-189 (189)
11 cd04131 Rnd Rnd subfamily. Th 100.0 2.5E-38 5.5E-43 225.7 21.1 172 8-179 2-176 (178)
12 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.7E-38 8.1E-43 231.0 21.6 174 8-181 2-178 (222)
13 cd04144 Ras2 Ras2 subfamily. 100.0 1.3E-38 2.7E-43 229.9 18.7 177 9-197 1-190 (190)
14 cd04132 Rho4_like Rho4-like su 100.0 3.4E-38 7.3E-43 227.1 20.7 184 8-197 1-187 (187)
15 KOG0394 Ras-related GTPase [Ge 100.0 1.1E-38 2.4E-43 218.1 15.9 171 4-183 6-182 (210)
16 KOG0098 GTPase Rab2, small G p 100.0 1E-38 2.3E-43 218.6 15.1 168 2-181 1-170 (216)
17 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.8E-37 3.8E-42 221.0 21.8 172 7-178 1-174 (175)
18 cd04120 Rab12 Rab12 subfamily. 100.0 1.9E-37 4.1E-42 224.7 20.0 163 8-181 1-165 (202)
19 PTZ00369 Ras-like protein; Pro 100.0 2.1E-37 4.5E-42 223.4 19.9 180 6-197 4-189 (189)
20 KOG0080 GTPase Rab18, small G 100.0 1.9E-37 4E-42 207.6 16.1 166 5-182 9-177 (209)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 5.5E-37 1.2E-41 218.0 19.2 164 7-182 2-167 (172)
22 cd01871 Rac1_like Rac1-like su 100.0 1.6E-36 3.5E-41 215.9 21.1 170 8-177 2-173 (174)
23 KOG0079 GTP-binding protein H- 100.0 3.2E-38 7E-43 208.5 10.3 164 6-181 7-171 (198)
24 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.1E-36 4.5E-41 220.2 20.4 165 8-183 1-172 (201)
25 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.3E-37 1.1E-41 214.5 15.3 165 5-181 12-178 (222)
26 KOG0393 Ras-related small GTPa 100.0 5.3E-37 1.1E-41 216.2 15.0 179 5-183 2-183 (198)
27 cd04110 Rab35 Rab35 subfamily. 100.0 7.6E-36 1.6E-40 216.8 20.9 165 5-181 4-169 (199)
28 smart00174 RHO Rho (Ras homolo 100.0 1.3E-35 2.8E-40 211.3 21.6 171 10-180 1-173 (174)
29 cd04109 Rab28 Rab28 subfamily. 100.0 1.1E-35 2.3E-40 218.5 20.3 162 8-181 1-168 (215)
30 cd04122 Rab14 Rab14 subfamily. 100.0 1.5E-35 3.2E-40 209.5 19.7 162 7-180 2-165 (166)
31 cd04136 Rap_like Rap-like subf 100.0 2E-35 4.3E-40 208.1 19.2 159 8-178 2-162 (163)
32 cd04125 RabA_like RabA-like su 100.0 5.7E-35 1.2E-39 210.5 20.9 177 8-196 1-187 (188)
33 cd04175 Rap1 Rap1 subgroup. T 100.0 3.3E-35 7.1E-40 207.3 19.0 160 8-179 2-163 (164)
34 cd01867 Rab8_Rab10_Rab13_like 100.0 5.2E-35 1.1E-39 206.9 19.6 163 6-180 2-166 (167)
35 cd04112 Rab26 Rab26 subfamily. 100.0 6.1E-35 1.3E-39 210.9 19.9 162 8-181 1-165 (191)
36 cd04135 Tc10 TC10 subfamily. 100.0 1.8E-34 4E-39 205.3 22.0 172 8-179 1-174 (174)
37 cd04117 Rab15 Rab15 subfamily. 100.0 7.5E-35 1.6E-39 204.9 19.5 158 8-177 1-160 (161)
38 cd04126 Rab20 Rab20 subfamily. 100.0 9.3E-35 2E-39 212.9 20.4 168 8-179 1-190 (220)
39 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2E-34 4.3E-39 205.1 21.5 170 8-177 1-172 (173)
40 KOG0086 GTPase Rab4, small G p 100.0 5E-36 1.1E-40 199.3 12.0 172 1-184 1-176 (214)
41 PF00071 Ras: Ras family; Int 100.0 6.8E-35 1.5E-39 205.2 18.0 159 9-179 1-161 (162)
42 cd01865 Rab3 Rab3 subfamily. 100.0 1.6E-34 3.4E-39 204.1 20.0 160 8-179 2-163 (165)
43 cd04127 Rab27A Rab27a subfamil 100.0 9.4E-35 2E-39 207.9 18.8 163 6-180 3-178 (180)
44 KOG0093 GTPase Rab3, small G p 100.0 1.3E-35 2.9E-40 195.9 13.0 165 6-182 20-186 (193)
45 PLN03071 GTP-binding nuclear p 100.0 1.8E-34 4E-39 212.2 20.7 164 5-182 11-175 (219)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.2E-34 4.8E-39 206.2 20.2 170 8-185 1-172 (182)
47 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.4E-34 5.3E-39 203.2 19.8 161 7-179 2-164 (166)
48 cd04129 Rho2 Rho2 subfamily. 100.0 6.8E-34 1.5E-38 204.7 22.4 186 8-196 2-187 (187)
49 cd04176 Rap2 Rap2 subgroup. T 100.0 2.5E-34 5.3E-39 202.6 19.3 159 8-178 2-162 (163)
50 cd01864 Rab19 Rab19 subfamily. 100.0 3E-34 6.6E-39 202.6 19.2 161 6-177 2-164 (165)
51 cd04124 RabL2 RabL2 subfamily. 100.0 5.5E-34 1.2E-38 200.6 20.2 159 8-181 1-160 (161)
52 smart00173 RAS Ras subfamily o 100.0 2.6E-34 5.6E-39 202.7 18.6 160 8-179 1-162 (164)
53 cd01873 RhoBTB RhoBTB subfamil 100.0 4.6E-34 9.9E-39 206.3 20.2 168 7-177 2-194 (195)
54 cd04140 ARHI_like ARHI subfami 100.0 3.2E-34 7E-39 202.5 19.0 158 8-177 2-163 (165)
55 cd04118 Rab24 Rab24 subfamily. 100.0 1.1E-33 2.3E-38 204.7 22.0 166 8-181 1-168 (193)
56 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.4E-34 9.6E-39 200.8 19.2 158 8-178 2-161 (162)
57 cd00877 Ran Ran (Ras-related n 100.0 8.6E-34 1.9E-38 200.5 20.5 159 8-180 1-160 (166)
58 cd04119 RJL RJL (RabJ-Like) su 100.0 4.2E-34 9E-39 202.0 18.9 160 8-179 1-167 (168)
59 cd04106 Rab23_lke Rab23-like s 100.0 3.8E-34 8.3E-39 201.4 18.4 158 8-177 1-161 (162)
60 cd04145 M_R_Ras_like M-Ras/R-R 100.0 7.3E-34 1.6E-38 200.3 19.0 160 7-178 2-163 (164)
61 cd04116 Rab9 Rab9 subfamily. 100.0 1.2E-33 2.6E-38 200.5 19.9 162 4-177 2-169 (170)
62 KOG0091 GTPase Rab39, small G 100.0 7.2E-35 1.6E-39 195.7 12.6 162 6-179 7-173 (213)
63 cd01870 RhoA_like RhoA-like su 100.0 3.5E-33 7.6E-38 198.9 21.7 171 8-178 2-174 (175)
64 cd04111 Rab39 Rab39 subfamily. 100.0 8.5E-34 1.8E-38 207.6 18.9 163 7-181 2-168 (211)
65 KOG0095 GTPase Rab30, small G 100.0 1E-34 2.2E-39 192.4 12.3 164 5-180 5-170 (213)
66 cd01868 Rab11_like Rab11-like. 100.0 1.7E-33 3.7E-38 198.7 19.5 161 6-178 2-164 (165)
67 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.7E-33 3.7E-38 199.6 19.2 162 9-180 2-166 (170)
68 cd04103 Centaurin_gamma Centau 100.0 1.8E-33 4E-38 197.1 19.0 155 8-177 1-157 (158)
69 PLN03110 Rab GTPase; Provision 100.0 1.7E-33 3.8E-38 206.7 19.6 162 6-179 11-174 (216)
70 KOG0088 GTPase Rab21, small G 100.0 7.4E-35 1.6E-39 194.8 11.2 165 5-181 11-177 (218)
71 cd01866 Rab2 Rab2 subfamily. 100.0 3.3E-33 7.1E-38 197.9 20.0 163 6-180 3-167 (168)
72 cd04142 RRP22 RRP22 subfamily. 100.0 3.6E-33 7.8E-38 202.2 20.4 165 8-184 1-179 (198)
73 cd04113 Rab4 Rab4 subfamily. 100.0 2.4E-33 5.3E-38 197.1 18.7 158 8-177 1-160 (161)
74 PLN03108 Rab family protein; P 100.0 2.4E-33 5.3E-38 205.2 19.3 168 2-181 1-170 (210)
75 cd04177 RSR1 RSR1 subgroup. R 100.0 4.1E-33 8.8E-38 197.4 19.9 161 8-179 2-164 (168)
76 cd04115 Rab33B_Rab33A Rab33B/R 100.0 5.3E-33 1.1E-37 197.2 19.4 160 7-178 2-168 (170)
77 cd04143 Rhes_like Rhes_like su 100.0 4.1E-33 8.9E-38 207.9 19.4 161 8-179 1-171 (247)
78 smart00176 RAN Ran (Ras-relate 100.0 4.5E-33 9.8E-38 201.5 19.0 155 13-181 1-156 (200)
79 cd00157 Rho Rho (Ras homology) 100.0 1.3E-32 2.8E-37 195.2 20.3 169 8-176 1-170 (171)
80 cd04146 RERG_RasL11_like RERG/ 100.0 4.4E-33 9.5E-38 196.7 17.5 159 9-179 1-164 (165)
81 cd01892 Miro2 Miro2 subfamily. 100.0 1.2E-32 2.6E-37 195.2 18.8 164 5-180 2-167 (169)
82 smart00175 RAB Rab subfamily o 100.0 1.6E-32 3.4E-37 193.4 19.1 161 8-180 1-163 (164)
83 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.5E-32 3.2E-37 193.7 18.6 159 8-178 1-163 (164)
84 cd01862 Rab7 Rab7 subfamily. 100.0 3.3E-32 7.1E-37 193.2 19.4 163 8-181 1-169 (172)
85 cd04137 RheB Rheb (Ras Homolog 100.0 2.9E-32 6.3E-37 195.1 18.7 178 8-197 2-180 (180)
86 cd01860 Rab5_related Rab5-rela 100.0 4.5E-32 9.7E-37 191.0 19.3 159 8-178 2-162 (163)
87 cd01861 Rab6 Rab6 subfamily. 100.0 3.7E-32 8E-37 191.0 18.8 158 8-177 1-160 (161)
88 KOG0395 Ras-related GTPase [Ge 100.0 2.5E-32 5.4E-37 196.3 16.8 163 6-180 2-166 (196)
89 cd04148 RGK RGK subfamily. Th 100.0 6.5E-32 1.4E-36 198.9 19.4 160 8-181 1-165 (221)
90 PLN03118 Rab family protein; P 100.0 1.2E-31 2.5E-36 196.6 20.4 166 5-182 12-180 (211)
91 cd04123 Rab21 Rab21 subfamily. 100.0 1.2E-31 2.6E-36 188.3 19.4 159 8-178 1-161 (162)
92 cd01863 Rab18 Rab18 subfamily. 100.0 2.5E-31 5.3E-36 186.9 19.9 157 8-177 1-160 (161)
93 cd04139 RalA_RalB RalA/RalB su 100.0 2.3E-31 4.9E-36 187.4 19.0 160 8-179 1-162 (164)
94 cd01893 Miro1 Miro1 subfamily. 100.0 2.9E-31 6.3E-36 187.6 18.4 164 8-180 1-165 (166)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.2E-31 2.5E-36 192.4 16.2 172 6-191 2-182 (183)
96 cd04114 Rab30 Rab30 subfamily. 100.0 9.8E-31 2.1E-35 185.2 20.5 162 5-178 5-168 (169)
97 KOG0081 GTPase Rab27, small G 100.0 1.1E-33 2.3E-38 189.4 4.5 164 6-181 8-183 (219)
98 cd04149 Arf6 Arf6 subfamily. 100.0 2.8E-31 6.1E-36 187.9 16.2 156 5-176 7-167 (168)
99 cd00876 Ras Ras family. The R 100.0 7.5E-31 1.6E-35 183.9 16.7 157 9-177 1-159 (160)
100 PLN00223 ADP-ribosylation fact 100.0 8.6E-31 1.9E-35 187.5 16.9 157 5-180 15-179 (181)
101 cd00154 Rab Rab family. Rab G 100.0 1.6E-30 3.4E-35 181.7 17.6 156 8-175 1-158 (159)
102 cd04147 Ras_dva Ras-dva subfam 100.0 2.5E-30 5.3E-35 187.8 18.3 160 9-179 1-163 (198)
103 KOG0097 GTPase Rab14, small G 100.0 3.9E-31 8.5E-36 174.0 12.6 164 5-180 9-174 (215)
104 smart00177 ARF ARF-like small 100.0 3.3E-30 7.2E-35 183.6 17.6 159 5-179 11-174 (175)
105 cd04158 ARD1 ARD1 subfamily. 100.0 3.6E-30 7.9E-35 182.5 17.4 156 9-181 1-163 (169)
106 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.9E-31 8.5E-36 186.5 11.7 152 10-176 2-163 (164)
107 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.7E-32 3.7E-37 178.6 4.2 159 11-181 1-162 (192)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.9E-30 8.4E-35 180.6 16.3 153 8-176 1-158 (159)
109 PTZ00132 GTP-binding nuclear p 100.0 1.8E-29 4E-34 185.5 20.6 167 2-182 4-171 (215)
110 PTZ00133 ADP-ribosylation fact 100.0 4.6E-30 9.9E-35 183.9 16.8 159 6-180 16-179 (182)
111 cd04154 Arl2 Arl2 subfamily. 100.0 3.9E-29 8.4E-34 177.8 16.5 155 5-176 12-172 (173)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1E-28 2.2E-33 175.8 16.5 155 5-176 13-173 (174)
113 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.9E-28 4.1E-33 177.4 16.1 145 8-164 1-175 (202)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 4.2E-29 9.1E-34 176.7 12.4 157 9-176 1-166 (167)
115 cd04157 Arl6 Arl6 subfamily. 100.0 1.6E-28 3.4E-33 172.6 15.1 152 9-176 1-161 (162)
116 cd00879 Sar1 Sar1 subfamily. 100.0 3.9E-28 8.5E-33 175.1 16.3 157 4-177 16-189 (190)
117 PF00025 Arf: ADP-ribosylation 100.0 1.4E-27 3.1E-32 169.9 17.7 160 3-178 10-175 (175)
118 cd04151 Arl1 Arl1 subfamily. 100.0 8.2E-28 1.8E-32 168.6 15.7 151 9-176 1-157 (158)
119 PLN00023 GTP-binding protein; 100.0 1.3E-27 2.9E-32 181.1 17.3 147 5-156 19-192 (334)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.1E-27 2.4E-32 169.2 14.9 152 9-176 1-166 (167)
121 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.3E-27 2.8E-32 167.8 14.7 151 9-176 1-159 (160)
122 smart00178 SAR Sar1p-like memb 100.0 1.8E-27 4E-32 170.8 15.7 156 5-177 15-183 (184)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3.6E-27 7.8E-32 165.2 16.2 151 9-176 1-157 (158)
124 PTZ00099 rab6; Provisional 99.9 3.2E-26 7E-31 162.8 17.4 143 30-184 3-147 (176)
125 cd01897 NOG NOG1 is a nucleola 99.9 3.4E-26 7.3E-31 161.8 16.6 154 9-178 2-167 (168)
126 cd01890 LepA LepA subfamily. 99.9 1.8E-26 4E-31 164.8 14.9 155 9-179 2-177 (179)
127 cd04159 Arl10_like Arl10-like 99.9 5.4E-26 1.2E-30 158.7 15.9 151 10-176 2-158 (159)
128 KOG0073 GTP-binding ADP-ribosy 99.9 7.1E-26 1.5E-30 152.5 15.7 165 4-180 13-179 (185)
129 KOG4252 GTP-binding protein [S 99.9 2E-28 4.3E-33 167.2 2.5 163 6-180 19-182 (246)
130 cd04155 Arl3 Arl3 subfamily. 99.9 1.2E-25 2.6E-30 159.7 15.4 153 5-176 12-172 (173)
131 COG1100 GTPase SAR1 and relate 99.9 2.7E-25 5.8E-30 163.7 16.4 178 7-184 5-190 (219)
132 KOG0070 GTP-binding ADP-ribosy 99.9 1.3E-25 2.9E-30 154.8 13.6 162 4-181 14-180 (181)
133 TIGR00231 small_GTP small GTP- 99.9 5.8E-25 1.3E-29 153.1 16.8 156 8-175 2-160 (161)
134 cd01898 Obg Obg subfamily. Th 99.9 2.3E-25 5E-30 157.7 14.8 156 9-177 2-169 (170)
135 TIGR02528 EutP ethanolamine ut 99.9 3.8E-26 8.1E-31 157.4 10.4 135 9-175 2-141 (142)
136 PRK12299 obgE GTPase CgtA; Rev 99.9 5.4E-25 1.2E-29 170.3 16.6 160 8-180 159-329 (335)
137 cd04171 SelB SelB subfamily. 99.9 1.3E-24 2.9E-29 152.8 14.0 153 9-176 2-163 (164)
138 cd01878 HflX HflX subfamily. 99.9 2E-24 4.3E-29 157.5 14.4 154 6-177 40-203 (204)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.3E-24 1.4E-28 150.0 15.4 158 9-179 2-166 (168)
140 PRK15494 era GTPase Era; Provi 99.9 1E-23 2.2E-28 164.2 17.5 157 5-180 50-217 (339)
141 cd00882 Ras_like_GTPase Ras-li 99.9 1E-23 2.2E-28 145.6 15.1 153 12-175 1-156 (157)
142 cd01894 EngA1 EngA1 subfamily. 99.9 8.3E-24 1.8E-28 147.6 14.2 146 11-177 1-156 (157)
143 TIGR00436 era GTP-binding prot 99.9 1.2E-23 2.6E-28 159.5 15.8 155 9-181 2-166 (270)
144 PF08477 Miro: Miro-like prote 99.9 5E-24 1.1E-28 142.4 11.8 114 9-122 1-119 (119)
145 KOG3883 Ras family small GTPas 99.9 5E-23 1.1E-27 137.3 16.2 168 6-185 8-181 (198)
146 PRK04213 GTP-binding protein; 99.9 2.2E-24 4.7E-29 157.0 10.5 156 6-182 8-195 (201)
147 cd01879 FeoB Ferrous iron tran 99.9 3.2E-23 7E-28 144.9 15.1 147 12-178 1-156 (158)
148 TIGR02729 Obg_CgtA Obg family 99.9 3.1E-23 6.8E-28 160.4 15.7 158 7-178 157-328 (329)
149 TIGR03156 GTP_HflX GTP-binding 99.9 2E-23 4.4E-28 162.7 14.4 152 6-177 188-350 (351)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.2E-23 9.2E-28 165.2 16.5 150 6-180 202-361 (442)
151 PRK03003 GTP-binding protein D 99.9 2.4E-23 5.3E-28 168.8 15.2 160 6-179 210-382 (472)
152 cd01881 Obg_like The Obg-like 99.9 2.7E-23 5.9E-28 147.8 13.6 152 12-177 1-175 (176)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.8E-23 1.9E-27 142.4 15.5 145 8-178 2-156 (157)
154 cd01891 TypA_BipA TypA (tyrosi 99.9 3.8E-23 8.2E-28 149.6 13.9 147 8-168 3-171 (194)
155 PRK03003 GTP-binding protein D 99.9 3.5E-23 7.5E-28 167.9 15.0 153 7-180 38-200 (472)
156 KOG0075 GTP-binding ADP-ribosy 99.9 7.4E-24 1.6E-28 140.3 8.5 154 7-178 20-181 (186)
157 PRK05291 trmE tRNA modificatio 99.9 4.2E-23 9.1E-28 166.0 14.7 147 7-180 215-371 (449)
158 TIGR03594 GTPase_EngA ribosome 99.9 2E-22 4.3E-27 162.3 18.2 157 6-179 171-344 (429)
159 PF02421 FeoB_N: Ferrous iron 99.9 4.6E-23 1E-27 142.1 12.3 147 8-174 1-156 (156)
160 cd00881 GTP_translation_factor 99.9 9E-23 2E-27 146.7 14.4 157 9-179 1-187 (189)
161 cd04163 Era Era subfamily. Er 99.9 1.3E-22 2.8E-27 142.6 14.4 155 7-177 3-167 (168)
162 TIGR01393 lepA GTP-binding pro 99.9 1.9E-22 4.2E-27 166.6 16.1 159 8-182 4-183 (595)
163 KOG0076 GTP-binding ADP-ribosy 99.9 1.1E-23 2.3E-28 143.4 6.7 169 2-181 12-189 (197)
164 TIGR00487 IF-2 translation ini 99.9 4.4E-22 9.5E-27 163.9 17.6 154 6-177 86-248 (587)
165 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-21 2.3E-26 139.0 17.2 155 7-177 2-173 (174)
166 KOG0071 GTP-binding ADP-ribosy 99.9 3.5E-22 7.5E-27 131.4 13.3 158 5-178 15-177 (180)
167 PRK15467 ethanolamine utilizat 99.9 1.7E-22 3.8E-27 141.4 12.8 142 9-181 3-149 (158)
168 PRK12297 obgE GTPase CgtA; Rev 99.9 9.1E-22 2E-26 156.0 17.3 158 8-182 159-330 (424)
169 TIGR03594 GTPase_EngA ribosome 99.9 2.9E-22 6.2E-27 161.4 14.2 152 9-181 1-162 (429)
170 PRK00089 era GTPase Era; Revie 99.9 1.1E-21 2.4E-26 150.5 16.8 159 6-180 4-172 (292)
171 cd01889 SelB_euk SelB subfamil 99.9 2.7E-22 5.8E-27 145.0 12.4 162 8-181 1-188 (192)
172 PRK00093 GTP-binding protein D 99.9 5.3E-22 1.1E-26 160.1 14.8 150 8-178 2-161 (435)
173 PRK12296 obgE GTPase CgtA; Rev 99.9 2.1E-21 4.5E-26 155.9 16.4 161 7-182 159-343 (500)
174 PRK11058 GTPase HflX; Provisio 99.9 1.8E-21 3.9E-26 155.1 15.9 156 8-180 198-363 (426)
175 CHL00189 infB translation init 99.9 1.2E-21 2.6E-26 163.6 15.0 156 6-178 243-409 (742)
176 PRK05433 GTP-binding protein L 99.9 1.7E-21 3.7E-26 161.2 14.8 166 1-182 1-187 (600)
177 TIGR03598 GTPase_YsxC ribosome 99.9 1E-21 2.2E-26 140.5 11.5 152 2-168 13-179 (179)
178 cd04105 SR_beta Signal recogni 99.9 2.9E-21 6.3E-26 140.5 14.1 118 9-126 2-124 (203)
179 PRK05306 infB translation init 99.9 5E-21 1.1E-25 161.2 17.4 158 6-177 289-450 (787)
180 PF00009 GTP_EFTU: Elongation 99.9 4.4E-21 9.6E-26 138.1 14.3 161 6-179 2-187 (188)
181 PRK00454 engB GTP-binding prot 99.9 4.3E-21 9.2E-26 139.0 14.1 159 5-178 22-193 (196)
182 cd01888 eIF2_gamma eIF2-gamma 99.9 3.6E-21 7.7E-26 140.2 13.5 159 8-181 1-201 (203)
183 TIGR00475 selB selenocysteine- 99.9 4.9E-21 1.1E-25 158.2 15.8 157 8-181 1-168 (581)
184 PRK00093 GTP-binding protein D 99.9 1.3E-20 2.9E-25 152.0 16.8 159 6-178 172-343 (435)
185 PRK12298 obgE GTPase CgtA; Rev 99.9 9.1E-21 2E-25 149.5 15.2 161 8-181 160-335 (390)
186 KOG1673 Ras GTPases [General f 99.9 4.5E-21 9.8E-26 128.3 11.0 167 7-181 20-188 (205)
187 PRK09518 bifunctional cytidyla 99.9 5.9E-21 1.3E-25 161.6 14.5 157 6-180 449-622 (712)
188 cd01896 DRG The developmentall 99.9 3.7E-20 8.1E-25 137.2 16.8 149 9-178 2-225 (233)
189 TIGR00491 aIF-2 translation in 99.9 9.2E-21 2E-25 155.9 14.6 163 9-178 6-215 (590)
190 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 4.1E-21 8.8E-26 132.6 10.2 162 7-182 10-172 (216)
191 PRK09518 bifunctional cytidyla 99.9 1.7E-20 3.6E-25 158.9 16.2 153 7-180 275-437 (712)
192 TIGR00437 feoB ferrous iron tr 99.9 1.7E-20 3.8E-25 155.1 15.5 145 14-178 1-154 (591)
193 COG2229 Predicted GTPase [Gene 99.9 5E-20 1.1E-24 127.1 15.0 158 4-177 7-176 (187)
194 cd00880 Era_like Era (E. coli 99.9 3E-20 6.5E-25 129.4 13.6 151 12-177 1-162 (163)
195 COG1159 Era GTPase [General fu 99.9 5.2E-20 1.1E-24 136.6 15.4 162 4-181 3-174 (298)
196 KOG4423 GTP-binding protein-li 99.9 3.1E-23 6.8E-28 142.6 -1.7 169 4-182 22-197 (229)
197 PRK12317 elongation factor 1-a 99.8 3E-20 6.6E-25 149.2 15.1 161 2-171 1-197 (425)
198 PRK09554 feoB ferrous iron tra 99.8 1.2E-19 2.6E-24 153.5 18.6 152 7-178 3-167 (772)
199 KOG0072 GTP-binding ADP-ribosy 99.8 6.1E-21 1.3E-25 126.1 8.0 161 4-180 15-180 (182)
200 COG0486 ThdF Predicted GTPase 99.8 3.5E-20 7.7E-25 144.9 13.5 152 7-181 217-378 (454)
201 COG1160 Predicted GTPases [Gen 99.8 5.3E-20 1.1E-24 143.6 13.8 151 8-179 4-165 (444)
202 KOG0074 GTP-binding ADP-ribosy 99.8 4.2E-20 9E-25 121.9 10.7 161 4-178 14-178 (185)
203 TIGR00483 EF-1_alpha translati 99.8 4.5E-20 9.7E-25 148.2 12.8 160 1-169 1-197 (426)
204 COG1160 Predicted GTPases [Gen 99.8 3.4E-19 7.5E-24 139.1 17.1 157 6-178 177-350 (444)
205 cd04168 TetM_like Tet(M)-like 99.8 1.9E-19 4E-24 133.7 12.7 168 9-180 1-236 (237)
206 KOG1423 Ras-like GTPase ERA [C 99.8 1.1E-19 2.4E-24 134.7 11.0 173 5-180 70-272 (379)
207 KOG1707 Predicted Ras related/ 99.8 3.3E-20 7.1E-25 147.5 8.5 170 4-184 6-180 (625)
208 PRK10218 GTP-binding protein; 99.8 6.8E-19 1.5E-23 145.4 16.0 164 6-182 4-198 (607)
209 PF10662 PduV-EutP: Ethanolami 99.8 9.9E-20 2.1E-24 122.9 9.0 136 9-175 3-142 (143)
210 cd01876 YihA_EngB The YihA (En 99.8 4.5E-19 9.8E-24 124.8 12.1 154 9-177 1-169 (170)
211 cd04167 Snu114p Snu114p subfam 99.8 2.4E-19 5.3E-24 131.5 11.0 112 9-124 2-136 (213)
212 PRK10512 selenocysteinyl-tRNA- 99.8 8.7E-19 1.9E-23 145.4 15.5 158 9-180 2-167 (614)
213 TIGR01394 TypA_BipA GTP-bindin 99.8 3.4E-19 7.4E-24 147.2 13.0 160 9-182 3-194 (594)
214 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.1E-19 8.9E-24 129.8 11.5 151 9-170 1-185 (208)
215 PRK04004 translation initiatio 99.8 1E-18 2.2E-23 144.3 15.2 165 6-177 5-216 (586)
216 PRK04000 translation initiatio 99.8 7.7E-19 1.7E-23 140.1 13.6 167 3-180 5-202 (411)
217 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.6E-18 3.5E-23 125.0 13.9 148 7-167 2-171 (195)
218 TIGR03680 eif2g_arch translati 99.8 6.9E-19 1.5E-23 140.4 12.5 165 5-180 2-197 (406)
219 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.7E-18 7.9E-23 125.7 15.0 154 9-176 1-220 (224)
220 cd01883 EF1_alpha Eukaryotic e 99.8 1.3E-18 2.9E-23 128.0 10.3 151 9-168 1-194 (219)
221 PRK12736 elongation factor Tu; 99.8 6.6E-18 1.4E-22 134.3 14.5 163 5-180 10-202 (394)
222 KOG1489 Predicted GTP-binding 99.8 1.6E-17 3.6E-22 123.8 14.4 155 8-177 197-365 (366)
223 TIGR00485 EF-Tu translation el 99.8 1.1E-17 2.5E-22 133.0 13.9 149 4-165 9-179 (394)
224 PRK12735 elongation factor Tu; 99.8 2.1E-17 4.6E-22 131.4 15.1 162 5-179 10-203 (396)
225 COG0370 FeoB Fe2+ transport sy 99.8 2.6E-17 5.6E-22 134.1 15.7 156 7-182 3-167 (653)
226 cd04104 p47_IIGP_like p47 (47- 99.8 2.4E-17 5.1E-22 119.5 12.9 171 7-183 1-188 (197)
227 KOG0077 Vesicle coat complex C 99.8 3.2E-18 7E-23 115.9 7.2 157 6-178 19-192 (193)
228 CHL00071 tufA elongation facto 99.7 5.2E-17 1.1E-21 129.8 14.9 150 4-166 9-180 (409)
229 cd01885 EF2 EF2 (for archaea a 99.7 4E-17 8.6E-22 119.8 12.6 112 9-124 2-138 (222)
230 PRK00741 prfC peptide chain re 99.7 5.9E-17 1.3E-21 132.4 13.8 117 5-125 8-145 (526)
231 cd04169 RF3 RF3 subfamily. Pe 99.7 4.7E-17 1E-21 122.8 12.3 114 9-126 4-138 (267)
232 cd04170 EF-G_bact Elongation f 99.7 1.2E-16 2.6E-21 121.2 14.4 112 9-126 1-131 (268)
233 cd01850 CDC_Septin CDC/Septin. 99.7 5.2E-16 1.1E-20 117.7 16.1 143 6-162 3-185 (276)
234 PRK13351 elongation factor G; 99.7 6.6E-17 1.4E-21 136.9 12.3 116 4-126 5-140 (687)
235 PRK00049 elongation factor Tu; 99.7 4.5E-16 9.7E-21 123.9 15.2 161 5-178 10-202 (396)
236 COG0218 Predicted GTPase [Gene 99.7 3.2E-16 7E-21 110.6 12.4 156 6-179 23-197 (200)
237 COG2262 HflX GTPases [General 99.7 8.9E-16 1.9E-20 118.5 15.7 158 6-181 191-358 (411)
238 cd01886 EF-G Elongation factor 99.7 1.5E-16 3.2E-21 120.3 11.3 111 9-125 1-130 (270)
239 PRK05124 cysN sulfate adenylyl 99.7 2.7E-16 5.9E-21 127.4 13.5 156 4-170 24-216 (474)
240 COG0532 InfB Translation initi 99.7 6.1E-16 1.3E-20 122.9 14.9 158 6-180 4-171 (509)
241 COG0536 Obg Predicted GTPase [ 99.7 5.4E-16 1.2E-20 117.0 13.5 162 9-182 161-336 (369)
242 PLN03127 Elongation factor Tu; 99.7 9E-16 2E-20 123.4 15.2 162 5-179 59-252 (447)
243 PLN00043 elongation factor 1-a 99.7 3.5E-16 7.5E-21 125.9 12.8 159 3-169 3-203 (447)
244 COG1084 Predicted GTPase [Gene 99.7 5.8E-16 1.3E-20 116.3 12.6 159 7-181 168-338 (346)
245 PTZ00141 elongation factor 1- 99.7 5.2E-16 1.1E-20 124.9 13.1 159 1-169 1-203 (446)
246 COG3596 Predicted GTPase [Gene 99.7 1.1E-16 2.4E-21 117.6 8.0 175 5-183 37-226 (296)
247 PLN03126 Elongation factor Tu; 99.7 8.7E-16 1.9E-20 124.2 13.9 148 5-165 79-248 (478)
248 TIGR02034 CysN sulfate adenyly 99.7 3.7E-16 8.1E-21 124.7 11.4 151 8-169 1-187 (406)
249 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 7.8E-16 1.7E-20 113.1 12.1 166 9-180 1-177 (232)
250 TIGR00503 prfC peptide chain r 99.7 1.4E-15 3E-20 124.4 14.7 117 5-125 9-146 (527)
251 PF09439 SRPRB: Signal recogni 99.7 7.6E-17 1.6E-21 113.6 5.8 113 9-126 5-127 (181)
252 cd01899 Ygr210 Ygr210 subfamil 99.7 4.5E-15 9.7E-20 114.3 15.3 80 10-89 1-110 (318)
253 COG1163 DRG Predicted GTPase [ 99.7 1.3E-14 2.9E-19 108.8 16.8 152 7-178 63-288 (365)
254 PF01926 MMR_HSR1: 50S ribosom 99.7 1.9E-15 4.2E-20 100.4 11.0 105 9-120 1-116 (116)
255 PRK05506 bifunctional sulfate 99.6 1.5E-15 3.2E-20 127.5 11.7 154 5-169 22-211 (632)
256 KOG0462 Elongation factor-type 99.6 4.6E-15 9.9E-20 117.8 13.6 166 5-184 58-240 (650)
257 KOG1191 Mitochondrial GTPase [ 99.6 1.5E-15 3.3E-20 119.2 10.1 166 6-183 267-454 (531)
258 PRK12739 elongation factor G; 99.6 9.1E-15 2E-19 123.8 15.1 117 4-126 5-140 (691)
259 TIGR00484 EF-G translation elo 99.6 9.5E-15 2.1E-19 123.7 14.7 115 5-125 8-141 (689)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1E-13 2.2E-18 100.4 16.5 163 8-180 1-185 (196)
261 PTZ00327 eukaryotic translatio 99.6 1.5E-14 3.2E-19 116.4 12.7 166 5-181 32-235 (460)
262 PRK00007 elongation factor G; 99.6 1.7E-14 3.6E-19 122.2 12.6 115 5-125 8-141 (693)
263 COG5256 TEF1 Translation elong 99.6 1.9E-14 4.1E-19 111.3 11.4 164 1-170 1-202 (428)
264 PRK12740 elongation factor G; 99.6 1.5E-14 3.3E-19 122.4 11.0 108 13-126 1-127 (668)
265 COG0481 LepA Membrane GTPase L 99.6 7E-14 1.5E-18 109.6 13.3 164 5-184 7-191 (603)
266 KOG0090 Signal recognition par 99.6 2.2E-14 4.8E-19 101.5 9.6 165 8-177 39-237 (238)
267 KOG1707 Predicted Ras related/ 99.6 1.3E-13 2.8E-18 110.4 15.0 163 5-182 423-586 (625)
268 PRK09866 hypothetical protein; 99.6 1.3E-13 2.8E-18 112.6 15.0 110 56-177 231-351 (741)
269 KOG1532 GTPase XAB1, interacts 99.6 5E-14 1.1E-18 103.5 11.0 172 5-178 17-263 (366)
270 cd00066 G-alpha G protein alph 99.6 1.2E-13 2.6E-18 106.9 13.6 128 54-181 160-313 (317)
271 KOG1145 Mitochondrial translat 99.6 1.5E-13 3.3E-18 109.3 14.3 154 7-178 153-315 (683)
272 PRK09602 translation-associate 99.6 1.8E-13 3.9E-18 108.5 14.4 82 8-89 2-113 (396)
273 KOG3905 Dynein light intermedi 99.5 1.4E-13 3E-18 103.4 12.6 171 8-184 53-295 (473)
274 COG4917 EutP Ethanolamine util 99.5 1.4E-14 3E-19 94.0 5.7 137 9-176 3-143 (148)
275 PRK14845 translation initiatio 99.5 2.3E-13 5E-18 117.8 13.2 153 19-178 473-672 (1049)
276 TIGR00490 aEF-2 translation el 99.5 2.8E-14 6.2E-19 121.2 7.0 117 5-125 17-152 (720)
277 PRK13768 GTPase; Provisional 99.5 3.4E-13 7.3E-18 101.2 10.1 124 56-179 98-247 (253)
278 KOG1490 GTP-binding protein CR 99.5 5.9E-14 1.3E-18 110.6 5.8 171 8-191 169-353 (620)
279 PF05783 DLIC: Dynein light in 99.5 2.5E-12 5.4E-17 103.5 14.9 173 8-184 26-269 (472)
280 PF03029 ATP_bind_1: Conserved 99.5 1.8E-14 3.8E-19 106.9 2.0 122 56-178 92-236 (238)
281 TIGR00101 ureG urease accessor 99.5 1.8E-12 3.9E-17 93.9 12.2 102 55-179 92-196 (199)
282 TIGR00157 ribosome small subun 99.5 7.6E-13 1.7E-17 98.8 10.4 96 66-176 24-120 (245)
283 smart00275 G_alpha G protein a 99.4 1.5E-12 3.2E-17 101.7 11.8 127 55-181 184-336 (342)
284 cd01853 Toc34_like Toc34-like 99.4 3.2E-12 6.9E-17 95.5 12.3 119 5-127 29-165 (249)
285 TIGR00991 3a0901s02IAP34 GTP-b 99.4 4.1E-12 8.8E-17 96.6 12.8 117 6-125 37-167 (313)
286 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.6E-11 3.5E-16 90.7 14.6 169 6-193 38-211 (225)
287 KOG0461 Selenocysteine-specifi 99.4 9E-12 2E-16 94.5 12.5 174 1-185 1-199 (522)
288 PLN00116 translation elongatio 99.4 8.1E-13 1.8E-17 114.0 7.9 118 3-124 15-163 (843)
289 smart00010 small_GTPase Small 99.4 7.5E-12 1.6E-16 83.7 10.8 113 8-168 1-115 (124)
290 PTZ00416 elongation factor 2; 99.4 1E-12 2.2E-17 113.2 8.0 117 4-124 16-157 (836)
291 PTZ00258 GTP-binding protein; 99.4 2.2E-11 4.8E-16 95.9 14.7 85 5-89 19-126 (390)
292 PRK07560 elongation factor EF- 99.4 7.9E-12 1.7E-16 106.7 13.1 117 5-125 18-153 (731)
293 KOG1144 Translation initiation 99.4 2.2E-12 4.8E-17 105.9 8.7 181 9-196 477-704 (1064)
294 COG2895 CysN GTPases - Sulfate 99.4 1.1E-11 2.3E-16 94.3 11.7 156 4-168 3-192 (431)
295 COG4108 PrfC Peptide chain rel 99.4 7.9E-12 1.7E-16 97.4 11.2 115 8-126 13-148 (528)
296 PRK09435 membrane ATPase/prote 99.4 1.3E-11 2.8E-16 95.5 12.0 106 55-179 149-260 (332)
297 TIGR02836 spore_IV_A stage IV 99.4 3E-11 6.5E-16 94.5 13.5 157 5-176 15-234 (492)
298 COG1217 TypA Predicted membran 99.3 3.2E-11 6.9E-16 94.8 12.8 163 8-183 6-199 (603)
299 TIGR00073 hypB hydrogenase acc 99.3 5.3E-11 1.1E-15 87.0 12.3 151 6-177 21-205 (207)
300 KOG0458 Elongation factor 1 al 99.3 5.2E-11 1.1E-15 95.7 12.6 154 6-170 176-373 (603)
301 PF04548 AIG1: AIG1 family; I 99.3 1.4E-10 2.9E-15 85.1 13.5 162 8-181 1-188 (212)
302 PRK09601 GTP-binding protein Y 99.3 2.2E-10 4.7E-15 89.3 14.8 82 8-89 3-107 (364)
303 PF00735 Septin: Septin; Inte 99.3 2.7E-10 5.9E-15 86.6 14.3 115 7-126 4-157 (281)
304 PF05049 IIGP: Interferon-indu 99.3 3E-11 6.4E-16 94.2 9.1 168 6-182 34-221 (376)
305 COG0480 FusA Translation elong 99.2 6.2E-11 1.3E-15 99.4 8.9 118 4-126 7-143 (697)
306 PF00350 Dynamin_N: Dynamin fa 99.2 7.6E-11 1.7E-15 83.2 7.9 62 57-121 103-168 (168)
307 KOG0468 U5 snRNP-specific prot 99.2 5.4E-11 1.2E-15 96.9 7.6 118 3-124 124-262 (971)
308 KOG0705 GTPase-activating prot 99.2 6E-11 1.3E-15 94.8 7.6 161 6-181 29-191 (749)
309 KOG0082 G-protein alpha subuni 99.2 6.5E-10 1.4E-14 85.8 13.1 127 55-181 195-346 (354)
310 KOG1486 GTP-binding protein DR 99.2 2.9E-09 6.3E-14 77.9 15.3 152 7-178 62-287 (364)
311 COG0012 Predicted GTPase, prob 99.1 3.7E-09 8E-14 81.7 15.1 83 8-90 3-109 (372)
312 TIGR00750 lao LAO/AO transport 99.1 1.1E-09 2.5E-14 84.3 12.0 107 54-178 126-237 (300)
313 KOG3886 GTP-binding protein [S 99.1 1.2E-10 2.5E-15 83.9 4.6 117 8-126 5-131 (295)
314 COG5257 GCD11 Translation init 99.1 1.1E-09 2.5E-14 82.5 9.8 166 6-185 9-208 (415)
315 COG3276 SelB Selenocysteine-sp 99.1 7.4E-10 1.6E-14 86.7 8.5 154 9-179 2-162 (447)
316 COG0378 HypB Ni2+-binding GTPa 99.0 5.3E-09 1.2E-13 73.8 11.3 79 80-178 119-200 (202)
317 PRK00098 GTPase RsgA; Reviewed 99.0 2.4E-09 5.2E-14 82.4 9.4 87 75-175 77-163 (298)
318 cd01855 YqeH YqeH. YqeH is an 99.0 1.2E-09 2.5E-14 78.8 7.1 95 68-179 24-125 (190)
319 COG0050 TufB GTPases - transla 99.0 1.4E-09 3.1E-14 81.1 7.6 169 6-185 11-207 (394)
320 KOG2486 Predicted GTPase [Gene 99.0 6.3E-10 1.4E-14 82.3 5.6 165 5-177 134-314 (320)
321 smart00053 DYNc Dynamin, GTPas 99.0 3.9E-09 8.5E-14 78.3 9.1 69 55-126 125-207 (240)
322 cd01859 MJ1464 MJ1464. This f 99.0 1.3E-09 2.9E-14 76.0 6.3 93 70-179 4-96 (156)
323 cd01900 YchF YchF subfamily. 99.0 1.5E-09 3.2E-14 82.0 6.5 80 10-89 1-103 (274)
324 TIGR00993 3a0901s04IAP86 chlor 99.0 2.1E-08 4.6E-13 83.0 13.5 116 7-126 118-251 (763)
325 PRK10463 hydrogenase nickel in 99.0 4.6E-09 9.9E-14 79.5 9.0 56 112-177 231-287 (290)
326 KOG3887 Predicted small GTPase 98.9 3.1E-09 6.7E-14 77.3 6.9 167 9-181 29-204 (347)
327 COG1703 ArgK Putative periplas 98.9 5.3E-09 1.1E-13 78.4 8.1 106 55-179 144-254 (323)
328 KOG1143 Predicted translation 98.9 9.4E-09 2E-13 79.2 9.5 161 7-171 167-380 (591)
329 PRK12289 GTPase RsgA; Reviewed 98.9 1.1E-08 2.4E-13 80.1 10.1 91 70-176 81-172 (352)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.9 8.2E-09 1.8E-13 79.0 8.9 88 73-176 73-161 (287)
331 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4.5E-09 9.8E-14 72.1 6.4 54 9-65 85-138 (141)
332 PF03308 ArgK: ArgK protein; 98.9 4.9E-09 1.1E-13 77.5 6.9 100 55-178 122-229 (266)
333 KOG2655 Septin family protein 98.9 6.4E-08 1.4E-12 75.0 12.9 116 7-127 21-174 (366)
334 COG5019 CDC3 Septin family pro 98.9 3.5E-08 7.5E-13 76.0 11.0 119 5-127 21-178 (373)
335 PRK12288 GTPase RsgA; Reviewed 98.8 3.8E-08 8.2E-13 77.1 10.2 89 76-177 118-206 (347)
336 TIGR03597 GTPase_YqeH ribosome 98.8 1.2E-08 2.5E-13 80.6 6.9 96 65-177 50-151 (360)
337 KOG0410 Predicted GTP binding 98.8 6.4E-09 1.4E-13 78.6 4.9 149 9-181 180-343 (410)
338 cd04178 Nucleostemin_like Nucl 98.8 2.5E-08 5.5E-13 70.6 6.7 53 7-64 117-171 (172)
339 cd01858 NGP_1 NGP-1. Autoanti 98.8 5E-08 1.1E-12 68.1 8.2 90 75-178 5-94 (157)
340 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.2E-08 6.9E-13 69.1 7.0 54 6-64 101-156 (157)
341 COG5258 GTPBP1 GTPase [General 98.8 2.5E-08 5.4E-13 77.2 6.5 171 6-181 116-340 (527)
342 KOG1954 Endocytosis/signaling 98.7 4.5E-08 9.7E-13 75.4 7.5 116 10-128 61-228 (532)
343 cd01856 YlqF YlqF. Proteins o 98.7 4.4E-08 9.5E-13 69.4 6.9 56 6-65 114-170 (171)
344 TIGR03596 GTPase_YlqF ribosome 98.7 8.5E-08 1.8E-12 73.1 7.4 55 6-65 117-173 (276)
345 cd01849 YlqF_related_GTPase Yl 98.6 3E-07 6.4E-12 64.1 9.0 83 80-178 1-84 (155)
346 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.5E-07 3.3E-12 72.1 7.8 57 6-66 120-177 (287)
347 KOG1547 Septin CDC10 and relat 98.6 3.7E-07 8E-12 66.6 9.0 119 2-124 41-197 (336)
348 cd01859 MJ1464 MJ1464. This f 98.6 1.7E-07 3.7E-12 65.3 7.1 55 6-64 100-155 (156)
349 TIGR00092 GTP-binding protein 98.6 2.3E-07 4.9E-12 72.7 8.0 82 8-89 3-108 (368)
350 COG1618 Predicted nucleotide k 98.6 5.6E-06 1.2E-10 57.0 13.5 144 7-178 5-175 (179)
351 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.6E-07 5.7E-12 63.3 6.6 77 75-166 8-84 (141)
352 PF03193 DUF258: Protein of un 98.5 6.3E-08 1.4E-12 67.2 3.4 58 9-69 37-101 (161)
353 cd01855 YqeH YqeH. YqeH is an 98.5 1.9E-07 4.2E-12 67.2 6.1 52 8-64 128-189 (190)
354 KOG0465 Mitochondrial elongati 98.5 1.5E-07 3.3E-12 76.6 5.9 117 6-126 38-171 (721)
355 COG5192 BMS1 GTP-binding prote 98.5 7.8E-07 1.7E-11 72.3 9.2 142 6-163 68-210 (1077)
356 PRK12288 GTPase RsgA; Reviewed 98.5 1.9E-07 4.1E-12 73.2 5.3 57 10-69 208-271 (347)
357 cd01849 YlqF_related_GTPase Yl 98.5 4.4E-07 9.5E-12 63.2 6.6 54 6-64 99-154 (155)
358 KOG0460 Mitochondrial translat 98.5 7.1E-07 1.5E-11 68.2 8.0 167 7-183 54-249 (449)
359 COG1161 Predicted GTPases [Gen 98.5 3.3E-07 7.1E-12 71.3 6.5 57 6-66 131-188 (322)
360 TIGR03596 GTPase_YlqF ribosome 98.5 3E-07 6.5E-12 70.1 6.2 100 62-180 4-104 (276)
361 KOG1491 Predicted GTP-binding 98.5 8.8E-07 1.9E-11 67.7 8.4 85 6-90 19-126 (391)
362 KOG0467 Translation elongation 98.5 6.2E-07 1.3E-11 74.8 7.3 114 5-122 7-135 (887)
363 PF09547 Spore_IV_A: Stage IV 98.4 1.3E-05 2.9E-10 63.3 14.2 155 6-175 16-233 (492)
364 cd01856 YlqF YlqF. Proteins o 98.4 1.2E-06 2.7E-11 62.0 7.5 88 72-178 13-100 (171)
365 KOG1487 GTP-binding protein DR 98.4 4.6E-06 1E-10 61.7 10.3 86 8-95 60-153 (358)
366 PF00503 G-alpha: G-protein al 98.4 4.3E-06 9.3E-11 66.9 11.2 124 55-178 236-389 (389)
367 KOG0464 Elongation factor G [T 98.4 7.9E-08 1.7E-12 75.2 0.3 117 6-126 36-169 (753)
368 KOG0448 Mitofusin 1 GTPase, in 98.4 7.9E-06 1.7E-10 67.7 11.4 116 7-126 109-276 (749)
369 PRK13796 GTPase YqeH; Provisio 98.3 3.5E-06 7.7E-11 66.7 9.1 84 77-177 67-157 (365)
370 cd01851 GBP Guanylate-binding 98.3 3.7E-06 8E-11 62.2 8.5 88 5-92 5-105 (224)
371 PRK12289 GTPase RsgA; Reviewed 98.3 7.4E-07 1.6E-11 69.9 4.7 56 10-68 175-237 (352)
372 KOG4273 Uncharacterized conser 98.3 2.6E-05 5.6E-10 57.5 12.3 166 9-179 6-222 (418)
373 TIGR00157 ribosome small subun 98.3 8E-07 1.7E-11 66.6 4.5 22 9-30 122-143 (245)
374 KOG0463 GTP-binding protein GP 98.3 7.9E-06 1.7E-10 63.5 9.7 69 55-127 219-289 (641)
375 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1E-06 2.2E-11 67.6 4.8 59 8-69 162-227 (287)
376 PRK09563 rbgA GTPase YlqF; Rev 98.3 7E-06 1.5E-10 63.0 8.6 99 62-179 7-106 (287)
377 TIGR03348 VI_IcmF type VI secr 98.2 5.8E-06 1.3E-10 74.5 9.2 110 10-124 114-256 (1169)
378 COG1162 Predicted GTPases [Gen 98.2 2.5E-06 5.5E-11 64.7 5.9 57 9-69 166-230 (301)
379 PRK01889 GTPase RsgA; Reviewed 98.2 1.2E-05 2.5E-10 63.6 9.7 84 76-175 110-193 (356)
380 PRK10416 signal recognition pa 98.2 1.2E-05 2.6E-10 62.5 9.4 95 54-171 196-302 (318)
381 TIGR03597 GTPase_YqeH ribosome 98.2 3.1E-06 6.7E-11 66.9 5.4 55 8-67 155-216 (360)
382 PRK00098 GTPase RsgA; Reviewed 98.2 2.9E-06 6.4E-11 65.4 5.0 23 9-31 166-188 (298)
383 PRK14974 cell division protein 98.2 6.5E-06 1.4E-10 64.2 6.7 94 55-171 223-322 (336)
384 PRK13796 GTPase YqeH; Provisio 98.2 4.8E-06 1E-10 66.0 6.0 54 8-66 161-221 (365)
385 TIGR00064 ftsY signal recognit 98.1 9E-06 1.9E-10 61.8 7.1 95 54-171 154-260 (272)
386 KOG0447 Dynamin-like GTP bindi 98.1 6.3E-05 1.4E-09 61.3 11.8 81 56-149 413-507 (980)
387 KOG0085 G protein subunit Galp 98.1 5.4E-06 1.2E-10 60.4 5.0 127 54-180 198-350 (359)
388 KOG0466 Translation initiation 98.1 4.4E-06 9.5E-11 63.2 4.6 166 3-183 34-245 (466)
389 cd03112 CobW_like The function 98.1 1.7E-05 3.8E-10 55.4 6.8 21 10-30 3-23 (158)
390 TIGR01425 SRP54_euk signal rec 98.1 2.2E-05 4.9E-10 63.0 8.1 66 54-125 182-253 (429)
391 PRK13695 putative NTPase; Prov 98.1 0.0001 2.2E-09 52.3 10.7 22 8-29 1-22 (174)
392 KOG0469 Elongation factor 2 [T 98.0 9.5E-06 2.1E-10 65.3 4.3 120 1-124 13-163 (842)
393 PF06858 NOG1: Nucleolar GTP-b 97.9 5.7E-05 1.2E-09 42.7 5.7 45 77-122 12-58 (58)
394 KOG1424 Predicted GTP-binding 97.9 1.8E-05 3.9E-10 63.7 4.5 55 7-65 314-369 (562)
395 COG3523 IcmF Type VI protein s 97.9 3.7E-05 8E-10 68.3 6.6 112 10-125 128-270 (1188)
396 PRK00771 signal recognition pa 97.8 7E-05 1.5E-09 60.6 7.4 64 55-125 176-246 (437)
397 COG1162 Predicted GTPases [Gen 97.8 0.00031 6.7E-09 53.6 10.3 95 70-177 71-165 (301)
398 KOG1533 Predicted GTPase [Gene 97.8 3.3E-05 7.1E-10 56.4 4.1 117 55-174 97-248 (290)
399 cd02038 FleN-like FleN is a me 97.8 0.00016 3.4E-09 49.4 7.0 107 11-124 4-110 (139)
400 PRK14722 flhF flagellar biosyn 97.7 0.00022 4.7E-09 56.5 8.6 22 8-29 138-159 (374)
401 PF13207 AAA_17: AAA domain; P 97.7 3.2E-05 7E-10 51.3 2.9 22 9-30 1-22 (121)
402 PRK08118 topology modulation p 97.7 3.8E-05 8.1E-10 54.2 3.2 22 9-30 3-24 (167)
403 KOG3859 Septins (P-loop GTPase 97.7 0.00017 3.6E-09 54.2 6.6 59 6-64 41-104 (406)
404 PRK14738 gmk guanylate kinase; 97.7 7.5E-05 1.6E-09 54.5 4.5 25 6-30 12-36 (206)
405 KOG1534 Putative transcription 97.6 5.7E-05 1.2E-09 54.3 3.6 69 111-179 164-251 (273)
406 COG0563 Adk Adenylate kinase a 97.6 4.9E-05 1.1E-09 54.1 3.1 22 9-30 2-23 (178)
407 KOG2484 GTPase [General functi 97.6 6.4E-05 1.4E-09 58.8 3.9 56 6-65 251-307 (435)
408 PRK07261 topology modulation p 97.6 5.1E-05 1.1E-09 53.7 3.2 22 9-30 2-23 (171)
409 PRK05480 uridine/cytidine kina 97.6 7E-05 1.5E-09 54.7 3.9 29 1-30 1-29 (209)
410 TIGR03574 selen_PSTK L-seryl-t 97.6 0.00015 3.4E-09 54.4 5.8 93 82-180 69-169 (249)
411 KOG0459 Polypeptide release fa 97.6 0.00022 4.7E-09 56.1 6.2 164 5-172 77-279 (501)
412 PRK12727 flagellar biosynthesi 97.6 0.00054 1.2E-08 56.4 8.7 22 8-29 351-372 (559)
413 PRK10867 signal recognition pa 97.6 0.00073 1.6E-08 54.7 9.3 83 55-159 184-273 (433)
414 PF03266 NTPase_1: NTPase; In 97.6 0.00015 3.2E-09 51.2 4.8 52 9-62 1-52 (168)
415 PF13671 AAA_33: AAA domain; P 97.6 6.2E-05 1.4E-09 51.4 2.8 21 10-30 2-22 (143)
416 cd00009 AAA The AAA+ (ATPases 97.5 0.00039 8.5E-09 47.0 6.6 24 8-31 20-43 (151)
417 KOG2485 Conserved ATP/GTP bind 97.5 0.00019 4.1E-09 54.7 5.2 59 6-65 142-206 (335)
418 PRK10751 molybdopterin-guanine 97.5 0.00011 2.4E-09 51.9 3.7 29 2-30 1-29 (173)
419 COG1419 FlhF Flagellar GTP-bin 97.5 0.00094 2E-08 53.0 9.1 20 9-28 205-224 (407)
420 TIGR00235 udk uridine kinase. 97.5 0.00012 2.7E-09 53.4 4.0 28 2-29 1-28 (207)
421 PRK14530 adenylate kinase; Pro 97.5 0.0001 2.2E-09 54.1 3.6 21 9-29 5-25 (215)
422 TIGR00959 ffh signal recogniti 97.5 0.00034 7.3E-09 56.5 6.6 83 55-159 183-272 (428)
423 COG1126 GlnQ ABC-type polar am 97.5 0.0001 2.2E-09 53.4 3.2 23 158-180 163-185 (240)
424 PF13555 AAA_29: P-loop contai 97.5 0.00013 2.9E-09 42.2 3.0 21 9-29 25-45 (62)
425 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00086 1.9E-08 42.1 7.2 71 10-93 2-73 (99)
426 PF13521 AAA_28: AAA domain; P 97.5 8E-05 1.7E-09 52.2 2.3 22 9-30 1-22 (163)
427 PRK14737 gmk guanylate kinase; 97.5 0.00015 3.4E-09 52.0 3.8 23 8-30 5-27 (186)
428 cd02019 NK Nucleoside/nucleoti 97.4 0.00015 3.1E-09 43.3 3.0 21 10-30 2-22 (69)
429 PTZ00088 adenylate kinase 1; P 97.4 0.00015 3.2E-09 53.8 3.6 27 3-29 2-28 (229)
430 cd04178 Nucleostemin_like Nucl 97.4 0.00084 1.8E-08 47.6 6.9 44 80-125 1-44 (172)
431 PRK00300 gmk guanylate kinase; 97.4 0.00023 5E-09 51.8 3.9 28 1-30 1-28 (205)
432 COG3640 CooC CO dehydrogenase 97.4 0.0019 4.2E-08 47.5 8.4 49 73-124 150-198 (255)
433 COG1136 SalX ABC-type antimicr 97.4 0.00016 3.5E-09 53.1 3.0 22 9-30 33-54 (226)
434 PRK06217 hypothetical protein; 97.3 0.0002 4.3E-09 51.2 3.2 23 8-30 2-24 (183)
435 PF04665 Pox_A32: Poxvirus A32 97.3 0.00023 4.9E-09 52.9 3.2 25 6-30 12-36 (241)
436 PRK01889 GTPase RsgA; Reviewed 97.3 0.00025 5.4E-09 56.1 3.6 22 9-30 197-218 (356)
437 PF00005 ABC_tran: ABC transpo 97.3 0.00022 4.9E-09 48.3 3.0 23 9-31 13-35 (137)
438 KOG3929 Uncharacterized conser 97.3 2.6E-05 5.6E-10 57.7 -1.8 147 6-162 44-235 (363)
439 COG0194 Gmk Guanylate kinase [ 97.3 0.00017 3.6E-09 51.1 2.3 24 8-31 5-28 (191)
440 PRK03839 putative kinase; Prov 97.3 0.00025 5.5E-09 50.5 3.2 22 9-30 2-23 (180)
441 PF00004 AAA: ATPase family as 97.3 0.00026 5.7E-09 47.4 3.1 21 10-30 1-21 (132)
442 cd02042 ParA ParA and ParB of 97.3 0.0012 2.6E-08 42.5 6.0 82 10-103 2-84 (104)
443 cd00071 GMPK Guanosine monopho 97.2 0.00028 6.1E-09 48.0 3.0 21 10-30 2-22 (137)
444 PRK10078 ribose 1,5-bisphospho 97.2 0.0003 6.4E-09 50.5 3.3 22 9-30 4-25 (186)
445 COG1116 TauB ABC-type nitrate/ 97.2 0.00026 5.7E-09 52.4 3.0 20 10-29 32-51 (248)
446 TIGR02322 phosphon_PhnN phosph 97.2 0.00027 5.8E-09 50.3 3.0 22 9-30 3-24 (179)
447 PRK05057 aroK shikimate kinase 97.2 0.00037 8.1E-09 49.4 3.7 22 9-30 6-27 (172)
448 PF11111 CENP-M: Centromere pr 97.2 0.035 7.6E-07 39.0 14.0 141 4-178 12-152 (176)
449 smart00382 AAA ATPases associa 97.2 0.00033 7.2E-09 47.0 3.2 24 9-32 4-27 (148)
450 PRK08233 hypothetical protein; 97.2 0.00036 7.9E-09 49.6 3.6 24 7-30 3-26 (182)
451 PF03205 MobB: Molybdopterin g 97.2 0.0003 6.5E-09 48.1 2.9 22 9-30 2-23 (140)
452 PRK11537 putative GTP-binding 97.2 0.0038 8.2E-08 48.7 9.3 21 10-30 7-27 (318)
453 PRK14723 flhF flagellar biosyn 97.2 0.0027 5.7E-08 54.7 9.0 21 9-29 187-207 (767)
454 PF13238 AAA_18: AAA domain; P 97.2 0.00029 6.2E-09 47.0 2.7 21 10-30 1-21 (129)
455 PRK13949 shikimate kinase; Pro 97.2 0.00036 7.9E-09 49.3 3.2 21 9-29 3-23 (169)
456 COG3638 ABC-type phosphate/pho 97.2 0.00034 7.3E-09 51.4 2.9 21 9-29 32-52 (258)
457 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00037 8E-09 45.1 2.8 20 9-28 17-36 (107)
458 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00035 7.5E-09 50.0 3.0 21 9-29 5-25 (188)
459 PRK14532 adenylate kinase; Pro 97.1 0.00038 8.2E-09 50.0 3.0 21 9-29 2-22 (188)
460 PHA00729 NTP-binding motif con 97.1 0.00046 1E-08 50.8 3.4 27 4-30 14-40 (226)
461 cd02023 UMPK Uridine monophosp 97.1 0.00038 8.1E-09 50.4 3.0 21 10-30 2-22 (198)
462 TIGR03263 guanyl_kin guanylate 97.1 0.00043 9.3E-09 49.3 3.1 22 9-30 3-24 (180)
463 PRK14531 adenylate kinase; Pro 97.1 0.00052 1.1E-08 49.1 3.2 22 8-29 3-24 (183)
464 cd01428 ADK Adenylate kinase ( 97.1 0.0004 8.7E-09 49.9 2.7 22 9-30 1-22 (194)
465 PRK00625 shikimate kinase; Pro 97.1 0.00049 1.1E-08 48.8 3.0 21 9-29 2-22 (173)
466 PRK05541 adenylylsulfate kinas 97.1 0.00066 1.4E-08 48.2 3.6 27 4-30 4-30 (176)
467 cd03238 ABC_UvrA The excision 97.1 0.00057 1.2E-08 48.6 3.3 20 9-28 23-42 (176)
468 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00049 1.1E-08 49.1 2.9 20 10-29 2-21 (183)
469 PLN02200 adenylate kinase fami 97.1 0.00069 1.5E-08 50.5 3.8 24 6-29 42-65 (234)
470 PRK02496 adk adenylate kinase; 97.1 0.0006 1.3E-08 48.8 3.3 22 8-29 2-23 (184)
471 PRK06547 hypothetical protein; 97.1 0.00069 1.5E-08 48.0 3.5 27 4-30 12-38 (172)
472 PF07728 AAA_5: AAA domain (dy 97.0 0.00053 1.2E-08 46.6 2.9 22 9-30 1-22 (139)
473 COG3840 ThiQ ABC-type thiamine 97.0 0.0006 1.3E-08 48.3 3.0 22 9-30 27-48 (231)
474 TIGR01351 adk adenylate kinase 97.0 0.00049 1.1E-08 50.4 2.6 21 9-29 1-21 (210)
475 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00063 1.4E-08 48.4 3.1 23 9-31 27-49 (177)
476 cd01130 VirB11-like_ATPase Typ 97.0 0.00068 1.5E-08 48.7 3.3 23 8-30 26-48 (186)
477 cd03110 Fer4_NifH_child This p 97.0 0.0045 9.8E-08 44.0 7.5 85 53-157 91-175 (179)
478 cd02025 PanK Pantothenate kina 97.0 0.00058 1.3E-08 50.4 2.8 21 10-30 2-22 (220)
479 COG0572 Udk Uridine kinase [Nu 97.0 0.0011 2.3E-08 48.5 4.1 30 1-30 1-31 (218)
480 COG1936 Predicted nucleotide k 97.0 0.00067 1.5E-08 47.4 2.9 21 9-29 2-22 (180)
481 PF13191 AAA_16: AAA ATPase do 97.0 0.0006 1.3E-08 48.5 2.7 23 7-29 24-46 (185)
482 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00076 1.6E-08 49.6 3.3 22 9-30 32-53 (218)
483 PRK09270 nucleoside triphospha 97.0 0.00093 2E-08 49.6 3.7 26 5-30 31-56 (229)
484 PRK14527 adenylate kinase; Pro 97.0 0.00091 2E-08 48.2 3.6 23 7-29 6-28 (191)
485 TIGR00960 3a0501s02 Type II (G 96.9 0.00083 1.8E-08 49.3 3.3 22 9-30 31-52 (216)
486 TIGR01166 cbiO cobalt transpor 96.9 0.00077 1.7E-08 48.5 3.0 22 9-30 20-41 (190)
487 PF13401 AAA_22: AAA domain; P 96.9 0.00067 1.5E-08 45.4 2.6 22 9-30 6-27 (131)
488 cd03225 ABC_cobalt_CbiO_domain 96.9 0.00084 1.8E-08 49.1 3.3 22 9-30 29-50 (211)
489 COG3839 MalK ABC-type sugar tr 96.9 0.00072 1.6E-08 52.7 3.0 20 10-29 32-51 (338)
490 PRK04195 replication factor C 96.9 0.007 1.5E-07 50.0 9.0 23 8-30 40-62 (482)
491 COG1120 FepC ABC-type cobalami 96.9 0.00076 1.6E-08 50.6 3.0 21 9-29 30-50 (258)
492 cd01131 PilT Pilus retraction 96.9 0.00077 1.7E-08 48.9 3.0 22 10-31 4-25 (198)
493 cd03264 ABC_drug_resistance_li 96.9 0.00078 1.7E-08 49.3 3.0 22 9-30 27-48 (211)
494 TIGR01313 therm_gnt_kin carboh 96.9 0.00064 1.4E-08 47.6 2.4 21 10-30 1-21 (163)
495 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00089 1.9E-08 48.7 3.3 22 9-30 28-49 (205)
496 COG1117 PstB ABC-type phosphat 96.9 0.00079 1.7E-08 48.9 2.8 20 9-28 35-54 (253)
497 cd03261 ABC_Org_Solvent_Resist 96.9 0.00089 1.9E-08 49.8 3.3 22 9-30 28-49 (235)
498 KOG3347 Predicted nucleotide k 96.9 0.00066 1.4E-08 46.3 2.3 24 6-29 6-29 (176)
499 TIGR03608 L_ocin_972_ABC putat 96.9 0.00096 2.1E-08 48.6 3.3 23 9-31 26-48 (206)
500 PRK04040 adenylate kinase; Pro 96.9 0.00095 2.1E-08 48.0 3.2 23 8-30 3-25 (188)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-43 Score=241.48 Aligned_cols=166 Identities=35% Similarity=0.686 Sum_probs=155.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++.|||+|+|++|||||+|+.||.++.|++.+..|+ .+...+.+.++++.+.+|+|||+||++|+.+..+++++||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 568999999999999999999999999999999999 4666788999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||+++++||..+ ..|+..+.++. +++|.++||||+|+.+.+. ++.++++.|+.+++.++++++||+
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK 155 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence 99999999999999 99999999988 6789999999999988776 999999999999999559999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
++.+++++|..+...+...
T Consensus 156 ~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred CccCHHHHHHHHHHHHHHh
Confidence 9999999999999877543
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-41 Score=233.34 Aligned_cols=168 Identities=32% Similarity=0.622 Sum_probs=154.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+|++++|+.+||||||+.||..+.|.+...+|+ ..++...+.+++..+.|.+|||+|+++|+++.++++++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 346999999999999999999999999988778888 5777889999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||+++.+||..+ +.|+..+.+.. +++-+.+||||+|+.+.+. +..+++..+++..+. .|+++||+
T Consensus 83 vvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSAK 150 (200)
T KOG0092|consen 83 VVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSAK 150 (200)
T ss_pred EEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEecc
Confidence 99999999999999 99999999887 4666778999999988665 999999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCc
Q 029177 163 TQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
++.|++++|..|.+.+......
T Consensus 151 Tg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 151 TGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred cccCHHHHHHHHHHhccCcccc
Confidence 9999999999999998766544
No 3
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.4e-40 Score=238.17 Aligned_cols=188 Identities=55% Similarity=0.986 Sum_probs=158.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
..+||+++|++|||||||+.+|..+.|...+.+|..+.+...+.+++..+.+++|||+|+++|+.+++.+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 34899999999999999999999999999999998777776777899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||+++++||+.+...|...+....+++|+++||||+|+.+.... .......+.+..+++.++++..+..+++++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 99999999999955788877776678999999999999754321 0111122347788999999999966899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177 164 QQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIFL 197 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~ 197 (197)
|+|++++|.++++.+..+.. .+ ++++|.+|
T Consensus 162 g~~v~e~f~~l~~~~~~~~~-~~---~~~~c~~~ 191 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNPTP-IK---DTKSCVLL 191 (191)
T ss_pred CCCHHHHHHHHHHHHhcccc-cc---CCCCceeC
Confidence 99999999999998877542 22 22248775
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.8e-39 Score=229.18 Aligned_cols=174 Identities=89% Similarity=1.379 Sum_probs=153.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|+|||||+.+|..+.|..++.+|....+...+.+++..+.+++|||+|+++|+.++..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999899999877777777889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 167 (197)
+++++||+.+...|+..+....+++|+++||||+|+.+.+.....++..+.+..+++.++++..+..++++|||++|+|+
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 99999999985689998887777899999999999976432112233445688999999999999767999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 029177 168 KTVFDAAIKVVLQP 181 (197)
Q Consensus 168 ~~~~~~i~~~~~~~ 181 (197)
+++|+.+++.++.+
T Consensus 162 ~~~F~~~~~~~~~~ 175 (176)
T cd04133 162 KAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987543
No 5
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.7e-39 Score=237.37 Aligned_cols=176 Identities=38% Similarity=0.690 Sum_probs=153.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
..+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+++|||+|++.|..+++.+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 56899999999999999999999999999999998777777788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||+++++||+.+...|+..+....++.|+++||||+|+.+..... ......+.++.+++.+++++++..+|++|||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999985478999998877889999999999986432110 011123468899999999999986799999999
Q ss_pred CC-CHHHHHHHHHHHHcCC
Q 029177 164 QQ-NVKTVFDAAIKVVLQP 181 (197)
Q Consensus 164 ~~-~i~~~~~~i~~~~~~~ 181 (197)
|+ |++++|..++..+++.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 98 8999999999887654
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.9e-39 Score=231.50 Aligned_cols=167 Identities=29% Similarity=0.487 Sum_probs=149.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||+.+|..+.+...+.++.. +.....+.+++..+.+++||++|+++|..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999988877777764 444566778898999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
+|||++++++|+.+ ..|++.+....++.|++|||||+|+.+.+. ++.++++++++..+. +++++||++
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~ 151 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence 99999999999999 889999988778999999999999976544 888999999999987 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCC
Q 029177 164 QQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~~~ 183 (197)
|.|++++|+++++.+.....
T Consensus 152 g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 152 NFNITESFTELARIVLMRHG 171 (189)
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 99999999999987764433
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.5e-39 Score=230.09 Aligned_cols=177 Identities=38% Similarity=0.726 Sum_probs=154.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.+..+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+++|||+|++.|..+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45578999999999999999999999999999999987777778888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||+++++||+.+...|...+....++.|+++||||+|+.+..... ......+.++.+++.++++++++.+|++|||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997678999998887889999999999996531100 0011234589999999999999768999999
Q ss_pred cCCCC-HHHHHHHHHHHHcC
Q 029177 162 KTQQN-VKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~~-i~~~~~~i~~~~~~ 180 (197)
++|+| ++++|..+++.+++
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999997654
No 8
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-39 Score=227.33 Aligned_cols=167 Identities=34% Similarity=0.641 Sum_probs=155.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
-++.+||+++|++|||||+|+.+|..+.|...+..|. .++...++.+++..+.+|+|||+||++|+.+...++++|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 3578999999999999999999999999999999998 466788899999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||+++..||+.+ ..|+..+.++.+ ++|+++||||+|+...+. ++.+.++.+|.++|. +|+|+||
T Consensus 89 ~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtSA 156 (207)
T KOG0078|consen 89 LLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETSA 156 (207)
T ss_pred EEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEccc
Confidence 999999999999999 679999999984 899999999999988655 999999999999997 9999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~ 182 (197)
++|.||+++|..+.+.+..+.
T Consensus 157 k~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 157 KTNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred cCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999887443
No 9
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-39 Score=222.10 Aligned_cols=165 Identities=34% Similarity=0.575 Sum_probs=153.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.+.+|++++|+.+|||||||+||..+.|...|.+|+ .++.+.++.+.+.++.+|+|||+||++|+.+.+.++++++++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 356999999999999999999999999999999999 5777899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-P-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||+++..||+.. .+|++.+.... + ++-+++||||.||.+.++ ++.+++...+++++. .|+++||
T Consensus 100 iVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsa 167 (221)
T KOG0094|consen 100 IVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSA 167 (221)
T ss_pred EEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEecc
Confidence 99999999999999 89999998776 3 467789999999998876 999999999999998 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~ 181 (197)
+.|+|++++|..|..++..+
T Consensus 168 k~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 168 KAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cCCCCHHHHHHHHHHhccCc
Confidence 99999999999998887655
No 10
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.1e-38 Score=227.04 Aligned_cols=186 Identities=41% Similarity=0.707 Sum_probs=157.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||++|++.|...+..+++++|++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 89999999999999999999999988888888777766777888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177 89 ISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
+++++|+.+...|+..+....++.|+++|+||+|+.+..... ........+..+++..++...+..+++++||++|+|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 161 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG 161 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence 999999998557988888777789999999999997654211 111222346778888999888866899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177 167 VKTVFDAAIKVVLQPPKPKKRKRKARPCIFL 197 (197)
Q Consensus 167 i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~ 197 (197)
++++|.++++.+..... +.++.+.|+||
T Consensus 162 v~e~f~~l~~~~~~~~~---~~~~~~~~~~~ 189 (189)
T cd04134 162 VNEAFTEAARVALNVRP---PHPHSSACTIA 189 (189)
T ss_pred HHHHHHHHHHHHhcccc---cCcCCCcceeC
Confidence 99999999999976555 44566677765
No 11
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.5e-38 Score=225.70 Aligned_cols=172 Identities=37% Similarity=0.738 Sum_probs=150.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+++|||+|++.|..+++.+++++|++++|||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 79999999999999999999999999999999877777778889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
+++++||+.+...|...+....++.|+++||||+|+.+..... ......++++.+++.+++++++..+++++||++|+
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~ 161 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE 161 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence 9999999996578999998887899999999999996521100 01112346889999999999997789999999999
Q ss_pred C-HHHHHHHHHHHHc
Q 029177 166 N-VKTVFDAAIKVVL 179 (197)
Q Consensus 166 ~-i~~~~~~i~~~~~ 179 (197)
+ ++++|..+++.++
T Consensus 162 ~~v~~~F~~~~~~~~ 176 (178)
T cd04131 162 KSVRDIFHVATMACL 176 (178)
T ss_pred cCHHHHHHHHHHHHh
Confidence 5 9999999999765
No 12
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.7e-38 Score=230.97 Aligned_cols=174 Identities=37% Similarity=0.722 Sum_probs=152.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+|+|++|||||||+++|..+.|+..+.||....+...+.+++..+.+.+||++|++.|..+++.+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999877777778889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++|+.+...|...+....++.|+++||||+|+.++.... .......+++.+++..++++.++.+|+||||++++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 161 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 9999999999778888887777899999999999997642111 11122345888999999999997799999999998
Q ss_pred C-HHHHHHHHHHHHcCC
Q 029177 166 N-VKTVFDAAIKVVLQP 181 (197)
Q Consensus 166 ~-i~~~~~~i~~~~~~~ 181 (197)
+ ++++|..++.+++..
T Consensus 162 ~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 162 RSVRDVFHVATVASLGR 178 (222)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 5 999999999987764
No 13
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.3e-38 Score=229.91 Aligned_cols=177 Identities=35% Similarity=0.633 Sum_probs=151.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
||+++|.+|||||||+++|..+.|...+.++..+.+...+.+++..+.+++||+||+++|...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888766666777888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 89 ISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
+++++++.+ ..|+..+.... ++.|+++|+||+|+.+... +...++..+++.++. +++++||++|
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 999999998 67877776543 4789999999999976443 677778889988886 8999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCc---------ccccCCCCCcccC
Q 029177 165 QNVKTVFDAAIKVVLQPPKP---------KKRKRKARPCIFL 197 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~~~~~~---------~~~~~k~~~c~~~ 197 (197)
+|++++|.++++.+...+.. .++.+|+++||+|
T Consensus 149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 99999999999877533222 3456788888876
No 14
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.4e-38 Score=227.14 Aligned_cols=184 Identities=49% Similarity=0.882 Sum_probs=157.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|.++.+...+.++....+...+... +..+.+++|||||++++...++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888866666666665 77789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177 87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
|++++++++.+...|+..+....++.|+++|+||+|+.... ...+.+..+++.+++..++..+++++||++|+|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK------NLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc------cccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 99999999998667888777666789999999999996532 112346788999999999876899999999999
Q ss_pred HHHHHHHHHHHHcCCCCc--ccccCCCCCcccC
Q 029177 167 VKTVFDAAIKVVLQPPKP--KKRKRKARPCIFL 197 (197)
Q Consensus 167 i~~~~~~i~~~~~~~~~~--~~~~~k~~~c~~~ 197 (197)
++++|..+++.+...... .++++++++|++|
T Consensus 155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 999999999998876655 3456777778776
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=218.07 Aligned_cols=171 Identities=32% Similarity=0.557 Sum_probs=155.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
+...+||+++|++|+|||||++++..++|...+..|+ .+...+.+.+++..+.+++|||+||++|.++.-.+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3568999999999999999999999999999999998 477788999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+++||++++.||+.+ ..|.+.+-.+. ...|+||+|||.|+.+.. .+.++.+.+++||...|.+|||
T Consensus 86 vlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyf 156 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYF 156 (210)
T ss_pred EEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeE
Confidence 999999999999999 88988776554 258999999999997631 2459999999999999999999
Q ss_pred EecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
++|||+..|+.++|..+.+.++....
T Consensus 157 EtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 157 ETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred EecccccccHHHHHHHHHHHHHhccc
Confidence 99999999999999999998876664
No 16
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-38 Score=218.63 Aligned_cols=168 Identities=30% Similarity=0.584 Sum_probs=155.0
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 80 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 80 (197)
|.....+|++++|+.|||||+|+.+|...+|.+.+..|++ +.-...+.++++.+.+++|||+||+.|++....+++.+.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 3455679999999999999999999999999999988885 555778899999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 81 VFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
++++|||+++++||..+ ..|+..++.+. ++.-++++|||+|+...+. ++.+++++||++.+. .++++
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET 148 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET 148 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence 99999999999999999 89999999986 8999999999999988765 999999999999987 79999
Q ss_pred cccCCCCHHHHHHHHHHHHcCC
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
||++++|++|.|..+...+++.
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRK 170 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999998877644
No 17
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.8e-37 Score=221.05 Aligned_cols=172 Identities=55% Similarity=0.990 Sum_probs=149.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
.+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+++||++|+++|...+..+++++|++++||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999999999889999987777767778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|++++++++.+...|...+....+++|+++|+||+|+....... ......+.+..+++++++++.+..+++++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 99999999998557988888777789999999999986542211 1122335688899999999998668999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029177 165 QNVKTVFDAAIKVV 178 (197)
Q Consensus 165 ~~i~~~~~~i~~~~ 178 (197)
+|++++|+.+++.+
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 18
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.9e-37 Score=224.75 Aligned_cols=163 Identities=29% Similarity=0.554 Sum_probs=144.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+.|+++|++|||||||+++|..+.|...+.+|.. +.+...+.+++..+.+++||++|+++|+.++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999999888888875 555667888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|+++++||+.+ ..|+..+.... ++.|+++||||+|+...+. +..+++.+++++....+++++||++|+
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~~~~etSAktg~ 149 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNF 149 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 99999999999 78988887665 5899999999999976443 888889999988633489999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 029177 166 NVKTVFDAAIKVVLQP 181 (197)
Q Consensus 166 ~i~~~~~~i~~~~~~~ 181 (197)
|++++|.++++.+.+.
T Consensus 150 gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 150 NVDEIFLKLVDDILKK 165 (202)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999987653
No 19
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=223.38 Aligned_cols=180 Identities=34% Similarity=0.588 Sum_probs=152.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
..+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++|||||+++|..++..+++.+|++++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 45899999999999999999999999988888888777777788899889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||++++++++.+ ..|...+.... +++|+++|+||+|+.+.+. +..+++..+++.++. +++++||++
T Consensus 84 ~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak~ 151 (189)
T PTZ00369 84 YSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAKQ 151 (189)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCCC
Confidence 999999999999 67877776543 4889999999999865443 677788888888886 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCcc----cccCCCCCcccC
Q 029177 164 QQNVKTVFDAAIKVVLQPPKPK----KRKRKARPCIFL 197 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~~~~~----~~~~k~~~c~~~ 197 (197)
|.|++++|.++++.+.+..... +.+++++-|+||
T Consensus 152 ~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (189)
T PTZ00369 152 RVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL 189 (189)
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence 9999999999998776543322 233444447765
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=207.58 Aligned_cols=166 Identities=31% Similarity=0.628 Sum_probs=151.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||++||++|||||||+.+|..+.|.+....|+ .++-.+.+.+++..+.+.+|||+||++|+.+.+.++++|.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 346999999999999999999999999987776666 4666788899999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||++.+++|..+ ..|++.+..++ +++-.++|+||+|...++. +..+++..|++.+++ .|+++||
T Consensus 89 lVYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SA 156 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSA 156 (209)
T ss_pred EEEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcch
Confidence 99999999999999 99999998887 5777789999999876555 999999999999998 7999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~ 182 (197)
++.+|++..|++++..++..+
T Consensus 157 kt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 157 KTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhhccHHHHHHHHHHHHhcCc
Confidence 999999999999999887543
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=5.5e-37 Score=217.97 Aligned_cols=164 Identities=25% Similarity=0.494 Sum_probs=146.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
.+||+++|.+|||||||+++|..+.+...+.++....+...+.+++..+.+++||+||++++..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 48999999999999999999999999888888887777777888998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|++++.||+.+ ..|...+.... +++|+++|+||+|+.+.+. ++.+++..+++..+. +++++||++|
T Consensus 82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~ 149 (172)
T cd04141 82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR 149 (172)
T ss_pred ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence 99999999999 66777776542 5799999999999976543 788899999999987 8999999999
Q ss_pred CCHHHHHHHHHHHHcCCC
Q 029177 165 QNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~~~~ 182 (197)
.|++++|+++++.+.+..
T Consensus 150 ~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 150 HYIDDAFHGLVREIRRKE 167 (172)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887533
No 22
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.6e-36 Score=215.90 Aligned_cols=170 Identities=65% Similarity=1.110 Sum_probs=147.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+.++..+.|..++.++....+...+..++..+.+++|||+|++.+...+..+++++|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999999999899898877777777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++|+.+...|+..+....++.|+++|+||+|+.+..... ......+.++.+++.+++++++..+++++||++|+
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 161 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK 161 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence 9999999998567888887776789999999999996532110 11122346889999999999997689999999999
Q ss_pred CHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKV 177 (197)
Q Consensus 166 ~i~~~~~~i~~~ 177 (197)
|++++|+.+++.
T Consensus 162 ~i~~~f~~l~~~ 173 (174)
T cd01871 162 GLKTVFDEAIRA 173 (174)
T ss_pred CHHHHHHHHHHh
Confidence 999999999864
No 23
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=208.50 Aligned_cols=164 Identities=32% Similarity=0.615 Sum_probs=153.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..++.+|+|++|+|||+|+.+|..+.|..+|..|++ +....++.++|..+.+++||++|++.|+.+...++++.+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 467899999999999999999999999999999884 6667789999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|||+++.+||... .+|++.++..++.+|-++||||.|..+.+. +..++++.|+.+.++ .+|++||+++
T Consensus 87 VYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~ 154 (198)
T KOG0079|consen 87 VYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKEN 154 (198)
T ss_pred EEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhc
Confidence 9999999999999 999999999999999999999999987665 899999999999997 8999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029177 165 QNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~~~ 181 (197)
+|++..|.-|.+.+++.
T Consensus 155 ~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 155 ENVEAMFHCITKQVLQA 171 (198)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 99999999988876543
No 24
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.1e-36 Score=220.18 Aligned_cols=165 Identities=27% Similarity=0.437 Sum_probs=143.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+||+++|++|||||||+++|.++.+...+.+|... .....+.++ +..+.+++||+||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999998888888753 445566777 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 86 FSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
||++++++++.+ ..|...+.... .++|+++|+||+|+...+. +..+++.++++..+..+++++|
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S 149 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence 999999999999 78887776432 5789999999999975333 7888999999999966899999
Q ss_pred ccCCCCHHHHHHHHHHHHcCCCC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
|++|+|++++|.++++.+....+
T Consensus 150 ak~~~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 150 AKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHhch
Confidence 99999999999999998876543
No 25
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-37 Score=214.52 Aligned_cols=165 Identities=33% Similarity=0.594 Sum_probs=153.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++.|||+++|+++||||-|+.||..+.|..+..+|+ .+.....+.++++.+..++|||+||++|+.....+++++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 468999999999999999999999999999998998 4666788999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++.+.+|+.+ .+|+..++.+. +++++++||||+||.+.+. ++.++++.++...+. .++++||.
T Consensus 92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl 159 (222)
T KOG0087|consen 92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSAL 159 (222)
T ss_pred EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEeccc
Confidence 99999999999988 99999999998 7999999999999988655 999999999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
++.|++++|..++..+++.
T Consensus 160 ~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 160 DATNVEKAFERVLTEIYKI 178 (222)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 9999999999988877543
No 26
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=216.17 Aligned_cols=179 Identities=64% Similarity=1.103 Sum_probs=166.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+|++|||+.++|||+|+..+..+.|+..|.||..+.|+..+.++ ++.+.+.+|||+||++|..+++..+..+|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+||++++++|++++...|+..+..+++++|+++||+|.||..+..- ...+....+++.+++..++++.|+..|+++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999999999999999999999999999999999954321 24455667899999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
+++.|++++|+..+..++..++
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999998876
No 27
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=7.6e-36 Score=216.83 Aligned_cols=165 Identities=31% Similarity=0.573 Sum_probs=145.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+..+||+++|++|||||||+++|.++.+...+.+|.. +.....+.+++..+.+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 3568999999999999999999999998877878774 444566777888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
+|||++++++++.+ ..|+..+....+..|+++|+||+|+.+... +..+++..+++..+. +++++||++
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999999 789998887778899999999999976443 677888889988885 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029177 164 QQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~ 181 (197)
|.|++++|+++.+.++..
T Consensus 152 ~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 152 NINVEEMFNCITELVLRA 169 (199)
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999999988654
No 28
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.3e-35 Score=211.30 Aligned_cols=171 Identities=61% Similarity=1.054 Sum_probs=149.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 89 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 89 (197)
|+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888888887777777888898899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177 90 SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167 (197)
Q Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 167 (197)
++++++.+...|+..+....++.|+++|+||+|+...... .......+.+..+++.++++..+..+++++||++|+|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 9999999866799998887789999999999999763321 11223334578889999999999778999999999999
Q ss_pred HHHHHHHHHHHcC
Q 029177 168 KTVFDAAIKVVLQ 180 (197)
Q Consensus 168 ~~~~~~i~~~~~~ 180 (197)
+++|+.+++.+++
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998764
No 29
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.1e-35 Score=218.46 Aligned_cols=162 Identities=28% Similarity=0.457 Sum_probs=142.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+||+++|++|||||||+++|.++.+...+.+|.. +.+...+.+++ ..+.+++||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888888884 55666777754 568999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 86 FSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
||++++++++.+ ..|...+.... .+.|+++|+||+|+.+.+. +..+++.++++.++. +++++||
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA 148 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA 148 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999999 78988887664 3568999999999975443 788889999999986 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~ 181 (197)
++|+|++++|+++.+.+...
T Consensus 149 ktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988643
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.5e-35 Score=209.52 Aligned_cols=162 Identities=31% Similarity=0.634 Sum_probs=142.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
.+||+++|++|||||||+++|..+.+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999888877765443 45567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+... ++.+++..+++..+. +++++||++|
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~ 149 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG 149 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999999 78888776554 6789999999999976543 778889999998886 8999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029177 165 QNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~~ 180 (197)
+|++++|.++++.+.+
T Consensus 150 ~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 150 ENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999987743
No 31
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2e-35 Score=208.05 Aligned_cols=159 Identities=30% Similarity=0.590 Sum_probs=140.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||++++..+.+...+.+++.+.+...+.+++..+.+++||+||+++|...+..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888776667778889988999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++++.+ ..|...+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++||++|+
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (163)
T cd04136 82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSKI 149 (163)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCCC
Confidence 9999999998 67777776543 5799999999999976443 667778888888884 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKVV 178 (197)
Q Consensus 166 ~i~~~~~~i~~~~ 178 (197)
|++++|+++++.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998764
No 32
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.7e-35 Score=210.54 Aligned_cols=177 Identities=29% Similarity=0.514 Sum_probs=150.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|.++.+...+.++... .....+.+++..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998777777753 33556777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|+++++++..+ ..|+..+.... .+.|+++++||+|+.+... +..+++..+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~ 148 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI 148 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999999 67988887765 4689999999999976543 777888899988887 89999999999
Q ss_pred CHHHHHHHHHHHHcCCCCcc--------cccCCCCCccc
Q 029177 166 NVKTVFDAAIKVVLQPPKPK--------KRKRKARPCIF 196 (197)
Q Consensus 166 ~i~~~~~~i~~~~~~~~~~~--------~~~~k~~~c~~ 196 (197)
|++++|.++++.+....... +...|+++|.+
T Consensus 149 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 149 NVEEAFILLVKLIIKRLEEQELSPKNIKQQFKKKNNCFI 187 (188)
T ss_pred CHHHHHHHHHHHHHHHhhcCcCCccccccccccccCccc
Confidence 99999999999886543332 34567777765
No 33
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=3.3e-35 Score=207.32 Aligned_cols=160 Identities=28% Similarity=0.577 Sum_probs=141.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|.+|||||||++++..+.+...+.+++...+...+.+++..+.+++||+||++.+..++..+++++|++++|||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence 69999999999999999999999888888888877677778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++.+++.+ ..|...+.... ++.|+++|+||+|+.+... +..+++.++++..+. +++++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (164)
T cd04175 82 ITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAKI 149 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCCC
Confidence 9999999998 66766665433 6899999999999976543 666777888888886 89999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029177 166 NVKTVFDAAIKVVL 179 (197)
Q Consensus 166 ~i~~~~~~i~~~~~ 179 (197)
|++++|.++.+.+.
T Consensus 150 ~v~~~~~~l~~~l~ 163 (164)
T cd04175 150 NVNEIFYDLVRQIN 163 (164)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998653
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.2e-35 Score=206.94 Aligned_cols=163 Identities=30% Similarity=0.592 Sum_probs=144.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..+||+++|++|+|||||+++|.++.+...+.++... .....+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999999998888888754 344567788888999999999999999888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..++..++. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA 149 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999 67988887764 5799999999999986543 677888889988887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029177 164 QQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~ 180 (197)
|.|++++|.++.+.+..
T Consensus 150 ~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 150 NINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 35
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.1e-35 Score=210.86 Aligned_cols=162 Identities=37% Similarity=0.688 Sum_probs=140.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+||+++|++|||||||+++|..+.+.. .+.++....+ ...+.+++..+.+++||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 5566664333 44567788889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
||++++++++.+ ..|+..+.... .++|+++|+||+|+...+. +..+++..++..++. +++++||++|
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999999 77888888766 4789999999999975443 677788889988886 8999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029177 165 QNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~~~ 181 (197)
+|++++|.++.+.+...
T Consensus 149 ~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 149 LNVELAFTAVAKELKHR 165 (191)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988665
No 36
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.8e-34 Score=205.34 Aligned_cols=172 Identities=56% Similarity=1.016 Sum_probs=148.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|+|||||+++|..+.+...+.++..+.+...+.+++..+.+.+||+||++.|...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877777778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++.+++.+...|...+....++.|+++|+||+|+.+.... .......+.+..+++..+++..+..+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 999999999866788888766678999999999998654311 112222345778899999999998789999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029177 166 NVKTVFDAAIKVVL 179 (197)
Q Consensus 166 ~i~~~~~~i~~~~~ 179 (197)
|++++|+.+++.++
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998763
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=7.5e-35 Score=204.95 Aligned_cols=158 Identities=34% Similarity=0.603 Sum_probs=140.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|..+.+.+.+.++... .....+.+++..+.+++||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888753 44566778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..+++.++. +++++||++|.
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999999 78888887665 4799999999999976543 778899999999886 89999999999
Q ss_pred CHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKV 177 (197)
Q Consensus 166 ~i~~~~~~i~~~ 177 (197)
|++++|.+|.+.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 38
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=9.3e-35 Score=212.90 Aligned_cols=168 Identities=28% Similarity=0.435 Sum_probs=132.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|.+|||||||+++|..+.|.. +.++....+.. .....+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999864 45665332221 11245789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh---------hcCCCCCCCccHHHHHHHHHHcCC-----
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY---------LINHPGATPITTAQGEELKKLIGA----- 153 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----- 153 (197)
++++++|+.+...|........+++|+++|+||+|+.+.... .......+.+..+++..++++.+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 999999999944444443333367999999999999752110 011122456899999999998872
Q ss_pred --------cEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 154 --------AVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 154 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+|+++||++|+|++++|..+++.++
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999998765
No 39
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=2e-34 Score=205.11 Aligned_cols=170 Identities=54% Similarity=0.963 Sum_probs=146.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|+|||||++++.++.+..++.+|..+.+...+.+++..+.+++||+||++.+...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999999899898877777778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++|+.+...|+..+....++.|+++++||+|+...... .......+.+..+++..+++..+..+++++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 999999999856788888766678999999999998653210 011123356788899999999997789999999999
Q ss_pred CHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKV 177 (197)
Q Consensus 166 ~i~~~~~~i~~~ 177 (197)
|++++|+.++.+
T Consensus 161 ~v~~lf~~~~~~ 172 (173)
T cd04130 161 NLKEVFDTAILA 172 (173)
T ss_pred CHHHHHHHHHhh
Confidence 999999988753
No 40
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-36 Score=199.28 Aligned_cols=172 Identities=30% Similarity=0.548 Sum_probs=155.2
Q ss_pred CCCCc--ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcC
Q 029177 1 MMNTA--RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR 77 (197)
Q Consensus 1 ~~~~~--~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 77 (197)
||++. ..+|++++|+.|+|||+|+.+|..+.|.++...|.+ ++-+..+.+.++.+.+++|||+||++|++....+++
T Consensus 1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR 80 (214)
T KOG0086|consen 1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 80 (214)
T ss_pred CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence 66554 578999999999999999999999999888877874 555777888999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 78 GADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+|.++++|||++++++|+.+ ..|+...+... +++-+++++||.|+.+.++ ++..++..|+++... .+
T Consensus 81 GAAGAlLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~f 148 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MF 148 (214)
T ss_pred cccceEEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-ee
Confidence 99999999999999999999 89999888776 6888999999999998876 999999999999997 89
Q ss_pred EEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
.++||++|+|++|.|-...+.++.+.+.
T Consensus 149 lETSa~TGeNVEEaFl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCARTILNKIES 176 (214)
T ss_pred eeecccccccHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998888765433
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=6.8e-35 Score=205.23 Aligned_cols=159 Identities=40% Similarity=0.841 Sum_probs=148.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
||+++|++|||||||+++|.++.+...+.++. .+.+...+..++..+.+++||++|++.+...+..+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999998887 67778888999999999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177 88 LISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
+++++|++.+ ..|+..+....+ +.|++++|||.|+.+.+. ++.+++++++++++ .+|+++||+++.|
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELG-VPYFEVSAKNGEN 148 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTT-SEEEEEBTTTTTT
T ss_pred cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhC-CEEEEEECCCCCC
Confidence 9999999999 799999998886 799999999999987554 89999999999999 5999999999999
Q ss_pred HHHHHHHHHHHHc
Q 029177 167 VKTVFDAAIKVVL 179 (197)
Q Consensus 167 i~~~~~~i~~~~~ 179 (197)
+.++|..+++.+.
T Consensus 149 v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 149 VKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.6e-34 Score=204.08 Aligned_cols=160 Identities=30% Similarity=0.628 Sum_probs=140.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|.++.+...+.++... .....+..++..+.+++||+||++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888887753 33445666778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++.++. +++++||++|.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI 149 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999999 78988887765 5789999999999976543 667888889988887 89999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029177 166 NVKTVFDAAIKVVL 179 (197)
Q Consensus 166 ~i~~~~~~i~~~~~ 179 (197)
|++++|+++...+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (165)
T cd01865 150 NVKQVFERLVDIIC 163 (165)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=9.4e-35 Score=207.94 Aligned_cols=163 Identities=36% Similarity=0.618 Sum_probs=141.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEEC----------CeEEEEEEEecCCCcCccccccc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL 74 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~ 74 (197)
+.+||+++|++|||||||+++|..+.+...+.++.. +.....+.+. +..+.+++||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 568999999999999999999999999888888774 3334444443 45689999999999999999999
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG 152 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+++++|++++|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++..+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~ 151 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKYG 151 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHcC
Confidence 99999999999999999999999 78988887653 5789999999999976543 77888999999998
Q ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 153 AAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
. +++++||++|.|++++|+++.+.+++
T Consensus 152 ~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 152 I-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred C-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6 89999999999999999999987754
No 44
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=195.90 Aligned_cols=165 Identities=30% Similarity=0.619 Sum_probs=149.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..+|++++|.+.||||||+.++.+..|...+.+|.+ +.-.+++--..+.+.+|+|||+|+++|+.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 457999999999999999999999999988888874 4445556567778999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
+||++|.+||..+ +.|..+++.++ .+.|+|+|+||||+...+. ++.+.++.+++++|. .+|++||+.
T Consensus 100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~ 167 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKE 167 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccc
Confidence 9999999999999 89999999887 7999999999999987765 999999999999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 029177 164 QQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~~ 182 (197)
+.|++.+|+.++..+.++.
T Consensus 168 NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 168 NINVKQVFERLVDIICDKM 186 (193)
T ss_pred cccHHHHHHHHHHHHHHHh
Confidence 9999999999998875543
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.8e-34 Score=212.19 Aligned_cols=164 Identities=26% Similarity=0.451 Sum_probs=142.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||++++..+.+...+.++.. +.+...+..++..+.+.+||++|++.|..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4578999999999999999999999999888888874 445556677778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
+|||++++++++.+ ..|+..+....+++|+++||||+|+.... +..+++ .+++..+. +++++||++
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS 156 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence 99999999999999 78999888777889999999999996422 344444 67777775 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 029177 164 QQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~~ 182 (197)
|+|++++|.++++.+....
T Consensus 157 ~~~i~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 157 NYNFEKPFLYLARKLAGDP 175 (219)
T ss_pred CCCHHHHHHHHHHHHHcCc
Confidence 9999999999999887553
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.2e-34 Score=206.18 Aligned_cols=170 Identities=28% Similarity=0.546 Sum_probs=141.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|..+.|...+.+|.. +.+...+.+++..+.+++||++|++.|...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999888888885 444567888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|++++++++.+ ..|+..+....+ ..| ++|+||+|+..... ...+....+++.++++..+. +++++||++|+
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999999 789888876543 466 67899999963210 00111234677889988886 89999999999
Q ss_pred CHHHHHHHHHHHHcCCCCcc
Q 029177 166 NVKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 166 ~i~~~~~~i~~~~~~~~~~~ 185 (197)
|++++|.++.+.+...+..+
T Consensus 153 ~v~~lf~~l~~~l~~~~~~~ 172 (182)
T cd04128 153 NVQKIFKIVLAKAFDLPLTI 172 (182)
T ss_pred CHHHHHHHHHHHHHhcCCCh
Confidence 99999999999887655443
No 47
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.4e-34 Score=203.25 Aligned_cols=161 Identities=30% Similarity=0.648 Sum_probs=142.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988877777764 44456677888889999999999999999989999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
||+++++++..+ ..|+..+.... ++.|+++++||+|+.+... +..+++..+++..+. +++++||++|
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA 149 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 999999999999 77888887765 5799999999999976543 777888999998887 8999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 029177 165 QNVKTVFDAAIKVVL 179 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~ 179 (197)
+|++++|.++.+.+.
T Consensus 150 ~~v~~~~~~i~~~~~ 164 (166)
T cd01869 150 TNVEQAFMTMAREIK 164 (166)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998774
No 48
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=6.8e-34 Score=204.74 Aligned_cols=186 Identities=46% Similarity=0.770 Sum_probs=152.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
.||+++|++|+|||||+++|..+.+...+.++....+...+.+++..+.+.+||++|++.+....+..++.+|+++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988887777777766666677778888899999999999888777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 167 (197)
++++++++.+...|+..+....+++|+++|+||+|+.............+.+..+++..+++..+..++|++||++|+|+
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV 161 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence 99999999986679999887778899999999999864321111112234567788899999999778999999999999
Q ss_pred HHHHHHHHHHHcCCCCcccccCCCCCccc
Q 029177 168 KTVFDAAIKVVLQPPKPKKRKRKARPCIF 196 (197)
Q Consensus 168 ~~~~~~i~~~~~~~~~~~~~~~k~~~c~~ 196 (197)
+++|+++.+.++.-+++. +..+||++
T Consensus 162 ~~~f~~l~~~~~~~~~~~---~~~~~~~~ 187 (187)
T cd04129 162 DDVFEAATRAALLVRKSE---PGAGCCII 187 (187)
T ss_pred HHHHHHHHHHHhcccCcc---cccCcccC
Confidence 999999998886655433 34556653
No 49
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.5e-34 Score=202.62 Aligned_cols=159 Identities=30% Similarity=0.584 Sum_probs=139.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|.+|||||||++++..+.+...+.++....+...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d 81 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence 79999999999999999999999998888887766666777888888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++++.+ ..|...+.... .++|+++|+||+|+..... +...++..++...+. +++++||+++.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (163)
T cd04176 82 LVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSKT 149 (163)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCCC
Confidence 9999999998 67777766543 5899999999999965433 666677888888876 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKVV 178 (197)
Q Consensus 166 ~i~~~~~~i~~~~ 178 (197)
|++++|.++.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
No 50
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3e-34 Score=202.59 Aligned_cols=161 Identities=30% Similarity=0.543 Sum_probs=141.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
+.+||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988777777664 4445667778888899999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+. +..+++.++++..+...++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999998 78988887654 5899999999999976543 6778889999998887899999999
Q ss_pred CCCHHHHHHHHHHH
Q 029177 164 QQNVKTVFDAAIKV 177 (197)
Q Consensus 164 ~~~i~~~~~~i~~~ 177 (197)
|.|++++|.++.+.
T Consensus 151 ~~~v~~~~~~l~~~ 164 (165)
T cd01864 151 SQNVEEAFLLMATE 164 (165)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 51
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=5.5e-34 Score=200.57 Aligned_cols=159 Identities=28% Similarity=0.509 Sum_probs=136.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|..+.+.+.+.++.. ..+.....+++..+.+++||++|++.|...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999998877776653 444556677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177 87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
|++++.+++.+ ..|+..+....++.|+++|+||+|+... ...+...++...+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g 145 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN 145 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999998 7898888877678999999999998532 12345566777775 899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 029177 167 VKTVFDAAIKVVLQP 181 (197)
Q Consensus 167 i~~~~~~i~~~~~~~ 181 (197)
++++|+.+++.+...
T Consensus 146 v~~l~~~l~~~~~~~ 160 (161)
T cd04124 146 VVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.6e-34 Score=202.65 Aligned_cols=160 Identities=34% Similarity=0.619 Sum_probs=140.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+++|.++.+...+.++..+.+......++..+.+++||+||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999988888888776677777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++++.+ ..|...+.+.. .+.|+++|+||+|+.+.+. +..+++..+++..+. +++++||++|.
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence 9999999998 66766665443 4789999999999976443 677788888888885 89999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029177 166 NVKTVFDAAIKVVL 179 (197)
Q Consensus 166 ~i~~~~~~i~~~~~ 179 (197)
|++++|+++++.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 53
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=4.6e-34 Score=206.28 Aligned_cols=168 Identities=42% Similarity=0.652 Sum_probs=133.5
Q ss_pred eEEEEEECCCCCCHHHHHH-HHhcC-----CCCCCCCCcee--eeeeEE--------EEECCeEEEEEEEecCCCcCccc
Q 029177 7 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR 70 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~-~l~~~-----~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 70 (197)
.+||+++|++|||||||+. ++.++ .+...+.||.. +.+... +.+++..+.+++|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 55544 34566777763 333322 256888999999999999752
Q ss_pred ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh---------cCCCCCCCccH
Q 029177 71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL---------INHPGATPITT 141 (197)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---------~~~~~~~~~~~ 141 (197)
....+++++|++++|||++++.||+.+...|...+....++.|+++||||+|+.+..... ......+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 456688999999999999999999998557988888777789999999999996521000 00012356899
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 142 AQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
+++++++++++. +|++|||++|+|++++|..+++.
T Consensus 160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999998 99999999999999999999874
No 54
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.2e-34 Score=202.49 Aligned_cols=158 Identities=26% Similarity=0.509 Sum_probs=137.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||++++.++.+...+.++....+...+..+...+.+.+||+||++++..++..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888766666666677788999999999999999888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 88 LISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
++++++++.+ ..|...+.... +++|+++|+||+|+.+.+. +..+++..++..++. +++++||++
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence 9999999998 67766665532 5799999999999976433 677788888888886 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 029177 164 QQNVKTVFDAAIKV 177 (197)
Q Consensus 164 ~~~i~~~~~~i~~~ 177 (197)
|+|++++|++|+..
T Consensus 150 g~~v~~~f~~l~~~ 163 (165)
T cd04140 150 NHNVQELFQELLNL 163 (165)
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999999864
No 55
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.1e-33 Score=204.72 Aligned_cols=166 Identities=33% Similarity=0.534 Sum_probs=141.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+||+++|++|||||||+++|.++.+.. .+.++....+ ...+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 5777775444 55678899889999999999999999998899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.. ...+.+..+++.+++...+. +++++||++++
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQD------RSLRQVDFHDVQDFADEIKA-QHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEcccccccc------cccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 999999999998 77888887766789999999999986432 11234566778888888886 89999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 029177 166 NVKTVFDAAIKVVLQP 181 (197)
Q Consensus 166 ~i~~~~~~i~~~~~~~ 181 (197)
|++++|+++.+.+.+.
T Consensus 153 gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 153 NVDELFQKVAEDFVSR 168 (193)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999888654
No 56
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=4.4e-34 Score=200.75 Aligned_cols=158 Identities=38% Similarity=0.639 Sum_probs=139.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+++|.++.+...+.++..+.+...+.+++..+.+++||+||++++..++..+++.+|++++|||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 79999999999999999999999988888888877777777888888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++.+++.+ ..|...+.... .+.|+++|+||+|+.+.. ....++.+++...+. +++++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (162)
T cd04138 82 INSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTRQ 148 (162)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCCC
Confidence 9999999998 66766666543 579999999999996532 567778888888887 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKVV 178 (197)
Q Consensus 166 ~i~~~~~~i~~~~ 178 (197)
|++++|+++++.+
T Consensus 149 gi~~l~~~l~~~~ 161 (162)
T cd04138 149 GVEEAFYTLVREI 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=8.6e-34 Score=200.49 Aligned_cols=159 Identities=29% Similarity=0.508 Sum_probs=135.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||++++..+.+...+.++.. +.....+..++..+.+.+||++|++++...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999888878888774 334455566778899999999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177 87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
|++++++++.+ ..|+..+.....++|+++|+||+|+.+.. +. .+..++++..+. +++++||++|+|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~ 146 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN 146 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999999 78998888877789999999999997321 22 334566666554 899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 029177 167 VKTVFDAAIKVVLQ 180 (197)
Q Consensus 167 i~~~~~~i~~~~~~ 180 (197)
++++|+++++.+..
T Consensus 147 v~~~f~~l~~~~~~ 160 (166)
T cd00877 147 FEKPFLWLARKLLG 160 (166)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999998865
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=4.2e-34 Score=202.02 Aligned_cols=160 Identities=24% Similarity=0.525 Sum_probs=140.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888875 334567778888899999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC------CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 87 SLISKASYENISKKWIPELRHYA------PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
|++++++++.+ ..|+..+.... .+.|+++|+||+|+.+... +..++...++...+. +++++|
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 148 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS 148 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 99999999998 78888887654 3689999999999974332 677888888888885 899999
Q ss_pred ccCCCCHHHHHHHHHHHHc
Q 029177 161 SKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~ 179 (197)
|++++|++++|+++++.++
T Consensus 149 a~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 149 ACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998765
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=3.8e-34 Score=201.35 Aligned_cols=158 Identities=34% Similarity=0.571 Sum_probs=139.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC--CeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
+||+++|++|+|||||+++|.++.+...+.++....+ ...+.+. +..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999988888888874433 4556666 777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|||++++++++.+ ..|+..+....+++|+++|+||+|+..... +..+++..+++.++. +++++||+++
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD 148 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 9999999999998 789888887778899999999999976543 677888999999987 8999999999
Q ss_pred CCHHHHHHHHHHH
Q 029177 165 QNVKTVFDAAIKV 177 (197)
Q Consensus 165 ~~i~~~~~~i~~~ 177 (197)
.|++++|+++.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999764
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=7.3e-34 Score=200.25 Aligned_cols=160 Identities=34% Similarity=0.620 Sum_probs=140.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
.+||+++|++|+|||||++++.++.+...+.++....+.....+++..+.+++||+||++++...+..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 48999999999999999999999988888888877666667778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|++++.+++.+ ..|...+.... .+.|+++++||+|+..... +..+++.++++..+. +++++||++|
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR 149 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence 99999999998 66776665542 5789999999999976433 667778888888886 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029177 165 QNVKTVFDAAIKVV 178 (197)
Q Consensus 165 ~~i~~~~~~i~~~~ 178 (197)
.|++++|+++++.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998764
No 61
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.2e-33 Score=200.47 Aligned_cols=162 Identities=34% Similarity=0.631 Sum_probs=140.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
++..+||+++|++|||||||+++|..+.+...+.++.. +.....+.+++..+.+++||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999988877777764 34456677889999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
++|||++++++++.+ ..|...+.... +++|+++|+||+|+... .+..+++.++++..+..+++
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-----------QVSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccccc-----------ccCHHHHHHHHHHCCCCeEE
Confidence 999999999999998 77877665432 46899999999998632 26778899999999876899
Q ss_pred EecccCCCCHHHHHHHHHHH
Q 029177 158 ECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~ 177 (197)
++||++|+|++++|.++++.
T Consensus 150 e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999875
No 62
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.2e-35 Score=195.70 Aligned_cols=162 Identities=31% Similarity=0.567 Sum_probs=145.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.++++++||++-||||+|++.|..+++..-..||. .+.+...+.+ ++..+.+++|||+||++|+++...++++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 57999999999999999999999999998888888 4666665554 678899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCCE-EEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA--PTVPI-VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
+|||++|++||+.+ +.|+.....+. |..++ .+||.|+|+...++ ++.++++.++...|. .|+++|
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS 154 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS 154 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence 99999999999999 88988776665 45554 68999999987665 999999999999998 899999
Q ss_pred ccCCCCHHHHHHHHHHHHc
Q 029177 161 SKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~ 179 (197)
|++|.|+++.|+.+.+.+.
T Consensus 155 ak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred ccCCCcHHHHHHHHHHHHH
Confidence 9999999999999988764
No 63
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=3.5e-33 Score=198.89 Aligned_cols=171 Identities=51% Similarity=0.937 Sum_probs=145.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
.||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+||++|++.+...+...+.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888876666677788888999999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++++.+...|...+....++.|+++|+||+|+.+..... ........+...++++++...+..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 9999999998667888887766789999999999986532110 11112234667888999999887789999999999
Q ss_pred CHHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKVV 178 (197)
Q Consensus 166 ~i~~~~~~i~~~~ 178 (197)
|++++|+++.+.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999765
No 64
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.5e-34 Score=207.61 Aligned_cols=163 Identities=33% Similarity=0.571 Sum_probs=141.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+||+++|++|||||||+++|.++.+...+.++.. +.+...+.+ ++..+.+++||++|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999998877777764 445555655 4667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++++++.+ ..|+..+.... ...|+++|+||+|+.+... +..+++.++++.++. +++++||+
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak 149 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR 149 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence 9999999999999 77888776554 3578899999999976543 788889999999995 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+|+|++++|+++.+.+...
T Consensus 150 ~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 150 TGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999877644
No 65
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-34 Score=192.38 Aligned_cols=164 Identities=30% Similarity=0.585 Sum_probs=149.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...|||+++|..|+|||+|+++|..+-|++....|+ .+.+-+++.++++.+.+++|||+|+++|+++...+++.||+++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 457899999999999999999999999998888887 5777889999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
++||++...+|+-+ ..|+..+..+. ..+--|+|+||.|+.+.++ ++...+++|.+.... .|.++||+
T Consensus 85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsak 152 (213)
T KOG0095|consen 85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAK 152 (213)
T ss_pred EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhccc
Confidence 99999999999999 89999999887 4566689999999988776 899999999998776 68899999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+.+|++.+|..+.-.+..
T Consensus 153 ea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 153 EADNVEKLFLDLACRLIS 170 (213)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 999999999998866643
No 66
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.7e-33 Score=198.67 Aligned_cols=161 Identities=34% Similarity=0.588 Sum_probs=141.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999988877777774 4446677788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|||++++.++..+ ..|+..+....+ ++|+++|+||+|+...+. +..++...+++..+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD 149 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999999 789888877664 699999999999976443 677888888888776 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029177 164 QQNVKTVFDAAIKVV 178 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~ 178 (197)
|+|++++|+++...+
T Consensus 150 ~~~v~~l~~~l~~~i 164 (165)
T cd01868 150 GTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 67
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.7e-33 Score=199.63 Aligned_cols=162 Identities=30% Similarity=0.506 Sum_probs=139.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
||+++|++|||||||+++|.++.|...+.++.... ....+.+++..+.+++||+||+++|...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999998988544 45667788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++++.. ..|+..+.... .+.|+++|+||+|+.+... .....+++..++++++. +++++||++|+
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~ 151 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE 151 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 9999999999 78888775543 3578999999999865321 11356677888888887 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029177 166 NVKTVFDAAIKVVLQ 180 (197)
Q Consensus 166 ~i~~~~~~i~~~~~~ 180 (197)
|++++|+.+.+.+..
T Consensus 152 ~v~~lf~~l~~~~~~ 166 (170)
T cd04108 152 NVREFFFRVAALTFE 166 (170)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998743
No 68
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.8e-33 Score=197.10 Aligned_cols=155 Identities=26% Similarity=0.393 Sum_probs=130.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+.++..+.|...+.++ ...+...+.+++..+.+++||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999999887766554 344456788899889999999999975 245678999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
+++++||+.+ ..|+..+.... +++|+++||||+|+... ..+.+..+++.+++++.+..++++|||++|+
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISES--------NPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhc--------CCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 9999999999 67888887664 57899999999998531 1234788888999988764589999999999
Q ss_pred CHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKV 177 (197)
Q Consensus 166 ~i~~~~~~i~~~ 177 (197)
|++++|..+.+.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 69
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.7e-33 Score=206.74 Aligned_cols=162 Identities=30% Similarity=0.561 Sum_probs=143.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||++|++++...+..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999999988777777774 4456778888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.+. +..+++..++...+. +++++||++
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~ 158 (216)
T PLN03110 91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE 158 (216)
T ss_pred EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78988888765 4799999999999976543 777888999988886 899999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 029177 164 QQNVKTVFDAAIKVVL 179 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~ 179 (197)
|+|++++|++++..+.
T Consensus 159 g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 159 ATNVEKAFQTILLEIY 174 (216)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988763
No 70
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.4e-35 Score=194.75 Aligned_cols=165 Identities=31% Similarity=0.617 Sum_probs=151.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...||++++|..-||||||+-|+..++|.....+|. ..+..+.+.++++...+.+|||+||++|+.+-+.+++..++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 357999999999999999999999999998888887 4566788889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++|++||+.. +.|...++... ..+.++||+||+|+.+.+. ++.+++.+++..-|+ .|+++||+
T Consensus 91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk 158 (218)
T KOG0088|consen 91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAK 158 (218)
T ss_pred EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheecccc
Confidence 99999999999999 89999988877 5688899999999988776 999999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
++.||.++|..+.+.++..
T Consensus 159 ~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 159 DNVGISELFESLTAKMIEH 177 (218)
T ss_pred cccCHHHHHHHHHHHHHHH
Confidence 9999999999998877543
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3.3e-33 Score=197.92 Aligned_cols=163 Identities=29% Similarity=0.587 Sum_probs=141.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+......+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999988777766653 4445566778888899999999999999888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|||++++++++.+ ..|+..+.... ++.|+++|+||.|+.+... +..+++..++...+. +++++||++
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 150 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT 150 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999 78998887764 6899999999999975433 777888899998887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029177 164 QQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~ 180 (197)
++|++++|.++.+.+.+
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.6e-33 Score=202.23 Aligned_cols=165 Identities=22% Similarity=0.407 Sum_probs=134.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCcCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG 78 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 78 (197)
+||+++|.+|||||||+++|.++.+...+.|++. +.+...+.+++..+.+++|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888874 444556677888899999999997655322 2234789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-HcCC
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHY----APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-LIGA 153 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (197)
+|++++|||+++++|++.+ ..|.+.+... .+++|+++|+||+|+.+.+. +..+++..++. .++.
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 149 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC 149 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence 9999999999999999998 7777766554 25799999999999976433 56666777765 4455
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
+++++||++|.|++++|+.+++.++...+.
T Consensus 150 -~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 150 -GYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred -cEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 899999999999999999999988766554
No 73
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.4e-33 Score=197.14 Aligned_cols=158 Identities=30% Similarity=0.579 Sum_probs=138.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988777777664 344556777888899999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|+++++++..+ ..|+..+.... ++.|+++++||.|+..... +..+++..+++..+. +++++||++++
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 78888776554 6899999999999976443 778888999999985 89999999999
Q ss_pred CHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKV 177 (197)
Q Consensus 166 ~i~~~~~~i~~~ 177 (197)
|++++|+++++.
T Consensus 149 ~i~~~~~~~~~~ 160 (161)
T cd04113 149 NVEEAFLKCARS 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 74
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=205.16 Aligned_cols=168 Identities=30% Similarity=0.576 Sum_probs=145.5
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 80 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 80 (197)
|.....+||+++|++|+|||||+++|....+...+.++.. +.....+.+++..+.+++||++|++.+...+..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 4455679999999999999999999999988777777764 444556778888889999999999999988888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 81 VFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
++++|||++++++++.+ ..|+..+.... ++.|+++++||+|+.+.+. +..+++.++++.++. +++++
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~ 148 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA 148 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence 99999999999999998 67877766554 5799999999999976543 788889999999887 89999
Q ss_pred cccCCCCHHHHHHHHHHHHcCC
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
||+++.|++++|.++++.+.+.
T Consensus 149 Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999888654
No 75
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=4.1e-33 Score=197.44 Aligned_cols=161 Identities=32% Similarity=0.584 Sum_probs=142.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|.+|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||+++|..++..+++.++++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 79999999999999999999999998888888876667777888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++++++.. ..|...+.... .+.|+++++||.|+...+. +..+++..+++.++..+++++||++++
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 82 VTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRT 150 (168)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence 9999999999 67777776533 5799999999999976443 677788888888885689999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029177 166 NVKTVFDAAIKVVL 179 (197)
Q Consensus 166 ~i~~~~~~i~~~~~ 179 (197)
|++++|.++...++
T Consensus 151 ~i~~~f~~i~~~~~ 164 (168)
T cd04177 151 NVDEVFIDLVRQII 164 (168)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999997653
No 76
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=5.3e-33 Score=197.23 Aligned_cols=160 Identities=29% Similarity=0.538 Sum_probs=139.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcc-cccccCcCCCcEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFLL 84 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 84 (197)
.+||+++|++|||||||++++..+.+...+.++.. +.....+.+++..+.+++||++|++.++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999988877777764 4445667788888999999999999886 578888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||+++++++..+ ..|+..+.... .++|+++|+||+|+.+... +..+++.+++..++. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~ 149 (170)
T cd04115 82 VYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSAK 149 (170)
T ss_pred EEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEecc
Confidence 9999999999999 78988887654 5799999999999976544 778888899988875 89999999
Q ss_pred C---CCCHHHHHHHHHHHH
Q 029177 163 T---QQNVKTVFDAAIKVV 178 (197)
Q Consensus 163 ~---~~~i~~~~~~i~~~~ 178 (197)
+ +++++++|.++++.+
T Consensus 150 ~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 150 DPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCcCCCCHHHHHHHHHHHh
Confidence 9 899999999998765
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.1e-33 Score=207.86 Aligned_cols=161 Identities=26% Similarity=0.438 Sum_probs=138.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+++|.++.+...+.+|+.+.+...+.+++..+.+++|||+|++.|..++..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888888877777778889999999999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh----------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 88 LISKASYENISKKWIPELRHY----------APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
++++++|+.+ ..|.+.+... ..++|+++|+||+|+...+. +..+++.+++......+++
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence 9999999999 6777666542 24799999999999975433 6777777777654344899
Q ss_pred EecccCCCCHHHHHHHHHHHHc
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
++||++|.|++++|+++.+.+.
T Consensus 150 evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999764
No 78
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.5e-33 Score=201.55 Aligned_cols=155 Identities=25% Similarity=0.472 Sum_probs=135.4
Q ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh
Q 029177 13 VGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK 91 (197)
Q Consensus 13 vG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (197)
+|++|||||||+++|..+.+...+.+|.. +.....+.+++..+.+.+||++|+++|..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999998888888874 45566677888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177 92 ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 92 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 171 (197)
.|++.+ ..|+..+....+++|+++||||+|+.... +..+. ..+++..+. +++++||++|+|++++|
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF 146 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence 999999 78999998877889999999999986421 33333 467777776 89999999999999999
Q ss_pred HHHHHHHcCC
Q 029177 172 DAAIKVVLQP 181 (197)
Q Consensus 172 ~~i~~~~~~~ 181 (197)
.++++.+...
T Consensus 147 ~~l~~~i~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 79
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=1.3e-32 Score=195.15 Aligned_cols=169 Identities=65% Similarity=1.106 Sum_probs=145.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999988888888777677777888888999999999999988888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC-CCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN-HPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
++++.++......|+..+....++.|+++|+||+|+.+....... ......+..+++.+++..++..+++++||++|+|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 999999999877898888887778999999999999875531100 0112345678888999999977999999999999
Q ss_pred HHHHHHHHHH
Q 029177 167 VKTVFDAAIK 176 (197)
Q Consensus 167 i~~~~~~i~~ 176 (197)
++++|+++++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999876
No 80
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=4.4e-33 Score=196.67 Aligned_cols=159 Identities=30% Similarity=0.543 Sum_probs=136.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC-cccccccCcCCCcEEEEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~d 87 (197)
||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+++||+||++. +......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999998888888887555666677888889999999999985 34456678899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 88 LISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
++++++++.+ ..|...+.... .+.|+++|+||+|+...+. +..+++..+++..+. +++++||+++
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~ 148 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED 148 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence 9999999998 77877777653 4799999999999866443 777888899999986 8999999999
Q ss_pred -CCHHHHHHHHHHHHc
Q 029177 165 -QNVKTVFDAAIKVVL 179 (197)
Q Consensus 165 -~~i~~~~~~i~~~~~ 179 (197)
.|++++|..+++.+.
T Consensus 149 ~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 149 YDGVHSVFHELCREVR 164 (165)
T ss_pred chhHHHHHHHHHHHHh
Confidence 599999999998653
No 81
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.2e-32 Score=195.17 Aligned_cols=164 Identities=21% Similarity=0.285 Sum_probs=137.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
.+.+||+++|++|||||||+++|.++.+. ..+.+|....+ ...+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999998 88888875544 35577788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
++|||++++.+++.+ ..|...+... .++|+++|+||+|+.+... ....+..++++.++...++++||+
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence 999999999999988 6777665432 4799999999999965432 333455677888887557999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+++|++++|+.+.+.+++
T Consensus 150 ~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 150 LGDSSNELFTKLATAAQY 167 (169)
T ss_pred cCccHHHHHHHHHHHhhC
Confidence 999999999999998865
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.6e-32 Score=193.39 Aligned_cols=161 Identities=37% Similarity=0.684 Sum_probs=140.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999888777667664 334556777888889999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|++++.+++.+ ..|+..+..+. +++|+++|+||+|+..... +..+.+..+++.++. +++++||++++
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999998 67988887766 6899999999999876443 677888889988886 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029177 166 NVKTVFDAAIKVVLQ 180 (197)
Q Consensus 166 ~i~~~~~~i~~~~~~ 180 (197)
|++++|+++.+.+..
T Consensus 149 ~i~~l~~~i~~~~~~ 163 (164)
T smart00175 149 NVEEAFEELAREILK 163 (164)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987743
No 83
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.5e-32 Score=193.70 Aligned_cols=159 Identities=32% Similarity=0.549 Sum_probs=135.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCcee-eeeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+||+++|++|||||||++++..+ .+..++.++.. +.+...+.++ +..+.+++||+||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 67788888874 4444445554 56799999999999998888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
+|||+++++++..+ ..|+..+....++.|+++|+||+|+.+... +...++..+....+. +++++||++
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR 148 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999988 789888887767799999999999976543 666667777777776 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029177 164 QQNVKTVFDAAIKVV 178 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~ 178 (197)
+.|++++|+.+.+.+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (164)
T cd04101 149 GVGYEEPFESLARAF 163 (164)
T ss_pred CCChHHHHHHHHHHh
Confidence 999999999999865
No 84
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3.3e-32 Score=193.23 Aligned_cols=163 Identities=33% Similarity=0.592 Sum_probs=139.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988777777764 444566778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 87 SLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
|++++.+++.. ..|...+.... .++|+++|+||+|+..+.. ...++...+++..+..+++++||
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 149 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence 99999999888 67766554433 2799999999999975332 56778888888888669999999
Q ss_pred cCCCCHHHHHHHHHHHHcCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~ 181 (197)
++|.|++++|+++.+.++..
T Consensus 150 ~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 150 KEAINVEQAFETIARKALEQ 169 (172)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988765
No 85
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=2.9e-32 Score=195.08 Aligned_cols=178 Identities=29% Similarity=0.523 Sum_probs=146.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
.||+++|++|+|||||+++|..+.+...+.+++...+...+..++..+.+++||+||++++...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999887778887765556667778888899999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177 88 LISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
+++..+++.+...|...+.... .+.|+++++||+|+...+. +..++...+++.++. +++++||++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 150 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENEN 150 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 9999999999444444444322 5789999999999975432 556667778887785 899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177 167 VKTVFDAAIKVVLQPPKPKKRKRKARPCIFL 197 (197)
Q Consensus 167 i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~ 197 (197)
+.++|.++.+.+......... .-++.|.+|
T Consensus 151 v~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~ 180 (180)
T cd04137 151 VEEAFELLIEEIEKVENPLDP-GQKKKCSIM 180 (180)
T ss_pred HHHHHHHHHHHHHHhcCCCCC-CCCCCceeC
Confidence 999999999998877665543 356678765
No 86
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=4.5e-32 Score=190.98 Aligned_cols=159 Identities=35% Similarity=0.648 Sum_probs=139.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||++++.++.+...+.++... .....+.+++..+.+.+||+||++++...+..+++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999987767777643 44667788888899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|+++++++... ..|+..+.... ++.|+++++||+|+..... ...++...++...+. +++++||++|.
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (163)
T cd01860 82 DITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTGE 149 (163)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999999 78888877665 6799999999999875433 677788888888885 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKVV 178 (197)
Q Consensus 166 ~i~~~~~~i~~~~ 178 (197)
|++++|+++.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd01860 150 NVNELFTEIAKKL 162 (163)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999875
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.7e-32 Score=191.02 Aligned_cols=158 Identities=37% Similarity=0.620 Sum_probs=137.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|++..+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988777777664 555666777888889999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|++++++++.+ ..|+..+.... .+.|+++++||+|+.+... ...++...+++..+. +++++||++++
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH 148 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence 99999999998 77888776554 3699999999999965433 677888888888885 89999999999
Q ss_pred CHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKV 177 (197)
Q Consensus 166 ~i~~~~~~i~~~ 177 (197)
|++++|+++.+.
T Consensus 149 ~v~~l~~~i~~~ 160 (161)
T cd01861 149 NVKELFRKIASA 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 88
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=196.31 Aligned_cols=163 Identities=35% Similarity=0.612 Sum_probs=150.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|.+|||||+|+.+|..+.|.+.|.||+.+.|...+.+++..+.+.++||+|++.|..+...++.++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|+++++.||+.+ ..+.+.+.+.. ..+|+++||||+|+...+. ++.+++..++..+++ +|+++||+.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~ 149 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL 149 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence 999999999999 56666663322 5789999999999987654 999999999999999 699999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029177 164 QQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~ 180 (197)
+.+++++|..+++.+-.
T Consensus 150 ~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRL 166 (196)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998766
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=6.5e-32 Score=198.91 Aligned_cols=160 Identities=24% Similarity=0.414 Sum_probs=134.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcC-CCcEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFLL 84 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 84 (197)
+||+++|++|||||||+++|..+.+. ..+.++.. +.+...+.+++..+.+.+||+||++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 56666654 56677788888889999999999982 23344566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.+++.+ ..|+..+.... .++|+++|+||+|+...+. +..+++.+++...+. +++++||+
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~ 146 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG 146 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence 9999999999998 77888777654 5799999999999976543 777778888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
++.|++++|+++++.+...
T Consensus 147 ~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 147 LQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988543
No 90
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=196.58 Aligned_cols=166 Identities=31% Similarity=0.587 Sum_probs=139.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||+++|.++.+. .+.++.. +.....+.+++..+.+++||+||+++|..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999998774 5556654 333456677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||++++++++.+...|...+.... .+.|+++|+||+|+..... +..++...++...+. +++++||
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SA 159 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSA 159 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 99999999999999666777666443 4689999999999976443 677788888888886 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~ 182 (197)
++++|++++|+++.+.+...+
T Consensus 160 k~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 160 KTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999998875443
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.2e-31 Score=188.31 Aligned_cols=159 Identities=35% Similarity=0.642 Sum_probs=136.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|+|||||+++|+.+.+...+.+++. ......+...+..+.+.+||+||++.+...++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988766666653 444556667777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|++++++++.. ..|+..+.... .++|+++++||+|+..... +..++..++++..+. +++++|+++++
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK 148 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 77888777665 3789999999999975443 666777888888886 79999999999
Q ss_pred CHHHHHHHHHHHH
Q 029177 166 NVKTVFDAAIKVV 178 (197)
Q Consensus 166 ~i~~~~~~i~~~~ 178 (197)
|++++++++.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998865
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=2.5e-31 Score=186.89 Aligned_cols=157 Identities=31% Similarity=0.607 Sum_probs=135.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||+++|.+..+...+.++... .....+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887666676643 33445667788899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|++++++++.+ ..|++.+..+. ++.|+++|+||+|+.... ...++..+++...+. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR 147 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence 99999999998 66888887764 589999999999997432 566788889888876 8999999999
Q ss_pred CCHHHHHHHHHHH
Q 029177 165 QNVKTVFDAAIKV 177 (197)
Q Consensus 165 ~~i~~~~~~i~~~ 177 (197)
+|++++++++.+.
T Consensus 148 ~gi~~~~~~~~~~ 160 (161)
T cd01863 148 DGVQQAFEELVEK 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=2.3e-31 Score=187.39 Aligned_cols=160 Identities=34% Similarity=0.610 Sum_probs=138.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||+||+..+...+..+++.+++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999988888888776667777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
++++.++... ..|...+.... .++|+++|+||+|+.+... ....+...+++.++. +++++||++++
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 9999999998 55555555442 5799999999999976322 566677788888886 89999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029177 166 NVKTVFDAAIKVVL 179 (197)
Q Consensus 166 ~i~~~~~~i~~~~~ 179 (197)
|++++|+++...+.
T Consensus 149 gi~~l~~~l~~~~~ 162 (164)
T cd04139 149 NVEKAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 94
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.9e-31 Score=187.59 Aligned_cols=164 Identities=29% Similarity=0.438 Sum_probs=129.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+++|..+.+...+.++ ...+.....+.+..+.+++||+||++.+...+...+..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999887664433 33334444566777899999999998887777777899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-cEEEEecccCCCC
Q 029177 88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-AVYIECSSKTQQN 166 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 166 (197)
++++.+++.+...|...+....++.|+++|+||+|+.+.... ....++...++..++. .+++++||+++.|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN 151 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence 999999999856788888776678999999999999764320 0112333344444432 3799999999999
Q ss_pred HHHHHHHHHHHHcC
Q 029177 167 VKTVFDAAIKVVLQ 180 (197)
Q Consensus 167 i~~~~~~i~~~~~~ 180 (197)
++++|+.+.+.++.
T Consensus 152 v~~lf~~~~~~~~~ 165 (166)
T cd01893 152 VSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988765
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=1.2e-31 Score=192.44 Aligned_cols=172 Identities=20% Similarity=0.322 Sum_probs=130.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+.+||+++|++|||||||++++..+.+... .++.. ......+.. ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999999887644 45542 333333333 446689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH--c---CCcEE
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL--I---GAAVY 156 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~ 156 (197)
+|||++++.+++.. ..|+..+.... .+.|+++|+||+|+.+. ...++...+... . ...++
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence 99999999998887 56665554432 47999999999998642 333444443321 1 12368
Q ss_pred EEecccCCCCHHHHHHHHHHHHcCCCCcccccCCC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQPPKPKKRKRKA 191 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~k~ 191 (197)
+++||++++|++++|+++.+.+...++..+.++|+
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~~~~ 182 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILKRRKMLRQQKKK 182 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 89999999999999999999997766666555554
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.8e-31 Score=185.22 Aligned_cols=162 Identities=30% Similarity=0.578 Sum_probs=137.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999998887766666653 455556778888889999999999999988888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.+. +..+....+.+.... +++++||+
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~~Sa~ 152 (169)
T cd04114 85 LTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLETSAK 152 (169)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEeeCC
Confidence 99999999999988 67888777655 4799999999999976443 666666777777774 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029177 163 TQQNVKTVFDAAIKVV 178 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~ 178 (197)
+|.|++++|+++.+.+
T Consensus 153 ~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 153 ESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 97
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=189.36 Aligned_cols=164 Identities=36% Similarity=0.597 Sum_probs=145.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEEC---------CeEEEEEEEecCCCcCcccccccC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVD---------GSTVNLGLWDTAGQEDYNRLRPLS 75 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~~~~ 75 (197)
..+|.+.+|++||||||++.++..++|...-..|.. +...+.+..+ +..+.+++|||+||++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 467899999999999999999999999888777774 4445555542 356899999999999999999999
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 153 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
++.|=+++++||+++..||.+. ..|+.++..+. ++..+|+++||+|+.+.+. ++.+++.+++++++.
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl 156 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL 156 (219)
T ss_pred HHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC
Confidence 9999999999999999999999 88999988765 7888999999999988776 999999999999998
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
|||++||-+|.|+++..+.+...+++.
T Consensus 157 -PYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 157 -PYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred -CeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 999999999999999998888877644
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.98 E-value=2.8e-31 Score=187.93 Aligned_cols=156 Identities=16% Similarity=0.209 Sum_probs=120.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|..+.+. .+.+|....+. .+.. ..+.+++||+||++.++..+..+++++|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34689999999999999999999987764 45565543322 2333 34889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH---c-CCcEEEEe
Q 029177 85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL---I-GAAVYIEC 159 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 159 (197)
|||++++.+++.....|.+.+... .++.|+++|+||+|+.+. +..+++.++... . ...+++++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~ 150 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPS 150 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEe
Confidence 999999999998855455555443 367999999999998642 445555555421 1 12368999
Q ss_pred cccCCCCHHHHHHHHHH
Q 029177 160 SSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~ 176 (197)
||++|+|++++|++|.+
T Consensus 151 SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 151 CATSGDGLYEGLTWLSS 167 (168)
T ss_pred eCCCCCChHHHHHHHhc
Confidence 99999999999999864
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.98 E-value=7.5e-31 Score=183.94 Aligned_cols=157 Identities=37% Similarity=0.667 Sum_probs=136.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
||+++|++|||||||++++++..+...+.+++.+.+......++..+.+++||+||+..+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888887766666777787788999999999999888888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177 89 ISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
++++++... ..|...+.... .+.|+++++||+|+..... ...+++.+++..++. +++++||++++|
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 148 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN 148 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence 999999998 55655555544 4899999999999976443 677888899888885 899999999999
Q ss_pred HHHHHHHHHHH
Q 029177 167 VKTVFDAAIKV 177 (197)
Q Consensus 167 i~~~~~~i~~~ 177 (197)
++++|++|.+.
T Consensus 149 i~~l~~~l~~~ 159 (160)
T cd00876 149 IDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=8.6e-31 Score=187.50 Aligned_cols=157 Identities=15% Similarity=0.230 Sum_probs=120.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||++++..+.+. .+.||....+. .+..+ .+.+++||+||++.++.+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34589999999999999999999987775 45566543332 23333 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-------cEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-------AVY 156 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 156 (197)
|||+++++++......+...+... .+++|++|++||+|+.+. ...++ +....+. ..+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~---~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAE---ITDKLGLHSLRQRHWYI 155 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHH---HHHHhCccccCCCceEE
Confidence 999999999998844444444332 268999999999999653 22233 3333322 245
Q ss_pred EEecccCCCCHHHHHHHHHHHHcC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+++||++|+|++++|++|.+.+.+
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999999988754
No 101
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.6e-30 Score=181.67 Aligned_cols=156 Identities=38% Similarity=0.734 Sum_probs=135.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|||||||++++.+..+...+.++.. ......+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988877666664 444566677777899999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
|++++++++.+ ..|+..+.... ++.|+++++||+|+..... ...++...++...+. +++++||+++.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~ 148 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE 148 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 99999999998 67888887776 6799999999999973332 677888888888776 89999999999
Q ss_pred CHHHHHHHHH
Q 029177 166 NVKTVFDAAI 175 (197)
Q Consensus 166 ~i~~~~~~i~ 175 (197)
|++++++++.
T Consensus 149 ~i~~~~~~i~ 158 (159)
T cd00154 149 NVEELFQSLA 158 (159)
T ss_pred CHHHHHHHHh
Confidence 9999999986
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.5e-30 Score=187.80 Aligned_cols=160 Identities=26% Similarity=0.430 Sum_probs=132.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
||+++|++|||||||+++|.++.+...+.++........+.+.+..+.+++||+||+..|..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999887777777555556677888888999999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-HcCCcEEEEecccCCC
Q 029177 89 ISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-LIGAAVYIECSSKTQQ 165 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 165 (197)
+++.+++.+ ..|...+.... .++|+++|+||+|+..... .+..++..+... ..+. +++++||++|.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 149 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE 149 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence 999999998 77777666554 4799999999999865211 244444444443 3343 79999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029177 166 NVKTVFDAAIKVVL 179 (197)
Q Consensus 166 ~i~~~~~~i~~~~~ 179 (197)
|++++|+++++.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (198)
T cd04147 150 NVLEVFKELLRQAN 163 (198)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998765
No 103
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-31 Score=174.04 Aligned_cols=164 Identities=30% Similarity=0.574 Sum_probs=147.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...||-+++|+-|+|||+|+.+|...+|..+.+.++.. +-...+.+.+..+.+++||++|+++|+.....+++++.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 35789999999999999999999999998888888754 44566788999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++.++++..+ ..|+...+... |+..+++++||.|+...+. ++.+++.+|+.+.|. .++++||+
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak 156 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK 156 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence 99999999999999 78887776654 7888999999999987766 999999999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+++++.|.+..+.++.
T Consensus 157 tg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred ccCcHHHHHHHHHHHHHH
Confidence 999999999887776643
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3.3e-30 Score=183.63 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=118.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|..+.+. .+.||....+. .+... .+.+++||+||++.+...+..+++++|++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34689999999999999999999887774 45666543322 23333 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEEe
Q 029177 85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIEC 159 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 159 (197)
|||++++++++.....|...+... .++.|++||+||+|+.+. ...++..+.... .....++++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA------------MKAAEITEKLGLHSIRDRNWYIQPT 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC------------CCHHHHHHHhCccccCCCcEEEEEe
Confidence 999999999998844444444433 257999999999999653 122222221111 112246789
Q ss_pred cccCCCCHHHHHHHHHHHHc
Q 029177 160 SSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~ 179 (197)
||++|+|++++|++|.+.+.
T Consensus 155 Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 155 CATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred eCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999987653
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3.6e-30 Score=182.47 Aligned_cols=156 Identities=17% Similarity=0.269 Sum_probs=122.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
||+++|++|||||||+++|.++.+. .+.+|....+. .+... .+.+++||+||+..+...+..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE-TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE-EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 6899999999999999999998765 35666533332 23333 47889999999999998999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-----CcEEEEecc
Q 029177 89 ISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-----AAVYIECSS 161 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa 161 (197)
+++++++.. ..|+..+... ..+.|+++|+||+|+.+. +..+++.+++...+ ...++++||
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 999999998 5555554432 256899999999999642 55566666654322 236789999
Q ss_pred cCCCCHHHHHHHHHHHHcCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~ 181 (197)
++|.|++++|+++.+.+...
T Consensus 144 ~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 144 RSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999876543
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=3.9e-31 Score=186.51 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=122.2
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 89 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 89 (197)
|+++|++|||||||+++|.++.+...+.||..... ..++...+.+.+||+||+++++..+..+++++|++++|||++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 79999999999999999999888777777764322 234445588999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccH----HHHHHHHHHcCCcEEEEecccC--
Q 029177 90 SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITT----AQGEELKKLIGAAVYIECSSKT-- 163 (197)
Q Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~-- 163 (197)
++.++... ..|+..+....+++|+++|+||+|+..... +.. .++..++++.+. +++++||++
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 146 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDG 146 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCC
Confidence 99999988 566666654447899999999999865431 211 234556666665 789988888
Q ss_pred ----CCCHHHHHHHHHH
Q 029177 164 ----QQNVKTVFDAAIK 176 (197)
Q Consensus 164 ----~~~i~~~~~~i~~ 176 (197)
++|++++|+.++.
T Consensus 147 s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 147 SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 9999999998864
No 107
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.7e-32 Score=178.59 Aligned_cols=159 Identities=34% Similarity=0.620 Sum_probs=140.6
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCC-CCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 11 VTVGDGAVGKTCMLISYTSNTFPTD-YVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 11 ~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
+++|++++|||+|+-||..+.|... -.+|.. +...+-+..++..+.+|+|||+||++|++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 4789999999999999998887543 334443 44456677899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177 89 ISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 167 (197)
.++.||++. +.|+..+.++. ..+.+.+++||+|+...+. +..+++..++..|+. |+.++||++|.|+
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence 999999999 89999999887 5788899999999987665 888999999999998 9999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 029177 168 KTVFDAAIKVVLQP 181 (197)
Q Consensus 168 ~~~~~~i~~~~~~~ 181 (197)
+..|..|...+.+.
T Consensus 149 d~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 149 DLAFLAIAEELKKL 162 (192)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999877544
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=3.9e-30 Score=180.59 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=115.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|.+|||||||++++..+.+. .+.||....+ ..+... .+.+++||+||++.+...+..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999888775 4666654332 223333 4889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH-HHHHHH---HcCCcEEEEeccc
Q 029177 88 LISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ-GEELKK---LIGAAVYIECSSK 162 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~Sa~ 162 (197)
++++.+++.....|...+... ..+.|+++++||+|+.+. ...++ ...+.. ......++++||+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~Sak 144 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------------MSAAEVTDKLGLHSLRNRNWYIQATCAT 144 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCCEEEEEeeCC
Confidence 999999999844454444432 257899999999999652 22222 222211 0112357799999
Q ss_pred CCCCHHHHHHHHHH
Q 029177 163 TQQNVKTVFDAAIK 176 (197)
Q Consensus 163 ~~~~i~~~~~~i~~ 176 (197)
+|+|++++|++|.+
T Consensus 145 ~g~gv~~~~~~l~~ 158 (159)
T cd04150 145 SGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999864
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.8e-29 Score=185.48 Aligned_cols=167 Identities=26% Similarity=0.481 Sum_probs=139.6
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 80 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 80 (197)
+.....+||+++|++|||||||++++..+.+...+.++.. +.....+..++..+.+++||++|++++...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 4556679999999999999999999999888888888874 333445556788899999999999999888888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 81 VFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
++++|||++++.++..+ ..|...+....+++|+++++||+|+.+.. ...+ ...+++..+. .++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~-~~~~~~~~~~-~~~e~S 149 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKAR-QITFHRKKNL-QYYDIS 149 (215)
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCHH-HHHHHHHcCC-EEEEEe
Confidence 99999999999999999 78888887766789999999999986422 2223 2456667775 899999
Q ss_pred ccCCCCHHHHHHHHHHHHcCCC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~~~ 182 (197)
|++|.|+++.|.++++.+...+
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999887543
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4.6e-30 Score=183.94 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=119.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|++|||||||++++..+.+.. +.+|....+. .+... .+.+++||+||++.++..+..+++++|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 35899999999999999999998887754 5566543332 33343 47899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEEec
Q 029177 86 FSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIECS 160 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S 160 (197)
||++++++++.....+...+... ..+.|+++|+||+|+.+. ...++....... .....++++|
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~~~~~~S 159 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNWYIQGCC 159 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcEEEEeee
Confidence 99999999999854454444432 257899999999998652 222222111111 0112567999
Q ss_pred ccCCCCHHHHHHHHHHHHcC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~ 180 (197)
|++|+|++++|+++.+.+.+
T Consensus 160 a~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=3.9e-29 Score=177.84 Aligned_cols=155 Identities=18% Similarity=0.262 Sum_probs=118.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
...+||+++|++|||||||+++|.+..+ ..+.++.. .....+.+++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG-FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc-cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4568999999999999999999998754 34445543 2233444554 788999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIE 158 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 158 (197)
|||++++.++... ..|+..+... ..+.|+++|+||+|+.+. ...++..++... ....++++
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHWRIQP 154 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCceEEEe
Confidence 9999999999887 4555544322 268999999999999653 233444444432 12348999
Q ss_pred ecccCCCCHHHHHHHHHH
Q 029177 159 CSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~ 176 (197)
+||++|+|++++|+++++
T Consensus 155 ~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 155 CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCCcCHHHHHHHHhc
Confidence 999999999999999864
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1e-28 Score=175.81 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=117.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|+|||||++++..+.+.. +.++....+ ..+..++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 456899999999999999999999887754 455554333 2344444 788999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH-HHHH----HHcCCcEEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG-EELK----KLIGAAVYIE 158 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~ 158 (197)
|+|+++++++......+...+... ..+.|+++++||+|+.+. ...++. ..+. +..+ .++++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~-~~~~~ 155 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHT-WHIQG 155 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCc-eEEEe
Confidence 999999999888744444444332 257999999999998652 222222 2221 1223 37899
Q ss_pred ecccCCCCHHHHHHHHHH
Q 029177 159 CSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~ 176 (197)
+||++|+|++++|++|.+
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 999999999999999865
No 113
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.9e-28 Score=177.39 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=118.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEEC-----CeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 81 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 81 (197)
+||+++|++|||||||+++|..+.+...+.+|.... ....+.++ +..+.+++||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888887533 33444443 567899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhh--------------------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccH
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHY--------------------APTVPIVLVGTKQDLREDKQYLINHPGATPITT 141 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 141 (197)
+++|||+++++|++.+ ..|+..+... .+++|+++||||+|+.+.+. +..
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~----------~~~ 149 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE----------SSG 149 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc----------cch
Confidence 9999999999999999 7898887653 14689999999999976432 332
Q ss_pred ----HHHHHHHHHcCCcEEEEecccCC
Q 029177 142 ----AQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 142 ----~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
.....++++.++ +.++.++.++
T Consensus 150 ~~~~~~~~~ia~~~~~-~~i~~~c~~~ 175 (202)
T cd04102 150 NLVLTARGFVAEQGNA-EEINLNCTNG 175 (202)
T ss_pred HHHhhHhhhHHHhcCC-ceEEEecCCc
Confidence 235567888998 7888787753
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=4.2e-29 Score=176.68 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=117.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
+|+++|++|||||||+++|.++ +...+.+|.... ...+..++ +.+++||+||++.++..+..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 666667776433 23444444 7889999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-cEEEEecccCC-
Q 029177 89 ISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-AVYIECSSKTQ- 164 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~- 164 (197)
+++.++..+ ..|+..+.... .+.|+++|+||+|+.+..... ..........++.+.+. .+++++||++|
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------DVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------HHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 999999988 66666665432 579999999999997643100 00111111233333332 36778999998
Q ss_pred -----CCHHHHHHHHHH
Q 029177 165 -----QNVKTVFDAAIK 176 (197)
Q Consensus 165 -----~~i~~~~~~i~~ 176 (197)
.|+++.|+||..
T Consensus 150 ~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCccccCHHHHHHHHhc
Confidence 899999999975
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.6e-28 Score=172.64 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=113.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+|+++|++|||||||+++|.+..+ ...+.++..... ..+.. ..+.+++||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV-ESFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce-EEEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 589999999999999999998753 445566653221 12222 34788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH---HH-HcCCcEEEEe
Q 029177 88 LISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL---KK-LIGAAVYIEC 159 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 159 (197)
++++.++... ..|+..+.... .++|+++|+||+|+.+.. ..++..+. .. .....+++++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~ 144 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFAS 144 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEe
Confidence 9999998887 55655554321 479999999999996531 12222221 11 1112358999
Q ss_pred cccCCCCHHHHHHHHHH
Q 029177 160 SSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~ 176 (197)
||++|+|++++|++|.+
T Consensus 145 Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 145 NALTGEGLDEGVQWLQA 161 (162)
T ss_pred eCCCCCchHHHHHHHhc
Confidence 99999999999999864
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=3.9e-28 Score=175.14 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=120.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
..+..||+++|++|||||||++++.++.+. .+.++... ....+.+++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~-~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP-TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc-ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 345789999999999999999999987763 45555432 233455565 67889999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc----------
Q 029177 84 LAFSLISKASYENISKKWIPELRH-YA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI---------- 151 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 151 (197)
+|+|+++.+++... ..|+..+.. .. .+.|+++++||+|+... +..++..++....
T Consensus 92 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 92 FLVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred EEEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCcccccccccccc
Confidence 99999999998877 444444433 22 57999999999998642 4555555555421
Q ss_pred -----CCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 152 -----GAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 152 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
...+++++||++|+|++++|+++.+.
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 22368999999999999999999875
No 117
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.4e-27 Score=169.91 Aligned_cols=160 Identities=21% Similarity=0.332 Sum_probs=124.0
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
...+.+||+++|++||||||+++++..+.+. ...||.... ...+..++ +.+.+||.+|+..++..|..+++++|++
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~-~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN-IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE-EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc-cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 4477899999999999999999999876543 234443222 33455666 7788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH--H---cCCcEE
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK--L---IGAAVY 156 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~ 156 (197)
|||+|.++++.+......+...+.... .+.|++|++||+|+.+. ...++...... . ...+.+
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v 153 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSV 153 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEE
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEE
Confidence 999999999999888555555555433 68999999999998763 34444443322 1 123468
Q ss_pred EEecccCCCCHHHHHHHHHHHH
Q 029177 157 IECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+.+||.+|+|+.+.++||.+.+
T Consensus 154 ~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 154 FSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHhcC
Confidence 8999999999999999999864
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=8.2e-28 Score=168.56 Aligned_cols=151 Identities=16% Similarity=0.206 Sum_probs=111.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
||+++|++++|||||++++..+.+. .+.++....+ ..+... .+.+++||+||++.+...+..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNV-ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCe-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999887764 3445543222 223333 47889999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-HHH----HHcCCcEEEEeccc
Q 029177 89 ISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-ELK----KLIGAAVYIECSSK 162 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~ 162 (197)
+++.++......|...+... ..+.|+++|+||+|+.+.. ...+.. .+. ...+ .+++++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~ 143 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRT-WSIFKTSAI 143 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCc-EEEEEeecc
Confidence 99988877644454444432 2579999999999996531 112221 111 1112 369999999
Q ss_pred CCCCHHHHHHHHHH
Q 029177 163 TQQNVKTVFDAAIK 176 (197)
Q Consensus 163 ~~~~i~~~~~~i~~ 176 (197)
+|.|++++|+++.+
T Consensus 144 ~~~gi~~l~~~l~~ 157 (158)
T cd04151 144 KGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
No 119
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=181.12 Aligned_cols=147 Identities=18% Similarity=0.310 Sum_probs=119.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEEC-------------CeEEEEEEEecCCCcCccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVD-------------GSTVNLGLWDTAGQEDYNR 70 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~ 70 (197)
...+||+++|+.|||||||+++|..+.+...+.+|.... ....+.++ +..+.++|||++|++.|+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 457999999999999999999999999988888887543 34555553 2568899999999999999
Q ss_pred ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCCCcccchhhhcCCCCCC
Q 029177 71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-------------PTVPIVLVGTKQDLREDKQYLINHPGAT 137 (197)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~ 137 (197)
++..+++++|++|+|||++++.+++.+ ..|+..+.... .++|++|||||+|+...... ....
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~----r~~s 173 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT----RGSS 173 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc----cccc
Confidence 999999999999999999999999999 88998887652 25899999999999653210 0000
Q ss_pred CccHHHHHHHHHHcCCcEE
Q 029177 138 PITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (197)
.+..+++++|+.+.+..+.
T Consensus 174 ~~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 174 GNLVDAARQWVEKQGLLPS 192 (334)
T ss_pred cccHHHHHHHHHHcCCCcc
Confidence 1367899999999886543
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=1.1e-27 Score=169.24 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=112.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC------CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
+|+++|++|+|||||+++|..... ...+.++....+ ..+.+++ ..+++||+||++.+...+..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999976422 122233332222 2344554 7888999999999998888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc------CCc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI------GAA 154 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 154 (197)
++|+|+++++++... ..|+..+.+.. .++|+++++||+|+... ...++...+.... ...
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence 999999999988887 45554444332 57999999999998653 3333334433221 224
Q ss_pred EEEEecccCCCCHHHHHHHHHH
Q 029177 155 VYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
+++++||++|+|+++++++|..
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHhc
Confidence 8999999999999999999864
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.3e-27 Score=167.80 Aligned_cols=151 Identities=21% Similarity=0.297 Sum_probs=112.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
+|+++|++|||||||+++|.++.+.. +.++....+ ..+... ..+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~-~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV-EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce-EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999988753 345543222 223333 347899999999999888888899999999999999
Q ss_pred CChhhHHHHHHHHHHHH-hhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH------HHHHcCCcEEEEec
Q 029177 89 ISKASYENISKKWIPEL-RHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE------LKKLIGAAVYIECS 160 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~S 160 (197)
+++.++... ..|+..+ .... .+.|+++|+||+|+... ...++... ++...+ .+++++|
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~~S 143 (160)
T cd04156 78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRD-WYVQPCS 143 (160)
T ss_pred CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCc-EEEEecc
Confidence 999998888 4444443 3222 58999999999999642 12222221 122222 3789999
Q ss_pred ccCCCCHHHHHHHHHH
Q 029177 161 SKTQQNVKTVFDAAIK 176 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~ 176 (197)
|++|+|++++|++|.+
T Consensus 144 a~~~~gv~~~~~~i~~ 159 (160)
T cd04156 144 AVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccCCChHHHHHHHhc
Confidence 9999999999999864
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.8e-27 Score=170.80 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=117.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.++|+++|.+|||||||++++.++.+. .+.++.... ...+...+ +.+.+||+||+..++..+..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT-SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 56799999999999999999999987664 333443221 22334444 778899999999998899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-----------Hc
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-----------LI 151 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 151 (197)
|+|+++++++... ..++..+... ..+.|+++|+||+|+... ++.++...... ..
T Consensus 91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~ 157 (184)
T smart00178 91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGV 157 (184)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCC
Confidence 9999999998887 4444443322 257999999999998642 33333332221 11
Q ss_pred CCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 152 GAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
+...++++||++++|++++++|+.+.
T Consensus 158 ~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 158 RPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ceeEEEEeecccCCChHHHHHHHHhh
Confidence 34468999999999999999999864
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=3.6e-27 Score=165.21 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=114.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
||+++|++|||||||++++.++.+ ..+.++.... ...+.+.+ +.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN-VETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc-eEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999874 3444444322 22233443 7889999999999998999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEEeccc
Q 029177 89 ISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIECSSK 162 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 162 (197)
++++++... ..|+..+... ..+.|+++++||+|+.... ..++..+.... ....+++++||+
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 143 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSAV 143 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeCC
Confidence 999999988 4444444332 2589999999999997532 22333333221 223489999999
Q ss_pred CCCCHHHHHHHHHH
Q 029177 163 TQQNVKTVFDAAIK 176 (197)
Q Consensus 163 ~~~~i~~~~~~i~~ 176 (197)
+|.|++++|++|..
T Consensus 144 ~~~gv~~~~~~l~~ 157 (158)
T cd00878 144 TGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCHHHHHHHHhh
Confidence 99999999999875
No 124
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=3.2e-26 Score=162.82 Aligned_cols=143 Identities=29% Similarity=0.504 Sum_probs=123.1
Q ss_pred CCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhh
Q 029177 30 NTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY 108 (197)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 108 (197)
+.|.+.+.+|.+ +.+...+.+++..+.+.||||||++.+...+..+++++|++++|||++++.+|+.+ ..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 457778888885 55566788899999999999999999999999999999999999999999999999 7888877654
Q ss_pred C-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177 109 A-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 109 ~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
. ++.|+++|+||+|+...+. +..+++..++..++. .++++||++|+|++++|+++.+.+...+..
T Consensus 82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 4 5789999999999965433 778888899998887 799999999999999999999988664443
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=3.4e-26 Score=161.80 Aligned_cols=154 Identities=21% Similarity=0.203 Sum_probs=106.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc---------cCcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------LSYRG 78 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---------~~~~~ 78 (197)
+|+++|++|||||||+++|.+..+... +..++.......... ..+.+++|||||+........ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 689999999999999999999876432 222222222222222 347889999999853211100 01123
Q ss_pred CcEEEEEEECCChhhH--HHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 79 ADVFLLAFSLISKASY--ENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+|++++|+|++++.++ +.. ..|+..+.....+.|+++|+||+|+..... +. ...++....+ .++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~-~~~ 145 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEG-EEV 145 (168)
T ss_pred cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhcc-Cce
Confidence 6899999999988653 444 567777766556899999999999965432 22 1344444444 489
Q ss_pred EEecccCCCCHHHHHHHHHHHH
Q 029177 157 IECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+++||++|+|++++|+++.+.+
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 146 LKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred EEEEecccCCHHHHHHHHHHHh
Confidence 9999999999999999998875
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=1.8e-26 Score=164.80 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=112.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCce-------eeeeeEE--EEE---CCeEEEEEEEecCCCcCcc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV-------FDNFSAN--VVV---DGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~-------~~~~~~~~~-------~~~~~~~--~~~---~~~~~~~~~~D~~g~~~~~ 69 (197)
+|+++|++++|||||+++|.+.. +...+.++. .+..... +.+ ++..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998731 111222211 0111111 222 5567889999999999999
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK 149 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
..+..+++.+|++++|||+++..+.... ..|..... .++|+++|+||+|+.+.. ..+...++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~ 145 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQIED 145 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence 8888899999999999999998776665 44433322 368999999999986421 1223345566
Q ss_pred HcCCc--EEEEecccCCCCHHHHHHHHHHHHc
Q 029177 150 LIGAA--VYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 150 ~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.++.. +++++||++|+|++++|+++.+.+.
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 65542 4899999999999999999998763
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=5.4e-26 Score=158.74 Aligned_cols=151 Identities=24% Similarity=0.326 Sum_probs=114.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 89 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 89 (197)
|+++|++|||||||++++.+..+...+.++....+. .+...+ +.+.+||+||++.+...+..+++.+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 789999999999999999999988888777643332 233343 78999999999999988999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhh-h-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----HcCCcEEEEecccC
Q 029177 90 SKASYENISKKWIPELRH-Y-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK----LIGAAVYIECSSKT 163 (197)
Q Consensus 90 ~~~s~~~~~~~~~~~~~~-~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 163 (197)
++.++... ..|+..+.. . ..+.|+++|+||+|+.+... ..+...... .....+++++|+++
T Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 145 (159)
T cd04159 79 DRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDREVSCYSISCKE 145 (159)
T ss_pred CHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCceEEEEEEecc
Confidence 99988877 344444332 2 25789999999999865321 111111110 11224789999999
Q ss_pred CCCHHHHHHHHHH
Q 029177 164 QQNVKTVFDAAIK 176 (197)
Q Consensus 164 ~~~i~~~~~~i~~ 176 (197)
+.|++++++++.+
T Consensus 146 ~~gi~~l~~~l~~ 158 (159)
T cd04159 146 KTNIDIVLDWLIK 158 (159)
T ss_pred CCChHHHHHHHhh
Confidence 9999999999975
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=7.1e-26 Score=152.47 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=124.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+++.++|+++|..|+||||++++|.+.. ++...||.... -.++..++ +.+++||.+||..++..|+.|+...|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~-Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQ-IKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcccee-eEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 4568999999999999999999998875 33444443222 33444555 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccH-HHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITT-AQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|+|.+|+..+++....+...+.... .+.|+++++||.|+...-. .+.+.+ -+...+++...+ +.+.||+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~-------~~~i~~~~~L~~l~ks~~~-~l~~cs~ 160 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS-------LEEISKALDLEELAKSHHW-RLVKCSA 160 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC-------HHHHHHhhCHHHhccccCc-eEEEEec
Confidence 99999999988887555544444332 5789999999999984321 000111 123344455555 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcC
Q 029177 162 KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~ 180 (197)
.+|+++.+.++|+...+..
T Consensus 161 ~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 129
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=2e-28 Score=167.23 Aligned_cols=163 Identities=34% Similarity=0.509 Sum_probs=149.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..+|++++|..+|||||++++++.+-|...|..++ .+.....+.+.++.+.+.+||++|+++|..+...++++|.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 57999999999999999999999999999999888 45556667777777888899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
||+-+|+.||+.. ..|...+......+|.++|-||+|+.++.. +..+++..+++.++. .++.+|+++.
T Consensus 99 VFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvked 166 (246)
T KOG4252|consen 99 VFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKED 166 (246)
T ss_pred EEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhhh
Confidence 9999999999999 889999888888999999999999999886 889999999999997 8999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029177 165 QNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~~ 180 (197)
.|+.++|..++..+.+
T Consensus 167 ~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999886643
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.2e-25 Score=159.74 Aligned_cols=153 Identities=22% Similarity=0.315 Sum_probs=112.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.++|+++|++|||||||++++.+..+. .+.++.... ...+..++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999987653 233443211 22344555 678899999998888888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-------CcEE
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-------AAVY 156 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 156 (197)
|+|+++..++......+...+.... .++|+++++||+|+.+.. ..+ ++.+..+ .+++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~---~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAE---EIAEALNLHDLRDRTWHI 152 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHH---HHHHHcCCcccCCCeEEE
Confidence 9999999988887334434433322 479999999999986531 111 2222222 2257
Q ss_pred EEecccCCCCHHHHHHHHHH
Q 029177 157 IECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~ 176 (197)
+++||++|+|++++|+||.+
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 89999999999999999975
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=2.7e-25 Score=163.74 Aligned_cols=178 Identities=32% Similarity=0.513 Sum_probs=137.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
.+||+++|++|||||||+++|.++.+...+.++....+ .......+..+.+.+|||+|+++++..+..++.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999988988875444 34444454578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcC--CCCCCCccHHHHHHHHHHc--CCcEEEEec
Q 029177 86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLIN--HPGATPITTAQGEELKKLI--GAAVYIECS 160 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~S 160 (197)
||.++..++......|...+.... .+.|+++++||+|+......... ....+....+......... ....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 999997777777799999998887 47999999999999876431100 0000112222222222222 233489999
Q ss_pred cc--CCCCHHHHHHHHHHHHcCCCCc
Q 029177 161 SK--TQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 161 a~--~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
++ ++.+++++|..+...+......
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 99 9999999999999988655433
No 132
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=154.80 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=126.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
..+..+|+++|..++||||++++|..+..... .||.+...+ .+.+. .+.|++||.+||+.++..|.+++++.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 34678999999999999999999998876544 777654433 34444 489999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH---HHc-CCcEEEE
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK---KLI-GAAVYIE 158 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~ 158 (197)
||+|.+|++.+.++.+.+...+.... .+.|+++++||.|+.+. .+..+..+.. .-. ....+-.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w~iq~ 157 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNWHIQS 157 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCcEEee
Confidence 99999999999999666666655544 68999999999999875 3332222221 111 2224557
Q ss_pred ecccCCCCHHHHHHHHHHHHcCC
Q 029177 159 CSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
++|.+|+|+.|.++|+.+.+.+.
T Consensus 158 ~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 158 TCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccccccccHHHHHHHHHHHHhcc
Confidence 99999999999999999987543
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=5.8e-25 Score=153.14 Aligned_cols=156 Identities=36% Similarity=0.506 Sum_probs=122.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+||+++|++|+|||||++++....+...+.++.. ......+..++..+.+.+||+||+.++...+...++.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 7999999999999999999999887666666654 333444667777788999999999999888888889999999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 87 SLISK-ASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 87 d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|.... .++......|...+..... +.|+++++||+|+.... .. ..........+..+++++||.++
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~-~~~~~~~~~~~~~~~~~~sa~~~ 149 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LK-THVAFLFAKLNGEPIIPLSAETG 149 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hh-HHHHHHHhhccCCceEEeecCCC
Confidence 99888 6666664466666665554 88999999999996532 22 23333444445558999999999
Q ss_pred CCHHHHHHHHH
Q 029177 165 QNVKTVFDAAI 175 (197)
Q Consensus 165 ~~i~~~~~~i~ 175 (197)
.|+.++|+++.
T Consensus 150 ~gv~~~~~~l~ 160 (161)
T TIGR00231 150 KNIDSAFKIVE 160 (161)
T ss_pred CCHHHHHHHhh
Confidence 99999999863
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.3e-25 Score=157.75 Aligned_cols=156 Identities=20% Similarity=0.159 Sum_probs=108.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc----ccccccC---cCCCc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 80 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~~---~~~~~ 80 (197)
+|+++|.+|||||||+++|.+..... .+..++.......+...+. ..+++|||||+... +.....+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 58999999999999999999754321 2222222222222333332 47889999997422 1222222 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 81 VFLLAFSLISK-ASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++++|+|++++ ++++.. ..|.+.+.... .+.|+++|+||+|+.+... ..+....+.......++
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGKPV 148 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCCCE
Confidence 99999999999 788887 77877776654 3689999999999966432 22334445555323479
Q ss_pred EEecccCCCCHHHHHHHHHHH
Q 029177 157 IECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
+++||+++.|++++|+++.+.
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 149 FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 999999999999999999875
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=3.8e-26 Score=157.36 Aligned_cols=135 Identities=25% Similarity=0.262 Sum_probs=100.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc-----CcccccccCcCCCcEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFL 83 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i 83 (197)
||+++|++|||||||+++|.+..+ .+.++.. +.... .+||+||+. .+..... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--cccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 899999999999999999998764 2333321 11222 589999973 2333333 478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
+|||++++.++... .|...+ ..|+++|+||+|+.+.. ...+++.++++..+..+++++||++
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence 99999999987653 454432 24999999999986421 4456677788777766899999999
Q ss_pred CCCHHHHHHHHH
Q 029177 164 QQNVKTVFDAAI 175 (197)
Q Consensus 164 ~~~i~~~~~~i~ 175 (197)
++|++++|+++.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=5.4e-25 Score=170.28 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=117.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----cc---cccCcCCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RL---RPLSYRGA 79 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~---~~~~~~~~ 79 (197)
-.|++||.||||||||+++++.... ...|..|+.......+.+.+ ...+++||+||...-. .+ +...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4699999999999999999997542 23455555444444444532 2467899999974311 12 22345679
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 80 DVFLLAFSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+++++|+|+++.++++.. ..|...+..+. .+.|+++|+||+|+.+... ...+....+....+. ++
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i 305 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV 305 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence 999999999998888888 78888887764 3789999999999975432 333344455555554 79
Q ss_pred EEecccCCCCHHHHHHHHHHHHcC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+++||++++|++++++++.+.+..
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988754
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.3e-24 Score=152.80 Aligned_cols=153 Identities=20% Similarity=0.160 Sum_probs=102.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC---CCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.|+++|.+|||||||+++|.+. .+..++.+++ .+.....+.+.+ ...+++|||||++++.......+.++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999999863 3333322222 222222344442 3578899999999887666667889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc--CCcEEEEe
Q 029177 85 AFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI--GAAVYIEC 159 (197)
Q Consensus 85 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 159 (197)
|+|+++ +++.+.+ ..+... ...|+++++||+|+.+... .....++..+..... ...+++++
T Consensus 81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 999987 3333332 122211 2249999999999965321 001223333444332 23489999
Q ss_pred cccCCCCHHHHHHHHHH
Q 029177 160 SSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~ 176 (197)
||++++|++++++.+..
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998764
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=2e-24 Score=157.53 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=107.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSY 76 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 76 (197)
..++|+++|++|||||||++++.+..+... ...++.......+.+++. ..+.+||+||....... ....+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999999764322 222222333333444443 37889999997332110 00125
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+... . ..+..... .+
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~-~~ 181 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGR-PD 181 (204)
T ss_pred hcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCC-Cc
Confidence 689999999999999888776 56666665543 4789999999999965432 1 13333334 47
Q ss_pred EEEecccCCCCHHHHHHHHHHH
Q 029177 156 YIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
++++||+++.|++++++++.+.
T Consensus 182 ~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 182 AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred eEEEEcCCCCCHHHHHHHHHhh
Confidence 9999999999999999999875
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=6.3e-24 Score=150.05 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=107.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
.|+++|++|+|||||+++|..+.+...+.++..... ...+... .....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999999877655443332222 2223332 13468889999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----Hc-CCcEEEEecc
Q 029177 87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK----LI-GAAVYIECSS 161 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~Sa 161 (197)
|+++....... . .+..+.. .+.|+++|+||+|+...... ...+....+.. .. ...+++++||
T Consensus 82 d~~~~~~~~~~-~-~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQTI-E-AIKLAKA--ANVPFIVALNKIDKPNANPE---------RVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHHHH-H-HHHHHHH--cCCCEEEEEEceecccccHH---------HHHHHHHHhhccccccccCcCcEEEeec
Confidence 99985432222 1 1222332 37899999999998642110 00111111111 11 1247999999
Q ss_pred cCCCCHHHHHHHHHHHHc
Q 029177 162 KTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~ 179 (197)
++++|++++++++.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999988653
No 140
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=1e-23 Score=164.15 Aligned_cols=157 Identities=15% Similarity=0.224 Sum_probs=109.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEecCCCcC-cccccc-------c
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP-------L 74 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~-------~ 74 (197)
.+.++|+++|.+|||||||+|+|.+..+.. ....++.......+..++ ..+.||||||... +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 467899999999999999999999877642 222233333344455566 4678999999843 322221 2
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-C
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-A 153 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 153 (197)
.+..+|++++|+|.++ ++......|+..+... +.|.++|+||+|+... ...+..++....+ .
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~~~ 190 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENHPD 190 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcCCC
Confidence 3678999999999765 3334424456655543 5678899999998542 1234445544443 3
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.+++++||++|.|++++|+++.+.+..
T Consensus 191 ~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 191 SLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred cEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 479999999999999999999987754
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1e-23 Score=145.62 Aligned_cols=153 Identities=38% Similarity=0.668 Sum_probs=116.1
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC
Q 029177 12 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS 90 (197)
Q Consensus 12 vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (197)
++|++|+|||||++++.+... .....++....+............+.+||+||+..+...+...++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999999776 4454455445555556666677899999999998888777788899999999999999
Q ss_pred hhhHHHHHHHH--HHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHH
Q 029177 91 KASYENISKKW--IPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVK 168 (197)
Q Consensus 91 ~~s~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 168 (197)
+.+.... ..| .........+.|+++++||+|+..... ................+++++|+.++.|++
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 149 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELGVPYFETSAKTGENVE 149 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcCCcEEEEecCCCCChH
Confidence 9998888 444 222233336899999999999976432 221211233334444589999999999999
Q ss_pred HHHHHHH
Q 029177 169 TVFDAAI 175 (197)
Q Consensus 169 ~~~~~i~ 175 (197)
++++++.
T Consensus 150 ~~~~~l~ 156 (157)
T cd00882 150 ELFEELA 156 (157)
T ss_pred HHHHHHh
Confidence 9999885
No 142
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=8.3e-24 Score=147.65 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=105.3
Q ss_pred EEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--------ccccCcCCCc
Q 029177 11 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 80 (197)
Q Consensus 11 ~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~ 80 (197)
+++|.+|+|||||+++|.+.. +.....+++.+........++ ..+.+|||||+..+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999864 333444555444444555555 6788999999987544 2334578899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 81 VFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
++++|+|.++..+.... .+...+... +.|+++|+||+|+.+... . .......+..+++++|
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S 139 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS 139 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence 99999999886554443 233444433 689999999999976432 1 2223345554789999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 029177 161 SKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~ 177 (197)
+++++|++++++++++.
T Consensus 140 a~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 140 AEHGRGIGDLLDAILEL 156 (157)
T ss_pred cccCCCHHHHHHHHHhh
Confidence 99999999999999875
No 143
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=1.2e-23 Score=159.46 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=108.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-c-------cccCcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-L-------RPLSYRG 78 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~-------~~~~~~~ 78 (197)
+|+++|.||||||||+|+|.+..+. .....|+..... .+...+. ..+.||||||...... . ....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999997653 233334433322 2323222 4688999999754321 1 2345689
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE 158 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+|++++|+|+++..+.+ ..+...+... +.|+++|+||+|+.+... ..+....++...+..++++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~v~~ 143 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-----------LLPLIDKYAILEDFKDIVP 143 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH-----------HHHHHHHHHhhcCCCceEE
Confidence 99999999999876654 2344444443 789999999999964321 2234455555555557999
Q ss_pred ecccCCCCHHHHHHHHHHHHcCC
Q 029177 159 CSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+||++|+|++++++++.+.+...
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999877443
No 144
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=5e-24 Score=142.44 Aligned_cols=114 Identities=32% Similarity=0.547 Sum_probs=87.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
||+|+|++|||||||+++|.+..+.. .+.+... ...............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999987751 1112222 22223445666666799999999999888877789999999999
Q ss_pred EECCChhhHHHHHHH--HHHHHhhhCCCCCEEEEeeCCC
Q 029177 86 FSLISKASYENISKK--WIPELRHYAPTVPIVLVGTKQD 122 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~p~iiv~nK~D 122 (197)
||++++++++.+... |+..+....+++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999997433 6677776667899999999998
No 145
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.92 E-value=5e-23 Score=137.32 Aligned_cols=168 Identities=24% Similarity=0.325 Sum_probs=140.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECC-eEEEEEEEecCCCcCc-ccccccCcCCCcE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQEDY-NRLRPLSYRGADV 81 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~ 81 (197)
+..||+++|..++|||+|++++..+... .++.+|..+.|...+..+. -.-.+.++||.|...+ ..+-.++++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 5689999999999999999999986543 4566787888887776643 3457889999998887 5567778999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
+++||+..|++||... ..+-..+..+. ..+|+++++||+|+.++.. +..+.++.|++.-.. .++++
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV 155 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV 155 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence 9999999999999987 55555555544 4799999999999987765 899999999999986 89999
Q ss_pred cccCCCCHHHHHHHHHHHHcCCCCcc
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~~~~~ 185 (197)
++.+...+-+.|..+...+..+..+.
T Consensus 156 ta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EeccchhhhhHHHHHHHhccCCcccc
Confidence 99999999999999999887666554
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=156.95 Aligned_cols=156 Identities=18% Similarity=0.129 Sum_probs=102.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCC-----------cCccccccc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-----------EDYNRLRPL 74 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~~~~ 74 (197)
..++|+++|.+|||||||+++|.+..+...+.+++. .....+... .+++|||||. +.++..+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 468999999999999999999998876554444332 112222222 5789999993 444444444
Q ss_pred Cc----CCCcEEEEEEECCChhhHHH---------HHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccH
Q 029177 75 SY----RGADVFLLAFSLISKASYEN---------ISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITT 141 (197)
Q Consensus 75 ~~----~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 141 (197)
++ ..++++++|+|.++...+.. ....+...+.. .++|+++|+||+|+.+.. .
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------~ 147 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------D 147 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------H
Confidence 43 34578888888765322210 00112233332 379999999999996531 2
Q ss_pred HHHHHHHHHcCC--------cEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 142 AQGEELKKLIGA--------AVYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 142 ~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
+...++++.++. .+++++||++| |+++++++|.+.+...+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 148 EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 344556665553 15899999999 99999999999764433
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=3.2e-23 Score=144.93 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=106.6
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc------cccCc--CCCcEE
Q 029177 12 TVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 82 (197)
Q Consensus 12 vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~ 82 (197)
++|.+|+|||||++++.+..+.... ..++.+.....+.+++ ..+.+|||||+..+... +..++ +++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999987644333 3333444445556665 57889999999876643 33444 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
++|+|++++++.. .+...+... +.|+++|+||+|+.+... +. .....++...+. +++++||.
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~ 140 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR 140 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence 9999999865432 233333332 789999999999976432 22 234566777776 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029177 163 TQQNVKTVFDAAIKVV 178 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~ 178 (197)
+++|++++++++.+.+
T Consensus 141 ~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 141 KGEGIDELKDAIAELA 156 (158)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998864
No 148
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=3.1e-23 Score=160.35 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=113.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----ccccc---CcCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPL---SYRG 78 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~ 78 (197)
.-.|+++|.||||||||+++++.... ..+|..|+.......+.+++ ...+++||+||..... .+... .++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 35799999999999999999998643 23444454443333444443 2567899999975322 12222 3457
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177 79 ADVFLLAFSLISK---ASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG 152 (197)
Q Consensus 79 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
++++++|+|+++. ++++.. ..|.+.+..+. .+.|+++|+||+|+.+.. ...+....+++.++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~ 303 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG 303 (329)
T ss_pred hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence 9999999999987 566666 66766666543 478999999999996542 22344556666666
Q ss_pred CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 153 AAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
. +++++||++++|++++++++.+.+
T Consensus 304 ~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 K-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 5 899999999999999999998754
No 149
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=2e-23 Score=162.72 Aligned_cols=152 Identities=22% Similarity=0.237 Sum_probs=109.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCc-C--------cccccccC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-D--------YNRLRPLS 75 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~--------~~~~~~~~ 75 (197)
..++|+++|.+|||||||+|+|.+.... .+...++.+.....+.+.+. ..+.+|||+|.. . |.+.+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999987543 33444555555666666432 478899999972 2 21211 13
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+..... + ..... +..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~~--~~~ 327 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLEE--GYP 327 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHHh--CCC
Confidence 6789999999999999887766 55655555433 4789999999999964221 1 11111 223
Q ss_pred EEEEecccCCCCHHHHHHHHHHH
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
+++.+||++|+|+++++++|.+.
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHhh
Confidence 68999999999999999998764
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=4.2e-23 Score=165.20 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=114.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 75 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 75 (197)
..+||+++|++|||||||+|+|++.. +...+.+++.+.+...+.+++ ..+.+|||||...+.... ..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 35799999999999999999999864 455666666777777777887 556899999987654322 346
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
++++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+... ....+++..+. +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~ 337 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N 337 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence 7899999999999998887663 5555443 37899999999999542 11244555665 7
Q ss_pred EEEecccCCCCHHHHHHHHHHHHcC
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++.+||++ .|++++|+.+.+.+..
T Consensus 338 ~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 338 SSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred eEEEEEec-CCHHHHHHHHHHHHHH
Confidence 89999998 6999999998887754
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2.4e-23 Score=168.81 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=112.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc----------cccc-
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----------NRLR- 72 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~- 72 (197)
..++|+++|.+|||||||+++|++..+ .....+++.+.....+..++. .+.+|||||..+. ....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998754 344455555666666677775 4569999996432 1111
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG 152 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
..+++.+|++++|+|++++.++.+. .++..+.. .+.|+++|+||+|+.+... ......+.........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence 2346899999999999999888876 34444443 3789999999999965321 0011112222112223
Q ss_pred CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 153 AAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
..+++++||++|.|++++|..+.+.+.
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999999988663
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=2.7e-23 Score=147.78 Aligned_cols=152 Identities=24% Similarity=0.269 Sum_probs=104.5
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCc----cccc---ccCcCCCcEE
Q 029177 12 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY----NRLR---PLSYRGADVF 82 (197)
Q Consensus 12 vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~----~~~~---~~~~~~~~~~ 82 (197)
++|++|||||||+++|.+... ...+..++.......+.++ + ..+.+||+||.... ...+ ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998764 2334444433333344455 4 56789999997432 2222 2236789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHhhhC--------CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177 83 LLAFSLISK------ASYENISKKWIPELRHYA--------PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK 148 (197)
Q Consensus 83 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
++|+|+++. .++... ..|...+.... .+.|+++|+||+|+..... ..........
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~ 147 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA 147 (176)
T ss_pred EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence 999999998 466666 55555554332 3789999999999975432 2222122333
Q ss_pred HHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 149 KLIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 149 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
...+ .+++++||+++.|++++++++...
T Consensus 148 ~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 LEEG-AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence 3334 479999999999999999998764
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=8.8e-23 Score=142.37 Aligned_cols=145 Identities=25% Similarity=0.318 Sum_probs=106.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR 77 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 77 (197)
++|+++|++|+|||||++++.+... .....+++.......+..++ ..+.+||+||..++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 5899999999999999999998754 22333443444444455554 57789999998665432 223567
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
.+|++++|+|++++.+.... ..+.. ..+.|+++|+||+|+.+... . ..... ..+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~-~~~~~ 135 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLA-GKPII 135 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccC-CCceE
Confidence 89999999999998887775 33322 34789999999999976432 1 22333 35899
Q ss_pred EecccCCCCHHHHHHHHHHHH
Q 029177 158 ECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
++||+++.|+++++.++.+.+
T Consensus 136 ~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 136 AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 999999999999999998754
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=3.8e-23 Score=149.64 Aligned_cols=147 Identities=14% Similarity=0.065 Sum_probs=99.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Cce-eeeeeEEEEECCeEEEEEEEecCCCcCccccc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~--~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 72 (197)
-+|+++|++++|||||+++|+. +.+...+. .+. .+.......++...+.+++||+||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 55544321 011 11122223334445788999999999999888
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH--
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL-- 150 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 150 (197)
..+++++|++++|||+++... ... ..++..+.. .++|+++|+||+|+.+... ....++..++...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~ 149 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALE--LGLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG 149 (194)
T ss_pred HHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 899999999999999987432 222 233333333 3789999999999964321 0123344444322
Q ss_pred -----cCCcEEEEecccCCCCHH
Q 029177 151 -----IGAAVYIECSSKTQQNVK 168 (197)
Q Consensus 151 -----~~~~~~~~~Sa~~~~~i~ 168 (197)
.+. +++++||++|+|+.
T Consensus 150 ~~~~~~~~-~iv~~Sa~~g~~~~ 171 (194)
T cd01891 150 ATEEQLDF-PVLYASAKNGWASL 171 (194)
T ss_pred CccccCcc-CEEEeehhcccccc
Confidence 244 89999999997763
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3.5e-23 Score=167.93 Aligned_cols=153 Identities=19% Similarity=0.199 Sum_probs=109.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC--------cccccccCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY 76 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 76 (197)
..+|+|+|.+|||||||+|+|.++... .....++.+.....+..++ ..+.+|||||.+. +...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999987542 2333333444555556666 4577999999763 222344567
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+.+|++++|||+++..+... ..+...+.. .+.|+++|+||+|+.... .+....+....+ ..
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~-------------~~~~~~~~~g~~--~~ 176 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE-------------ADAAALWSLGLG--EP 176 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc-------------hhhHHHHhcCCC--Ce
Confidence 89999999999999877654 345555554 379999999999985421 122222333333 45
Q ss_pred EEecccCCCCHHHHHHHHHHHHcC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+++||++|.|++++|+++++.+..
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhccc
Confidence 799999999999999999998755
No 156
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.90 E-value=7.4e-24 Score=140.30 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=127.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
.+.+.++|..++|||||+|....+.+...-.|+.+.... .+....+.+.+||.+||..|+++|..+.+.++++++|+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 468999999999999999999998887777777644332 34555588899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-------CcEEEE
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-------AAVYIE 158 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 158 (197)
|+.+++..+..+..+.+.+.+.. .++|+++.|||.|+.+.-. . .++..+.| .+.+|.
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~------------~---~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS------------K---IALIERMGLSSITDREVCCFS 161 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc------------H---HHHHHHhCccccccceEEEEE
Confidence 99999999888777777777665 7899999999999987422 1 12233332 346899
Q ss_pred ecccCCCCHHHHHHHHHHHH
Q 029177 159 CSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+|+++..|++.+.+|++++.
T Consensus 162 iScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEcCCccHHHHHHHHHHHh
Confidence 99999999999999999865
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=4.2e-23 Score=166.01 Aligned_cols=147 Identities=24% Similarity=0.279 Sum_probs=112.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSY 76 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 76 (197)
.++|+++|.+|+|||||+|+|.+... .....+++.+.....+.+++ ..+.+|||||.+++... ....+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 47999999999999999999998653 44555566666666777777 56789999998765432 22357
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.++|++++|||++++.+++.. ..|.. ..+.|+++|+||+|+..... .. ...+ .++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~-~~~ 347 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENG-KPV 347 (449)
T ss_pred HhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccC-Cce
Confidence 889999999999999887765 44433 34789999999999965322 11 2223 478
Q ss_pred EEecccCCCCHHHHHHHHHHHHcC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+++||++|+|++++++++.+.+..
T Consensus 348 i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 348 IRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999998753
No 158
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2e-22 Score=162.32 Aligned_cols=157 Identities=24% Similarity=0.232 Sum_probs=112.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-----------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 72 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------- 72 (197)
..++|+++|.+|+|||||+++|++... .....+++.+.....+..++. .+.+|||||..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 468999999999999999999998642 344455555555555556664 67799999987654432
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH-HHHHHH-
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG-EELKKL- 150 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 150 (197)
...++.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+.+.. ...++. ..+...
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKL 313 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhc
Confidence 2356889999999999998777664 344444433 78999999999997211 111111 122222
Q ss_pred --cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 151 --IGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 151 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+..+++++||++|.|++++|+++.+.+.
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23458999999999999999999988654
No 159
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=4.6e-23 Score=142.10 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=105.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc------cccCc--CC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RG 78 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~ 78 (197)
++|+++|.||||||||+|+|++... ..++.+++.+.....+.+.+ ..+.++|+||....... ...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999654 34556666666666777777 56779999996544322 12222 57
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE 158 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
.|++++|+|+++.+.-. ++..++.+. ++|+++++||+|+..... +. .....+.+.++. |++.
T Consensus 79 ~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~~-id~~~Ls~~Lg~-pvi~ 140 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERKG----------IE-IDAEKLSERLGV-PVIP 140 (156)
T ss_dssp SSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHTT----------EE-E-HHHHHHHHTS--EEE
T ss_pred CCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHcC----------CE-ECHHHHHHHhCC-CEEE
Confidence 99999999999854322 333444444 799999999999987654 22 235678888887 8999
Q ss_pred ecccCCCCHHHHHHHH
Q 029177 159 CSSKTQQNVKTVFDAA 174 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i 174 (197)
+||++++|++++++.|
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999999875
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=9e-23 Score=146.65 Aligned_cols=157 Identities=18% Similarity=0.101 Sum_probs=110.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----------------eeeeeEEEEECCeEEEEEEEecCCCcCcccc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 71 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 71 (197)
+|+++|.+|+|||||+++|.+.........+. .......+... ...+.+||+||+.++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999876654332211 11111122223 367889999999988888
Q ss_pred cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++++||+|+..... .....+...+..+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~ 146 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI 146 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence 88888999999999999987655443 33444443 4799999999999975221 001223333333332
Q ss_pred -------------CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 152 -------------GAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 152 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
...+++++||++|.|++++++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2358999999999999999999998863
No 161
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=1.3e-22 Score=142.62 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=105.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSY 76 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 76 (197)
..+|+++|++|+|||||++++.+....... ..++..... .........+.+||+||....... ....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR--GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE--EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 478999999999999999999986542221 122211111 122333467889999997654322 23346
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
..+|++++|+|++++.+... ..+...+... +.|+++++||+|+..... ...+....+....+..++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~ 146 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI 146 (168)
T ss_pred HhCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence 78999999999998732222 3344444443 689999999999974322 233344455555555689
Q ss_pred EEecccCCCCHHHHHHHHHHH
Q 029177 157 IECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
+++|++++.|++++++.+.+.
T Consensus 147 ~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 147 FPISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEEEeccCCChHHHHHHHHhh
Confidence 999999999999999999764
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=1.9e-22 Score=166.61 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=114.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCc-------eeeeeeEE--EEE---CCeEEEEEEEecCCCcCc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPT-------VFDNFSAN--VVV---DGSTVNLGLWDTAGQEDY 68 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~-------~~~~~~~~-------~~~~~~~~--~~~---~~~~~~~~~~D~~g~~~~ 68 (197)
=+|+++|+.++|||||+++|+... +...+..+ ..+..... +.+ ++..+.+++|||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998631 11122111 01111112 222 456689999999999999
Q ss_pred ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
...+..+++.+|++++|+|+++..+.... ..|...+. .++|+++|+||+|+.+.. ..+...++.
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el~ 147 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEIE 147 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHHH
Confidence 98888999999999999999998776665 44443333 368999999999986421 122234555
Q ss_pred HHcCCc--EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 149 KLIGAA--VYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 149 ~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
+.++.. .++++||++|.|++++|+++.+.+..+.
T Consensus 148 ~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 148 EVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 555542 4899999999999999999999876554
No 163
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-23 Score=143.39 Aligned_cols=169 Identities=18% Similarity=0.222 Sum_probs=122.1
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC------CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccC
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSN------TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 75 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 75 (197)
|.+...+.++++|..++|||||+.+.... ..+++...++.-....++.+++ ..+.|||..||+..+++|..+
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--APLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--ceeEEEEcCChHHHHHHHHHH
Confidence 55566789999999999999999877652 2222222222222233444554 567799999999999999999
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-- 152 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (197)
+..+|++++++|+++++.++.....+...+.... .+.|+++.+||.|+.+.-. .-..+.....+...+
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~---------~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME---------AAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh---------HHHHHHHhhhhhhcCCc
Confidence 9999999999999999999888555544444333 7999999999999977422 011122222222222
Q ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 153 AAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
..++.++||.+|+|+++...|++..+.+.
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 23688999999999999999999988776
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=4.4e-22 Score=163.87 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=109.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
+..+|+++|++++|||||+++|.+..+...+.+... ......+.+++. ..+.|||||||+.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 457899999999999999999998877655444332 222334444432 267899999999999998888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-------C-CcEE
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-------G-AAVY 156 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~ 156 (197)
|+|+++....... ..+ ..... .++|+++++||+|+.+. ..++..+..... + ..++
T Consensus 165 VVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIF 227 (587)
T ss_pred EEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceE
Confidence 9999875433332 222 22222 37899999999999642 222222322222 2 2479
Q ss_pred EEecccCCCCHHHHHHHHHHH
Q 029177 157 IECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
+++||++|+|++++++++...
T Consensus 228 v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 228 VPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred EEEECCCCCChHHHHHhhhhh
Confidence 999999999999999998753
No 165
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.1e-21 Score=139.01 Aligned_cols=155 Identities=24% Similarity=0.270 Sum_probs=104.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----------cc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 73 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 73 (197)
.++|+++|++|+|||||++++.+.... .....++.......+..++. .+.+||+||..+.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999986532 22223333333444555653 4679999997544211 11
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH-HHHHHHHcC
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ-GEELKKLIG 152 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 152 (197)
..+..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.+... ...+. ...+.+..+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 145 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence 235689999999999998776554 33333333 2689999999999976421 11121 222333332
Q ss_pred ---CcEEEEecccCCCCHHHHHHHHHHH
Q 029177 153 ---AAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 153 ---~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
..+++++||++++|++++++++.+.
T Consensus 146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 3589999999999999999998764
No 166
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.5e-22 Score=131.42 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=123.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.++|+++|..++||||++..|..+.. ....||++.. ...+.+.+ +.|.+||.+|+++.+..|.+++....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFn-vetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFN-VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-ccccccccee-EEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 3578999999999999999999988753 4445555433 23344444 889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH---HHHcC-CcEEEEe
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL---KKLIG-AAVYIEC 159 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~ 159 (197)
|+|..+++..++++..+...+.... .+.|++|.+||.|+.+. ..+.+...+ ..-.+ .+-+..+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A------------~~pqei~d~leLe~~r~~~W~vqp~ 158 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA------------MKPQEIQDKLELERIRDRNWYVQPS 158 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc------------cCHHHHHHHhccccccCCccEeecc
Confidence 9999999999998777766666544 68899999999999875 333333332 22222 1235679
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 029177 160 SSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~ 178 (197)
+|.+|+|+.|.|.|+.+.+
T Consensus 159 ~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 159 CALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccccchhHHHHHHHHHhhc
Confidence 9999999999999998865
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=1.7e-22 Score=141.42 Aligned_cols=142 Identities=18% Similarity=0.151 Sum_probs=99.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc----ccCcCCCcEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFLL 84 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i~ 84 (197)
+|+++|.+|+|||||++++.+.. ... ..+. .+.+... .+||+||.......+ ...+.++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQ------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-ccce------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987643 111 1111 1122222 269999973322111 123679999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-cEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-AVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 163 (197)
|+|+++.+++.. .|+..+ ..+.|+++++||+|+.+ ...+.+.+++.+.+. .|++++||++
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence 999999877633 233332 23679999999999854 334566777777774 4899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029177 164 QQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~ 181 (197)
++|++++|+++.+.+.+.
T Consensus 132 g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQE 149 (158)
T ss_pred ccCHHHHHHHHHHhchhh
Confidence 999999999998876443
No 168
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=9.1e-22 Score=156.01 Aligned_cols=158 Identities=22% Similarity=0.222 Sum_probs=113.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----ccccc---CcCCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPL---SYRGA 79 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~ 79 (197)
..|+++|.||||||||++++++.... .++..|+.......+.+++ ...+.+||+||...-. .+... .++.+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 37999999999999999999986532 3444555443333344441 2578899999974321 12222 24579
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177 80 DVFLLAFSLISK---ASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 153 (197)
Q Consensus 80 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+++++|+|+++. +.++.. ..|...+..+. .+.|++||+||+|+.+. .+....+.+.++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~- 301 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLG- 301 (424)
T ss_pred CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhC-
Confidence 999999999865 566666 66777776654 37899999999998431 234456666666
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
.+++++||++++|++++++++.+.+...+
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 48999999999999999999998775543
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=2.9e-22 Score=161.39 Aligned_cols=152 Identities=21% Similarity=0.236 Sum_probs=110.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC--------cccccccCcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRG 78 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~ 78 (197)
+|+++|.+|||||||+|+|.+... ...+.+++.+.....+..++ ..+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 33444555555555666676 4688999999743 22334456789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE 158 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+|++++|+|..+..+..+. .+...+++. +.|+++|+||+|+..... . ..+ ...++..++++
T Consensus 79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~----------~----~~~-~~~lg~~~~~~ 139 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA----------V----AAE-FYSLGFGEPIP 139 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc----------c----HHH-HHhcCCCCeEE
Confidence 9999999999886554442 344445443 789999999999865321 1 112 34566667999
Q ss_pred ecccCCCCHHHHHHHHHHHHcCC
Q 029177 159 CSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+||++|.|++++++++.+.+...
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcCcc
Confidence 99999999999999999887543
No 170
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=1.1e-21 Score=150.47 Aligned_cols=159 Identities=23% Similarity=0.224 Sum_probs=108.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--------ccccC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLS 75 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~ 75 (197)
+.-.|+++|.+|||||||+|+|++...... ...++..........++ ..+.+|||||...... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 456799999999999999999998765321 22222222222222232 6788999999754321 12234
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+..+|++++|+|+++..+-.. ..+...+.. .+.|+++|+||+|+..... ........+.+..+..+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~ 147 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE 147 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence 678999999999998433222 334444443 2689999999999974322 23345556666666668
Q ss_pred EEEecccCCCCHHHHHHHHHHHHcC
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++.+||++++|++++++++.+.+..
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999999998754
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.7e-22 Score=144.97 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=101.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC----CCCCCC----CCceeeeeeEEEEEC------------CeEEEEEEEecCCCcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN----TFPTDY----VPTVFDNFSANVVVD------------GSTVNLGLWDTAGQED 67 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~----~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~ 67 (197)
++|+++|++|+|||||+++|... .+...+ ..++.......+.+. +..+.+++||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999872 121111 122212111222222 2357889999999976
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE- 146 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~- 146 (197)
+..........+|++++|+|+++....... ..+. .... .+.|+++++||+|+...... ....++..+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~--------~~~~~~~~~~ 148 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEER--------ERKIEKMKKK 148 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHHH--------HHHHHHHHHH
Confidence 543333345678999999999885544332 2221 1121 26799999999998643210 011122222
Q ss_pred HHHH-----cCCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 147 LKKL-----IGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 147 ~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+... ....+++++||++++|++++++++...+.-+
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1111 2234899999999999999999999877543
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=5.3e-22 Score=160.06 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=107.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc--------ccccccCcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSYR 77 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 77 (197)
.+|+++|.+|||||||+++|.+... .....+++.+.....+.+++ ..+.+|||||+... ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 4899999999999999999998653 34444555555556666777 67889999999762 222344578
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
.+|++++|+|+++..+..+. .+...++.. +.|+++|+||+|+.+.. +...++ ..++...++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~ 140 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY 140 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence 99999999999886554332 223334433 78999999999964311 122222 345554589
Q ss_pred EecccCCCCHHHHHHHHHHHH
Q 029177 158 ECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
++||++|.|++++++++.+..
T Consensus 141 ~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 141 PISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EEEeeCCCCHHHHHHHHHhhC
Confidence 999999999999999998843
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.1e-21 Score=155.88 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=108.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc----c---cccCcCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRG 78 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~---~~~~~~~ 78 (197)
...|+|||.||||||||+++|+..... .+|..|+.......+...+ ..+++||+||.....+ + ....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 357999999999999999999985432 3455555444444555566 5788999999642111 1 1223578
Q ss_pred CcEEEEEEECCCh----hhHHHHHHHHHHHHhhh------------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHH
Q 029177 79 ADVFLLAFSLISK----ASYENISKKWIPELRHY------------APTVPIVLVGTKQDLREDKQYLINHPGATPITTA 142 (197)
Q Consensus 79 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 142 (197)
+|++++|+|+++. +.+... ..+...+..+ ..+.|++||+||+|+.+... .. +
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----------l~-e 304 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----------LA-E 304 (500)
T ss_pred cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH----------HH-H
Confidence 9999999999863 334333 3333333322 23689999999999965332 11 2
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 143 QGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
.........+. +++++||++++|+++++.++.+.+...+
T Consensus 305 ~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 305 FVRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 22223334454 8999999999999999999998875543
No 174
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=1.8e-21 Score=155.08 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=107.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc--ccccc------cCcCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG 78 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~------~~~~~ 78 (197)
.+|+++|.+|||||||+|+|.+..... +...++.+.....+.+.+. ..+.+|||+|..+. ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999865432 3334444444555555552 25679999998432 11122 23578
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|++++|+|++++.+++.. ..|...+.... .+.|+++|+||+|+..... ... . ....+...++
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~~---~-~~~~~~~~~v 340 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PRI---D-RDEENKPIRV 340 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HHH---H-HHhcCCCceE
Confidence 9999999999999887776 44444444332 4799999999999964211 000 1 1123432358
Q ss_pred EecccCCCCHHHHHHHHHHHHcC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.+||++|+|++++++++.+.+..
T Consensus 341 ~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 341 WLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999998753
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=1.2e-21 Score=163.64 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=110.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee---eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
+..+|+++|++++|||||+++|....+.....+... ..+......++....+.||||||++.|..++...+..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 456899999999999999999998766544333221 22222333344558899999999999999998899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH-------HHHcC-Cc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL-------KKLIG-AA 154 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~ 154 (197)
++|+|+++....... ..+ ..+.. .++|+++++||+|+.... .++..+. ...++ ..
T Consensus 323 ILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~-------------~e~v~~eL~~~~ll~e~~g~~v 385 (742)
T CHL00189 323 ILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANAN-------------TERIKQQLAKYNLIPEKWGGDT 385 (742)
T ss_pred EEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccC-------------HHHHHHHHHHhccchHhhCCCc
Confidence 999999885433332 222 22222 378999999999996521 1111111 22222 35
Q ss_pred EEEEecccCCCCHHHHHHHHHHHH
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+++++||++|+|++++++++....
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhhh
Confidence 899999999999999999998754
No 176
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=1.7e-21 Score=161.16 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=117.2
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CCC-------ceeeeeeEEE--EE---CCeEEEEEEEe
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YVP-------TVFDNFSANV--VV---DGSTVNLGLWD 61 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----~~~-------~~~~~~~~~~--~~---~~~~~~~~~~D 61 (197)
||..++.-+++++|+.++|||||+.+|+.. .+... +.. ...+.....+ .+ ++..+.+++||
T Consensus 1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 666677779999999999999999999862 22110 000 0011111111 11 45568999999
Q ss_pred cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccH
Q 029177 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITT 141 (197)
Q Consensus 62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 141 (197)
|||+.+|...+...++.+|++++|+|+++..+.... ..|..... .++|+++|+||+|+.+.. ..
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------~~ 144 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------PE 144 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------HH
Confidence 999999998888899999999999999987665554 34433322 378999999999986421 11
Q ss_pred HHHHHHHHHcCCc--EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 142 AQGEELKKLIGAA--VYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 142 ~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
....++.+.++.. .++.+||++|.|++++++++.+.+..+.
T Consensus 145 ~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 145 RVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 2233444444442 4899999999999999999999886553
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=1e-21 Score=140.45 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=96.7
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEecCCCcC----------ccc
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNR 70 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~----------~~~ 70 (197)
+.+.+..+|+++|++|+|||||++++.+..+...+.++...... .....++ .+.+||+||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 45567889999999999999999999987643333333211111 1122232 578999999532 222
Q ss_pred ccccCcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177 71 LRPLSYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL 147 (197)
Q Consensus 71 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
....+++ .++++++|+|++++-+.... .+...+... +.|+++++||+|+..... .....++.+..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~ 157 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKA 157 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence 2222333 46899999999886555553 233444433 789999999999964321 00223444455
Q ss_pred HHHcC-CcEEEEecccCCCCHH
Q 029177 148 KKLIG-AAVYIECSSKTQQNVK 168 (197)
Q Consensus 148 ~~~~~-~~~~~~~Sa~~~~~i~ 168 (197)
....+ ..++|++||++|+|++
T Consensus 158 l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 158 LKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HhhccCCCceEEEECCCCCCCC
Confidence 55543 2379999999999974
No 178
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=2.9e-21 Score=140.51 Aligned_cols=118 Identities=13% Similarity=0.198 Sum_probs=87.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCC-cEEEEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFLLAFS 87 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~d 87 (197)
+|+++|++|||||||+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999987766554442211111111113346788999999999988888888888 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccc
Q 029177 88 LISK-ASYENISKKWIPELRHY---APTVPIVLVGTKQDLRED 126 (197)
Q Consensus 88 ~~~~-~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~ 126 (197)
+++. .++......+...+... .+++|+++++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9998 67777644444443322 258999999999998753
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=5e-21 Score=161.21 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=109.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
+.-.|+++|+.++|||||+++|....+.....+.. .......+.+++ ..++|||||||+.|..++...+..+|++++
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 56789999999999999999998877655443333 222233445555 578899999999999999888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHH--HHHHHHHHcC-CcEEEEecc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTA--QGEELKKLIG-AAVYIECSS 161 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~Sa 161 (197)
|||+++....... ..| ..... .++|+++++||+|+.+.... .+..+ +...++..++ ..+++++||
T Consensus 367 VVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~e--------~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 367 VVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANPD--------RVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred EEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCHH--------HHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 9999885332222 222 22222 37999999999999652110 01100 0011223333 358999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 029177 162 KTQQNVKTVFDAAIKV 177 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~ 177 (197)
++|+|++++|+++...
T Consensus 435 ktG~GI~eLle~I~~~ 450 (787)
T PRK05306 435 KTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCchHHHHhhhhh
Confidence 9999999999999754
No 180
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=4.4e-21 Score=138.13 Aligned_cols=161 Identities=20% Similarity=0.216 Sum_probs=108.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------------CCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------------VPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 66 (197)
+..+|+++|+.++|||||+++|....-.... ...+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4679999999999999999999863211100 000011111222211334788899999999
Q ss_pred CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-
Q 029177 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE- 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~- 145 (197)
+|.......+..+|++++|+|+.+....... ..+..+... ++|+++++||+|+...+. ....++..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~~---------~~~~~~~~~ 148 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKEL---------EEIIEEIKE 148 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHHH---------HHHHHHHHH
T ss_pred ceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhhH---------HHHHHHHHH
Confidence 9888877789999999999999987555443 334445444 789999999999984321 01112222
Q ss_pred HHHHHcC-----CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 146 ELKKLIG-----AAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 146 ~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+.+.++ .+|++.+||.+|.|++++++.+.+.+.
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3444442 468999999999999999999998763
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=4.3e-21 Score=138.98 Aligned_cols=159 Identities=18% Similarity=0.089 Sum_probs=100.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC----------ccccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLRPL 74 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 74 (197)
....+|+++|++|+|||||+++|.+..+...+.++............ ...+.+||+||... +......
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45689999999999999999999987654444444322111111111 25788999999532 2222222
Q ss_pred CcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 75 SYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 75 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+++ .++++++++|.+++.+.... .+...+.. .+.|+++++||+|+..... .....+.........
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~~ 167 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKFG 167 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHhc
Confidence 333 34688889998876554332 22233332 2689999999999865321 001112233333333
Q ss_pred CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 152 GAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
. .+++++||++++|++++++.+.+.+
T Consensus 168 ~-~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 168 D-DEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred C-CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3 4899999999999999999998765
No 182
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=3.6e-21 Score=140.15 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=101.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC--CCCC---CceeeeeeEEEEEC---------------------------C---
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYV---PTVFDNFSANVVVD---------------------------G--- 52 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~--~~~~---~~~~~~~~~~~~~~---------------------------~--- 52 (197)
++|+++|+.|+|||||+..+.+.... .... .+....+. .+... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYA-NAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeeccc-ccccccccCcCCCCccccccccccccccccccCCcc
Confidence 47999999999999999999653110 1100 00000000 00000 1
Q ss_pred -eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 53 -STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 53 -~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
....+.|||+||+++|...+...+..+|++++|+|++++ .+.+.+ ..+... ...|+++|+||+|+....
T Consensus 80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-----~~~~~~-~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-----AALEIM-GLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-----HHHHHc-CCCcEEEEEEchhccCHH
Confidence 115788999999998877777778899999999999974 222222 222221 234799999999997532
Q ss_pred hhhcCCCCCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 128 QYLINHPGATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
.. ....+...++...+ ...+++++||++|+|++++++++.+.+..+
T Consensus 154 ~~--------~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 154 QA--------LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HH--------HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 10 01123334444332 234799999999999999999999877554
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=4.9e-21 Score=158.19 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=113.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhc---CCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS---NTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+.|+++|++++|||||+++|.+ +.+..++.++. .+.....+..++ ..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999986 33433433333 233333455555 78889999999999888777889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC---CcEE
Q 029177 84 LAFSLIS---KASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG---AAVY 156 (197)
Q Consensus 84 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 156 (197)
+|+|+++ +.+.+.+ ..+... ++| +++|+||+|+.+.... ....++..++...++ ..++
T Consensus 79 LVVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~--------~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEI--------KRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHH--------HHHHHHHHHHHHHhCCCCCCcE
Confidence 9999998 4444443 222222 677 9999999999764320 012345556665553 3589
Q ss_pred EEecccCCCCHHHHHHHHHHHHcCC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+++||++|+|+++++.++...+...
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhC
Confidence 9999999999999999998766543
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.3e-20 Score=151.96 Aligned_cols=159 Identities=21% Similarity=0.202 Sum_probs=108.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-----------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 72 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------- 72 (197)
..++|+++|.+|+|||||+++|++.. ......+++.+.....+..++ ..+.+|||||........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46999999999999999999999753 233444455555555555566 456799999975433221
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG 152 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
...++.+|++++|+|++++.+..+. .+...+... +.|+++++||+|+.+.... ....++........+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~--------~~~~~~~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKTM--------EEFKKELRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHHH--------HHHHHHHHHhccccc
Confidence 1246789999999999998777664 344444433 6899999999999743210 001111111112234
Q ss_pred CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 153 AAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
..+++++||+++.|++++++.+.+..
T Consensus 318 ~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 318 YAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999988754
No 185
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=9.1e-21 Score=149.49 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=112.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-------ccccCcCCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGA 79 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~ 79 (197)
..|++||.||||||||+|+|++.+. ...+..|+.......+...+ ...+.|+|+||...-.+ .....++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3699999999999999999997543 23444455444444444443 23578999999743211 111246789
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177 80 DVFLLAFSLI---SKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 153 (197)
Q Consensus 80 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
|++++|+|++ +.+.++.. ..|+..+..+. .+.|+++|+||+|+..... + .+...++....+.
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e----------l-~~~l~~l~~~~~~ 306 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE----------A-EERAKAIVEALGW 306 (390)
T ss_pred CEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH----------H-HHHHHHHHHHhCC
Confidence 9999999998 45566665 66767666653 3689999999999965332 2 2334455555443
Q ss_pred -cEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 154 -AVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 154 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
.+++.+||++++|++++++++.+.+...
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2689999999999999999999987543
No 186
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=4.5e-21 Score=128.33 Aligned_cols=167 Identities=26% Similarity=0.536 Sum_probs=137.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
.+||.++|++..|||||+-.+.++.+.+++..+.+ ....+++.+.+..+.+-+||..|++++..+.+..-..+-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 58999999999999999999999988777766664 55578889999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 86 FSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
||.+.++++..+ ..|..+.+.... -+|+ +||+|.|+.-.-. ++-+.-...+++.+++-.++ +.|.+|+...
T Consensus 100 FDLt~r~TLnSi-~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~s 171 (205)
T KOG1673|consen 100 FDLTRRSTLNSI-KEWYRQARGLNKTAIPI-LVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHS 171 (205)
T ss_pred EecCchHHHHHH-HHHHHHHhccCCccceE-EeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeecccc
Confidence 999999999999 888887776653 4554 5799999754211 11111233567888888898 8999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029177 165 QNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~~~ 181 (197)
-|++.+|.-+...+.+-
T Consensus 172 INv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFNL 188 (205)
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 99999999888776543
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=5.9e-21 Score=161.57 Aligned_cols=157 Identities=22% Similarity=0.208 Sum_probs=112.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc-ccc----------c
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NRL----------R 72 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~----------~ 72 (197)
...||+++|.+|||||||+|+|++... ...+.+++.+.+...+.+++.. +.+|||||..+. ... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 457999999999999999999998753 4556666666666666777754 559999996421 111 1
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-HHHHH-
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-ELKKL- 150 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 150 (197)
...++.+|++++|+|+++..+..+. . +...+.. .+.|+++|+||+|+.+... .+... .+...
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~--~~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l 590 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVD--AGRALVLVFNKWDLMDEFR------------RQRLERLWKTEF 590 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence 2236789999999999999888776 3 3344433 3789999999999965321 11111 12222
Q ss_pred --cCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 151 --IGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 151 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
....+.+.+||++|.|++++++.+.+.+..
T Consensus 591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 233467999999999999999999887754
No 188
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=3.7e-20 Score=137.24 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=102.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-------ccccCcCCCc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 80 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 80 (197)
+|+++|.+|+|||||+++|.+... ...+..++.+.....+.+++ ..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998653 23444444444455555666 6788999999754331 1234678999
Q ss_pred EEEEEEECCChhh-HHHHHHHHH-----------------------------------------HHHhhh----------
Q 029177 81 VFLLAFSLISKAS-YENISKKWI-----------------------------------------PELRHY---------- 108 (197)
Q Consensus 81 ~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~~---------- 108 (197)
++++|+|++++.. ...+ ...+ ..++++
T Consensus 80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999988653 2222 1111 111111
Q ss_pred ---------------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHH
Q 029177 109 ---------------APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173 (197)
Q Consensus 109 ---------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 173 (197)
...+|+++|+||+|+.. .+++..+++. ++++++||+++.|++++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~ 220 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER 220 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence 12358999999999843 3444455443 35899999999999999999
Q ss_pred HHHHH
Q 029177 174 AIKVV 178 (197)
Q Consensus 174 i~~~~ 178 (197)
+.+.+
T Consensus 221 i~~~L 225 (233)
T cd01896 221 IWDKL 225 (233)
T ss_pred HHHHh
Confidence 98865
No 189
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=9.2e-21 Score=155.87 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=103.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC----------------CeEEEEEEEecCCCcCcccc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------------GSTVNLGLWDTAGQEDYNRL 71 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~D~~g~~~~~~~ 71 (197)
-|+++|++++|||||+++|.+..+.....++..... ...+..+ .....+.||||||++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 589999999999999999998876544333221110 0001110 01123889999999999999
Q ss_pred cccCcCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCC-----CC--Cc--
Q 029177 72 RPLSYRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPG-----AT--PI-- 139 (197)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-----~~--~~-- 139 (197)
+...++.+|++++|||+++ +.+++.+ . .+.. .++|+++++||+|+..........+. .. .+
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~----~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHH-H----HHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 8889999999999999997 4454443 2 2222 27899999999999642100000000 00 00
Q ss_pred -----cHHHHHHHH-------------HHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 140 -----TTAQGEELK-------------KLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 140 -----~~~~~~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
......++. .-.+..+++++||++|+|+++++.++....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000001111 123346899999999999999999887543
No 190
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.1e-21 Score=132.63 Aligned_cols=162 Identities=27% Similarity=0.425 Sum_probs=135.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
.++++++|+.|.||||++++...+.|...+.+++... +......+...+.+..|||+|++.+-.....++-....++++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 7899999999999999999999999999999998544 333333444469999999999999999999999899999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
||++.+-++... .+|...+.+.+.++|+++.|||.|..... .......+-+..+. .+++.||+.+.
T Consensus 90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn~ 155 (216)
T KOG0096|consen 90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSNY 155 (216)
T ss_pred eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeeccccc
Confidence 999999999999 88988888888899999999999987642 11222344445555 89999999999
Q ss_pred CHHHHHHHHHHHHcCCC
Q 029177 166 NVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 166 ~i~~~~~~i~~~~~~~~ 182 (197)
|.+.-|.|+.+.+....
T Consensus 156 NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 156 NFERPFLWLARKLTGDP 172 (216)
T ss_pred ccccchHHHhhhhcCCC
Confidence 99999999999876543
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.7e-20 Score=158.86 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=106.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc--------ccccccCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSY 76 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 76 (197)
..+|+++|.+|||||||+|+|++... ......++.+........++ ..+.+|||||.+.. ......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 46899999999999999999998653 23333444444444445555 56789999997632 12233457
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+.+|++++|+|+++.-...+ ..|...+... +.|+++|+||+|+.... ......+. .+....
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-------------~~~~~~~~--lg~~~~ 413 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE-------------YDAAEFWK--LGLGEP 413 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch-------------hhHHHHHH--cCCCCe
Confidence 89999999999987533333 3455556543 89999999999985421 11112222 233346
Q ss_pred EEecccCCCCHHHHHHHHHHHHcC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+++||++|.|++++|+++.+.+..
T Consensus 414 ~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 414 YPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EEEECCCCCCchHHHHHHHHhccc
Confidence 799999999999999999998754
No 192
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.7e-20 Score=155.12 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=106.1
Q ss_pred CCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc------cccC--cCCCcEEEE
Q 029177 14 GDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLS--YRGADVFLL 84 (197)
Q Consensus 14 G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~--~~~~~~~i~ 84 (197)
|.+|||||||+|++.+..+.. ++..++.+.....+..++ ..+++||+||+.++... ...+ ...+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999876533 344444555555566666 45789999999887654 2222 247899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|+|.++.+.. .++...+.+ .+.|+++++||+|+.+... +. .+...+++..+. +++++||++|
T Consensus 79 VvDat~ler~----l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg 140 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLE--LGIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEG 140 (591)
T ss_pred EecCCcchhh----HHHHHHHHh--cCCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCC
Confidence 9999885432 122233333 3799999999999975432 32 346778888886 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029177 165 QNVKTVFDAAIKVV 178 (197)
Q Consensus 165 ~~i~~~~~~i~~~~ 178 (197)
+|++++++++.+.+
T Consensus 141 ~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 141 RGIERLKDAIRKAI 154 (591)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 193
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=5e-20 Score=127.12 Aligned_cols=158 Identities=20% Similarity=0.227 Sum_probs=118.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCC--------CCCCCC---ceeeeeeEEEEECCeEEEEEEEecCCCcCccccc
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTF--------PTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 72 (197)
+....||+|+|+.++||||++++++.... ..++.. ++...-.......+ ...+.+++||||++|.-+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHH
Confidence 44578999999999999999999998653 122222 32111111222222 2566799999999999999
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI- 151 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (197)
..+.+++.++++++|.+.+..+ .. ...+..+....+ +|++|++||+|+... .+++..+++...-
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a------------~ppe~i~e~l~~~~ 150 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDA------------LPPEKIREALKLEL 150 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCC------------CCHHHHHHHHHhcc
Confidence 9999999999999999999998 33 455555555433 999999999999875 4556666655544
Q ss_pred CCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 152 GAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
-..+.++.+|.++++..+.++.+...
T Consensus 151 ~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCceeeeecccchhHHHHHHHHHhh
Confidence 24589999999999999999998876
No 194
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=3e-20 Score=129.39 Aligned_cols=151 Identities=21% Similarity=0.168 Sum_probs=103.5
Q ss_pred EECCCCCCHHHHHHHHhcCCCC-C-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc-------cCcCCCcEE
Q 029177 12 TVGDGAVGKTCMLISYTSNTFP-T-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 82 (197)
Q Consensus 12 vvG~~~~GKstli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~~~~~ 82 (197)
++|++|+|||||++++.+.... . ...+++............ ...+.+||+||...+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986443 2 222233333333333331 36788999999877654433 367889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH--HHHHHHHcCCcEEEEec
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ--GEELKKLIGAAVYIECS 160 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S 160 (197)
++++|.++..+.... . +...... .+.|+++|+||+|+..... ..... ...........+++++|
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence 999999999887776 2 3333332 3799999999999976432 11110 11222333445899999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 029177 161 SKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~ 177 (197)
|+++.|++++++++.+.
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999999875
No 195
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=5.2e-20 Score=136.59 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=114.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--------ccc
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRP 73 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~ 73 (197)
..+.--|+++|.||||||||+|++.+.+.. .....|+.......+..+ ...+.|+||||--.-.. ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 345678999999999999999999997653 222233333333333334 46788999999532221 123
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 153 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
..+..+|+++||+|+++.....+ ...++.++. .+.|++++.||.|...+.. ........+......
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~f 146 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLPF 146 (298)
T ss_pred HHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCCc
Confidence 34689999999999998766544 345566665 3689999999999877543 123344445555666
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
...+++||++|.|++.+.+.+...+...
T Consensus 147 ~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 147 KEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred ceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 6899999999999999999999887544
No 196
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=3.1e-23 Score=142.62 Aligned_cols=169 Identities=27% Similarity=0.436 Sum_probs=141.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EEECCe-EEEEEEEecCCCcCcccccccCcCCCcE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADV 81 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 81 (197)
.+..+|++|+|.-|+|||+++.+++...|...|..++...+... ...+++ .+.+++||++||++|-.+..-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 34578999999999999999999999988888888885444433 334443 3688999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.++|||+++..+|+.. ..|.+.+.... ..+|+++.+||||...... .-......++++++|....
T Consensus 102 ~~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gw 171 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGW 171 (229)
T ss_pred eEEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccce
Confidence 9999999999999999 88998887765 2567899999999977543 1234677889999999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
+++|++.+.+++|+-..++..++...
T Consensus 172 tets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 172 TETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred eeeccccccChhHHHHHHHHHHHhhc
Confidence 99999999999999999999876554
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=3e-20 Score=149.24 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=101.3
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEEE
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVV 49 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~ 49 (197)
|++...++|+++|++++|||||+++|+.. ..... ...++.+.....
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~-- 78 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK-- 78 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--
Confidence 45667899999999999999999999842 11100 111222222222
Q ss_pred ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177 50 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY 129 (197)
Q Consensus 50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 129 (197)
++...+.+.+|||||+++|.......+..+|++++|+|++++..+......++..+... ...|+++++||+|+.+....
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEK 157 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHH
Confidence 33334788999999999887655556789999999999987322211111222222222 22469999999999652110
Q ss_pred hcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHHH
Q 029177 130 LINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 171 (197)
......++..++....+. .+++++||++|+|+++..
T Consensus 158 ------~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 158 ------RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ------HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 000123455566655553 479999999999998743
No 198
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=1.2e-19 Score=153.51 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=111.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc----------cC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------LS 75 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----------~~ 75 (197)
.++|+++|.||+|||||+|++.+.... .++..++.+.....+..++ ..+++||+||+.++..... .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence 478999999999999999999986442 3444444444444444444 6788999999987754211 12
Q ss_pred --cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177 76 --YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 153 (197)
Q Consensus 76 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
...+|++++|+|.++.+.-. ++...+.+. ++|+++++||+|+.+.+. + ..+..++.+.++.
T Consensus 81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG~ 143 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLGC 143 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhCC
Confidence 24789999999999865432 233344443 799999999999875432 3 3456778888887
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHH
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
|++++||.+++|++++.+.+.+..
T Consensus 144 -pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 144 -PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -CEEEEEeecCCCHHHHHHHHHHhh
Confidence 899999999999999999998765
No 199
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.1e-21 Score=126.11 Aligned_cols=161 Identities=15% Similarity=0.160 Sum_probs=122.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+++..+|+++|..|+||||+..++.-+... ...|+...... .+..++..+++||..|+...+..|+.++.+.|++|
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 347789999999999999999888776543 33444433222 23346689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH----HHHHcCCcEEEE
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE----LKKLIGAAVYIE 158 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 158 (197)
+|+|.+|+..+......+...+.+.. .+..+++++||.|..... ...++.. -.-+...+.+|+
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------------t~~E~~~~L~l~~Lk~r~~~Iv~ 158 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------------TRSEVLKMLGLQKLKDRIWQIVK 158 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------------hHHHHHHHhChHHHhhheeEEEe
Confidence 99999999988777666766666554 567788999999987642 2222111 112223468999
Q ss_pred ecccCCCCHHHHHHHHHHHHcC
Q 029177 159 CSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+||.+|+|+++..+|+.+.+..
T Consensus 159 tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eccccccCCcHHHHHHHHHHhc
Confidence 9999999999999999987643
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=3.5e-20 Score=144.92 Aligned_cols=152 Identities=24% Similarity=0.296 Sum_probs=116.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSY 76 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 76 (197)
-+|++++|.||||||||+|.|.+. ....+..+|+.+.....+.++| +.+.+.||+|.++..+.. ...+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 489999999999999999999984 4566777888899999999999 788899999987655432 2246
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.|+..... ...+ +.....+.
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~-~~~~~~~~ 353 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESE-KLANGDAI 353 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchh-hccCCCce
Confidence 789999999999997444443 1112 2234789999999999976432 1111 22222368
Q ss_pred EEecccCCCCHHHHHHHHHHHHcCC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+.+|+++++|++.+.++|.+.+...
T Consensus 354 i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 354 ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEEEecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999999988766
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=5.3e-20 Score=143.60 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=116.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc---------cccccCc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY 76 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 76 (197)
-.|+++|.||||||||.|||.+.+. ..++.+++.+.......+.+. .|.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 4799999999999999999999644 667777887877777778874 47899999976433 1233456
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
..||+++||+|....-+-.+ ....+.++.. +.|+++|+||+|-.. .+....-...+|.-..
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~~--~kpviLvvNK~D~~~---------------~e~~~~efyslG~g~~ 142 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILRRS--KKPVILVVNKIDNLK---------------AEELAYEFYSLGFGEP 142 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEEcccCch---------------hhhhHHHHHhcCCCCc
Confidence 89999999999988666555 3455566632 699999999999853 2223334445666689
Q ss_pred EEecccCCCCHHHHHHHHHHHHc
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
+.+||.+|.|+.+++++++..+.
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcC
Confidence 99999999999999999999873
No 202
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.84 E-value=4.2e-20 Score=121.86 Aligned_cols=161 Identities=23% Similarity=0.263 Sum_probs=118.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+.+.+||+++|..++|||||+.+|.+.... ...||.+.. ...+..+ .++.+.+||++|+...+..|..++.+.|++|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc-eEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 457899999999999999999999876432 222332221 2333333 3489999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH--HH-HHcCCcEEEEe
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE--LK-KLIGAAVYIEC 159 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~ 159 (197)
+|+|.+|+..|++....+...+.... ..+|+.|.+||.|+...-. ..+.+.. ++ -+...+++-++
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~-----------~eeia~klnl~~lrdRswhIq~c 159 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK-----------VEEIALKLNLAGLRDRSWHIQEC 159 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc-----------hHHHHHhcchhhhhhceEEeeeC
Confidence 99999999999988777766665544 6899999999999865321 1111111 11 11223456689
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 029177 160 SSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~ 178 (197)
||.+++|+..-.+|+....
T Consensus 160 sals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 160 SALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred ccccccCccCcchhhhcCC
Confidence 9999999999999987643
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=4.5e-20 Score=148.25 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=103.4
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhc--CCCCCC------------------------------CCCceeeeeeEEE
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------------YVPTVFDNFSANV 48 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~~------------------------------~~~~~~~~~~~~~ 48 (197)
|-.+...++|+++|+.++|||||+.+|+. +..... ....+.+.....
T Consensus 1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~- 79 (426)
T TIGR00483 1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK- 79 (426)
T ss_pred CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE-
Confidence 34556689999999999999999999985 222110 001111221222
Q ss_pred EECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 49 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIS-KKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 49 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
+....+.+.+||+||+++|.......+..+|++++|+|+++.++..... ..+.... ......|+++++||+|+.+..
T Consensus 80 -~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~ 157 (426)
T TIGR00483 80 -FETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYD 157 (426)
T ss_pred -EccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCcc
Confidence 3333478899999999988766666678999999999999985432110 1111122 222345799999999996421
Q ss_pred hhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHH
Q 029177 128 QYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKT 169 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 169 (197)
. .......+++.++++..+. .+++++||++|+|+.+
T Consensus 158 ~------~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 158 E------EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred H------HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 1 0000223556667776653 5799999999999986
No 204
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=3.4e-19 Score=139.07 Aligned_cols=157 Identities=23% Similarity=0.248 Sum_probs=118.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----------c
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R 72 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~ 72 (197)
..+||+++|.||+|||||+|++++. .......+|+.+.....+..+++ .+.++||+|..+-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 4799999999999999999999984 34556667777888888888885 4559999996543322 1
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHH----HHHHHH
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTA----QGEELK 148 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~ 148 (197)
...+..+|++++|+|++.+-+-.+. +....+.+. +.+++||+||.|+.+... ...+ +.....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l 320 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL 320 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence 2235789999999999998887774 555555554 789999999999977432 2222 333344
Q ss_pred HHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 149 KLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 149 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
...+..|.+.+||+++.+++++|+.+....
T Consensus 321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 321 PFLDFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred ccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 444566899999999999999999988754
No 205
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=1.9e-19 Score=133.73 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=109.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------C-----CCCCce----eeeeeEEEEECCeEEEEEEEecCCCcCcccc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFP--------T-----DYVPTV----FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 71 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~--------~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 71 (197)
+|+++|++|+|||||+++|+...-. . ++.+.. .+.......+......+.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863110 0 000000 0111111222233478889999999999888
Q ss_pred cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--------c-C------CC--
Q 029177 72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--------I-N------HP-- 134 (197)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--------~-~------~~-- 134 (197)
+...++.+|++++|+|+++...... ..+...+... ++|+++++||+|+....... . . .+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 8888999999999999998755433 3444455443 78999999999987532110 0 0 00
Q ss_pred ------------------------------CCCCccHHHHH----HHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 135 ------------------------------GATPITTAQGE----ELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 135 ------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+...++.++.. ........+|++..||.++.|++.+++.+...+..
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 00012222222 22223456789999999999999999999987743
No 206
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-19 Score=134.69 Aligned_cols=173 Identities=14% Similarity=0.152 Sum_probs=110.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc------------ccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------------RLR 72 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~~ 72 (197)
.+.++|+|||.||+|||||.|.+.+.+...-......+.....-.+......+.|+||||.-.-. ...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 46899999999999999999999998775554444333333333333344788899999943211 112
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh-----cCCCCCCCc-cHHHHHH
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL-----INHPGATPI-TTAQGEE 146 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-----~~~~~~~~~-~~~~~~~ 146 (197)
...+..||.+++++|+++....-. .+.+..+..+ .++|-++|.||.|........ ...++.... ..+-...
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 234578999999999997444333 3445555554 378999999999987654322 111111111 1111111
Q ss_pred HHH---------HcC---CcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 147 LKK---------LIG---AAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 147 ~~~---------~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+.. ..| .-.+|.+||++|+|++++-++++..+..
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 111 111 2237889999999999999999987643
No 207
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.82 E-value=3.3e-20 Score=147.52 Aligned_cols=170 Identities=26% Similarity=0.401 Sum_probs=130.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+.+.+||+++|+.|+||||||-.+....|+++-++.. +.+.....+....+...+.|++..++-+.....-++.||++.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 3467999999999999999999999999977755543 222222223333356789999876665555566789999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH-HHHHHHHcCC-cEEEE
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ-GEELKKLIGA-AVYIE 158 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 158 (197)
++|+.+++++++.+..+|+..+++.. .++|+|+||||+|...... .+.+. ..-+..++.. -.+++
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtcie 154 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIE 154 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHh
Confidence 99999999999999999999999988 6899999999999987653 22222 3333333332 24799
Q ss_pred ecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177 159 CSSKTQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
|||++..++.++|....++++.+-.+
T Consensus 155 cSA~~~~n~~e~fYyaqKaVihPt~P 180 (625)
T KOG1707|consen 155 CSALTLANVSELFYYAQKAVIHPTSP 180 (625)
T ss_pred hhhhhhhhhHhhhhhhhheeeccCcc
Confidence 99999999999999999988766554
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=6.8e-19 Score=145.37 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=112.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Cce-eeeeeEEEEECCeEEEEEEEecCCCcCccc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR 70 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~--~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 70 (197)
+.-+|+++|+.++|||||+++|+. +.+...+. .+. .+.......+....+.+.+|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999997 44432211 011 222233334444558899999999999999
Q ss_pred ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177 71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL 150 (197)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
.+..+++.+|++++|+|+++....... .++..+.. .++|.++++||+|+...+. ....++..++...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~--~gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~ 150 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFA--YGLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN 150 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHH--cCCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence 889999999999999999886443332 22233333 2789999999999875321 0111223333211
Q ss_pred c------CCcEEEEecccCCC----------CHHHHHHHHHHHHcCCC
Q 029177 151 I------GAAVYIECSSKTQQ----------NVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 151 ~------~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 182 (197)
. ..+|++.+||.+|. |+..+++.|+..+..+.
T Consensus 151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 1 12479999999998 68999999999886554
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.82 E-value=9.9e-20 Score=122.92 Aligned_cols=136 Identities=21% Similarity=0.212 Sum_probs=98.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc----CcccccccCcCCCcEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~ 84 (197)
||+++|+.|+|||||+++|.+... .+..|.. +.+.+ .++||||.- .+....-....+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~------i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA------IEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccce------eEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999988654 2222221 11222 368999952 222222233468999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
+.|++++.+...- .+...+ +.|+|-|+||+|+..+. ...+.+.++.+.-|....|++|+.+|
T Consensus 70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 9999998654331 222222 57999999999998432 45678888999999988999999999
Q ss_pred CCHHHHHHHHH
Q 029177 165 QNVKTVFDAAI 175 (197)
Q Consensus 165 ~~i~~~~~~i~ 175 (197)
+|++++.+.|.
T Consensus 132 eGi~eL~~~L~ 142 (143)
T PF10662_consen 132 EGIEELKDYLE 142 (143)
T ss_pred cCHHHHHHHHh
Confidence 99999998874
No 210
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=4.5e-19 Score=124.83 Aligned_cols=154 Identities=16% Similarity=0.074 Sum_probs=95.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCc----------ccccccCc-
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY----------NRLRPLSY- 76 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~- 76 (197)
.|+++|++|+|||||++.+.++.+.....++.. +........++ .+++||+||.... ......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996555444433331 11122222233 7889999995332 22222222
Q ss_pred --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-HcCC
Q 029177 77 --RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-LIGA 153 (197)
Q Consensus 77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (197)
.+++++++++|.++..+.... .....+... +.|+++++||+|+..... ............+ ....
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~ 145 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID 145 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence 356788999999876433221 222333332 589999999999854221 0011122222222 3455
Q ss_pred cEEEEecccCCCCHHHHHHHHHHH
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
.+++++||+++.|++++++++.+.
T Consensus 146 ~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 146 PPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CceEEEecCCCCCHHHHHHHHHHh
Confidence 689999999999999999999875
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=2.4e-19 Score=131.51 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=79.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----------CCce-------eee--eeEEEEE---CCeEEEEEEEecCCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----------VPTV-------FDN--FSANVVV---DGSTVNLGLWDTAGQ 65 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~-----------~~~~-------~~~--~~~~~~~---~~~~~~~~~~D~~g~ 65 (197)
+|+++|+.|+|||||+++|+........ ..+. .+. ....+.. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875432210 0000 000 0111111 345688999999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
.+|.......+..+|++++|+|+++..+... ..+...... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9998777788899999999999988776654 334344333 268999999999985
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=8.7e-19 Score=145.42 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=104.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc---CCCCCCCC-CceeeeeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTS---NTFPTDYV-PTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~---~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
-|+++|+.++|||||+++|.+ +.+.++.. ..+.+.....+.. ++ ..+.|||+|||++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 588999999999999999986 33333322 2222211122222 33 35789999999998776666788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--CcEEEEec
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--AAVYIECS 160 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~S 160 (197)
+|+|+++...-... ..+..+... ++| +++|+||+|+.+.... ....++..++....+ ..+++++|
T Consensus 80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~--------~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARI--------AEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHH--------HHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 99999874322221 122233322 455 5799999999753220 012244455555444 25899999
Q ss_pred ccCCCCHHHHHHHHHHHHcC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~ 180 (197)
|++|+|++++++.|.+....
T Consensus 148 A~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 148 ATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCCCHHHHHHHHHhhcc
Confidence 99999999999999876543
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=3.4e-19 Score=147.19 Aligned_cols=160 Identities=15% Similarity=0.139 Sum_probs=109.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCCCCCC-------------ceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS--NTFPTDYVP-------------TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 73 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 73 (197)
+|+++|+.++|||||+++|+. +.+...... ...+.......+....+.+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 699999999999999999986 333221100 00111222222333347888999999999988888
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK---- 149 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 149 (197)
..++.+|++++|+|+++...... ..|+..+... ++|+++++||+|+.+.+. ....++...+..
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAELGA 149 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhhcc
Confidence 89999999999999987543222 3444444443 789999999999865321 011233333332
Q ss_pred ---HcCCcEEEEecccCCC----------CHHHHHHHHHHHHcCCC
Q 029177 150 ---LIGAAVYIECSSKTQQ----------NVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 150 ---~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 182 (197)
+.. .|++.+||++|. |+..+|+.+.+.+..+.
T Consensus 150 ~~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 150 DDEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred cccccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 223 479999999995 89999999999887654
No 214
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=4.1e-19 Score=129.81 Aligned_cols=151 Identities=17% Similarity=0.102 Sum_probs=93.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEEEECCeEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVVVDGSTVN 56 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 56 (197)
||+++|++|+|||||+++|+.. ..... ...++.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 6899999999999999999752 21100 01111111122222333 56
Q ss_pred EEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCC
Q 029177 57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGA 136 (197)
Q Consensus 57 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 136 (197)
+.+|||||+++|.......+..+|++++|+|+++...-... .....+... ...++++|+||+|+...... .
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~------~ 149 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEE------V 149 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHH------H
Confidence 77999999988866666678899999999999876432222 112222222 12457889999998642110 0
Q ss_pred CCccHHHHHHHHHHcCC--cEEEEecccCCCCHHHH
Q 029177 137 TPITTAQGEELKKLIGA--AVYIECSSKTQQNVKTV 170 (197)
Q Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~ 170 (197)
......+..++...++. .+++.+||++|+|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 00122345556666663 35899999999998753
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=1e-18 Score=144.27 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=101.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEE------CCeEE----------EEEEEecCCCcCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV------DGSTV----------NLGLWDTAGQEDY 68 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~----------~~~~~D~~g~~~~ 68 (197)
+.-.|+++|++++|||||+++|.+........+........ .+.. .+... .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 44579999999999999999998765433333221111100 0000 01111 1679999999999
Q ss_pred ccccccCcCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCC-----cc
Q 029177 69 NRLRPLSYRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATP-----IT 140 (197)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~ 140 (197)
..++...+..+|++++|+|+++ +.+++.+ . .+.. .++|+++++||+|+...-........... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9888888889999999999998 5555554 2 2222 37899999999998521000000000000 00
Q ss_pred -HH-------HH-HHHH-------------HHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 141 -TA-------QG-EELK-------------KLIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 141 -~~-------~~-~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
.+ +. ..+. ...+..+++++||++|+|+++++..+...
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 00 00 1111 11234689999999999999999888653
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=7.7e-19 Score=140.06 Aligned_cols=167 Identities=16% Similarity=0.079 Sum_probs=103.1
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCC---CCC-CCCce-eeee-----------------eEEEEEC--C----eE
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTF---PTD-YVPTV-FDNF-----------------SANVVVD--G----ST 54 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~---~~~-~~~~~-~~~~-----------------~~~~~~~--~----~~ 54 (197)
.....++|+++|+.++|||||+.+|.+.-. .++ ....+ ...+ ......+ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 345579999999999999999999965311 111 01111 1100 0000001 1 12
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH 133 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 133 (197)
..+.+||+||+++|..........+|++++|+|++++. ..... ..+ ..+... ...|+++|+||+|+.+...
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~----- 156 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHL-MALDII-GIKNIVIVQNKIDLVSKER----- 156 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHH-HHHHHc-CCCcEEEEEEeeccccchh-----
Confidence 57889999999988765555566789999999999653 22221 111 222221 2247899999999975321
Q ss_pred CCCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 134 PGATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.....++...+...+ ...+++++||++++|++++++.|...+..
T Consensus 157 ---~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 157 ---ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ---HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 001123344444432 23489999999999999999999987644
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=1.6e-18 Score=125.03 Aligned_cols=148 Identities=19% Similarity=0.176 Sum_probs=95.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--------C---CC------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF--------P---TD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~--------~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 69 (197)
.++|+++|+.++|||||+++|+.... . -+ ....+.. .....++.....+.++||||+.+|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITIN--TAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEE--eeeeEecCCCeEEEEEECcCHHHHH
Confidence 47999999999999999999985310 0 00 1111111 1122233334577899999998887
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELK 148 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
......+..+|++++|+|++....-.. ...+..+... ++| ++++.||+|+..... ......+++..+.
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l 148 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELL 148 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHH
Confidence 766777889999999999987543333 2233344433 566 778999999863221 0001223455555
Q ss_pred HHcCC----cEEEEecccCCCCH
Q 029177 149 KLIGA----AVYIECSSKTQQNV 167 (197)
Q Consensus 149 ~~~~~----~~~~~~Sa~~~~~i 167 (197)
...+. ++++.+||++|.++
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 55543 68999999999874
No 218
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=6.9e-19 Score=140.36 Aligned_cols=165 Identities=16% Similarity=0.068 Sum_probs=103.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC---CCC-CCce-eeeee-------------EEEEE----CC------eEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP---TDY-VPTV-FDNFS-------------ANVVV----DG------STVN 56 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~---~~~-~~~~-~~~~~-------------~~~~~----~~------~~~~ 56 (197)
+..++|+++|++++|||||+++|.+.... ++. ...+ ...+. ..+.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 35689999999999999999999653211 110 0011 00000 00001 11 1357
Q ss_pred EEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCC
Q 029177 57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPG 135 (197)
Q Consensus 57 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 135 (197)
+.+||+|||++|...+...+..+|++++|+|+++.. ..... ..+..+... ...|+++++||+|+.+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~--e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~------ 152 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK--EHLMALEII-GIKNIVIVQNKIDLVSKEKA------ 152 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH--HHHHHHHHc-CCCeEEEEEEccccCCHHHH------
Confidence 889999999999877777778899999999999643 11111 112222221 23478999999999753210
Q ss_pred CCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 136 ATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
....++..++.... ...+++++||++|+|++++++++...+..
T Consensus 153 --~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 153 --LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred --HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 01123334444433 13489999999999999999999987653
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=3.7e-18 Score=125.72 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=97.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------------e-----ee--e------------------EEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF--------------D-----NF--S------------------ANVV 49 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~--------------~-----~~--~------------------~~~~ 49 (197)
||+++|+.++|||||+.+|..+.+......... . .+ . ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997665332110000 0 00 0 0011
Q ss_pred ECCeEEEEEEEecCCCcCcccccccCc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 50 VDGSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
.. ...+.+.|+||+++|.......+ ..+|++++|+|+.....-.. ..++..+... ++|+++|.||+|+....
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence 11 25678999999998865544444 36899999999887654333 3444555544 68999999999986532
Q ss_pred hhhcCCCCCCCccHHHHHHHHH-------------------------HcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177 128 QYLINHPGATPITTAQGEELKK-------------------------LIGAAVYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
... ...++..++.. ....+|+|.+||.+|+|++++...|..
T Consensus 155 ~~~--------~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQ--------ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHH--------HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 200 11111111211 112458999999999999999877754
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=1.3e-18 Score=128.04 Aligned_cols=151 Identities=15% Similarity=0.045 Sum_probs=91.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCC------------------------C------CCCceeeeeeEEEEECCeEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN--TFPT------------------------D------YVPTVFDNFSANVVVDGSTVN 56 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~--~~~~------------------------~------~~~~~~~~~~~~~~~~~~~~~ 56 (197)
+|+++|+.++|||||+.+|+.. .... + ...++.+.....+...+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 4899999999999999998641 1100 0 01111121222333444 67
Q ss_pred EEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177 57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-------SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY 129 (197)
Q Consensus 57 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 129 (197)
+.+||+||+.+|...+...++.+|++++|+|+++.. ..... ..+ .... .....|+++++||+|+......
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLAR-TLGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHH-HcCCCeEEEEEEcccccccccc
Confidence 889999999887766666678899999999999852 11121 222 2222 2224689999999999731000
Q ss_pred hcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHH
Q 029177 130 LINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVK 168 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~ 168 (197)
........++...+....+. .+++.+||++|+|++
T Consensus 156 ----~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 ----EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 00000111233334444443 579999999999987
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=6.6e-18 Score=134.28 Aligned_cols=163 Identities=18% Similarity=0.145 Sum_probs=105.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC------------C----C-CCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP------------T----D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~------------~----~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
...++|+++|+.++|||||+++|++.... + + ....+.+. ....++.....+.++|+|||++
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence 35789999999999999999999862110 0 0 11111111 1223333345778999999998
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEE 146 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|.......+..+|++++|+|+++....... ..+..+... ++| +++++||+|+.++... .....++..+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~-------~~~i~~~i~~ 156 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEEL-------LELVEMEVRE 156 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHH-------HHHHHHHHHH
Confidence 876666667889999999999875333332 222333333 678 6788999999743210 0012235556
Q ss_pred HHHHcCC----cEEEEecccCCC--------CHHHHHHHHHHHHcC
Q 029177 147 LKKLIGA----AVYIECSSKTQQ--------NVKTVFDAAIKVVLQ 180 (197)
Q Consensus 147 ~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~~ 180 (197)
+....+. .+++.+||++|. ++.++++.+.+.+..
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 6555553 589999999983 678888888877653
No 222
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=123.78 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=112.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-------ccCcCCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRGA 79 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~ 79 (197)
-.+.+||-||+|||||++.++..+ -...|..|+..+.-..+..++. ..+.+-|+||...-.++. ...++.|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 358899999999999999999843 3456777765444444445543 348899999965433322 2235789
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177 80 DVFLLAFSLISK---ASYENISKKWIPELRHY---APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 153 (197)
Q Consensus 80 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+.++||+|++.. +-++.+ +.+...+..+ ..+.|.+||+||+|+.+.. .....++++.+..
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQN 341 (366)
T ss_pred ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCC
Confidence 999999999998 555555 3333444333 3678999999999996432 2335788888887
Q ss_pred cEEEEecccCCCCHHHHHHHHHHH
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
..++++||++++|+.++++.+.+.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhhc
Confidence 679999999999999999988653
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.1e-17 Score=133.02 Aligned_cols=149 Identities=18% Similarity=0.139 Sum_probs=95.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC-------C-----CC----C-CCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNT-------F-----PT----D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~-------~-----~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 66 (197)
+...++|+++|+.++|||||+++|++.. + .+ + ....+.+ ...+.++.....+.+||+|||+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 3457899999999999999999997420 0 00 0 0111112 1223344444678899999999
Q ss_pred CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV-LVGTKQDLREDKQYLINHPGATPITTAQGE 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
+|.......+..+|++++|+|+++....... ..+..+... ++|.+ +++||+|+.+.... .....++..
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~~~~~~i~ 155 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHH-------HHHHHHHHH
Confidence 8876655566788999999999874333322 222333332 57765 68999999753220 001234566
Q ss_pred HHHHHcCC----cEEEEecccCCC
Q 029177 146 ELKKLIGA----AVYIECSSKTQQ 165 (197)
Q Consensus 146 ~~~~~~~~----~~~~~~Sa~~~~ 165 (197)
.+...++. .+++.+||.++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 67776653 589999999874
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=2.1e-17 Score=131.43 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=105.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC-------CC-----CC----C-CCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN-------TF-----PT----D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~-------~~-----~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
...++|+++|++++|||||+++|++. .+ .+ + ....+.+. ....++.....+.|+||||+.+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence 45789999999999999999999862 10 00 0 11111111 1222333335678999999988
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV-LVGTKQDLREDKQYLINHPGATPITTAQGEE 146 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|.......+..+|++++|+|+.+....... .++..+... ++|.+ +++||+|+.++.. ......+++..
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~ 156 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHHH
Confidence 876666677899999999999875433322 233333332 67865 5799999964321 00122345666
Q ss_pred HHHHcCC----cEEEEecccCCC----------CHHHHHHHHHHHHc
Q 029177 147 LKKLIGA----AVYIECSSKTQQ----------NVKTVFDAAIKVVL 179 (197)
Q Consensus 147 ~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 179 (197)
+...++. .+++++||.++. ++.++++.+.+.+.
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 6666643 589999999984 67888888877654
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.6e-17 Score=134.08 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=119.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-------ccCc-C
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSY-R 77 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~-~ 77 (197)
..+|+++|.||||||||.|++++.+ ...++.+.+.+..+..+...+.. +++.|.||........ +..+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3579999999999999999999954 45677788888888888888854 6799999976544321 1123 4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
..|+++-|+|++|.+.--.+ .-++.+. +.|++++.|++|..+... ..-+...+.+.+|. |++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl----tlQLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv 142 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL----TLQLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV 142 (653)
T ss_pred CCCEEEEEcccchHHHHHHH----HHHHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence 57999999999997654333 1222222 789999999999987653 33455788999997 999
Q ss_pred EecccCCCCHHHHHHHHHHHHcCCC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
++||++|+|++++...+.+....+.
T Consensus 143 ~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 143 PTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEeecCCCHHHHHHHHHHhccccc
Confidence 9999999999999999988665544
No 226
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.76 E-value=2.4e-17 Score=119.53 Aligned_cols=171 Identities=11% Similarity=0.113 Sum_probs=99.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee---eeeEEEEECCeEEEEEEEecCCCcCcccc-----cccCcCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD---NFSANVVVDGSTVNLGLWDTAGQEDYNRL-----RPLSYRG 78 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~~~~~ 78 (197)
++||+++|.+|+|||||+|.+.+.........+... ..............+.+||+||....... ....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986543322221110 00000001111236789999997543221 1223667
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCC--CCCccH---HHHHHHHHH--c
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPG--ATPITT---AQGEELKKL--I 151 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~--~ 151 (197)
+|+++++.+ ++ +......|+..+... +.|+++|+||+|+............ ...+.. +...+.... .
T Consensus 81 ~d~~l~v~~--~~--~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS--TR--FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC--CC--CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 898888743 22 333324566666665 6899999999999643221000000 000111 111222222 2
Q ss_pred CCcEEEEeccc--CCCCHHHHHHHHHHHHcCCCC
Q 029177 152 GAAVYIECSSK--TQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 152 ~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~ 183 (197)
..+++|.+|+. .+.++..+.+.++..+...++
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 34578999998 579999999999988865543
No 227
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.2e-18 Score=115.93 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=116.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.=|++++|..|+|||||+++|.+++. ..+.||. .+.+..+.+.+ +.++.+|.+||...+..|..++..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTl-HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTL-HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCc-CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 445899999999999999999999876 3445553 12234455677 8889999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH------HHHHcC------
Q 029177 86 FSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE------LKKLIG------ 152 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------ 152 (197)
+|+.|.+.+.+.+..+...+... ..++|+++.+||+|.... .+.++.+. ++-..+
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a------------~se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA------------ASEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc------------ccHHHHHHHHHHHHHhcccccccccC
Confidence 99999999988855554444433 268999999999999874 23332221 111111
Q ss_pred ----CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 153 ----AAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 153 ----~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
....|.||...+.|.-+.|.|+.+.+
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 12467799998888888888877653
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=5.2e-17 Score=129.76 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=96.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCC----------------CCC-CCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFP----------------TDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 66 (197)
+...++|+++|++++|||||+++|++..-. .+. ...+.+. ....+......+.|.|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence 345799999999999999999999863110 000 1111111 112233333567799999998
Q ss_pred CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGE 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
+|.......+..+|++++|+|+.....-... ..+..+... ++| +|++.||+|+.+.... .....+++.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~-------~~~~~~~l~ 155 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEEL-------LELVELEVR 155 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHHH-------HHHHHHHHH
Confidence 8876666667899999999999875433332 233334333 678 7789999999753320 001224555
Q ss_pred HHHHHcCC----cEEEEecccCCCC
Q 029177 146 ELKKLIGA----AVYIECSSKTQQN 166 (197)
Q Consensus 146 ~~~~~~~~----~~~~~~Sa~~~~~ 166 (197)
.+.+..+. .+++.+||.+|++
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhccc
Confidence 66665553 6899999998863
No 229
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.74 E-value=4e-17 Score=119.82 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=78.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCCC---------------CceeeeeeEEEEEC--------CeEEEEEEEecC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT--FPTDYV---------------PTVFDNFSANVVVD--------GSTVNLGLWDTA 63 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~--~~~~~~---------------~~~~~~~~~~~~~~--------~~~~~~~~~D~~ 63 (197)
+|+++|+.++|||||+.+|+... ...... ..+.......+.++ +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999997532 111000 00000000112222 346889999999
Q ss_pred CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
|+.+|.......++.+|++++|+|+++..+.... ..+.. ... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~-~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQ-ALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHH-HHH--cCCCEEEEEECCCcc
Confidence 9999998888899999999999999988766553 33332 222 268999999999986
No 230
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.74 E-value=5.9e-17 Score=132.38 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=78.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCCC---------------CCCCce----eeeeeEEEEECCeEEEEEEEecC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT---------------DYVPTV----FDNFSANVVVDGSTVNLGLWDTA 63 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~---------------~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~ 63 (197)
.+.-+|+|+|++++|||||+++|+. +.... ++.+.. .+.......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3456899999999999999999974 21100 000000 01111112233334788899999
Q ss_pred CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
|+.+|.......++.+|++++|+|+++...... ..+...... .++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHh--cCCCEEEEEECCcccc
Confidence 999998777778899999999999987643322 333344433 3799999999999865
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=4.7e-17 Score=122.83 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=77.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCC-------CCce------------eeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN--TFPTDY-------VPTV------------FDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~--~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
+|+++|++|+|||||+++|+.. ...... ..++ .+.......++...+.+.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 6999999999999999999852 111000 0000 011112223344457889999999998
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
|.......++.+|++++|+|+++...... ..+...... .++|+++++||+|+...
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 87766677889999999999987644322 233344333 37899999999998653
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.73 E-value=1.2e-16 Score=121.17 Aligned_cols=112 Identities=23% Similarity=0.232 Sum_probs=76.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Cce--------------eeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYV-----PTV--------------FDNFSANVVVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 69 (197)
+|+++|++|+|||||+++++...-..... .++ .......+..++ +.+++|||||+.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 58999999999999999997532110000 000 001111223344 678899999998887
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
..+...+..+|++++|+|+++....... ..| ..+... ++|.++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEECCccCCC
Confidence 7777888999999999999987665443 333 233333 7899999999998754
No 233
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=5.2e-16 Score=117.70 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=91.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC----------CCCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc----
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR---- 70 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---- 70 (197)
-.++|+++|.+|+|||||+|+|++..+... ..++. ...+...+..++..+.+++|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999999766433 22333 233344555677778999999999433211
Q ss_pred ----------------------ccccCcC--CCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 71 ----------------------LRPLSYR--GADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 71 ----------------------~~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
.+...+. .+|+++++++.+... .-.+ ..++..+.. .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D--~~~lk~l~~---~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD--IEFMKRLSK---RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH--HHHHHHHhc---cCCEEEEEECCCcCC
Confidence 1112232 477888888876522 1222 233444443 689999999999965
Q ss_pred chhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
..+. ......+.+.+..+++ ++|.+...
T Consensus 158 ~~e~--------~~~k~~i~~~l~~~~i-~~~~~~~~ 185 (276)
T cd01850 158 PEEL--------KEFKQRIMEDIEEHNI-KIYKFPED 185 (276)
T ss_pred HHHH--------HHHHHHHHHHHHHcCC-ceECCCCC
Confidence 3220 1344556677777776 67766554
No 234
>PRK13351 elongation factor G; Reviewed
Probab=99.72 E-value=6.6e-17 Score=136.91 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=82.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC--C-----------CCC-------CCCceeeeeeEEEEECCeEEEEEEEecC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNT--F-----------PTD-------YVPTVFDNFSANVVVDGSTVNLGLWDTA 63 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~--~-----------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (197)
.++..+|+|+|+.|+|||||+++|+... . ..+ +..+... ....+..+ ...+++||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~-~~~~~~~~--~~~i~liDtP 81 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIES-AATSCDWD--NHRINLIDTP 81 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCccc-ceEEEEEC--CEEEEEEECC
Confidence 3456799999999999999999998521 0 000 0011110 01123333 3788899999
Q ss_pred CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
|+.+|...+..+++.+|++++|+|+++..+.... ..| ..+... ++|+++++||+|+...
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 9999988888899999999999999988776654 444 333333 7899999999998854
No 235
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=4.5e-16 Score=123.86 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=102.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC----------------CC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP----------------TD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
...++|+++|+.++|||||+++|++.... ++ ....+.+. ....+......+.+.||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence 45789999999999999999999863110 00 11111111 1222333335677999999988
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV-LVGTKQDLREDKQYLINHPGATPITTAQGEE 146 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|.......+..+|++++|+|+.+...... ..++..+... ++|.+ +++||+|+.+.... ......+...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~-------~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHHH-------HHHHHHHHHH
Confidence 87666667889999999999987544333 2333444433 68876 57999999643210 0011234444
Q ss_pred HHHHcC----CcEEEEecccCCC----------CHHHHHHHHHHHH
Q 029177 147 LKKLIG----AAVYIECSSKTQQ----------NVKTVFDAAIKVV 178 (197)
Q Consensus 147 ~~~~~~----~~~~~~~Sa~~~~----------~i~~~~~~i~~~~ 178 (197)
+....+ ..+++.+||.++. ++..++++|...+
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 444443 2589999999875 5677777777654
No 236
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.2e-16 Score=110.63 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=101.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCC----------CcCccccccc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRPL 74 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 74 (197)
...-|+++|.+|||||||+|.|++..-......|. .+..-.-+.+++. +.+.|.|| ++.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 44579999999999999999999954211111121 1222222344553 67999999 2223333333
Q ss_pred CcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 75 SYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 75 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+++ +..++++++|+...-...+. .+++.+... ++|+++++||+|...... . .......+...
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~----------~-~k~l~~v~~~l 164 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE----------R-NKQLNKVAEEL 164 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH----------H-HHHHHHHHHHh
Confidence 443 35688899999888776663 566666665 899999999999976532 1 11122222222
Q ss_pred ----CCcE-EEEecccCCCCHHHHHHHHHHHHc
Q 029177 152 ----GAAV-YIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 152 ----~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
...+ ++.+|+.++.|++++...|.+.+.
T Consensus 165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 2211 778999999999999999988664
No 237
>COG2262 HflX GTPases [General function prediction only]
Probab=99.71 E-value=8.9e-16 Score=118.54 Aligned_cols=158 Identities=19% Similarity=0.148 Sum_probs=112.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--c------cccCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--L------RPLSY 76 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~------~~~~~ 76 (197)
....|.++|-.|+|||||+|+|.+. .+..+...++.+.....+.+.+ ...+.+-||-|--+--. + +-.-.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 4568999999999999999999984 4445555666666677777764 24666899999543211 1 11123
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..+|.++.|+|++++...+.+ ......+.... .++|+++|.||+|+..+. .......... +.
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~-~~ 332 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS-PN 332 (411)
T ss_pred hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-CC
Confidence 579999999999999666665 55555565543 579999999999985432 1122222222 25
Q ss_pred EEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
.+.+||++|+|++.+...|...+...
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 88999999999999999999987644
No 238
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=1.5e-16 Score=120.26 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCC-----------C------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS--NTFPT-----------D------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~--~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 69 (197)
+|+++|++|+|||||+++|+. +.... + ....+.......+..++ ..+.+|||||+.+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999974 21100 0 00111111122333444 677899999998888
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
..+...++.+|++++|+|+.+...-... .....+... ++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 8888889999999999999886543332 333344433 689999999999875
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=2.7e-16 Score=127.41 Aligned_cols=156 Identities=15% Similarity=0.093 Sum_probs=93.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCc----------------------eeeeeeEEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPT----------------------VFDNFSANVV 49 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~----------~~~----------------------~~~~~~~~~~ 49 (197)
....++|+++|++++|||||+++|+... ..... ..+ +.+.....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~-- 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY-- 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence 3567999999999999999999997531 11100 000 01111111
Q ss_pred ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177 50 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY 129 (197)
Q Consensus 50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 129 (197)
+......+.|+||||+++|.......+..+|++++|+|++....-... ..+ ..+... ...|+++++||+|+......
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL-GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh-CCCceEEEEEeeccccchhH
Confidence 222335778999999998865555557899999999999765322211 111 111111 12478999999999642210
Q ss_pred hcCCCCCCCccHHHHHHHHHHcC---CcEEEEecccCCCCHHHH
Q 029177 130 LINHPGATPITTAQGEELKKLIG---AAVYIECSSKTQQNVKTV 170 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~ 170 (197)
......++...+....+ ..+++.+||++|+|+.+.
T Consensus 179 ------~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 ------VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ------HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 00011122333334433 358999999999999764
No 240
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=6.1e-16 Score=122.91 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=113.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++--|.++|+-.-|||||+..+-............+ .....++.++. ..-.+.|+|||||+.|..++..-.+-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 344688999999999999999988776555554443 33344555541 2346789999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc--------CCcE
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI--------GAAV 155 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 155 (197)
+|++++|.--.+.. .-++.++. .++|+++++||+|..+.+ ++....-..++ +...
T Consensus 84 LVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~n-------------p~~v~~el~~~gl~~E~~gg~v~ 146 (509)
T COG0532 84 LVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEAN-------------PDKVKQELQEYGLVPEEWGGDVI 146 (509)
T ss_pred EEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCC-------------HHHHHHHHHHcCCCHhhcCCceE
Confidence 99999985433332 11233333 389999999999998632 22222222222 3357
Q ss_pred EEEecccCCCCHHHHHHHHHHHHcC
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++++||++|+|+.+++..+.-.+..
T Consensus 147 ~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 147 FVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999998865543
No 241
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=5.4e-16 Score=117.00 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=112.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-------cccCcCCCc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRGAD 80 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~~~ 80 (197)
-|.+||.|++|||||++.++.. .-..+|..|+..+.--.+.+. ..-.|.+=|+||..+-.+. ....++.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 5789999999999999999984 335677777755444444442 2246789999996442221 222356889
Q ss_pred EEEEEEECCChhh---HHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 81 VFLLAFSLISKAS---YENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 81 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
++++|+|++..+. .++. ......+..+. .+.|.+||+||+|+..+.+ ........+.+..+..
T Consensus 240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE 308 (369)
T ss_pred eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence 9999999987653 4444 55566666665 5789999999999755432 3333444555555543
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
..+.+||.+++|++++...+.+.+...+
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 3333999999999999999998776554
No 242
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=9e-16 Score=123.39 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=99.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC------C----C------CCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN------T----F------PTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~------~----~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
...++|+++|+.++|||||+++|.+. . + .++. ...+.+. ....++.....+.|.||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence 45789999999999999999999631 1 0 0000 1111221 2223333446778999999988
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEE 146 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|.......+..+|++++|+|+++...... ...+..+... ++| ++++.||+|+.+.... .....++..+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~-------~~~i~~~i~~ 205 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEEL-------LELVEMELRE 205 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHH-------HHHHHHHHHH
Confidence 76655555677999999999987543333 2233344433 688 4788999999753210 0011123334
Q ss_pred HHHHcC----CcEEEEeccc---CCCC-------HHHHHHHHHHHHc
Q 029177 147 LKKLIG----AAVYIECSSK---TQQN-------VKTVFDAAIKVVL 179 (197)
Q Consensus 147 ~~~~~~----~~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~ 179 (197)
+....+ .+|++.+|+. ++.| +.++++++.+.+.
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 443332 2578888876 4555 6788888877654
No 243
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.70 E-value=3.5e-16 Score=125.87 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=99.6
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcC--CCCC------------------------CCCCce----eeeeeEEEEECC
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV----FDNFSANVVVDG 52 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~------------------------~~~~~~----~~~~~~~~~~~~ 52 (197)
.+...++|+++|+.++|||||+.+|+.. .... +..+.. .+.......+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 3445789999999999999999988741 1100 000000 000011122334
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHH-------HHHHHHHHHHhhhCCCCC-EEEEeeCCCcc
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE-------NISKKWIPELRHYAPTVP-IVLVGTKQDLR 124 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~ 124 (197)
....+.++|+|||++|.......+..+|++++|+|+++. .++ .....| ..+.. .++| +++++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~-~~~~~--~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHA-LLAFT--LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHH-HHHHH--cCCCcEEEEEEcccCC
Confidence 457888999999999998888889999999999999873 221 121222 22222 2564 78889999986
Q ss_pred cchhhhcCCCCCCCccHHHHHHHHHHcC----CcEEEEecccCCCCHHH
Q 029177 125 EDKQYLINHPGATPITTAQGEELKKLIG----AAVYIECSSKTQQNVKT 169 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 169 (197)
.... .........+++..+..+.+ ..+++++||.+|+|+.+
T Consensus 159 ~~~~----~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKY----SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhh----hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 2110 00000012456677777766 25799999999999853
No 244
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=5.8e-16 Score=116.31 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=112.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc-cccc--------cCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRP--------LSY 76 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~--------~~~ 76 (197)
...|+|.|.||||||||++.+++... ..+|..|+...+..++...+ ..+|++||||.-+-. ...+ .+-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 35799999999999999999998544 45677777666666665555 788999999953211 1100 011
Q ss_pred CCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 77 RGADVFLLAFSLISKA--SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
.-.++++|++|.+..- +.+.. ..++..++..+. .|+++|.||.|..+.. ..+++......-+..
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~~ 311 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEGGE 311 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhccc
Confidence 3468899999998754 45666 556677777765 8999999999997543 223344445555554
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
....+++..+.+++.+-..+...+.+.
T Consensus 312 ~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 312 EPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred cccceeeeehhhHHHHHHHHHHHhhch
Confidence 577889999999998888888776554
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=5.2e-16 Score=124.92 Aligned_cols=159 Identities=15% Similarity=0.063 Sum_probs=97.8
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------CCCCce----eeeeeEEEEE
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------DYVPTV----FDNFSANVVV 50 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~------------------------~~~~~~----~~~~~~~~~~ 50 (197)
|-++...++|+++|+.++|||||+.+|+. +.... +..+.. .+.......+
T Consensus 1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 34556679999999999999999999875 21110 000000 0000111223
Q ss_pred CCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhhCCCCC-EEEEeeCCC
Q 029177 51 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS-------YENISKKWIPELRHYAPTVP-IVLVGTKQD 122 (197)
Q Consensus 51 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 122 (197)
+.....+.|+|+|||.+|.......+..+|++++|+|++.... .... ..| ..+... ++| ++++.||+|
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~-eh~-~~~~~~--gi~~iiv~vNKmD 156 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTR-EHA-LLAFTL--GVKQMIVCINKMD 156 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHH-HHH-HHHHHc--CCCeEEEEEEccc
Confidence 3344788899999999998777777899999999999987531 1111 222 233332 566 678999999
Q ss_pred ccc--chhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHH
Q 029177 123 LRE--DKQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKT 169 (197)
Q Consensus 123 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 169 (197)
... ..+ .......++..++....+. ++++.+|+.+|+|+.+
T Consensus 157 ~~~~~~~~------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 157 DKTVNYSQ------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccchhhH------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 532 110 0000122344444444443 6899999999999864
No 246
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=117.57 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=115.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeee-eEEEEECCeEEEEEEEecCCCcC-------cccccccC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED-------YNRLRPLS 75 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~ 75 (197)
..+++|++.|..|+||||++|+|+.+...+- ..+...+.. .....+++ -.+.+||+||-.+ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 4679999999999999999999997544221 112211111 11122344 4677999999655 55566777
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh-----cCCCCCCCccHHHHHHHHHH
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL-----INHPGATPITTAQGEELKKL 150 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 150 (197)
+...|.++++.+..|+.---+. ..|.+.+.... +.|++++.|.+|...+-..+ .+++..+....+.+..+.+.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCH-HHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765554 45555554432 47999999999988763221 12222222333333332222
Q ss_pred c-CCcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 151 I-GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 151 ~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
. ...|++.+|...+.|++++...++..+....+
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 2 13478888899999999999999998865443
No 247
>PLN03126 Elongation factor Tu; Provisional
Probab=99.68 E-value=8.7e-16 Score=124.16 Aligned_cols=148 Identities=18% Similarity=0.143 Sum_probs=94.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC------CCCC----------CC-CCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN------TFPT----------DY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~------~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
...++|+++|++++|||||+++|+.. .... +. ...+.+.....+..++ ..+.++|+|||++
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence 34789999999999999999999852 1111 00 0111111111222333 5778999999999
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEE 146 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|.......+..+|++++|+|+.+....... .++..+... ++| +++++||+|+...... .....++...
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~~i~~~i~~ 225 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEEL-------LELVELEVRE 225 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHHH-------HHHHHHHHHH
Confidence 877666667889999999999876544432 333344433 678 7789999999753220 0012234555
Q ss_pred HHHHcC----CcEEEEecccCCC
Q 029177 147 LKKLIG----AAVYIECSSKTQQ 165 (197)
Q Consensus 147 ~~~~~~----~~~~~~~Sa~~~~ 165 (197)
+....+ ..+++.+|+.++.
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHhcCCCcCcceEEEEEccccc
Confidence 555542 3589999998874
No 248
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=3.7e-16 Score=124.68 Aligned_cols=151 Identities=16% Similarity=0.103 Sum_probs=92.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC--CCCC-------------CC-------------------CCceeeeeeEEEEECCe
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN--TFPT-------------DY-------------------VPTVFDNFSANVVVDGS 53 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~--~~~~-------------~~-------------------~~~~~~~~~~~~~~~~~ 53 (197)
+||+++|+.++|||||+.+|+.. .... .. ...+.+.....+ ...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~--~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF--STD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE--ccC
Confidence 58999999999999999999742 1111 00 000011111112 223
Q ss_pred EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177 54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH 133 (197)
Q Consensus 54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 133 (197)
...+.|+|+||+++|.......+..+|++++|+|+......... ..+ ..+... ...++++++||+|+......
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~~~~~---- 151 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVDYDEE---- 151 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEecccccchHH----
Confidence 35788999999998876666678899999999999865433322 122 122221 12468899999999642210
Q ss_pred CCCCCccHHHHHHHHHHcCC--cEEEEecccCCCCHHH
Q 029177 134 PGATPITTAQGEELKKLIGA--AVYIECSSKTQQNVKT 169 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 169 (197)
......++...+.+..+. .+++++||.+|+|+++
T Consensus 152 --~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 --VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred --HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 000112333344444443 4799999999999885
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.68 E-value=7.8e-16 Score=113.06 Aligned_cols=166 Identities=19% Similarity=0.278 Sum_probs=101.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeeeeEEEEECCeEEEEEEEecCCCcCccc-----ccccCcCCCcE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYV--PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRGADV 81 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~ 81 (197)
||+++|+.+|||||+.+-++.+-.+.+.. ..+.......+... ..+.+++||+||+..+-. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999999875443322 11111112222222 236899999999976543 34556899999
Q ss_pred EEEEEECCChhhHHHHH--HHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--CcEEE
Q 029177 82 FLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--AAVYI 157 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (197)
+|+|+|+.+.+-.+++. ...+..+.+..|+..+-++..|+|+..+..+. ....-..+...+.+...+ ...++
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~~~~ 155 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDITFF 155 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccceEEE
Confidence 99999998554333330 34456666777999999999999986543200 000001122233333333 24678
Q ss_pred EecccCCCCHHHHHHHHHHHHcC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.+|..+ +.+.+++..+++.+.-
T Consensus 156 ~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 156 LTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp EE-TTS-THHHHHHHHHHHTTST
T ss_pred eccCcC-cHHHHHHHHHHHHHcc
Confidence 888877 7999999999998764
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.68 E-value=1.4e-15 Score=124.44 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=78.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCCC---------------CCCCce----eeeeeEEEEECCeEEEEEEEecC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT---------------DYVPTV----FDNFSANVVVDGSTVNLGLWDTA 63 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~---------------~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~ 63 (197)
.+..+|+|+|++++|||||+++|+. +.... ++.+.. .+.......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4566899999999999999999863 21110 000000 11111223344445788899999
Q ss_pred CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
|+.+|.......++.+|++++|+|+++...... ..+...... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT--RKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECccccC
Confidence 999888766667899999999999987532221 333444433 3789999999999863
No 251
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=7.6e-17 Score=113.65 Aligned_cols=113 Identities=17% Similarity=0.209 Sum_probs=72.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEE--E-CCeEEEEEEEecCCCcCcccccccC---cCCCcEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--V-DGSTVNLGLWDTAGQEDYNRLRPLS---YRGADVF 82 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~~ 82 (197)
.|+++|+.|+|||+|..+|..+.......+. ..... + ....-.+.++|+|||.+.+...... +..+.++
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 6899999999999999999998554333222 22221 1 2233467899999999887644333 7789999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccc
Q 029177 83 LLAFSLIS-KASYENISKKWIPELRHYA---PTVPIVLVGTKQDLRED 126 (197)
Q Consensus 83 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~ 126 (197)
|||+|.+. +..+.+..+++.+.+.... ..+|++|++||+|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999974 4455555355555554433 57999999999998764
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=4.5e-15 Score=114.30 Aligned_cols=80 Identities=24% Similarity=0.241 Sum_probs=53.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEE---------------------ECC-eEEEEEEEecCCC-
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAGQ- 65 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g~- 65 (197)
|+++|.||||||||+++|++.... .++..++.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987542 2333333221111111 122 3368999999997
Q ss_pred ---cCccccccc---CcCCCcEEEEEEECC
Q 029177 66 ---EDYNRLRPL---SYRGADVFLLAFSLI 89 (197)
Q Consensus 66 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 89 (197)
+.+..+... .+++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334433334 378999999999997
No 253
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.3e-14 Score=108.80 Aligned_cols=152 Identities=22% Similarity=0.235 Sum_probs=107.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc-------cccccCcCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-------RLRPLSYRG 78 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~ 78 (197)
.-.+++||.|+||||||++.|++... ..+|..|+.......+.+++ ..+|+.|+||.-.-. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 46899999999999999999998544 45677777777777777777 788999999853221 123345789
Q ss_pred CcEEEEEEECCChhh-HHHHHHHHH----------------------------------------HHHhhh---------
Q 029177 79 ADVFLLAFSLISKAS-YENISKKWI----------------------------------------PELRHY--------- 108 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~--------- 108 (197)
||.+++|+|+....+ .+-+...+. ..++++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986554 322211110 111111
Q ss_pred ----------------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHH
Q 029177 109 ----------------APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172 (197)
Q Consensus 109 ----------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 172 (197)
..-+|.+.|.||.|+.. .+++..+.+.. ..+.+||..+.|++++.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L~e 282 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDELKE 282 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence 01238899999999843 34445555444 688999999999999999
Q ss_pred HHHHHH
Q 029177 173 AAIKVV 178 (197)
Q Consensus 173 ~i~~~~ 178 (197)
.|.+.+
T Consensus 283 ~i~~~L 288 (365)
T COG1163 283 RIWDVL 288 (365)
T ss_pred HHHHhh
Confidence 999876
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=1.9e-15 Score=100.38 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=70.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---------ccccCcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR 77 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~ 77 (197)
+|+++|.+|+|||||+|+|++... .....+++.......+..++. .+.++||||...-.. .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998533 223334443333344556774 446999999643211 1222247
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 029177 78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 120 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 120 (197)
.+|++++|+|.+++.. +.. ..+++.++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 8999999999887433 222 34445553 47999999998
No 255
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.65 E-value=1.5e-15 Score=127.55 Aligned_cols=154 Identities=19% Similarity=0.135 Sum_probs=93.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC----------CCCce----------------------eeeeeEEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD----------YVPTV----------------------FDNFSANVVV 50 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~----------~~~~~----------------------~~~~~~~~~~ 50 (197)
...++|+++|++++|||||+++|+.. ..... ...++ .+.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 45789999999999999999999863 21110 01110 0011111222
Q ss_pred CCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh
Q 029177 51 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL 130 (197)
Q Consensus 51 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 130 (197)
++ ..+.|+||||+++|.......+..+|++++|+|++....-... . ....+... ...|+++++||+|+.+...
T Consensus 102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e-~~~~~~~~-~~~~iivvvNK~D~~~~~~-- 174 (632)
T PRK05506 102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-R-HSFIASLL-GIRHVVLAVNKMDLVDYDQ-- 174 (632)
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-H-HHHHHHHh-CCCeEEEEEEecccccchh--
Confidence 33 4677999999988765555567899999999999765432221 1 11122221 1357889999999964211
Q ss_pred cCCCCCCCccHHHHHHHHHHcCC--cEEEEecccCCCCHHH
Q 029177 131 INHPGATPITTAQGEELKKLIGA--AVYIECSSKTQQNVKT 169 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 169 (197)
........+...+...++. .+++.+||++|+|+.+
T Consensus 175 ----~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 ----EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0000111233344445553 4689999999999874
No 256
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.6e-15 Score=117.82 Aligned_cols=166 Identities=20% Similarity=0.162 Sum_probs=117.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCCC-------------C-CCCce-eeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-------------D-YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~-------------~-~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
++.=++.||-+-.-|||||..+|+. +.... + ..+.+ .......+..+++.+.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3455799999999999999999986 21111 0 11111 111112222346779999999999999
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL 147 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
|.....+.+.-|+++++|+|++..-.....-..| ..+.. +..+|.|.||+|+...+. .-...+..++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~-lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l 204 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFY-LAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL 204 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHH-HHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence 9999999999999999999999987777763333 33332 688999999999987432 0112233344
Q ss_pred HHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177 148 KKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 148 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
....+. +++.+||++|.|+.+++++|++.+.-+.-.
T Consensus 205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 444454 799999999999999999999988665443
No 257
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.5e-15 Score=119.22 Aligned_cols=166 Identities=22% Similarity=0.203 Sum_probs=110.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-c--------ccc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-L--------RPL 74 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~--------~~~ 74 (197)
..++|+++|+||||||||+|.|..... .....+|+.+-....+.++| +.+.+.||+|-.+-.. . ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 458999999999999999999998533 44556677788888888999 7778999999766221 1 112
Q ss_pred CcCCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCCcccchhhhcCCCCCC-CccHHHH
Q 029177 75 SYRGADVFLLAFSLISK--ASYENISKKWIPELRHYA-------PTVPIVLVGTKQDLREDKQYLINHPGAT-PITTAQG 144 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~~~~~~ 144 (197)
.+..+|++++|+|+... ++-..+ ...+....... ...|++++.||.|+..+-. .... ++....+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~-----~~~~~~~~~~~~ 418 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP-----EMTKIPVVYPSA 418 (531)
T ss_pred HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCccc-----cccCCceecccc
Confidence 35789999999999443 332332 33333333322 2379999999999976521 0000 0111111
Q ss_pred HHHHHHc-CCcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 145 EELKKLI-GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 145 ~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
... ....+.++|+++++|++.+.+.+...+.....
T Consensus 419 ----~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 419 ----EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ----ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 111 12245679999999999999999887654433
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.63 E-value=9.1e-15 Score=123.82 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=81.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC--CCC-----C------------CCCCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSN--TFP-----T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~--~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 64 (197)
..+..+|+++|++++|||||+++|+.. ... . .....+.......+..++ ..+.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 346678999999999999999999752 110 0 011111122222334444 6778999999
Q ss_pred CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
+.+|...+...++.+|++++|+|+.+....... ..+..+... ++|+++++||+|+...
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 988877777788999999999999887554443 233334433 6899999999998753
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=9.5e-15 Score=123.73 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=81.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCC-----CC------------CCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFP-----TD------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
++.-+|+|+|++++|||||+++|+. +... .. ...++.......+..++ ..+.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence 4456899999999999999999974 1110 00 01111122223344444 67889999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
.++...+...++.+|++++|+|+++....... ..| ..+... ++|+++++||+|+..
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~~--~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVW-RQANRY--EVPRIAFVNKMDKTG 141 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 98887778889999999999999987655543 333 334433 689999999999975
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.61 E-value=1e-13 Score=100.41 Aligned_cols=163 Identities=19% Similarity=0.158 Sum_probs=100.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC---CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----------cc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 73 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 73 (197)
++|+++|.+|+|||||+|.+++....... .+.+.........+++ ..+.++||||-.+.... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999986432221 1222222233334455 56789999996543210 11
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP---TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL 150 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
....++|++++|+++.+ .+-.+ ...++.+...+. -.+++++.|+.|........ +.. .-.....+.+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~--~~~--~~~~~~l~~l~~~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLE--DYL--ENSCEALKRLLEK 151 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHH--HHH--HhccHHHHHHHHH
Confidence 23467899999999887 33333 344455554432 25788999999976532100 000 0012455667777
Q ss_pred cCCcEEEEec-----ccCCCCHHHHHHHHHHHHcC
Q 029177 151 IGAAVYIECS-----SKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 151 ~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~ 180 (197)
.+. .++.++ +..+.++.++++.+.+.+..
T Consensus 152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 665 454444 45678899999999887753
No 261
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.60 E-value=1.5e-14 Score=116.38 Aligned_cols=166 Identities=15% Similarity=0.115 Sum_probs=102.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCC-Cce-eeeeeEE-----------E---EECC-------------
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYV-PTV-FDNFSAN-----------V---VVDG------------- 52 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~---~~~~~~~-~~~-~~~~~~~-----------~---~~~~------------- 52 (197)
...++|.++|+-..|||||+..|.+- ++.++.. ..+ ...|... . ..+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999862 2222111 111 0000000 0 0000
Q ss_pred ---eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh
Q 029177 53 ---STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK-ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128 (197)
Q Consensus 53 ---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 128 (197)
....+.|+|+|||++|.......+..+|++++|+|+++. ...... ..+ ..+... .-.|++++.||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccCHHH
Confidence 013678999999999877666667899999999999874 222222 222 222211 1246899999999975321
Q ss_pred hhcCCCCCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 129 YLINHPGATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
. ....++..++.... ...+++.+||++|+|++++++.|...+..+
T Consensus 189 ~--------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 189 A--------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred H--------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 0 01112333333221 245899999999999999999999766543
No 262
>PRK00007 elongation factor G; Reviewed
Probab=99.59 E-value=1.7e-14 Score=122.19 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=79.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCC-----C------------CCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFP-----T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
++..+|+++|++++|||||+++|+. +... . .....+.+.....+.+.+ ..+.++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 4567999999999999999999974 2110 0 011111222223344444 67889999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
.+|.......++.+|++++|+|+.......+. ..| ..+... ++|.++++||+|+.+
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~-~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVW-RQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 88766666678899999999998877555543 333 334333 689999999999874
No 263
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.9e-14 Score=111.26 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=100.7
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCC---------------C---------C----CCceeeeeeEEEEE
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPT---------------D---------Y----VPTVFDNFSANVVV 50 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~---------------~---------~----~~~~~~~~~~~~~~ 50 (197)
|+.....++++++|+..+|||||+-+|+.. .++. + . .....+.......+
T Consensus 1 ~~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f 80 (428)
T COG5256 1 MASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF 80 (428)
T ss_pred CCCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe
Confidence 455667899999999999999999888752 2211 0 0 00001111122233
Q ss_pred CCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHH--H--HHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 51 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI--S--KKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 51 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~--~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
+-..+.+++.|+|||.+|-...-.-.++||++|+|+|+.+.+.-... . .+-...+.+...-..+|++.||+|+.+-
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccccc
Confidence 34447899999999999988888888999999999999887411110 0 0001111111122357889999999862
Q ss_pred hhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHH
Q 029177 127 KQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTV 170 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 170 (197)
++ ........+...+.+..|. ++|+++|+..|+|+.+.
T Consensus 161 de------~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 161 DE------ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CH------HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 21 0001122333445555553 46999999999998653
No 264
>PRK12740 elongation factor G; Reviewed
Probab=99.58 E-value=1.5e-14 Score=122.39 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=73.5
Q ss_pred ECCCCCCHHHHHHHHhcC--CCCC-----------CC------CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc
Q 029177 13 VGDGAVGKTCMLISYTSN--TFPT-----------DY------VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 73 (197)
Q Consensus 13 vG~~~~GKstli~~l~~~--~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 73 (197)
+|++++|||||+++|+.. .... ++ ...+.......+...+ +.+.+|||||+.+|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999642 1100 00 0000111112333444 7888999999988877777
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
..+..+|++++++|+++....... ..| ..+... ++|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHHc--CCCEEEEEECCCCCCC
Confidence 788999999999999987665554 333 333332 7899999999998743
No 265
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=7e-14 Score=109.65 Aligned_cols=164 Identities=19% Similarity=0.219 Sum_probs=115.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCC-------------C-CCC-cee-eeeeEEEEE-CCeEEEEEEEecCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPT-------------D-YVP-TVF-DNFSANVVV-DGSTVNLGLWDTAGQ 65 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~-------------~-~~~-~~~-~~~~~~~~~-~~~~~~~~~~D~~g~ 65 (197)
.+.=+..++-+-.-|||||..|++.. .+.. + ..+ |+. ......... ++++|.+.++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34446889999999999999999862 2211 0 111 111 111111222 568899999999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE 145 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
-+|+-...+.+.-|-++++++|++..-....+...| ..+.. +.-++-|.||+||.... +..-.+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y-lAle~---~LeIiPViNKIDLP~Ad------------pervk~ 150 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALEN---NLEIIPVLNKIDLPAAD------------PERVKQ 150 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHH-HHHHc---CcEEEEeeecccCCCCC------------HHHHHH
Confidence 999998888999999999999999987666663333 33333 67888899999998742 222334
Q ss_pred HHHHHcCC--cEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177 146 ELKKLIGA--AVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 146 ~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
+..+-.|. ...+.+||++|.|+++++++|++.+..+...
T Consensus 151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 45555553 3468899999999999999999998766543
No 266
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.2e-14 Score=101.52 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=101.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcC---CCcEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFLL 84 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i~ 84 (197)
=.|+++|+.++|||+|..+|..+.+.....+. ..-.....+.+. .+.++|.|||++.+.....+++ ++-+++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 36999999999999999999988543322222 112233334443 3779999999987765555554 7899999
Q ss_pred EEECCC-hhhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccchhhh------------------------cCCCCC
Q 029177 85 AFSLIS-KASYENISKKWIPELRHY---APTVPIVLVGTKQDLREDKQYL------------------------INHPGA 136 (197)
Q Consensus 85 v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~------------------------~~~~~~ 136 (197)
|+|..- .....+....+.+.+... ...+|++|++||.|+.-..... ..+...
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 998754 334445535555555544 2578999999999987432110 000000
Q ss_pred CCccHHHHHH--HHHHc-CCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 137 TPITTAQGEE--LKKLI-GAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 137 ~~~~~~~~~~--~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
.....+++.. |.+-- ..+.|.+.|++++ +++++-+|+...
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0111111111 22211 2346788999988 899999998764
No 267
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.57 E-value=1.3e-13 Score=110.40 Aligned_cols=163 Identities=23% Similarity=0.308 Sum_probs=123.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.+.+++.++|+.++|||.+++.|.++.+..++..++...+ ...+...++...+.+-|++-. ........- ..||++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 4689999999999999999999999999887766664444 445556677778888888765 222121112 6799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
++||.+++.+|... ....+.-... ..+|+++|++|+|+.+..+ ....+-.+++++++..+.+.+|.+.
T Consensus 501 ~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q----------~~~iqpde~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ----------RYSIQPDEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred EecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh----------ccCCChHHHHHhcCCCCCeeeccCC
Confidence 99999999999998 3333322222 5899999999999987653 1222227899999998899999996
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 029177 164 QQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~~ 182 (197)
... .++|..|...+..+.
T Consensus 569 ~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCC-chHHHHHHHhhhCCC
Confidence 434 999999999998877
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=1.3e-13 Score=112.61 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=74.5
Q ss_pred EEEEEecCCCcCc-----ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh
Q 029177 56 NLGLWDTAGQEDY-----NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL 130 (197)
Q Consensus 56 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 130 (197)
.+.|.||||-... .......+..+|++++|+|.++..+..+ ..+...+.....+.|+++|+||+|+.+...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dree-- 306 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNS-- 306 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCccc--
Confidence 4568899996432 1123346889999999999988655555 245555655433469999999999854221
Q ss_pred cCCCCCCCccHHHHHHHHHH------cCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 131 INHPGATPITTAQGEELKKL------IGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
...+....+... .....+|++||+.|.|++++++.+.+.
T Consensus 307 --------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 --------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred --------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 123334444321 124468999999999999999999873
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.56 E-value=5e-14 Score=103.50 Aligned_cols=172 Identities=19% Similarity=0.188 Sum_probs=98.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCC-------CCCce-eeeeeEEEEEC-------------------------
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD-------YVPTV-FDNFSANVVVD------------------------- 51 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~-------~~~~~-~~~~~~~~~~~------------------------- 51 (197)
.++.-|+++|..|+|||||++||........ -.|.. ...|...+.++
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 3567899999999999999999976322111 11111 12222222221
Q ss_pred ----------------CeEEEEEEEecCCCc-CcccccccC-------cCCCcEEEEEEECCChh---hHHHHHHHHHHH
Q 029177 52 ----------------GSTVNLGLWDTAGQE-DYNRLRPLS-------YRGADVFLLAFSLISKA---SYENISKKWIPE 104 (197)
Q Consensus 52 ----------------~~~~~~~~~D~~g~~-~~~~~~~~~-------~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~ 104 (197)
.......++|||||. .|.+..... ....-++++++|..... +|-...-+--..
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 123557799999985 444332222 12345777888864433 333321111223
Q ss_pred HhhhCCCCCEEEEeeCCCcccchhhh------------c---CCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHH
Q 029177 105 LRHYAPTVPIVLVGTKQDLREDKQYL------------I---NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKT 169 (197)
Q Consensus 105 ~~~~~~~~p~iiv~nK~D~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 169 (197)
+.+ ..+|++++.||.|+.+..-.. + .+.....+......-+..-|.....+-+||.+|+|.++
T Consensus 177 lyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 177 LYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred HHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 333 389999999999998764210 0 00111111222222333344556788999999999999
Q ss_pred HHHHHHHHH
Q 029177 170 VFDAAIKVV 178 (197)
Q Consensus 170 ~~~~i~~~~ 178 (197)
+|..+-+.+
T Consensus 255 f~~av~~~v 263 (366)
T KOG1532|consen 255 FFTAVDESV 263 (366)
T ss_pred HHHHHHHHH
Confidence 999887655
No 270
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.56 E-value=1.2e-13 Score=106.93 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=87.7
Q ss_pred EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCC
Q 029177 54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENISKKWIPELRHYA-PTVPIVLVGTKQD 122 (197)
Q Consensus 54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D 122 (197)
.+.+.+||++|+...+..|.+++.+++++++|+|+++. ..+.+....|...+.... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 36788999999999999999999999999999999985 345555455555554433 6899999999999
Q ss_pred cccchhhh------cCCCCCCCccHHHHHHHHHH-----c----CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 123 LREDKQYL------INHPGATPITTAQGEELKKL-----I----GAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 123 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+....-.. .++.....-..+.+..+... . ..+..+.++|.+-++++.+|+.+.+.++..
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 76543211 11111112233444443332 1 222345689999999999999998877643
No 271
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.5e-13 Score=109.33 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=108.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+=-|-++|+..-|||||+..|-+........+.++... ...+...+. -.++|.|||||..|..++..-..-.|++++|
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 33567889999999999999987655443333332222 334444432 5677999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-H-------HHHHcCCcEEE
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-E-------LKKLIGAAVYI 157 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~ 157 (197)
+.+.|.--.... .-++..+. .++|+|+..||+|..+.. ++.+. + ..+--|.++++
T Consensus 232 VAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GGdVQvi 294 (683)
T KOG1145|consen 232 VAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGGDVQVI 294 (683)
T ss_pred EEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCCceeEE
Confidence 998885433332 11122222 489999999999987632 22222 2 22233567899
Q ss_pred EecccCCCCHHHHHHHHHHHH
Q 029177 158 ECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
++||++|+|++.+-+++.-.+
T Consensus 295 piSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 295 PISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EeecccCCChHHHHHHHHHHH
Confidence 999999999999998887655
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.55 E-value=1.8e-13 Score=108.47 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=55.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEE---------------------ECC-eEEEEEEEecCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAG 64 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g 64 (197)
++|+++|.||||||||+|+|++..... ++..++.+.....+. .++ ....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999865532 444343222222111 111 236789999999
Q ss_pred Cc----CcccccccC---cCCCcEEEEEEECC
Q 029177 65 QE----DYNRLRPLS---YRGADVFLLAFSLI 89 (197)
Q Consensus 65 ~~----~~~~~~~~~---~~~~~~~i~v~d~~ 89 (197)
.. ....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 223333334 78999999999997
No 273
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.55 E-value=1.4e-13 Score=103.44 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=114.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEE--EECCeEEEEEEEecCCCcCcccccccCcCC---C-cE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV--VVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---A-DV 81 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---~-~~ 81 (197)
-+|+|+|+.++|||||+.+|.+-.-... .....+....+ ..++....+.+|-..|.--...+..+.+.. + -.
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~Kk--gsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETVKK--GSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccccCC--CCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 3799999999999999999987542222 12122222222 223344677799888876554444444432 2 36
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCC---------------------------------------------------
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYAP--------------------------------------------------- 110 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------------------------------------------------- 110 (197)
+|++.|+++++..-+..++|...+.++..
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 77899999997755544888766554420
Q ss_pred -----------CCCEEEEeeCCCccc----chhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHH
Q 029177 111 -----------TVPIVLVGTKQDLRE----DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAI 175 (197)
Q Consensus 111 -----------~~p~iiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 175 (197)
++|+++|+||+|... ..++...+. -......+.||.++|+ ..|.+|+++..|++-++..|.
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehf---dfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHF---DFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHH---HHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHH
Confidence 238999999999732 111000000 1344567889999998 799999999999999999999
Q ss_pred HHHcCCCCc
Q 029177 176 KVVLQPPKP 184 (197)
Q Consensus 176 ~~~~~~~~~ 184 (197)
...+.....
T Consensus 287 hr~yG~~ft 295 (473)
T KOG3905|consen 287 HRSYGFPFT 295 (473)
T ss_pred HHhcCcccC
Confidence 988765544
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.54 E-value=1.4e-14 Score=94.01 Aligned_cols=137 Identities=23% Similarity=0.191 Sum_probs=97.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc----CcccccccCcCCCcEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~ 84 (197)
|++++|..|+|||||.+.+.+... .+..|. -+.++++. .+||||.- .+.+-.......+|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQ------Ave~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQ------AVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccc------eeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 799999999999999999988643 222222 12233321 57899842 222222234578999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|-.+++++|.-.. -+... -..|+|-|.+|.|+.++ -..+....|..+-|..++|++|+.++
T Consensus 71 v~~and~~s~f~p--~f~~~-----~~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 71 VHAANDPESRFPP--GFLDI-----GVKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eecccCccccCCc--ccccc-----cccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence 9999999774442 22211 13569999999999864 34467788999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 029177 165 QNVKTVFDAAIK 176 (197)
Q Consensus 165 ~~i~~~~~~i~~ 176 (197)
.|++++++.+..
T Consensus 132 ~gv~~l~~~L~~ 143 (148)
T COG4917 132 QGVEELVDYLAS 143 (148)
T ss_pred ccHHHHHHHHHh
Confidence 999999998865
No 275
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.52 E-value=2.3e-13 Score=117.83 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=94.2
Q ss_pred CHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCe-----------E-----EEEEEEecCCCcCcccccccCcCCCcE
Q 029177 19 GKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGS-----------T-----VNLGLWDTAGQEDYNRLRPLSYRGADV 81 (197)
Q Consensus 19 GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~-----~~~~~~D~~g~~~~~~~~~~~~~~~~~ 81 (197)
+||||+..+.+..........++.... ..+..+.. . -.+.|||||||+.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999987665544444322221 22222210 0 127899999999998887778888999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCc------cHHHH--------
Q 029177 82 FLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPI------TTAQG-------- 144 (197)
Q Consensus 82 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~-------- 144 (197)
+++|+|+++ +.+++.+ ..+... ++|+++|+||+|+..........+....+ ...+.
T Consensus 553 vlLVVDa~~Gi~~qT~e~I-----~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI-----NILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHH-----HHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 4444443 233332 68999999999986421100000000000 00000
Q ss_pred HHH-------------HHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 145 EEL-------------KKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 145 ~~~-------------~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
.++ .+-.+.++++++||++|+|+++++.++....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 001 1113456899999999999999998886544
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=2.8e-14 Score=121.20 Aligned_cols=117 Identities=18% Similarity=0.075 Sum_probs=79.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC---------------CCCCC---CCCcee-eeeeEEEEECCeEEEEEEEecCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN---------------TFPTD---YVPTVF-DNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~---------------~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
.+..+|+++|+.++|||||+++|+.. .+... ...|.. .........++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45568999999999999999999752 11111 001111 111112234556688999999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
.+|.......++.+|++++|+|+.+....... ..|.. ... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQ-ALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHH-HHH--cCCCEEEEEEChhccc
Confidence 99887777889999999999999875443332 22322 222 2678899999999864
No 277
>PRK13768 GTPase; Provisional
Probab=99.48 E-value=3.4e-13 Score=101.24 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=72.1
Q ss_pred EEEEEecCCCcCcc---cccccCc---CC--CcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 56 NLGLWDTAGQEDYN---RLRPLSY---RG--ADVFLLAFSLISKASYENIS-KKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 56 ~~~~~D~~g~~~~~---~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
.+.+||+||+.+.. ..+..++ .. .+++++++|++...+..+.. ..|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 57799999986632 2322222 22 88999999997655433321 2233222222247999999999998765
Q ss_pred hhhhc-CCCCCC----------Ccc--HHHHH---HHHHHcC-CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 127 KQYLI-NHPGAT----------PIT--TAQGE---ELKKLIG-AAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 127 ~~~~~-~~~~~~----------~~~--~~~~~---~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
..... ...... ... ..-.+ +..+..+ ..+++.+|+++++|++++.++|.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 32110 000000 000 00111 1122333 347899999999999999999988764
No 278
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.47 E-value=5.9e-14 Score=110.62 Aligned_cols=171 Identities=16% Similarity=0.051 Sum_probs=119.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----ccc-----ccCcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLR-----PLSYR 77 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~-----~~~~~ 77 (197)
-.++|+|-|+||||||++.+..... ...|..|+...+..++.... ..+|+.||||.-+.. ... ....+
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 3689999999999999998887544 34555666666665554444 788999999954321 111 11123
Q ss_pred CCcEEEEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH--HHHHHHHcCC
Q 029177 78 GADVFLLAFSLISK--ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ--GEELKKLIGA 153 (197)
Q Consensus 78 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 153 (197)
--.+++++.|++.. -|.... -.++..++..+.+.|.|+|+||+|+-.... +..+. ..+....-+.
T Consensus 247 LraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDDGN 315 (620)
T ss_pred hhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhccC
Confidence 33578899998764 455555 456677777778999999999999876543 44433 2333344454
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCCCcccccCCC
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKRKRKA 191 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~k~ 191 (197)
++++++|..+.+|+-++-...+..++..+-..+.+.++
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~ 353 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSES 353 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhhh
Confidence 68999999999999999999998888777766655443
No 279
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.47 E-value=2.5e-12 Score=103.47 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=113.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEE--CCeEEEEEEEecCCCcCcccccccCcCCC----c
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGA----D 80 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~----~ 80 (197)
-.|+|+|..++|||||+.+|.+.. .+.++....|.. .+.- .+....+.+|-..|...+..+....+... -
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 379999999999999999987642 333343333322 2221 12335678999988777777766666432 3
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC---------------------------------------------------
Q 029177 81 VFLLAFSLISKASYENISKKWIPELRHYA--------------------------------------------------- 109 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------------------------- 109 (197)
.+++|.|.+.|+.+-+....|+..++.+.
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 78889999999765433344442222110
Q ss_pred ------------CCCCEEEEeeCCCcccchhhhc-CCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177 110 ------------PTVPIVLVGTKQDLREDKQYLI-NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 110 ------------~~~p~iiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
-++|++||++|+|....-+... ...+.--+...-.+.+|-.||+ .+|.+|++...+++-++..|..
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHH
Confidence 0259999999999764321100 0000001333557889999998 7888999999999999999998
Q ss_pred HHcCCCCc
Q 029177 177 VVLQPPKP 184 (197)
Q Consensus 177 ~~~~~~~~ 184 (197)
.+......
T Consensus 262 ~l~~~~f~ 269 (472)
T PF05783_consen 262 RLYGFPFK 269 (472)
T ss_pred HhccCCCC
Confidence 88776654
No 280
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.46 E-value=1.8e-14 Score=106.95 Aligned_cols=122 Identities=20% Similarity=0.119 Sum_probs=60.8
Q ss_pred EEEEEecCCCcCcccccccCc--------CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccc
Q 029177 56 NLGLWDTAGQEDYNRLRPLSY--------RGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126 (197)
Q Consensus 56 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~ 126 (197)
.+.++|||||.++...+.... ...-++++++|.....+.......++..+.... -+.|.+.|.||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 577999999987654433322 345588889998655442222122222222211 27999999999999873
Q ss_pred hhhhcC-------------CCCCCCccHHHHHHHHHHcCCc-EEEEecccCCCCHHHHHHHHHHHH
Q 029177 127 KQYLIN-------------HPGATPITTAQGEELKKLIGAA-VYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 127 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
...... ... .....+...++...++.. +++.+|+.+++|+++++..+-+..
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~-~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESD-YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT--HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210000 000 000111222333344555 899999999999999999887754
No 281
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.46 E-value=1.8e-12 Score=93.90 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=63.3
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE--EEEeeCCCcccchhhhcC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI--VLVGTKQDLREDKQYLIN 132 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--iiv~nK~D~~~~~~~~~~ 132 (197)
....+.++.|..-.....+ .-+|.++.|+|+.+.++... .+. +++.. ++++||+|+.....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~---- 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG---- 154 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc----
Confidence 3455777777321111111 12688999999997666322 111 13334 88899999974211
Q ss_pred CCCCCCccHHHHHHHHHH-cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 133 HPGATPITTAQGEELKKL-IGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
...+...+..+. .+..+++++||++|+|++++|+++.+.+.
T Consensus 155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 122333333333 34568999999999999999999997664
No 282
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.46 E-value=7.6e-13 Score=98.84 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=77.2
Q ss_pred cCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
+++..+.+.++.++|++++|||++++. ++..+ .+|+..+.. .++|+++|+||+|+.+... +..+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence 577888888999999999999999887 78888 888876654 4899999999999965432 333444
Q ss_pred HHHHHHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177 145 EELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 145 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
..+. ..+. +++++||++|+|++++|+.+..
T Consensus 91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 4444 4665 8999999999999999988764
No 283
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.45 E-value=1.5e-12 Score=101.66 Aligned_cols=127 Identities=16% Similarity=0.149 Sum_probs=85.8
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCc
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENISKKWIPELRHYA-PTVPIVLVGTKQDL 123 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~ 123 (197)
..+.+||.+|+...+..|.+++.++++++||+|+++. ..+.+....|...+.... .+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5678999999999999999999999999999999974 345555455555554332 68999999999998
Q ss_pred ccchhhh-----cCCCCCCCccHHHHHHHHHH-----c-----CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 124 REDKQYL-----INHPGATPITTAQGEELKKL-----I-----GAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 124 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
....-.. ..+........+.+..+... . ....++.++|.+-.++..+|+.+...+++.
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 7543111 01111111233444433221 1 123345688999999999999888877543
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.43 E-value=3.2e-12 Score=95.49 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=73.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---c-------c
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R 72 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~ 72 (197)
...++|+++|.+|||||||+|++++..... ...+++..........++ ..+.+|||||-.+... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 356899999999999999999999865422 222333322223334455 5678999999764421 0 1
Q ss_pred ccCc--CCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccch
Q 029177 73 PLSY--RGADVFLLAFSLISKA-SYENISKKWIPELRHYAP---TVPIVLVGTKQDLREDK 127 (197)
Q Consensus 73 ~~~~--~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~ 127 (197)
..++ ...|++++|..++... ...+ ...++.+...+. -.++++|.||+|...+.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 1122 2578888887665432 2222 234444444331 24799999999987543
No 285
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.43 E-value=4.1e-12 Score=96.58 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=70.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc-------cCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSY 76 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~ 76 (197)
..++|+++|.+|+||||++|++++.... ....+.+..........++ ..++++||||..+...... .++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 5789999999999999999999986531 1222222111112223444 6788999999765421111 111
Q ss_pred --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCccc
Q 029177 77 --RGADVFLLAFSLISKASYENISKKWIPELRHYAP---TVPIVLVGTKQDLRE 125 (197)
Q Consensus 77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~ 125 (197)
...|++++|.+++... +.......+..+...+. -.++|++.|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2689999996654321 11111233444444331 247899999999764
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.41 E-value=1.6e-11 Score=90.71 Aligned_cols=169 Identities=17% Similarity=0.093 Sum_probs=92.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
....|+++|++|+|||||++.+.+..-........+. + .+. ......+.++|+||.. .. ....++.+|+++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~-~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllv 110 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVV-TGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLL 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEE-ecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEE
Confidence 3567999999999999999999864211110000011 1 111 1233567799999853 11 12235789999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccchhhhcCCCCCCCccHHHHHH-HH-HHcCCcEEEEeccc
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDKQYLINHPGATPITTAQGEE-LK-KLIGAAVYIECSSK 162 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~Sa~ 162 (197)
+|.+....... ..++..+... +.|. ++|+||.|+.++... . ....+..+. +. ......+++.+||+
T Consensus 111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~------~-~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT------L-RKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH------H-HHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 99986554433 2344444443 5775 459999998643210 0 001112222 22 12344589999999
Q ss_pred CCC--CHHHHHHHHHHHHcCCCCcccccCCCCC
Q 029177 163 TQQ--NVKTVFDAAIKVVLQPPKPKKRKRKARP 193 (197)
Q Consensus 163 ~~~--~i~~~~~~i~~~~~~~~~~~~~~~k~~~ 193 (197)
++- ...+. ..+.+.+-....+.-.-+..++
T Consensus 180 ~~~~~~~~e~-~~~~r~i~~~~~~~~~~r~~r~ 211 (225)
T cd01882 180 VHGRYPKTEI-HNLARFISVMKFRPLNWRNSHP 211 (225)
T ss_pred cCCCCCHHHH-HHHHHHHHhCCCCCCeeecCCC
Confidence 873 33443 2334444333333333333333
No 287
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=9e-12 Score=94.54 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=109.4
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhc----CCCCCCCCCce----eeeeeEEEE-------ECCeEEEEEEEecCCC
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTS----NTFPTDYVPTV----FDNFSANVV-------VDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~----~~~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~D~~g~ 65 (197)
|-+....+++.++|+-.+|||||.+++.. ..|.....+++ .+.--..+. -.++...+.+.|+|||
T Consensus 1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH 80 (522)
T ss_pred CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence 44556679999999999999999999986 23433333332 111111111 1456688999999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE 145 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
...-...-....-.|..++|+|+...-.-..+....+..+-. ...++|.||.|.....++ .....+.+.
T Consensus 81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c----~klvvvinkid~lpE~qr-------~ski~k~~k 149 (522)
T KOG0461|consen 81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC----KKLVVVINKIDVLPENQR-------ASKIEKSAK 149 (522)
T ss_pred HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc----cceEEEEeccccccchhh-------hhHHHHHHH
Confidence 765443333344568999999998765555542233333332 246777788887654220 011222233
Q ss_pred HHHHHc------CCcEEEEecccCC----CCHHHHHHHHHHHHcCCCCcc
Q 029177 146 ELKKLI------GAAVYIECSSKTQ----QNVKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 146 ~~~~~~------~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~~~ 185 (197)
.+.+.+ +..|++++||..| +++.++.+.+..++..+.+..
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 333322 3468999999999 889999998888887766654
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.39 E-value=8.1e-13 Score=114.03 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=80.8
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCC--CCCC---------CCC------ceeeeeeEEEEE--------------C
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNT--FPTD---------YVP------TVFDNFSANVVV--------------D 51 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~--~~~~---------~~~------~~~~~~~~~~~~--------------~ 51 (197)
+.++.-+|+|+|+.++|||||+++|+... .... +.+ .+.......+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 34456689999999999999999998532 1110 000 000000011111 1
Q ss_pred CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 52 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 52 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
+..+.+.++|||||.+|.......++.+|++++|+|+...-..... ..|...... ++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE---RIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHHC---CCCEEEEEECCccc
Confidence 2357788999999999988888888999999999999887555443 444443333 78999999999987
No 289
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.39 E-value=7.5e-12 Score=83.71 Aligned_cols=113 Identities=27% Similarity=0.379 Sum_probs=78.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
+|++++|+.|+|||+|+.++....+...+. ++.. +........+.++.+++|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998877754432 2222 2222334567789999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177 87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ 165 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (197)
+.+++++++.. |...+.... .++|.++++||.|+.+... +..++.. +++++|+++++
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~ 112 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE 112 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence 99999998764 555554433 4788999999999844211 3322222 35567888888
Q ss_pred CHH
Q 029177 166 NVK 168 (197)
Q Consensus 166 ~i~ 168 (197)
|+.
T Consensus 113 ~~~ 115 (124)
T smart00010 113 EGE 115 (124)
T ss_pred hhh
Confidence 874
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=1e-12 Score=113.21 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=79.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCce-------------eeee--eEEEEEC--------CeEEEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV-------------FDNF--SANVVVD--------GSTVNLG 58 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~-------------~~~~--~~~~~~~--------~~~~~~~ 58 (197)
.++.-+|+++|+.++|||||+++|+.. ........++ .+.. ...+.+. +..+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 445668999999999999999999862 1111100000 0000 0111222 2246788
Q ss_pred EEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 59 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 59 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
++||||+.+|.......++.+|++++|+|+.+.-..... ..|. .+... ++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~-~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLR-QALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHH-HHHHc--CCCEEEEEEChhhh
Confidence 999999999888778888999999999999886554443 3443 33332 68999999999997
No 291
>PTZ00258 GTP-binding protein; Provisional
Probab=99.38 E-value=2.2e-11 Score=95.86 Aligned_cols=85 Identities=19% Similarity=0.132 Sum_probs=57.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEecCCCcCc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY 68 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 68 (197)
...++|++||.||||||||+|+|.+... ..++..++.+.....+.+.+. ...++++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 3568999999999999999999987543 334555554444444444332 134889999996432
Q ss_pred ccc-------cccCcCCCcEEEEEEECC
Q 029177 69 NRL-------RPLSYRGADVFLLAFSLI 89 (197)
Q Consensus 69 ~~~-------~~~~~~~~~~~i~v~d~~ 89 (197)
.+. ....++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 211 112357899999999973
No 292
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.38 E-value=7.9e-12 Score=106.68 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=77.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC---------CCCc------eeeeeeEEE--EECCeEEEEEEEecCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---------YVPT------VFDNFSANV--VVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~---------~~~~------~~~~~~~~~--~~~~~~~~~~~~D~~g~ 65 (197)
++.-+|+++|+.++|||||+.+|+.. ..... +.+. +...-...+ ..++..+.+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 34457999999999999999999752 11110 0000 000000111 22444578889999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
.+|.......++.+|++++|+|+......... ..|...... +.|.++++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALRE---RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHHc---CCCeEEEEECchhhc
Confidence 99987777788999999999998876544443 344333222 568899999999863
No 293
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.2e-12 Score=105.89 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=112.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEE-E------------CCe----EEEEEEEecCCCcCcccc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-V------------DGS----TVNLGLWDTAGQEDYNRL 71 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~-~------------~~~----~~~~~~~D~~g~~~~~~~ 71 (197)
-|+|+|+..+|||-|+..+.+........+.+...+..++. . +++ .=-+.++|||||+.|..+
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl 556 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL 556 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence 48999999999999999998865544433333222221111 0 111 113568999999999999
Q ss_pred cccCcCCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh-------hhcCCCCCCCcc-
Q 029177 72 RPLSYRGADVFLLAFSLISK---ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ-------YLINHPGATPIT- 140 (197)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-------~~~~~~~~~~~~- 140 (197)
..+....||++|+|+|+.+. .+++.+ ..++.. +.|+||+.||+|....-. ..........+.
T Consensus 557 RsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 557 RSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhccccccceEEEEeehhccCCcchhHHH-----HHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 99999999999999999875 344443 444444 799999999999653100 000000000000
Q ss_pred ------HHHHHHHHH-Hc------------CCcEEEEecccCCCCHHHHHHHHHHHHcCCCCcccccCCCCCccc
Q 029177 141 ------TAQGEELKK-LI------------GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIF 196 (197)
Q Consensus 141 ------~~~~~~~~~-~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~ 196 (197)
.....+|+. .+ ..+.++++||..|+|+-+++.+|++.....-..+-...-.-.|.+
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTV 704 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTV 704 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEE
Confidence 001112221 11 134577899999999999999999877655444444444444433
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.1e-11 Score=94.31 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=99.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCC-----------CCC-CCceeeeeeE---------------EEE-----EC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFP-----------TDY-VPTVFDNFSA---------------NVV-----VD 51 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~-----------~~~-~~~~~~~~~~---------------~~~-----~~ 51 (197)
....+|++.+|+..-||||||-||+.+.-. .+. ..+....... ++. +.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 446799999999999999999999864210 000 0111111110 111 11
Q ss_pred CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhc
Q 029177 52 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLI 131 (197)
Q Consensus 52 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 131 (197)
-....|-+-|||||+.|......-.+.||++|+++|+...-.-..-++.++..+- .-..+++..||+||.+-.+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~-- 157 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEE-- 157 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHH--
Confidence 1224677999999999998888888899999999998543322222222322222 23468889999999874430
Q ss_pred CCCCCCCccHHHHHHHHHHcCC--cEEEEecccCCCCHH
Q 029177 132 NHPGATPITTAQGEELKKLIGA--AVYIECSSKTQQNVK 168 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 168 (197)
.-.-...+...|+.+++. ..++++||..|+|+-
T Consensus 158 ----~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 ----VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ----HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 001233566778888864 358899999999864
No 295
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.9e-12 Score=97.42 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=80.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhc--CCCCC-------------CCCCc------eeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS--NTFPT-------------DYVPT------VFDNFSANVVVDGSTVNLGLWDTAGQE 66 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~--~~~~~-------------~~~~~------~~~~~~~~~~~~~~~~~~~~~D~~g~~ 66 (197)
=..+||-+|.+|||||...|+- +.... ...+. ..+..+..+.++...+.+.+.|||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3578999999999999998762 22211 00011 112223334455556888899999999
Q ss_pred CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
+|+..+-.-+.-+|.+++|+|+...-.-... +++..++- .++|++-++||.|....
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDREGR 148 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeeccccccC
Confidence 9998877778889999999998876544443 44455444 38999999999997643
No 296
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.36 E-value=1.3e-11 Score=95.46 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=65.6
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP 134 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 134 (197)
+.+.|.||+|...-... ....+|.++++.+....+.+... + ..+. ...-++|+||+|+......
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k---~gi~----E~aDIiVVNKaDl~~~~~a----- 212 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-K---KGIM----ELADLIVINKADGDNKTAA----- 212 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-H---hhhh----hhhheEEeehhcccchhHH-----
Confidence 67889999997632221 46679999999775544444443 1 1111 1234899999998753210
Q ss_pred CCCCccHHHHHHHHHH------cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 135 GATPITTAQGEELKKL------IGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.....+....... ...+|++.+||++++|++++++.+.+...
T Consensus 213 ---~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 213 ---RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ---HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0011112222211 12258999999999999999999998764
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.35 E-value=3e-11 Score=94.47 Aligned_cols=157 Identities=14% Similarity=0.187 Sum_probs=99.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC----C-------------CCCCCCC---ceeeeee---EEEEE---CCeEEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN----T-------------FPTDYVP---TVFDNFS---ANVVV---DGSTVNLG 58 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~----~-------------~~~~~~~---~~~~~~~---~~~~~---~~~~~~~~ 58 (197)
...+-|.++|+.++|||||+++|.+. . ++.+..+ +++++.. ..+.+ ++....++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34688999999999999999999976 2 2223333 3322222 22222 45557889
Q ss_pred EEecCCCcCcccc-----------------------------cccCcC-CCcEEEEEE-ECC----ChhhHHHHHHHHHH
Q 029177 59 LWDTAGQEDYNRL-----------------------------RPLSYR-GADVFLLAF-SLI----SKASYENISKKWIP 103 (197)
Q Consensus 59 ~~D~~g~~~~~~~-----------------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~ 103 (197)
++||+|-..-..+ ....+. .+++.++|. |.+ .++.+.....+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999994321100 111233 678888887 664 23445555578888
Q ss_pred HHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC--CCCHHHHHHHHHH
Q 029177 104 ELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT--QQNVKTVFDAAIK 176 (197)
Q Consensus 104 ~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~ 176 (197)
.++.. ++|++++.|+.|-... ...+...++...++. |++.+|+.+ .+.+..++..+.-
T Consensus 175 eLk~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 175 ELKEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHHhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHh
Confidence 88877 8999999999994321 233444567777885 777777664 4566666655544
No 298
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.34 E-value=3.2e-11 Score=94.77 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=110.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhc--CCCCCCCC-------------CceeeeeeEEEEECCeEEEEEEEecCCCcCccccc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV-------------PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 72 (197)
=+|++|-+..-|||||+..|+. +.|..... ....+...+...++...+.+.+.|||||-+|--..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 3799999999999999999986 33322110 11122333333344444788899999999999999
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG 152 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
...++-.|++++++|+.+..-... ...+...-. .+.+-|+|.||+|....+.. .-.+++.++...++
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp~---------~Vvd~vfDLf~~L~ 152 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARPD---------EVVDEVFDLFVELG 152 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCHH---------HHHHHHHHHHHHhC
Confidence 999999999999999988644333 222222222 26777888899999875431 22244445544443
Q ss_pred C------cEEEEecccCC----------CCHHHHHHHHHHHHcCCCC
Q 029177 153 A------AVYIECSSKTQ----------QNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 153 ~------~~~~~~Sa~~~----------~~i~~~~~~i~~~~~~~~~ 183 (197)
+ +|++..|+..| +++..+|+.|++.+..+.-
T Consensus 153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 1 47888888764 4688999999999876653
No 299
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.31 E-value=5.3e-11 Score=86.95 Aligned_cols=151 Identities=14% Similarity=0.078 Sum_probs=84.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC------------CCCCCceeeee-eEEEEE-CCe------------------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP------------TDYVPTVFDNF-SANVVV-DGS------------------ 53 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~------------~~~~~~~~~~~-~~~~~~-~~~------------------ 53 (197)
....|+++|..|+|||||++++...... ........... ...+.+ +++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4678999999999999999998753110 00000000000 001111 111
Q ss_pred -EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC
Q 029177 54 -TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN 132 (197)
Q Consensus 54 -~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 132 (197)
...+.+.|+.|.-.... .+....+..+.++|+.+.+..... .... ...|.++++||+|+.+...
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~-----~~~a~iiv~NK~Dl~~~~~---- 165 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK---YPGM-----FKEADLIVINKADLAEAVG---- 165 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh---hHhH-----HhhCCEEEEEHHHccccch----
Confidence 23556777877211111 111234555678888765432111 1111 1457899999999965321
Q ss_pred CCCCCCccHHHHHHHHHH-cCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 133 HPGATPITTAQGEELKKL-IGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
.......+..++ .+..+++++||++++|++++++++.+.
T Consensus 166 ------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 ------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred ------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 112233333333 334589999999999999999999874
No 300
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.2e-11 Score=95.74 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=96.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--------------------CCCCCCCC----------ceeeeeeEEEEECCeEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN--------------------TFPTDYVP----------TVFDNFSANVVVDGSTV 55 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~--------------------~~~~~~~~----------~~~~~~~~~~~~~~~~~ 55 (197)
..+.++++|+..+|||||+.+++.. +..-.|.. ...+-......++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 3689999999999999999887642 11111111 11112223334555667
Q ss_pred EEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---HH------HHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 56 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YE------NISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 56 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~------~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
.+++.|+|||.+|-...-.-...||++++|+|++..+- |+ +. ..++..+. -.-++|++||+|+.+=
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg----i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG----ISQLIVAINKMDLVSW 330 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC----cceEEEEeecccccCc
Confidence 89999999999998887778889999999999876431 11 11 22233332 3468899999999862
Q ss_pred hhhhcCCCCCCCccHHHHHHHH-HHcC----CcEEEEecccCCCCHHHH
Q 029177 127 KQYLINHPGATPITTAQGEELK-KLIG----AAVYIECSSKTQQNVKTV 170 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~Sa~~~~~i~~~ 170 (197)
.+ ..-.........|. +..| .+.|+++|+..|+|+-..
T Consensus 331 sq------~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQ------DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cH------HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 11 00001112223333 3333 246999999999997644
No 301
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.30 E-value=1.4e-10 Score=85.08 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=93.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCC---CceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----------cc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 73 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 73 (197)
++|+|+|.+|+||||++|.+++........ +.+..........++ ..+.++||||-.+.... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999865433321 222222233346677 56779999995332111 01
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccchhhhcCCCCCCCcc---HHHHHHH
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP---TVPIVLVGTKQDLREDKQYLINHPGATPIT---TAQGEEL 147 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~ 147 (197)
....+.|++++|+..+ +-+-.+ ...+..+...+. -..++||.|..|....... ...+. ....+++
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~------~~~l~~~~~~~l~~l 149 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDSL------EDYLKKESNEALQEL 149 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTH------HHHHHHHHHHHHHHH
T ss_pred hccCCCeEEEEEEecC-cchHHH--HHHHHHHHHHccHHHHhHhhHHhhhccccccccH------HHHHhccCchhHhHH
Confidence 1245789999999988 333222 233333333331 1358888898886654210 00011 1335667
Q ss_pred HHHcCCcEEEEeccc------CCCCHHHHHHHHHHHHcCC
Q 029177 148 KKLIGAAVYIECSSK------TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 148 ~~~~~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~ 181 (197)
.+..+. .++.++.+ ....+.+++..|-+.+...
T Consensus 150 i~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 150 IEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp HHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 777887 67777666 3456888888887766544
No 302
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.28 E-value=2.2e-10 Score=89.35 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=56.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeE---------------EEEEEEecCCCcCcccc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYNRL 71 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~~ 71 (197)
++|++||.||||||||+|++++... ..++..++.+.....+.+.+.. ..+++.|+||...-.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998653 2344555544444444444321 25889999996532111
Q ss_pred -------cccCcCCCcEEEEEEECC
Q 029177 72 -------RPLSYRGADVFLLAFSLI 89 (197)
Q Consensus 72 -------~~~~~~~~~~~i~v~d~~ 89 (197)
....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112367899999999984
No 303
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.27 E-value=2.7e-10 Score=86.59 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=67.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccc----
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---- 71 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---- 71 (197)
.|+|+|+|.+|+|||||+|.|++....... ..+. .......+.-++..+.++++||||--+....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999986443221 0111 1222233444677889999999993321100
Q ss_pred ----------------------c-ccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 72 ----------------------R-PLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 72 ----------------------~-~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
. ...=...|+++++++++... +-.++ .++..+.. .+++|-|..|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls~---~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLSK---RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHTT---TSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhcc---cccEEeEEecccccCH
Confidence 0 00013578999999987532 22232 34455554 5788989999998543
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.27 E-value=3e-11 Score=94.24 Aligned_cols=168 Identities=13% Similarity=0.126 Sum_probs=79.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCce--eeeeeEEEEECCeEEEEEEEecCCCcC--ccc---ccccCcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV--FDNFSANVVVDGSTVNLGLWDTAGQED--YNR---LRPLSYR 77 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~---~~~~~~~ 77 (197)
.+++|+|+|.+|+|||||||.|.+-.-.+. ..++. .+......-.....-.+.+||.||... +.. ....-+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 468999999999999999999986322211 12221 111111111111112477999999532 211 1122356
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH----HHHH---
Q 029177 78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE----LKKL--- 150 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--- 150 (197)
..|.+|++.+ .+-+..+ ..+...+... +.|+.+|-||+|..-.... ....+....++..+ -+.+
T Consensus 114 ~yD~fiii~s--~rf~~nd--v~La~~i~~~--gK~fyfVRTKvD~Dl~~~~---~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 114 RYDFFIIISS--ERFTEND--VQLAKEIQRM--GKKFYFVRTKVDSDLYNER---RRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp G-SEEEEEES--SS--HHH--HHHHHHHHHT--T-EEEEEE--HHHHHHHHH---CC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccCEEEEEeC--CCCchhh--HHHHHHHHHc--CCcEEEEEecccccHhhhh---ccCCcccCHHHHHHHHHHHHHHHHH
Confidence 7788777665 3323333 2444555555 7899999999996311110 01111233333222 2222
Q ss_pred ---cCCcEEEEecccCC--CCHHHHHHHHHHHHcCCC
Q 029177 151 ---IGAAVYIECSSKTQ--QNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 151 ---~~~~~~~~~Sa~~~--~~i~~~~~~i~~~~~~~~ 182 (197)
...+++|-+|+.+- .+...+.+.+.+.+...+
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 13467889999874 456677777777665443
No 305
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=6.2e-11 Score=99.43 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=85.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCC------CceeeeeeEEEEECCeEEEEEEEecCC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DYV------PTVFDNFSANVVVDGSTVNLGLWDTAG 64 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g 64 (197)
.++.-+|.++|+-.+|||||..+++. +.... ++. ..+...-..++.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 44667899999999999999999875 21111 000 001111112233343 47888999999
Q ss_pred CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
|-+|.......++-+|++++|+|+...-....- ..|.+..+. ++|.+++.||+|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~---~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY---GVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc---CCCeEEEEECcccccc
Confidence 999999999999999999999999987666554 566655554 6999999999997654
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.20 E-value=7.6e-11 Score=83.19 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=43.8
Q ss_pred EEEEecCCCcCc----ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 029177 57 LGLWDTAGQEDY----NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121 (197)
Q Consensus 57 ~~~~D~~g~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 121 (197)
+.|+|+||-... ...+..++..+|++++|.++++..+-... ..+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 679999996432 24456667999999999999997665554 5565565554 33488888984
No 307
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=5.4e-11 Score=96.94 Aligned_cols=118 Identities=24% Similarity=0.274 Sum_probs=85.3
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc---------ee----eeee---E--EEE---ECCeEEEEEEEe
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT---------VF----DNFS---A--NVV---VDGSTVNLGLWD 61 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~---------~~----~~~~---~--~~~---~~~~~~~~~~~D 61 (197)
++....++.++|+-+.|||+|+..|.....++-+..+ .. ...+ . ++. .+++.+.+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 5567788999999999999999998875443221111 10 0000 0 111 256778999999
Q ss_pred cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
||||-+|.+.....++.+|++++++|+.+.-.+..- +.+...-. .+.|+++|+||.|..
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHh--ccCcEEEEEehhHHH
Confidence 999999999999999999999999999988776663 33222222 379999999999954
No 308
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.19 E-value=6e-11 Score=94.78 Aligned_cols=161 Identities=25% Similarity=0.418 Sum_probs=124.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
..+|+.|||..++|||+|+.+++.+.|..+..+. ...+...+..++....+.+.|.+|... ..+..+.|++|||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCc-CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 3589999999999999999999999997765554 556677778888888999999988543 3456778999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|.+.+..+++.+ ..+...+..+. ..+|+++++++.-..... .+.+...++.+++..+..-.+|++.+.+
T Consensus 103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty 173 (749)
T KOG0705|consen 103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY 173 (749)
T ss_pred EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence 999999999998 44444444333 578999999886654432 2335666677776666544799999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029177 164 QQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~ 181 (197)
|.++...|..+...+...
T Consensus 174 Glnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999877655
No 309
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.19 E-value=6.5e-10 Score=85.76 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=82.6
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhH----------HHHHHHHHHHHhhhC-CCCCEEEEeeCCCc
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY----------ENISKKWIPELRHYA-PTVPIVLVGTKQDL 123 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~ 123 (197)
..+.++|++||..-+..|.+++.++++++||+++++.+.. .+....|-..+.... .+.++|++.||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 6788999999999999999999999999999999986532 111122222332222 68999999999998
Q ss_pred ccchhhh-----cCCCCCCCccHHHHHHHHH--------Hc-CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 124 REDKQYL-----INHPGATPITTAQGEELKK--------LI-GAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 124 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
.+..... ..+.....-..+++..+.+ .. ...-+..+.|.+-.+++.+|+.+.+.+...
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 8653210 1111111123334433322 22 122344578888899999999999877543
No 310
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.19 E-value=2.9e-09 Score=77.86 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=103.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-------cccCcCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRG 78 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~ 78 (197)
.-||+++|-|.||||||+..+....- ..+|..|+.+.....+.+++ ..+|+.|.||.-.-.+. .-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 46899999999999999999987533 34566677677777778888 57789999995432221 1223578
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhC----CC-------------------------------------------
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYA----PT------------------------------------------- 111 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~------------------------------------------- 111 (197)
||.+++|.|++..+.-..+..+-+..+.-.. |+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 9999999999987654433222222221111 11
Q ss_pred -------------------CCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHH
Q 029177 112 -------------------VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172 (197)
Q Consensus 112 -------------------~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 172 (197)
++.+-|.||+|. ++.+++..++++-+. +.+|+.-..|++.+++
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~lle 281 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLLE 281 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHHH
Confidence 144556666665 777888888876554 5567778889999999
Q ss_pred HHHHHH
Q 029177 173 AAIKVV 178 (197)
Q Consensus 173 ~i~~~~ 178 (197)
.+-..+
T Consensus 282 ~iWe~l 287 (364)
T KOG1486|consen 282 RIWEEL 287 (364)
T ss_pred HHHHHh
Confidence 888765
No 311
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.7e-09 Score=81.69 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=56.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECC----------------eEEEEEEEecCCCcCc--
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG----------------STVNLGLWDTAGQEDY-- 68 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~g~~~~-- 68 (197)
+++.+||.||||||||.|.++...- ..+|+.+|.+.-...+.+.+ ....++|+|++|.-.-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 6899999999999999999998654 25666665443333332211 1356889999985432
Q ss_pred --cccccc---CcCCCcEEEEEEECCC
Q 029177 69 --NRLRPL---SYRGADVFLLAFSLIS 90 (197)
Q Consensus 69 --~~~~~~---~~~~~~~~i~v~d~~~ 90 (197)
.-+-.. -++.+|+++.|+|+..
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 222223 3678999999999874
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.13 E-value=1.1e-09 Score=84.30 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=62.6
Q ss_pred EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177 54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH 133 (197)
Q Consensus 54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 133 (197)
.+.+.|.||+|..... ......+|.++++.+.. +.+++ ..+...+ .+.|.++++||+|+.......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~--- 191 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGL----MEIADIYVVNKADGEGATNVT--- 191 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHH----hhhccEEEEEcccccchhHHH---
Confidence 3677899999854221 12456678888775433 33333 2222222 256889999999997542100
Q ss_pred CCCCCccHH---HHHHHHHH-cC-CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 134 PGATPITTA---QGEELKKL-IG-AAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 134 ~~~~~~~~~---~~~~~~~~-~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
..... ....+... .+ .++++.+||++++|++++++++....
T Consensus 192 ----~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 192 ----IARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred ----HHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00000 00111111 11 13689999999999999999998864
No 313
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=1.2e-10 Score=83.92 Aligned_cols=117 Identities=23% Similarity=0.353 Sum_probs=81.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc-----ccccccCcCCCc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRGAD 80 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~~~ 80 (197)
=||+++|.+|+|||++-.-++.+. +.....+.+.+....++.+-| ...+.+||++||+.+ +......+++.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 489999999999999987776432 222222222333333343333 267889999999843 346677889999
Q ss_pred EEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 81 VFLLAFSLISKASYENISKKW---IPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
+++++||++..+-..++ ..+ ++.+.++.|...+.+...|.|+...
T Consensus 84 vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 99999999998765555 333 4555666677778888999999753
No 314
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.1e-09 Score=82.53 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=106.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc---CCCCCC----------CCCce----eeee-----e--EEEEEC----CeEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS---NTFPTD----------YVPTV----FDNF-----S--ANVVVD----GSTVNL 57 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~---~~~~~~----------~~~~~----~~~~-----~--~~~~~~----~~~~~~ 57 (197)
-.++|.++|+..-|||||..+|++ .++.++ |..+. .+.+ . ...... .-...+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 368999999999999999999886 222111 11000 0000 0 000001 112457
Q ss_pred EEEecCCCcCcccccccCcCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177 58 GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH 133 (197)
Q Consensus 58 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 133 (197)
-|.|.|||+-.-+....-..-.|++++|+.++.+ ++-+.+. -++.+. -..++++-||.|+......
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~--AleIig----ik~iiIvQNKIDlV~~E~A---- 158 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM--ALEIIG----IKNIIIVQNKIDLVSRERA---- 158 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH--HHhhhc----cceEEEEecccceecHHHH----
Confidence 7999999987655544445567999999999875 3333331 122222 2468999999999764331
Q ss_pred CCCCCccHHHHHHHHHHcC--CcEEEEecccCCCCHHHHHHHHHHHHcCCCCcc
Q 029177 134 PGATPITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 185 (197)
.-.+++.++|.+..- ..|++.+||..+.|++-+++.|...+..+.+.-
T Consensus 159 ----lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 159 ----LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred ----HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 134455566655442 238999999999999999999999997776554
No 315
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=7.4e-10 Score=86.75 Aligned_cols=154 Identities=19% Similarity=0.123 Sum_probs=102.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF---PTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
-|+..|+---|||||+..+.+..- ++. ...++.+.-.......+ ..+.|+|.||++++-+..-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 467889999999999999988432 222 22233222222223333 478899999999987776667788999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 85 AFSLISK---ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 85 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
|++.++. .+.+.+ ..++.+.. ...++|+||+|..++... .... ++..+... +...++|.+|+
T Consensus 80 vV~~deGl~~qtgEhL--~iLdllgi----~~giivltk~D~~d~~r~-------e~~i-~~Il~~l~-l~~~~i~~~s~ 144 (447)
T COG3276 80 VVAADEGLMAQTGEHL--LILDLLGI----KNGIIVLTKADRVDEARI-------EQKI-KQILADLS-LANAKIFKTSA 144 (447)
T ss_pred EEeCccCcchhhHHHH--HHHHhcCC----CceEEEEeccccccHHHH-------HHHH-HHHHhhcc-ccccccccccc
Confidence 9999654 444444 22333332 346899999999864320 0011 11111111 44557899999
Q ss_pred cCCCCHHHHHHHHHHHHc
Q 029177 162 KTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~ 179 (197)
++|+|++++-+.|.+..-
T Consensus 145 ~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 145 KTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999999874
No 316
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.05 E-value=5.3e-09 Score=73.83 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=51.5
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhCCC--CCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-HHHHcCCcEE
Q 029177 80 DVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-LKKLIGAAVY 156 (197)
Q Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (197)
+.-++|+|++..+.... +-.|. ..=++|+||.|+...-. ...+...+ ..+-.+..|+
T Consensus 119 ~~~v~VidvteGe~~P~----------K~gP~i~~aDllVInK~DLa~~v~----------~dlevm~~da~~~np~~~i 178 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR----------KGGPGIFKADLLVINKTDLAPYVG----------ADLEVMARDAKEVNPEAPI 178 (202)
T ss_pred ceEEEEEECCCCCCCcc----------cCCCceeEeeEEEEehHHhHHHhC----------ccHHHHHHHHHHhCCCCCE
Confidence 37788888876543221 00010 02378899999987543 33343333 3444466689
Q ss_pred EEecccCCCCHHHHHHHHHHHH
Q 029177 157 IECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+++|+++|+|++++++++...+
T Consensus 179 i~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 179 IFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEeCCCCcCHHHHHHHHHhhc
Confidence 9999999999999999988654
No 317
>PRK00098 GTPase RsgA; Reviewed
Probab=99.02 E-value=2.4e-09 Score=82.41 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=65.5
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
.+.++|.+++|+|++++.+......+|+..+.. .++|+++|+||+|+.++.. ......+..+..+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~- 142 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY- 142 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-
Confidence 358999999999999887666555778776654 3799999999999963221 11223344455665
Q ss_pred EEEEecccCCCCHHHHHHHHH
Q 029177 155 VYIECSSKTQQNVKTVFDAAI 175 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~ 175 (197)
+++.+||++++|+++++..+.
T Consensus 143 ~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 143 DVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred eEEEEeCCCCccHHHHHhhcc
Confidence 899999999999999998774
No 318
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.01 E-value=1.2e-09 Score=78.82 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=65.4
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL 147 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
+...+..+++++|++++|+|++++..-.. ..+.....+.|+++|+||+|+.... ...+....+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccc------hhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence 46667778899999999999988652211 1122222468999999999996432 222333333
Q ss_pred H-----HHcC--CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 148 K-----KLIG--AAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 148 ~-----~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
. ...+ ..+++.+||++++|+++++..+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 2222 236899999999999999999998763
No 319
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.4e-09 Score=81.13 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=103.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC----------CCCC-CCCCce----eeeeeEEEEECCeEEEEEEEecCCCcCccc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN----------TFPT-DYVPTV----FDNFSANVVVDGSTVNLGLWDTAGQEDYNR 70 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~----------~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 70 (197)
..++|..+|+-.-|||||...+..- .|.. ...|.. .+.-..++.++-....+-..|+|||.+|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 4689999999999999999877641 1100 001111 122223333333334555899999999876
Q ss_pred ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177 71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDKQYLINHPGATPITTAQGEELKK 149 (197)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
..-.-.-++|+.|+|+.++|..-.....+.++ .+.. ++|. +++.||+|+.++.+. ...-..+++++..
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLl--arqv--Gvp~ivvflnK~Dmvdd~el-------lelVemEvreLLs 159 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHILL--ARQV--GVPYIVVFLNKVDMVDDEEL-------LELVEMEVRELLS 159 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhhhh--hhhc--CCcEEEEEEecccccCcHHH-------HHHHHHHHHHHHH
Confidence 65555667899999999998654433311111 1111 5655 577799999875531 1134467888888
Q ss_pred HcCC----cEEEEecccCC-C-------CHHHHHHHHHHHHcCCCCcc
Q 029177 150 LIGA----AVYIECSSKTQ-Q-------NVKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 150 ~~~~----~~~~~~Sa~~~-~-------~i~~~~~~i~~~~~~~~~~~ 185 (197)
.|+. .|++.-||..- + .|.++.+++-.++..+.+..
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~ 207 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDI 207 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcc
Confidence 8875 36777777642 2 25666666666666555543
No 320
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.01 E-value=6.3e-10 Score=82.31 Aligned_cols=165 Identities=16% Similarity=0.046 Sum_probs=95.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ce-eeeeeEEEEECCeEEEEEEEecCCC----------cCccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TV-FDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLR 72 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 72 (197)
.+...++++|.+|+|||+|++.++.......... .. .+..-..+.+.. .+.+.|.||- .++....
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence 4568999999999999999999987543222111 22 222222333333 5668999991 1222333
Q ss_pred ccCcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCC-ccHHHHHHHH
Q 029177 73 PLSYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATP-ITTAQGEELK 148 (197)
Q Consensus 73 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~ 148 (197)
..++. +.--+++++|++-+-.-.+. ..++.+.++ ++|+.+|.||||.........+.++... +.....-+.+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 33332 22345567777665433332 233444444 8999999999998765443322222211 1111111122
Q ss_pred HHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 149 KLIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 149 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
.... +|++.+|+.++.|+++++..+.+.
T Consensus 287 f~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 287 FLVD-LPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eecc-CCceeeecccccCceeeeeehhhh
Confidence 2222 367789999999999999888774
No 321
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.98 E-value=3.9e-09 Score=78.28 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=42.3
Q ss_pred EEEEEEecCCCcCc-------------ccccccCcC-CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 029177 55 VNLGLWDTAGQEDY-------------NRLRPLSYR-GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 120 (197)
Q Consensus 55 ~~~~~~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 120 (197)
..|.++|+||-... ..+...+++ ..+++++|+|+...-.-... ..+...+... +.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence 46789999997422 112333455 45688899987653222221 2333334333 7899999999
Q ss_pred CCcccc
Q 029177 121 QDLRED 126 (197)
Q Consensus 121 ~D~~~~ 126 (197)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 999763
No 322
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.98 E-value=1.3e-09 Score=76.02 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=63.2
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK 149 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.+..+.++++|++++|+|++++...... .+...+.. .+.|+++|+||+|+..... . .....+..
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~----------~--~~~~~~~~ 67 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV----------L--EKWKSIKE 67 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH----------H--HHHHHHHH
Confidence 3455667789999999999886543321 22222322 2689999999999854211 1 11112333
Q ss_pred HcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 150 LIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 150 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
..+. +++.+||++++|++++++.+.+.+.
T Consensus 68 ~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 68 SEGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred hCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 3444 7899999999999999999998764
No 323
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.97 E-value=1.5e-09 Score=82.04 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=54.0
Q ss_pred EEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeE---------------EEEEEEecCCCcCcccc--
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYNRL-- 71 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~~-- 71 (197)
|+++|.||||||||+|++++... ...+..++.+.....+.+.+.. ..++++|+||...-.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998654 3345555544444444454421 25889999996532211
Q ss_pred -----cccCcCCCcEEEEEEECC
Q 029177 72 -----RPLSYRGADVFLLAFSLI 89 (197)
Q Consensus 72 -----~~~~~~~~~~~i~v~d~~ 89 (197)
.-..++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 111257899999999874
No 324
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.97 E-value=2.1e-08 Score=82.98 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=71.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc----------ccc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNT-FPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----------RPL 74 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~ 74 (197)
.++|+++|.+|+||||++|.+++.. +.... .+.+..........++ ..+.++||||..+.... ...
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4789999999999999999999864 33221 2222222222233455 56789999997653210 111
Q ss_pred Cc--CCCcEEEEEEECCChhhH-HHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccc
Q 029177 75 SY--RGADVFLLAFSLISKASY-ENISKKWIPELRHYAP---TVPIVLVGTKQDLRED 126 (197)
Q Consensus 75 ~~--~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~ 126 (197)
++ ..+|++++|..++..... ++ ..++..+...+. -.-+|||.|..|...+
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD--~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSND--LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHH--HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 22 257999999887643332 22 234455544441 2357899999998763
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.97 E-value=4.6e-09 Score=79.54 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=39.7
Q ss_pred CCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-HHHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 112 VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-LKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 112 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
.+-++|.||+|+..... ...+...+ +....+..+++.+||++|+|++++++||...
T Consensus 231 ~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999965211 12223333 3344455689999999999999999999874
No 326
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.1e-09 Score=77.27 Aligned_cols=167 Identities=14% Similarity=0.195 Sum_probs=93.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---ccccCcCCCcEEEEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVFLLA 85 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~i~v 85 (197)
+|++.|...+||||+..-.+....+.+..--..+..-..-.+.+..+.+++||.|||-.+-. .....++++.++++|
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv 108 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV 108 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence 59999999999999987666554322211000000000112334568899999999976532 234567899999999
Q ss_pred EECCChhhHHHHHHHHHHHHhh---hCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc--C-CcEEEEe
Q 029177 86 FSLISKASYENISKKWIPELRH---YAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI--G-AAVYIEC 159 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ 159 (197)
+|+.+. -.+.+ ..+...+.+ ..+++-+-+...|.|...+.... +.++-+-.....+++..- + -+.++ .
T Consensus 109 IDaQdd-y~eal-a~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ki---etqrdI~qr~~d~l~d~gle~v~vsf~-L 182 (347)
T KOG3887|consen 109 IDAQDD-YMEAL-ARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKI---ETQRDIHQRTNDELADAGLEKVQVSFY-L 182 (347)
T ss_pred EechHH-HHHHH-HHHHHHhhheeecCCCceEEEEEEeccCCchhhhh---hhHHHHHHHhhHHHHhhhhccceEEEE-E
Confidence 996543 22222 333333333 33788888999999976433100 000111111111122111 1 12344 4
Q ss_pred cccCCCCHHHHHHHHHHHHcCC
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
.+.-..++-|.|..+++.+..+
T Consensus 183 TSIyDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 183 TSIYDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred eeecchHHHHHHHHHHHHHhhh
Confidence 4445688999999999877654
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.93 E-value=5.3e-09 Score=78.45 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP 134 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 134 (197)
+.+.+++|.|--+-. .....-+|.++++.-..-.+.++.+..-++ .+.=++|.||.|..+...-
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim--------EiaDi~vINKaD~~~A~~a----- 207 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIM--------EIADIIVINKADRKGAEKA----- 207 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhh--------hhhheeeEeccChhhHHHH-----
Confidence 556678887632211 113345788888877666655555422221 2345788999996554210
Q ss_pred CCCCccHHHHHHHH-----HHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 135 GATPITTAQGEELK-----KLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 135 ~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.-....+..+. .....+|.+.+||.+|+|++++++.+.+...
T Consensus 208 ---~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 208 ---ARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ---HHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 00001111111 2223568999999999999999999998664
No 328
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=9.4e-09 Score=79.20 Aligned_cols=161 Identities=15% Similarity=0.186 Sum_probs=97.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCceeeeee----------EEEEE----------CC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------------YVPTVFDNFS----------ANVVV----------DG 52 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~--------------~~~~~~~~~~----------~~~~~----------~~ 52 (197)
.+|++++|.-.+|||||+--|..+.+... ..+......+ ..+.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 57999999999999999977766543211 1100000000 00111 11
Q ss_pred eEEEEEEEecCCCcCcccccccCcC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYR--GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL 130 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 130 (197)
..-.++|+|.+|+.+|....-+.+. ..|.+++++++...-.... ..-+..+... ++|+.++.+|+|+.......
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 1235779999999999877655554 3688888888766533222 2223344433 89999999999998763211
Q ss_pred ---------cCCCC-----CCCccHHHHHHHHHHc---CCcEEEEecccCCCCHHHHH
Q 029177 131 ---------INHPG-----ATPITTAQGEELKKLI---GAAVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 131 ---------~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~ 171 (197)
....+ ++.-+.+++...+++. +..|+|.+|+..|+|++-+-
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 11111 1222344544444443 56789999999999987543
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=98.92 E-value=1.1e-08 Score=80.09 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=65.0
Q ss_pred cccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177 70 RLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK 148 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
.+....+.++|.+++|+|+.++. +...+ .+|+..... .++|+++|+||+|+..... . ....+..
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~----------~--~~~~~~~ 145 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE----------Q--QQWQDRL 145 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH----------H--HHHHHHH
Confidence 33444578999999999999876 33344 667665543 4799999999999964321 1 1112223
Q ss_pred HHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177 149 KLIGAAVYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 149 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
...+. +++.+||++++|++++++.+..
T Consensus 146 ~~~g~-~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 146 QQWGY-QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred HhcCC-eEEEEEcCCCCCHHHHhhhhcc
Confidence 45565 7899999999999999988865
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.91 E-value=8.2e-09 Score=79.03 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=66.1
Q ss_pred ccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 73 PLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
...+.++|.+++|+|+.++. ++..+ .+|+..+... ++|+++|+||+|+..... ......+....
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~~------------~~~~~~~~~~~ 137 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDEE------------EELELVEALAL 137 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChHH------------HHHHHHHHHhC
Confidence 34578999999999999998 77777 6787766654 799999999999965311 11122333445
Q ss_pred CCcEEEEecccCCCCHHHHHHHHHH
Q 029177 152 GAAVYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 152 ~~~~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
+. +++.+||+++.|+++++..+..
T Consensus 138 g~-~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 138 GY-PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CC-eEEEEECCCCccHHHHHhhhcc
Confidence 64 8999999999999999887764
No 331
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.90 E-value=4.5e-09 Score=72.11 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
+++++|.+|+|||||+|++.+............+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876532111111222233344444 4679999995
No 332
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.90 E-value=4.9e-09 Score=77.49 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=59.0
Q ss_pred EEEEEEecCC--CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC
Q 029177 55 VNLGLWDTAG--QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN 132 (197)
Q Consensus 55 ~~~~~~D~~g--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 132 (197)
+.+.+++|.| |.+. ....-+|.+++|....-.+..+.+..-.++ ++=++|.||.|......
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~---- 184 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADR---- 184 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHH----
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHH----
Confidence 5566788876 3332 123558999999988776655544221211 24578889999765432
Q ss_pred CCCCCCccHHHHHHHHHHc------CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 133 HPGATPITTAQGEELKKLI------GAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
...+........ ..+|++.+||.+++|++++++.|.+..
T Consensus 185 -------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 185 -------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 122222222211 236899999999999999999998744
No 333
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=6.4e-08 Score=74.97 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=70.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC--------CCCceeeeeeEEEEE--CCeEEEEEEEecCCCcCcc-------
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYN------- 69 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~------- 69 (197)
.|.++++|++|.|||||+|.|+...+..+ ....+...-...+.+ +|..+.+++.||||--+.-
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 58999999999999999999988644332 111111111222223 5667889999999943321
Q ss_pred ------------------cccccCcC--CCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 70 ------------------RLRPLSYR--GADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 70 ------------------~~~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
...+..+. ..|++++.+..+... ..-+ -.++..+.. .+.+|-|.-|+|.....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D--i~~Mk~l~~---~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD--IEFMKKLSK---KVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh--HHHHHHHhc---cccccceeeccccCCHH
Confidence 11111222 678999999877652 2222 234455554 45566666799986543
No 334
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.88 E-value=3.5e-08 Score=75.98 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=70.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc---
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR--- 70 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--- 70 (197)
...+.|+++|++|.|||||+|.|++.....+. .++. ...+...+.=++..+.++++||||--++-.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 34799999999999999999999986432221 1222 122222333356778899999999433211
Q ss_pred ccc-----------cC------------c--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 71 LRP-----------LS------------Y--RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 71 ~~~-----------~~------------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
.|. .+ + ...|++++.+.++... +..+.-..+..+... +=+|=|+.|+|..-
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~~---vNlIPVI~KaD~lT 176 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSKR---VNLIPVIAKADTLT 176 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhcc---cCeeeeeeccccCC
Confidence 110 01 1 2478999999876542 222212444555554 44555557999865
Q ss_pred ch
Q 029177 126 DK 127 (197)
Q Consensus 126 ~~ 127 (197)
..
T Consensus 177 ~~ 178 (373)
T COG5019 177 DD 178 (373)
T ss_pred HH
Confidence 43
No 335
>PRK12288 GTPase RsgA; Reviewed
Probab=98.83 E-value=3.8e-08 Score=77.06 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=65.7
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..++|.+++|++.+...++..+ .+|+..... .++|.++|+||+|+..... ...........+..+. +
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence 4579999999999888888888 788766553 3789999999999965321 0011222233345565 8
Q ss_pred EEEecccCCCCHHHHHHHHHHH
Q 029177 156 YIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
++.+||++++|+++++..+...
T Consensus 185 v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 185 VLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred EEEEeCCCCcCHHHHHHHHhhC
Confidence 9999999999999999998753
No 336
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.81 E-value=1.2e-08 Score=80.58 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=68.6
Q ss_pred CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH
Q 029177 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.++|..+...+.+.++++++|+|+.+... .|...+.+...+.|+++|+||+|+.... ...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence 34677777778889999999999977542 2333333333468999999999996532 233333
Q ss_pred H----HHHHHcCCc--EEEEecccCCCCHHHHHHHHHHH
Q 029177 145 E----ELKKLIGAA--VYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 145 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
. ++++..+.. .++.+||++++|++++++.+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 3 345556642 48899999999999999999764
No 337
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.81 E-value=6.4e-09 Score=78.65 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=91.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcC---------cccccccCcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSYRG 78 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 78 (197)
-|.++|-.|+|||||+++|......+.. ...+.+.........+. -.+.+.||-|.-. |++.. .-...
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL-eeVae 257 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL-EEVAE 257 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH-HHHhh
Confidence 5899999999999999999975543332 22333333333333332 3456889998422 11111 12357
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCC----EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYA-PTVP----IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 153 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+|.++.|.|+++|+--... ...+..++..- ++.| ++=|-||.|...... . ...++
T Consensus 258 adlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e-------~E~n~- 317 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------E-------EEKNL- 317 (410)
T ss_pred cceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------c-------cccCC-
Confidence 8999999999999754444 44445555442 2333 345667777754321 1 11122
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
-+.+||++|+|++++.+++-......
T Consensus 318 --~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 318 --DVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred --ccccccccCccHHHHHHHHHHHhhhh
Confidence 46789999999999999887766433
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.77 E-value=2.5e-08 Score=70.57 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=35.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-CCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAG 64 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g 64 (197)
.++++++|.||+|||||+|++.+... .... .+++.. ...+..+. .++++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcC
Confidence 47999999999999999999998543 2222 222221 22223332 467999999
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=5e-08 Score=68.13 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=59.0
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
.+..+|++++|+|++++..-.. ..+...+.....+.|+++|+||+|+..... . ......+...+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~----------~-~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV----------T-ARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH----------H-HHHHHHHhcCCcE-
Confidence 4678999999999998743222 233444443334689999999999954321 1 1112222222222
Q ss_pred EEEEecccCCCCHHHHHHHHHHHH
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
..+.+||+++.|++++.+.+.+..
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHH
Confidence 357799999999999999998754
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=3.2e-08 Score=69.12 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=34.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 64 (197)
+.++|+++|.||||||||+|++.+.... ....+++.. ...+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999885431 222222221 11222222 256999999
No 341
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.75 E-value=2.5e-08 Score=77.16 Aligned_cols=171 Identities=17% Similarity=0.167 Sum_probs=98.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eeeeeE---------EEEE------------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDNFSA---------NVVV------------ 50 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~--------------~~~~~~---------~~~~------------ 50 (197)
..+.+.+.|+-+.|||||+-.|..++..+..-.+. ....+. .+..
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 46789999999999999998887765533211110 000000 0111
Q ss_pred -CCeEEEEEEEecCCCcCccccc--ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 51 -DGSTVNLGLWDTAGQEDYNRLR--PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 51 -~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
....-.+.|.|+.||+.|.... ..+=+..|..++++-+++.-+.-.- .-+...... .+|++++.||+|+..+.
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk--EHLgi~~a~--~lPviVvvTK~D~~~dd 271 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK--EHLGIALAM--ELPVIVVVTKIDMVPDD 271 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh--Hhhhhhhhh--cCCEEEEEEecccCcHH
Confidence 0112346699999999875432 2334678999999999887654442 222222222 78999999999998764
Q ss_pred hhh---------cCCCCCCC--c-cHHH----HHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 128 QYL---------INHPGATP--I-TTAQ----GEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 128 ~~~---------~~~~~~~~--~-~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
... +.-...-+ + .... +.......+..|+|.+|+.+|+|++-+.+ +...+...
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp~r 340 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCCcc
Confidence 321 00000000 0 0011 11222233467999999999999875444 44444333
No 342
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.5e-08 Score=75.42 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=79.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCce--eeeeeEEEEEC------Ce----------------------------
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVVD------GS---------------------------- 53 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~------~~---------------------------- 53 (197)
|+++|.-..|||||++-|+...++....+.. .+.+...+.-+ |.
T Consensus 61 ill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csq 140 (532)
T KOG1954|consen 61 ILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQ 140 (532)
T ss_pred EEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhc
Confidence 8899999999999999999988865433222 22222222111 11
Q ss_pred -----EEEEEEEecCCCc-----------CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 029177 54 -----TVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLV 117 (197)
Q Consensus 54 -----~~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv 117 (197)
.-.+.++||||.- +|.....++...+|.++++||+...+--++. ...+..++.+. --+-||
T Consensus 141 mp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~E--dkiRVV 217 (532)
T KOG1954|consen 141 LPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGHE--DKIRVV 217 (532)
T ss_pred CChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCCc--ceeEEE
Confidence 1236689999932 2344566677899999999999887766666 66777777764 345566
Q ss_pred eeCCCcccchh
Q 029177 118 GTKQDLREDKQ 128 (197)
Q Consensus 118 ~nK~D~~~~~~ 128 (197)
.||.|..+..+
T Consensus 218 LNKADqVdtqq 228 (532)
T KOG1954|consen 218 LNKADQVDTQQ 228 (532)
T ss_pred eccccccCHHH
Confidence 79999977543
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=4.4e-08 Score=69.41 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=37.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
..++++++|.+|+|||||+|++.+..+.. ...+.+ +.....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~-T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGV-TKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCE-EeeeEEEEec---CCEEEEECCCC
Confidence 35799999999999999999999876522 111111 1222223333 34679999994
No 344
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.67 E-value=8.5e-08 Score=73.12 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=37.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-T-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
..++++++|.||||||||+|+|.+.... . ....++. ....+.+.. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCc
Confidence 4589999999999999999999976432 1 2222221 122333433 4579999997
No 345
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.64 E-value=3e-07 Score=64.09 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=54.6
Q ss_pred cEEEEEEECCChhhHHHHHHHHH-HHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177 80 DVFLLAFSLISKASYENISKKWI-PELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE 158 (197)
Q Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
|++++|+|+.++.+.... .+. ..+.. .+.|+++|+||+|+..... + ......+....+ .+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~----------~-~~~~~~~~~~~~-~~ii~ 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV----------L-RKWLAYLRHSYP-TIPFK 64 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH----------H-HHHHHHHHhhCC-ceEEE
Confidence 689999999988665442 222 22222 3789999999999954221 1 011112322233 46889
Q ss_pred ecccCCCCHHHHHHHHHHHH
Q 029177 159 CSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+||+++.|++++.+.+.+..
T Consensus 65 vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 65 ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EeccCCcChhhHHHHHHHHh
Confidence 99999999999999987653
No 346
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.63 E-value=1.5e-07 Score=72.12 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=37.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 66 (197)
..++++++|.||||||||+|+|.+... .....+.++ .....+..++ .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T-~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVT-KAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeE-EEEEEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998653 222222221 1122233333 46799999974
No 347
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=3.7e-07 Score=66.60 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=67.4
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCC--------CCCceeeee--eEEEEECCeEEEEEEEecCCCcCc---
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVPTVFDNF--SANVVVDGSTVNLGLWDTAGQEDY--- 68 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~--- 68 (197)
|..--.|+|+|||.+|.|||||+|.++......+ ..+.+.... ...+.-++-...++++||||--+.
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 3444579999999999999999999986332221 111112211 222233566688999999994322
Q ss_pred ccccc-----------------------cCc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 029177 69 NRLRP-----------------------LSY--RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDL 123 (197)
Q Consensus 69 ~~~~~-----------------------~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 123 (197)
...|. ..+ ...|.+++.+..+.. ++..+.-.+++.+.+. +-++-|+-|+|.
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v---vNvvPVIakaDt 196 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV---VNVVPVIAKADT 196 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh---heeeeeEeeccc
Confidence 11111 111 246788888877654 3333323444555544 234444568885
Q ss_pred c
Q 029177 124 R 124 (197)
Q Consensus 124 ~ 124 (197)
.
T Consensus 197 l 197 (336)
T KOG1547|consen 197 L 197 (336)
T ss_pred c
Confidence 3
No 348
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=1.7e-07 Score=65.31 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=36.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEE-EECCeEEEEEEEecCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAG 64 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g 64 (197)
...+++++|.+|+|||||++++.+... ....++......... ..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997542 222223222222222 2222 578999999
No 349
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.60 E-value=2.3e-07 Score=72.72 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=57.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCe---------------EEEEEEEecCCCcCccc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR 70 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~ 70 (197)
+++.++|.|++|||||.+.+++... ...|..++.......+.+.+. ...+++.|+||...-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998654 234555544444444555442 13678999999654222
Q ss_pred -------ccccCcCCCcEEEEEEECC
Q 029177 71 -------LRPLSYRGADVFLLAFSLI 89 (197)
Q Consensus 71 -------~~~~~~~~~~~~i~v~d~~ 89 (197)
.....++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1222368899999999984
No 350
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.59 E-value=5.6e-06 Score=56.98 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=81.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecC-CCcCccc---------------
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA-GQEDYNR--------------- 70 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g~~~~~~--------------- 70 (197)
.+||.+-|+|||||||++.++.+.--... -...-.+...+.-+++..-|.+.|+. |...+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 58999999999999999988765321111 22344556666677777888888877 3221110
Q ss_pred ----------ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCc
Q 029177 71 ----------LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPI 139 (197)
Q Consensus 71 ----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 139 (197)
.....++.||++ ++|=--+-.+.. ..+...+.... .+.|++.+.-+.+...
T Consensus 83 v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks--~~f~~~ve~vl~~~kpliatlHrrsr~P-------------- 144 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVI--IIDEIGPMELKS--KKFREAVEEVLKSGKPLIATLHRRSRHP-------------- 144 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEE--EEecccchhhcc--HHHHHHHHHHhcCCCcEEEEEecccCCh--------------
Confidence 011123445644 445333333222 34555555444 4678777665554311
Q ss_pred cHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 140 TTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
..+-.+..+...+| .+.+|-+.+++.+...+
T Consensus 145 ----~v~~ik~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 145 ----LVQRIKKLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred ----HHHHhhhcCCEEEE----EccchhhHHHHHHHHHh
Confidence 12333444442333 66777778888888765
No 351
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.56 E-value=2.6e-07 Score=63.33 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=50.9
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
.+..+|++++|+|+.++.+... ..+...+....++.|+++|+||+|+..+.. .....+..+..+.
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~~------------~~~~~~~~~~~~~- 72 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEEQ------------RKAWAEYFKKEGI- 72 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHHH------------HHHHHHHHHhcCC-
Confidence 4678999999999998866443 123333332225789999999999954321 1233344445554
Q ss_pred EEEEecccCCCC
Q 029177 155 VYIECSSKTQQN 166 (197)
Q Consensus 155 ~~~~~Sa~~~~~ 166 (197)
+++.+||.++++
T Consensus 73 ~ii~iSa~~~~~ 84 (141)
T cd01857 73 VVVFFSALKENA 84 (141)
T ss_pred eEEEEEecCCCc
Confidence 789999998764
No 352
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.55 E-value=6.3e-08 Score=67.24 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=33.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------C-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPT------D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 69 (197)
.++++|++|||||||+|.|....-.. . ..+...+....-+.+++. -.++||||-..+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 58899999999999999999863211 1 111112233333444332 2489999976643
No 353
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.55 E-value=1.9e-07 Score=67.25 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=34.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC---------CCCCCC-ceeeeeeEEEEECCeEEEEEEEecCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF---------PTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAG 64 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g 64 (197)
.+++++|.+|+|||||+|.|..... ..+..+ ++.. ...+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence 5799999999999999999997432 112222 2222 22233332 467999999
No 354
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.5e-07 Score=76.58 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=78.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-CCCC-----CCCCceeee-----------eeEEEEECCeEEEEEEEecCCCcCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN-TFPT-----DYVPTVFDN-----------FSANVVVDGSTVNLGLWDTAGQEDY 68 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~-~~~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~~~~D~~g~~~~ 68 (197)
+.=+|.++-+-.+||||+-++.+.. .... ....++.+. -+.-.......+.+.++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3446888888999999999987752 1100 000111111 1111111223578889999999999
Q ss_pred ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
.-.....++-.|++++++|....-.-... .-|.+.- ++ ++|.+.+.||+|.-..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~-ry--~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMK-RY--NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHH-hc--CCCeEEEEehhhhcCC
Confidence 99999999999999999998876555554 4565443 33 7999999999996654
No 355
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.8e-07 Score=72.28 Aligned_cols=142 Identities=18% Similarity=0.119 Sum_probs=87.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
-++-++|+|+||.|||||++.|..+- ... ++.+.......+.++...++|.++|. +..++. ...+-||.++++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~-tk~---ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRF-TKQ---TIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHH-HHh---hhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEE
Confidence 46889999999999999998887642 111 11111122224567778999999984 333222 234568999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
+|.+-.-..+. ..|+..+..+ +.|- +-|+|..|+..+.... ....-...-+-|..-+....+|.+|-..
T Consensus 141 IdgnfGfEMET--mEFLnil~~H--GmPrvlgV~ThlDlfk~~stL-----r~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 141 IDGNFGFEMET--MEFLNILISH--GMPRVLGVVTHLDLFKNPSTL-----RSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eccccCceehH--HHHHHHHhhc--CCCceEEEEeecccccChHHH-----HHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99876544444 3566777766 5664 5688999998654200 0000001124455666555788887764
No 356
>PRK12288 GTPase RsgA; Reviewed
Probab=98.50 E-value=1.9e-07 Score=73.21 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=34.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC-CCCCC------ceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFP-TDYVP------TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 69 (197)
++++|.+|||||||+|+|.+.... ....+ ..++....-+.+.+. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 789999999999999999975321 11111 111222222333322 1389999987754
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=4.4e-07 Score=63.24 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=35.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 64 (197)
...+++++|.+|+|||||+|.+.+... .. ....++..... ...+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 457899999999999999999998542 22 22233322221 2222 2467999999
No 358
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=7.1e-07 Score=68.23 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=100.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC----------CCCC-----CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN----------TFPT-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 71 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 71 (197)
.++|.-||+-.-|||||...+..- .|.+ +......+.-..++.++-.....-=.|+|||.+|-..
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN 133 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN 133 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence 578999999999999999776531 1110 1111112222333333333334446899999999776
Q ss_pred cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
.-.-..+.|++|+|+.++|..-...-.+.+ +.+...-..++++.||.|+.++.+ ....-+-+.+++...+
T Consensus 134 MItGaaqMDGaILVVaatDG~MPQTrEHlL---LArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RElLse~ 203 (449)
T KOG0460|consen 134 MITGAAQMDGAILVVAATDGPMPQTREHLL---LARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRELLSEF 203 (449)
T ss_pred hhcCccccCceEEEEEcCCCCCcchHHHHH---HHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHHHHHHc
Confidence 666677899999999999975544431111 112221235788889999985543 1123445677888877
Q ss_pred CC----cEEEEeccc---CCCC-------HHHHHHHHHHHHcCCCC
Q 029177 152 GA----AVYIECSSK---TQQN-------VKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 152 ~~----~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~~~~~ 183 (197)
+. .|++.-||. ++.+ |..+++++-.++..+.+
T Consensus 204 gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R 249 (449)
T KOG0460|consen 204 GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER 249 (449)
T ss_pred CCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc
Confidence 63 578876665 3422 45555555555544443
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.49 E-value=3.3e-07 Score=71.27 Aligned_cols=57 Identities=25% Similarity=0.243 Sum_probs=38.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 66 (197)
..++++++|-||||||||||+|.+.... ....|. .+.....+.++.. +.++||||--
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG-~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPG-TTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCc-eecceEEEEcCCC---eEEecCCCcC
Confidence 3578999999999999999999996541 222221 2222233344442 6799999953
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.49 E-value=3e-07 Score=70.12 Aligned_cols=100 Identities=20% Similarity=0.101 Sum_probs=64.7
Q ss_pred cCCCcC-cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc
Q 029177 62 TAGQED-YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT 140 (197)
Q Consensus 62 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 140 (197)
.|||-. ........+..+|++++|+|+.++.+.... .+...+ .+.|+++|.||+|+.+... .
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~-----------~ 66 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV-----------T 66 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH-----------H
Confidence 355532 223344567899999999999877554332 222333 2579999999999954211 1
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 141 TAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
....+.....+. +++.+||+++.|++++.+.+.+.+..
T Consensus 67 -~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 67 -KQWLKYFEEKGI-KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred -HHHHHHHHHcCC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 111111222343 78999999999999999999887643
No 361
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.49 E-value=8.8e-07 Score=67.66 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=59.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECC---------------eEEEEEEEecCCCcCcc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDYN 69 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~~~~ 69 (197)
..+++.+||.|+||||||.|.+...... .+++-++.+.-...+.+.+ ....++++|++|...-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 4679999999999999999999986554 4454455555555554432 23578999999965432
Q ss_pred cc-------cccCcCCCcEEEEEEECCC
Q 029177 70 RL-------RPLSYRGADVFLLAFSLIS 90 (197)
Q Consensus 70 ~~-------~~~~~~~~~~~i~v~d~~~ 90 (197)
+. ....++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 21 2223678999999888754
No 362
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=6.2e-07 Score=74.77 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=75.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC---------CCC----ceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---------YVP----TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 69 (197)
...-+++++.+-.-|||||...|... ..... +.. ...+--+..+..--+.+.+.++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 44567999999999999999888742 11110 000 0011111112222245788899999999999
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 122 (197)
+......+-+|++++++|+...-..... ..+++. .. .+...++|.||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~-~~--~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQA-WI--EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHH-HH--ccCceEEEEehhh
Confidence 9999999999999999999876544443 222222 11 2567888999999
No 363
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.45 E-value=1.3e-05 Score=63.34 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=94.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-----------------CCCCCCCCce----eeee----eEEEEE-CCeEEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN-----------------TFPTDYVPTV----FDNF----SANVVV-DGSTVNLGL 59 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~-----------------~~~~~~~~~~----~~~~----~~~~~~-~~~~~~~~~ 59 (197)
..+=|.||||..+|||||+.||..- .++.+..+.+ ...+ ...+.+ ++-.+.+++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 3467899999999999999999742 2222222221 1111 123444 466789999
Q ss_pred EecCC--------CcC--cccc--cccC-----------------cCC--CcEEEEEEECC----ChhhHHHHHHHHHHH
Q 029177 60 WDTAG--------QED--YNRL--RPLS-----------------YRG--ADVFLLAFSLI----SKASYENISKKWIPE 104 (197)
Q Consensus 60 ~D~~g--------~~~--~~~~--~~~~-----------------~~~--~~~~i~v~d~~----~~~s~~~~~~~~~~~ 104 (197)
.|+-| +.+ -..+ ++++ ++. -=++++.-|.+ .++++..+..+..+.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99887 111 0000 1111 111 12455544443 256777777888888
Q ss_pred HhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC--CCCHHHHHHHHH
Q 029177 105 LRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT--QQNVKTVFDAAI 175 (197)
Q Consensus 105 ~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~ 175 (197)
|+.. +.|++++.|-.+-... -..+.+.++..+|+. |.+.+++.+ .+.+..++..+.
T Consensus 176 Lk~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 176 LKEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHH
Confidence 8887 8999999998775432 345667788888997 788877664 355555555544
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.43 E-value=1.2e-06 Score=61.98 Aligned_cols=88 Identities=19% Similarity=0.122 Sum_probs=59.2
Q ss_pred cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
....+.++|++++|+|++++...... .+...+ .+.|+++|+||+|+..... . ....++.+..
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~----------~--~~~~~~~~~~ 74 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK----------T--KKWLKYFESK 74 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH----------H--HHHHHHHHhc
Confidence 34457889999999999877553322 122222 3579999999999954211 1 1111222222
Q ss_pred CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 152 GAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+ ..++.+||++++|++++...+...+
T Consensus 75 ~-~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 G-EKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred C-CeEEEEECCCcccHHHHHHHHHHHH
Confidence 3 3689999999999999999998875
No 365
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.42 E-value=4.6e-06 Score=61.66 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=57.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-------ccccCcCCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGA 79 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~ 79 (197)
-+|.++|-|.+||||++..+.+..- ..+|..++-.........++ -.+++.|.||..+-.. ..-...+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999887532 23454554444333344455 5788999999543221 122235779
Q ss_pred cEEEEEEECCChhhHH
Q 029177 80 DVFLLAFSLISKASYE 95 (197)
Q Consensus 80 ~~~i~v~d~~~~~s~~ 95 (197)
+.+++|.|+-.+-+-.
T Consensus 138 nli~~vld~~kp~~hk 153 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHK 153 (358)
T ss_pred cEEEEEeeccCcccHH
Confidence 9999999998765433
No 366
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.42 E-value=4.3e-06 Score=66.94 Aligned_cols=124 Identities=16% Similarity=0.125 Sum_probs=83.7
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCc
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----------SYENISKKWIPELRHYA-PTVPIVLVGTKQDL 123 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~ 123 (197)
..+.++|++|+...+..|.+++.++++++||+++++.+ .+.+....|...+.... .+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 57789999999999999999999999999999987643 24444355655555443 68999999999997
Q ss_pred ccchhhhc------CCCC-CC-CccHHHHHHHHHHc-----------CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 124 REDKQYLI------NHPG-AT-PITTAQGEELKKLI-----------GAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 124 ~~~~~~~~------~~~~-~~-~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
....-... .+.. .. .-..+.+..+.... ..+.+..++|.+.+.++.+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 75421110 1111 11 13344555444321 222455799999999999999887653
No 367
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=7.9e-08 Score=75.22 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=86.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc--CCC------CCC---------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS--NTF------PTD---------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 68 (197)
+.-+|.++.+-.+||||...|++. +.. .+. ......+..+..+.++.+.+.+.++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 344789999999999999999875 111 110 001112223444556666788999999999999
Q ss_pred ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
+-....+++-.|+++.|||.+-.-....+ ..|.+.-+- ++|-+.+.||+|....
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk~---~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKF---KIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhcccc---CCchhhhhhhhhhhhh
Confidence 99999999999999999999987776666 667654332 6899999999998764
No 368
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.9e-06 Score=67.70 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=70.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeE---------------------------------------
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSA--------------------------------------- 46 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~--------------------------------------- 46 (197)
..||++.|..++||||++|+++..+..++... ++..+...
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 57999999999999999999987554333222 21111100
Q ss_pred ----EEEECCeE-----EEEEEEecCCCcC---cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE
Q 029177 47 ----NVVVDGST-----VNLGLWDTAGQED---YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI 114 (197)
Q Consensus 47 ----~~~~~~~~-----~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ 114 (197)
.+.+++.. =.+.+.|.||..- ..+-...+...+|++|+|.++.+.-+..+ +.++....+. ..-+
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kpni 264 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KPNI 264 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CCcE
Confidence 00011110 0345678888542 22333344568999999999888777666 4555555543 3335
Q ss_pred EEEeeCCCcccc
Q 029177 115 VLVGTKQDLRED 126 (197)
Q Consensus 115 iiv~nK~D~~~~ 126 (197)
.|+-||.|...+
T Consensus 265 FIlnnkwDasas 276 (749)
T KOG0448|consen 265 FILNNKWDASAS 276 (749)
T ss_pred EEEechhhhhcc
Confidence 566688898754
No 369
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=3.5e-06 Score=66.72 Aligned_cols=84 Identities=20% Similarity=0.385 Sum_probs=57.0
Q ss_pred CCCc-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH----HHHHHc
Q 029177 77 RGAD-VFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE----ELKKLI 151 (197)
Q Consensus 77 ~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 151 (197)
...+ .+++|+|+.|... .|...+.+...+.|+++|+||+|+.... ...+... .+++..
T Consensus 67 ~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKEL 129 (365)
T ss_pred cccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhc
Confidence 3444 8899999987432 2333444433478999999999996421 2223333 334555
Q ss_pred CCc--EEEEecccCCCCHHHHHHHHHHH
Q 029177 152 GAA--VYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 152 ~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
+.. .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 542 57899999999999999999765
No 370
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.34 E-value=3.7e-06 Score=62.19 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=52.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC--CCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcccc------cc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD--YVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRL------RP 73 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~------~~ 73 (197)
....-|+|+|++++|||+|+|++++. .|... ..+++........... +....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567999999999999999999998 66322 2233322222111121 23367889999997543221 11
Q ss_pred cCcCC--CcEEEEEEECCChh
Q 029177 74 LSYRG--ADVFLLAFSLISKA 92 (197)
Q Consensus 74 ~~~~~--~~~~i~v~d~~~~~ 92 (197)
..+.. ++++|+..+.+...
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 12222 67777777665443
No 371
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=7.4e-07 Score=69.94 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=33.8
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CCCC-----ceeeeeeEEEEECCeEEEEEEEecCCCcCc
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFPT--DYVP-----TVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 68 (197)
++++|.+|||||||+|+|....... .... ..++....-+.+.+.. .++||||-..+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 7999999999999999999743211 1111 1112222223343322 58999997653
No 372
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.6e-05 Score=57.51 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=97.5
Q ss_pred EEEEECCCCC--CHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCC-CcCcccccccCcCCCcEEEE
Q 029177 9 KCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG-QEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 9 ki~vvG~~~~--GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g-~~~~~~~~~~~~~~~~~~i~ 84 (197)
-++|+|.+|| ||.+++.+|....|.++..+.. ...+..++........+.+.-.+- .+.+.. ......-..++++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-n~~~a~pl~a~vm 84 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-NAEIAEPLQAFVM 84 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-CcccccceeeEEE
Confidence 3678999999 9999999999887765543332 333333322211111122221111 111111 1112234568899
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccch-------hhh--------------------------
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDK-------QYL-------------------------- 130 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~-------~~~-------------------------- 130 (197)
+||.+..+.+..+ ..|+.-.... ... ++.++||.|....+ .+.
T Consensus 85 vfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 85 VFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEeccchhhhHHH-Hhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 9999999999998 8887543322 222 35678999976431 111
Q ss_pred -cCCCCCCCccHHHHHHHHHHcCCcEEEEecccC------------CCCHHHHHHHHHHHHc
Q 029177 131 -INHPGATPITTAQGEELKKLIGAAVYIECSSKT------------QQNVKTVFDAAIKVVL 179 (197)
Q Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~i~~~~~ 179 (197)
..++.........+++|+.+.++ .+++.++.+ ..|++.+|.++-..+.
T Consensus 162 llgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 01112222334567889999997 899988843 3588888888876553
No 373
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=8e-07 Score=66.58 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|.+|||||||+|+|.+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 5889999999999999999975
No 374
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.30 E-value=7.9e-06 Score=63.54 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=40.9
Q ss_pred EEEEEEecCCCcCcccccccCc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSY--RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
-.++|+|.+||+.|....-.-. +-.|..++++-++-.-- -.. +.-+...-. -++|+.+|.+|+|+...+
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmT-KEHLgLALa--L~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMT-KEHLGLALA--LHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-ecc-HHhhhhhhh--hcCcEEEEEEeeccCcHH
Confidence 4578999999999876533222 34577777766543211 001 111111111 168999999999988654
No 375
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.30 E-value=1e-06 Score=67.59 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=35.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc------eeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPT------VFDNFSANVVVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 69 (197)
-.++++|++|+|||||+|.|.+....... .+. ..+.....+...+. ..++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 36899999999999999999985332111 110 01111222333321 2489999987653
No 376
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.25 E-value=7e-06 Score=63.00 Aligned_cols=99 Identities=22% Similarity=0.150 Sum_probs=64.4
Q ss_pred cCCCcC-cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc
Q 029177 62 TAGQED-YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT 140 (197)
Q Consensus 62 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 140 (197)
.|||-. ........+..+|++++|+|+.++.+.... .+...+. +.|+++|.||+|+.+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~~----~kp~iiVlNK~DL~~~~~------------ 68 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKIIG----NKPRLLILNKSDLADPEV------------ 68 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHhC----CCCEEEEEEchhcCCHHH------------
Confidence 466532 222344567899999999999887654332 2223322 689999999999954211
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 141 TAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+...+..++.+. +++.+||+++.|++++.+.+...+.
T Consensus 69 ~~~~~~~~~~~~~-~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 69 TKKWIEYFEEQGI-KALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred HHHHHHHHHHcCC-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 1111122223343 7899999999999999999888764
No 377
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.25 E-value=5.8e-06 Score=74.53 Aligned_cols=110 Identities=24% Similarity=0.212 Sum_probs=62.3
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCC--C--c--eeeeeeEEEEECCeEEEEEEEecCCCcCc--------ccccccC
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFPTDYV--P--T--VFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLS 75 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~~~~~--~--~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~ 75 (197)
.+|||++|+||||++++- +-.++-... . + ......-...+.+ .-.++|++|..-. ...|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999876 333322110 0 0 0000000111222 2348999994311 1224433
Q ss_pred c---------CCCcEEEEEEECCChhh---------HHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcc
Q 029177 76 Y---------RGADVFLLAFSLISKAS---------YENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124 (197)
Q Consensus 76 ~---------~~~~~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~ 124 (197)
+ +-.|++|+++|+.+--. ...+ ...++.+.... -++||.++.||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 3 34799999999876432 1122 22234444443 589999999999976
No 378
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.24 E-value=2.5e-06 Score=64.72 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=36.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC------CCCCC-CCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT------FPTDY-VPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~------~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~ 69 (197)
-.+++|.+|||||||+|+|.... ..... .+..++....-+.++ +. .+.||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCccC
Confidence 47889999999999999998632 11111 222234444445553 32 279999987654
No 379
>PRK01889 GTPase RsgA; Reviewed
Probab=98.24 E-value=1.2e-05 Score=63.58 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=58.8
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..++|.+++|+++...-+...+ ++++..+... ++|.+||+||+|+.++.. +....+.......+
T Consensus 110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~~-------------~~~~~~~~~~~g~~ 173 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDAE-------------EKIAEVEALAPGVP 173 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCHH-------------HHHHHHHHhCCCCc
Confidence 5789999999999754444444 6666666654 788899999999965311 11122222222348
Q ss_pred EEEecccCCCCHHHHHHHHH
Q 029177 156 YIECSSKTQQNVKTVFDAAI 175 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~ 175 (197)
++.+|+++++|++++..++.
T Consensus 174 Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 174 VLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred EEEEECCCCccHHHHHHHhh
Confidence 89999999999999988874
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.23 E-value=1.2e-05 Score=62.45 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=54.8
Q ss_pred EEEEEEEecCCCcCcccc-----------c-ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 029177 54 TVNLGLWDTAGQEDYNRL-----------R-PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121 (197)
Q Consensus 54 ~~~~~~~D~~g~~~~~~~-----------~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 121 (197)
.+.+.++||||....... . ...-...+..++|.|++.... .+ ... ....+. --+--+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~-~~a-~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--AL-SQA-KAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HH-HHH-HHHHhh--CCCCEEEEECC
Confidence 367889999997543221 0 011134678899999985432 22 111 111111 12346788999
Q ss_pred CcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 171 (197)
|.... .-.+..+....+. |+..++ +|++++++-
T Consensus 270 D~t~~--------------~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK--------------GGVVFAIADELGI-PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC--------------ccHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence 96432 2234566677776 777776 788886653
No 381
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.18 E-value=3.1e-06 Score=66.95 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=35.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC------CC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF------PT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
.++.++|.+|||||||+|++.+... .. ....++... ..+.+++ .+.++||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCCC
Confidence 3799999999999999999997432 11 222222221 1233322 245999999654
No 382
>PRK00098 GTPase RsgA; Reviewed
Probab=98.17 E-value=2.9e-06 Score=65.40 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++++|++|||||||+|.|.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998753
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=98.16 E-value=6.5e-06 Score=64.22 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=54.1
Q ss_pred EEEEEEecCCCcCccccc----ccC--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh
Q 029177 55 VNLGLWDTAGQEDYNRLR----PLS--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 128 (197)
+.+.++||+|........ ..+ .-+.|.+++|.|++...........|...+ + +--++.||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-----~-~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-----G-IDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-----C-CCEEEEeeecCCCCc-
Confidence 568899999976432111 111 125788899999876543222212222111 1 235678999986532
Q ss_pred hhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177 129 YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 171 (197)
-.+..++...+. |+..++ +|++++++.
T Consensus 296 -------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 -------------GAALSIAYVIGK-PILFLG--VGQGYDDLI 322 (336)
T ss_pred -------------cHHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence 233455555665 677776 788887664
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.15 E-value=4.8e-06 Score=65.99 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=34.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 66 (197)
-++.++|.+|||||||+|+|..... ......|+.. ...+.+++. ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCcc
Confidence 3789999999999999999986431 1122222222 122333332 3599999964
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.15 E-value=9e-06 Score=61.82 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=55.2
Q ss_pred EEEEEEEecCCCcCccccc------------ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 029177 54 TVNLGLWDTAGQEDYNRLR------------PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121 (197)
Q Consensus 54 ~~~~~~~D~~g~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 121 (197)
.+.+.++||||........ ...-..+|..++|+|++... +.. ... ..+.+.. -+--+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~-~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQA-KVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHH-HHHHhhC--CCCEEEEEcc
Confidence 3678899999976432211 01123478999999997532 222 111 2222211 1346788999
Q ss_pred CcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 171 (197)
|..... -.+..+....+. |+..++ +|++++++-
T Consensus 228 De~~~~--------------G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAKG--------------GIILSIAYELKL-PIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCCc--------------cHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence 986532 234555666675 677776 778776653
No 386
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.13 E-value=6.3e-05 Score=61.32 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=49.2
Q ss_pred EEEEEecCCCcC-------------cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 029177 56 NLGLWDTAGQED-------------YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQ 121 (197)
Q Consensus 56 ~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~ 121 (197)
.+.+.|.||... ...+...+..+.+++|+|+--..-+.-... .-+.+...- .+...|+|.||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn---VTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI---VTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh---HHHHHHhcCCCCCeeEEEEeec
Confidence 456889999432 123345567899999999854333222222 122333222 267889999999
Q ss_pred CcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177 122 DLREDKQYLINHPGATPITTAQGEELKK 149 (197)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
|+.+.+. .+++..+....
T Consensus 490 DlAEknl----------A~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNV----------ASPSRIQQIIE 507 (980)
T ss_pred chhhhcc----------CCHHHHHHHHh
Confidence 9988654 56666665544
No 387
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.11 E-value=5.4e-06 Score=60.36 Aligned_cols=127 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhh-CCCCCEEEEeeCCC
Q 029177 54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS----------YENISKKWIPELRHY-APTVPIVLVGTKQD 122 (197)
Q Consensus 54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D 122 (197)
.+.|++.|.+|+...+..|-+++.+.-.+++++..+..+. -++....+...+.-. +.+.++|++.||-|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 4667788888888888888888887777776666554432 222211222222111 25889999999999
Q ss_pred cccchhhh------cCCCCCCCccHHHHHHHHHHc-----C----CcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 123 LREDKQYL------INHPGATPITTAQGEELKKLI-----G----AAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 123 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+.+..... .++.....-....+++|.... + .+--..+.|.+-+||.-+|.++.+.++.
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 98764321 122211122233344443322 1 1111236677789999999998887754
No 388
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=4.4e-06 Score=63.17 Aligned_cols=166 Identities=18% Similarity=0.174 Sum_probs=97.5
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCCC--ceeeee----------------------------eEEEE
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNF----------------------------SANVV 49 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~----------------------------~~~~~ 49 (197)
+....++|.-+|+.--||||++..+++- +|-.+... |+...| .....
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 4456799999999999999999877641 11000000 000000 00111
Q ss_pred ECCe------EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 029177 50 VDGS------TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----KASYENISKKWIPELRHYAPTVPIVLVGT 119 (197)
Q Consensus 50 ~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~iiv~n 119 (197)
..+. ...+-|.|+|||+-.-+....-..-.|++++++..+. +.+-+.+.. -.+.. -..++++-|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa---veiM~---LkhiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA---VEIMK---LKHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH---HHHhh---hceEEEEec
Confidence 1111 1345689999998755443333344577777776544 233333311 11111 246899999
Q ss_pred CCCcccchhhhcCCCCCCCccHHHHHHHHHHc---CCcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 120 KQDLREDKQYLINHPGATPITTAQGEELKKLI---GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 120 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
|.|+....+. ....++.+.|.+.. ++ |++.+||.-+.|++-+.+.|+..+.-+.+
T Consensus 188 KiDli~e~~A--------~eq~e~I~kFi~~t~ae~a-PiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 188 KIDLIKESQA--------LEQHEQIQKFIQGTVAEGA-PIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred hhhhhhHHHH--------HHHHHHHHHHHhccccCCC-ceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 9999765430 12224444555443 44 89999999999999999999998865543
No 389
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.07 E-value=1.7e-05 Score=55.39 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999998865
No 390
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.06 E-value=2.2e-05 Score=62.97 Aligned_cols=66 Identities=12% Similarity=0.016 Sum_probs=38.2
Q ss_pred EEEEEEEecCCCcCccccc----cc--CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 54 TVNLGLWDTAGQEDYNRLR----PL--SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 54 ~~~~~~~D~~g~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
.+.+.|+||||........ .. .....+-+++|+|++-....... ...+.+. --+--+|.||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCC
Confidence 3678899999965432110 00 12356789999998755333222 1222221 124567789999864
No 391
>PRK13695 putative NTPase; Provisional
Probab=98.05 E-value=0.0001 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
+||+++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999988654
No 392
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=9.5e-06 Score=65.26 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=78.2
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcC------------CCCCCCCC---ceeeeeeEEEE----------------
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN------------TFPTDYVP---TVFDNFSANVV---------------- 49 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~------------~~~~~~~~---~~~~~~~~~~~---------------- 49 (197)
|++..+.-++.+|.+..-|||||...|... +|.+.... ...+.-+.-+.
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 445555567899999999999999988752 22111000 00000010000
Q ss_pred ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 50 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
-++..+-+.++|.|||-+|++.....++-.|++++|+|..+.-....- ..+.+.+.+. +.=+++.||.|..
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA 163 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence 023457788999999999999999999999999999998876554443 3344555543 3335668999954
No 393
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.91 E-value=5.7e-05 Score=42.68 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 029177 77 RGADVFLLAFSLISKA--SYENISKKWIPELRHYAPTVPIVLVGTKQD 122 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 122 (197)
+-.++++|++|++..- +++.. ..++..++..+++.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 3468999999998764 45555 566788888888999999999998
No 394
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.88 E-value=1.8e-05 Score=63.69 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=39.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
.+.|.+||-|||||||.||.|.+.+-..- ..|. .+.+-.++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 58899999999999999999999765322 2222 344455555555 3458999995
No 395
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=3.7e-05 Score=68.33 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=60.3
Q ss_pred EEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeee-eEEE--EECCeEEEEEEEecCCCcCcc--------cccccC--
Q 029177 10 CVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNF-SANV--VVDGSTVNLGLWDTAGQEDYN--------RLRPLS-- 75 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~-~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~D~~g~~~~~--------~~~~~~-- 75 (197)
-+|||++|+||||++..--.. .+............ ...+ .+.+ .-.++||+|..... ..|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 478999999999999432211 11111111110000 1111 1112 34578999843221 123322
Q ss_pred -------cCCCcEEEEEEECCChhhHH---------HHHHHHHHHHhhhC-CCCCEEEEeeCCCccc
Q 029177 76 -------YRGADVFLLAFSLISKASYE---------NISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125 (197)
Q Consensus 76 -------~~~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~ 125 (197)
.+-.|++|+.+|+++--+.. .+ ..-++.+.... -..|+.+++||.|+..
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~L-R~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTL-RARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHH-HHHHHHHHHhhccCCceEEEEecccccc
Confidence 34679999999997643211 12 11133444433 5899999999999875
No 396
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.85 E-value=7e-05 Score=60.55 Aligned_cols=64 Identities=19% Similarity=0.091 Sum_probs=36.7
Q ss_pred EEEEEEecCCCcCccccc------ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCccc
Q 029177 55 VNLGLWDTAGQEDYNRLR------PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLRE 125 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~ 125 (197)
..+.++||+|........ -..+..+|.+++|+|++.... .. . ....+.. .+++ -+|.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~--av-~-~a~~F~~---~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ--AK-N-QAKAFHE---AVGIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH--HH-H-HHHHHHh---cCCCCEEEEecccCCC
Confidence 367899999976532110 011335789999999876532 11 1 1122222 2444 46779999754
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=0.00031 Score=53.59 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=67.3
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK 149 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.+.+....+.|-.++++.+.+|+--..+..+++-..... ++.-+|+.||+|+.++.. ...++......
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~ 138 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLREYE 138 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHHHHH
Confidence 333444556788888888888875444446776665554 777778899999987543 22134455566
Q ss_pred HcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 150 LIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 150 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
..+- +.+.+|++++++++++...+...
T Consensus 139 ~~gy-~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 139 DIGY-PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred hCCe-eEEEecCcCcccHHHHHHHhcCC
Confidence 6775 89999999999999999887654
No 398
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.78 E-value=3.3e-05 Score=56.45 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcCccccccc------CcCCCcEEE---EEEEC---CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPL------SYRGADVFL---LAFSL---ISKASYENISKKWIPELRHYA-PTVPIVLVGTKQ 121 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i---~v~d~---~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~ 121 (197)
-...++|+|||-++...+.. .++..+.=+ -++|. +++..+... .+ -.+.... =..|=|=|..|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL-~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LL-VSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HH-HHHHHHHhhcccchhhhhHh
Confidence 45669999999654322111 122233323 33343 566666554 22 2222221 267888888999
Q ss_pred Ccccchhhh--------------------cCCCCCC--CccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHH
Q 029177 122 DLREDKQYL--------------------INHPGAT--PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAA 174 (197)
Q Consensus 122 D~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 174 (197)
|+....... ...+..+ .--.+..-++...++.+.|...+..+.+++-.+...|
T Consensus 174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~I 248 (290)
T KOG1533|consen 174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTI 248 (290)
T ss_pred HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHH
Confidence 987654311 0011100 1122444556666676666666666666665555544
No 399
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.75 E-value=0.00016 Score=49.43 Aligned_cols=107 Identities=15% Similarity=0.059 Sum_probs=60.9
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC
Q 029177 11 VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS 90 (197)
Q Consensus 11 ~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (197)
+.-|.+|+||||+...+...--. ....+....... ....-.+.+.++|+|+... ......+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh
Confidence 34578999999998655432110 111111000000 0011116788999998532 233456888999999998764
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 91 KASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
.++... ...++.+.......++.+|.|+.+..
T Consensus 79 -~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 444444 34445554433456788999999754
No 400
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00022 Score=56.51 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.++++|++|+||||++..|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999988865
No 401
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.70 E-value=3.2e-05 Score=51.28 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 402
>PRK08118 topology modulation protein; Reviewed
Probab=97.68 E-value=3.8e-05 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
||+|+|++|||||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988763
No 403
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.00017 Score=54.17 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=42.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE---E--EEECCeEEEEEEEecCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA---N--VVVDGSTVNLGLWDTAG 64 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~D~~g 64 (197)
-.|+|+-||..|.|||||+..|++..|.....+........ + +.-.+-.+.+++.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 36899999999999999999999998865544333221111 1 11235567889999998
No 404
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.65 E-value=7.5e-05 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
+..-|+|+|++|+|||||+++|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566889999999999999999754
No 405
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.65 E-value=5.7e-05 Score=54.33 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCCEEEEeeCCCcccchhhh-------------cCCCCCCCcc------HHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177 111 TVPIVLVGTKQDLREDKQYL-------------INHPGATPIT------TAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 111 ~~p~iiv~nK~D~~~~~~~~-------------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 171 (197)
.+|-|=|.+|+|+....... ....+...-+ .....++...++.+.|++....+.++++.++
T Consensus 164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL 243 (273)
T KOG1534|consen 164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL 243 (273)
T ss_pred cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence 78999999999988652211 0001111111 1234456667888899999999999999998
Q ss_pred HHHHHHHc
Q 029177 172 DAAIKVVL 179 (197)
Q Consensus 172 ~~i~~~~~ 179 (197)
..|-.++.
T Consensus 244 ~~ID~aiQ 251 (273)
T KOG1534|consen 244 SYIDDAIQ 251 (273)
T ss_pred HHHHHHHH
Confidence 88766553
No 406
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.63 E-value=4.9e-05 Score=54.10 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
||+|+|+|||||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 407
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.62 E-value=6.4e-05 Score=58.85 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=38.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
..+++.|+|-||+||||+||+|..... .....|+ .+..-..+.++. .+.|.|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pG-vT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPG-VTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCCcc-chhhhhheeccC---CceeccCCce
Confidence 468999999999999999999998654 2222222 222233344443 5669999995
No 408
>PRK07261 topology modulation protein; Provisional
Probab=97.62 E-value=5.1e-05 Score=53.72 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
||+|+|++|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999988653
No 409
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.61 E-value=7e-05 Score=54.74 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
||+ .+...|+|.|++|||||||.+.+...
T Consensus 1 ~~~-~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 1 MMM-KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCC-CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 444 35789999999999999999888764
No 410
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.61 E-value=0.00015 Score=54.45 Aligned_cols=93 Identities=6% Similarity=0.100 Sum_probs=47.7
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--------C
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--------A 153 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 153 (197)
..+++|..+... ..+..+....... +.|.+++.-.++...-..+..... ...+.+....+...+. .
T Consensus 69 ~~VI~D~~~~~~--~~r~~l~~~ak~~--~~~~~~I~l~~p~e~~~~Rn~~R~--~~~~~~~i~~l~~r~e~p~~~~~wd 142 (249)
T TIGR03574 69 YSVIVDDTNYYN--SMRRDLINIAKEY--NKNYIIIYLKAPLDTLLRRNIERG--EKIPNEVIKDMYEKFDEPGTKYSWD 142 (249)
T ss_pred CeEEEeccchHH--HHHHHHHHHHHhC--CCCEEEEEecCCHHHHHHHHHhCC--CCCCHHHHHHHHHhhCCCCCCCCcc
Confidence 346677664321 1213333444433 567777766666543322222111 1234444445544332 1
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.+.+.+.......++++...+...+..
T Consensus 143 ~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 143 LPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred CceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 266777665445778999988886543
No 411
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00022 Score=56.15 Aligned_cols=164 Identities=13% Similarity=0.055 Sum_probs=90.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CC----------------------------CCCCCCceeeeeeEEEEECCeE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TF----------------------------PTDYVPTVFDNFSANVVVDGST 54 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (197)
...++++++|+..+||||+-..+... .. ..+......+.-.....++-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 45789999999999999998655421 00 0000000000001111122223
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---HHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccchhhh
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YENIS-KKWIPELRHYAPTVPIVLVGTKQDLREDKQYL 130 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 130 (197)
-.+++.|+|||..|-...-.-..+||..++|+++.-.+- |+.-- .+=...+.....-...|++.||+|-.....
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW-- 234 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW-- 234 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc--
Confidence 577899999999887766666778999999988743321 11110 000111122222457889999999764321
Q ss_pred cCCCCCCCccHHHHHHHHHHcC-----CcEEEEecccCCCCHHHHHH
Q 029177 131 INHPGATPITTAQGEELKKLIG-----AAVYIECSSKTQQNVKTVFD 172 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~ 172 (197)
+.+...-..+....+.+..| ...++++|..+|.++++.-.
T Consensus 235 --s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 --SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred --chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 00000012233444444332 34688999999999887653
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00054 Score=56.44 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.|+++|+.|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999977764
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.56 E-value=0.00073 Score=54.66 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=44.8
Q ss_pred EEEEEEecCCCcCcccc-cc---c--CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccch
Q 029177 55 VNLGLWDTAGQEDYNRL-RP---L--SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDK 127 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~-~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~ 127 (197)
+.+.++||+|....... .. . ..-..+.+++|+|.+........ ...+.. .+++ -+|.||.|.....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~----a~~F~~---~~~i~giIlTKlD~~~rg 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNT----AKAFNE---ALGLTGVILTKLDGDARG 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHH----HHHHHh---hCCCCEEEEeCccCcccc
Confidence 66889999996543211 00 0 01246778999998754322222 222222 2333 4667999975422
Q ss_pred hhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 128 QYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
-.+.......+. |+..+
T Consensus 257 --------------G~alsi~~~~~~-PI~fi 273 (433)
T PRK10867 257 --------------GAALSIRAVTGK-PIKFI 273 (433)
T ss_pred --------------cHHHHHHHHHCc-CEEEE
Confidence 225666666675 54443
No 414
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.56 E-value=0.00015 Score=51.19 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=31.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEec
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (197)
||++.|++|+|||||++++...--... -...-.+...+.-++..+-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~--~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG--LPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC--GGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC--CccceEEeecccCCCceEEEEEEEC
Confidence 689999999999999999876321100 1112333444444555566666666
No 415
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.55 E-value=6.2e-05 Score=51.38 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|+++|+|||||||+++++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998743
No 416
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.00039 Score=47.04 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~ 31 (197)
-.+++.|++|+|||++++.+....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988764
No 417
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.53 E-value=0.00019 Score=54.66 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=34.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC------CCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
..+.++|+|.||+|||||+|.+........ ..+.........+.+... -.+++.||||-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence 357899999999999999998765322111 111111112222333222 24679999995
No 418
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.52 E-value=0.00011 Score=51.91 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.0
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
|+.....-+.++|.+|+|||||++++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 45555567899999999999999998864
No 419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.52 E-value=0.00094 Score=52.96 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029177 9 KCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~ 28 (197)
.|++|||.||||||-+-.|-
T Consensus 205 vi~LVGPTGVGKTTTlAKLA 224 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLA 224 (407)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999885543
No 420
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.51 E-value=0.00012 Score=53.40 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
|.+++..-|+++|++|+|||||++.+.+
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4455667899999999999999998876
No 421
>PRK14530 adenylate kinase; Provisional
Probab=97.51 E-value=0.0001 Score=54.15 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998864
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.50 E-value=0.00034 Score=56.50 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=45.9
Q ss_pred EEEEEEecCCCcCccccccc------CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccch
Q 029177 55 VNLGLWDTAGQEDYNRLRPL------SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDK 127 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~ 127 (197)
+.+.++||||........-. ..-..+.+++|+|++...... .+...+... +++ =+|.||.|.....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~----~~a~~f~~~---v~i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAV----NTAKTFNER---LGLTGVVLTKLDGDARG 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHH----HHHHHHHhh---CCCCEEEEeCccCcccc
Confidence 56889999996543211000 022478889999987543222 222333322 233 4668999965422
Q ss_pred hhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 128 QYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
-.+..++...+. |+..+
T Consensus 256 --------------G~~lsi~~~~~~-PI~fi 272 (428)
T TIGR00959 256 --------------GAALSVRSVTGK-PIKFI 272 (428)
T ss_pred --------------cHHHHHHHHHCc-CEEEE
Confidence 225666777775 55443
No 423
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.49 E-value=0.0001 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=19.9
Q ss_pred EecccCCCCHHHHHHHHHHHHcC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.+||.+.+-+.|+++.+.+.+..
T Consensus 163 PTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHc
Confidence 39999999999999999887743
No 424
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.48 E-value=0.00013 Score=42.19 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
..++.|+.|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999988764
No 425
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.47 E-value=0.00086 Score=42.12 Aligned_cols=71 Identities=23% Similarity=0.225 Sum_probs=44.2
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-cccCcCCCcEEEEEEEC
Q 029177 10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFLLAFSL 88 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 88 (197)
+++.|.+|+||||+...+...--...+ ....++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999777653211111 111122 5668999986543221 13456678999998887
Q ss_pred CChhh
Q 029177 89 ISKAS 93 (197)
Q Consensus 89 ~~~~s 93 (197)
+....
T Consensus 69 ~~~~~ 73 (99)
T cd01983 69 EALAV 73 (99)
T ss_pred chhhH
Confidence 65533
No 426
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.46 E-value=8e-05 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 427
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.45 E-value=0.00015 Score=51.99 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.=|+|+|++|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999999875
No 428
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.44 E-value=0.00015 Score=43.26 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988765
No 429
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.43 E-value=0.00015 Score=53.76 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.8
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.-...+||+|+|+|||||||+...|..
T Consensus 2 ~~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 2 KLKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999988865
No 430
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.39 E-value=0.00084 Score=47.57 Aligned_cols=44 Identities=20% Similarity=0.112 Sum_probs=29.2
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 80 DVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
|++++++|+.++.+-.. ..+.+.+.....+.|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999988744322 233333211123689999999999964
No 431
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00023 Score=51.78 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
||.+.. -|+++|++|+|||||++.+.+.
T Consensus 1 ~~~~g~--~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 1 MMRRGL--LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCCC--EEEEECCCCCCHHHHHHHHHhh
Confidence 565543 5899999999999999988764
No 432
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.36 E-value=0.0019 Score=47.46 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=33.4
Q ss_pred ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
+...+++|.+++|+|.+-+ ++..+ .+......+. .-.++.+|+||.|..
T Consensus 150 Rg~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred cccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence 3456789999999998755 44444 4443333333 237899999999975
No 433
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.36 E-value=0.00016 Score=53.09 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++|+|++|||||||++-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999888653
No 434
>PRK06217 hypothetical protein; Validated
Probab=97.33 E-value=0.0002 Score=51.25 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 435
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.30 E-value=0.00023 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999888764
No 436
>PRK01889 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00025 Score=56.14 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
+++++|.+|+|||||+|.+.+.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6899999999999999999874
No 437
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.29 E-value=0.00022 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999887653
No 438
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=2.6e-05 Score=57.73 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=83.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCe--EEEEEEEecCCCcCcccccccC-----cCC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLS-----YRG 78 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~-----~~~ 78 (197)
...-|++.|.. ||||+|++++.+.- ....|+....|+......+. .-...+|+.+|......+..-- ++.
T Consensus 44 ~E~~I~~~Gn~--~~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 44 FEFFIGSKGNG--GKTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred ceeEEEEecCC--ceeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 45678888877 45999999988653 23345554444443333332 2245689999976654332222 222
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHH--------------------------Hhhh----C--------CCCCEEEEeeC
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPE--------------------------LRHY----A--------PTVPIVLVGTK 120 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~--------------------------~~~~----~--------~~~p~iiv~nK 120 (197)
=.+|++.|.++++.+....+..++. +... . -.+|++||+.|
T Consensus 121 -~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 121 -FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred -hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 2567889999986543221211111 1110 0 14699999999
Q ss_pred CCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 121 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
.|....-+ ++++.-...-.+.++..+|+ .....|++
T Consensus 200 YDvFq~Fe-----sekRkH~C~~LRf~Ah~yGa-aLlmfSsk 235 (363)
T KOG3929|consen 200 YDVFQDFE-----SEKRKHICKTLRFVAHYYGA-ALLMFSSK 235 (363)
T ss_pred hhhhcccc-----HHHHHHHHHHHHHHHHHhhh-HHHHHHHh
Confidence 99765321 22222333445666777776 45666666
No 439
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00017 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.=+++.||+|||||||+++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999998864
No 440
>PRK03839 putative kinase; Provisional
Probab=97.27 E-value=0.00025 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
+|+++|.||+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888663
No 441
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.00026 Score=47.38 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998775
No 442
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.25 E-value=0.0012 Score=42.46 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=48.1
Q ss_pred EEEEC-CCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 10 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 10 i~vvG-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
|++.| ..|+||||+...+...-.. ...+... +..+.. +.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~------~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLL------IDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEE------EeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56666 5689999998665542111 1111111 111111 678899999864322 22567789999999886
Q ss_pred CChhhHHHHHHHHHH
Q 029177 89 ISKASYENISKKWIP 103 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~ 103 (197)
+ ..++... ..+++
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 4 4455555 45544
No 443
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.25 E-value=0.00028 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 444
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.25 E-value=0.0003 Score=50.52 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999664
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00026 Score=52.35 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 029177 10 CVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~ 29 (197)
|+++|++|+|||||++-+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988866
No 446
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.24 E-value=0.00027 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 447
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.24 E-value=0.00037 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
+|+++|++|+||||+...+...
T Consensus 6 ~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 7999999999999999988753
No 448
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.24 E-value=0.035 Score=39.02 Aligned_cols=141 Identities=9% Similarity=0.074 Sum_probs=90.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
......|++||..+.++..|...+....-. +...+..-.. .. .|. + ....=...|.++
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~s-LP-----Lp~--e----~~~lRprIDlIV 69 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAKS-LP-----LPS--E----NNNLRPRIDLIV 69 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEecc-CC-----Ccc--c----ccCCCceeEEEE
Confidence 344678999999999999999999863210 1111211110 11 011 1 111123579999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|++|....-|+... +.=+..+...+--=.+.++++-....+.-. +...++..++..|.. |++.+.-.+
T Consensus 70 Fvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~le~ 137 (176)
T PF11111_consen 70 FVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADLEN 137 (176)
T ss_pred EEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeeccc
Confidence 99999999999888 444444443332224566666666554333 788999999999998 888888777
Q ss_pred CCCHHHHHHHHHHHH
Q 029177 164 QQNVKTVFDAAIKVV 178 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~ 178 (197)
.++...+-+.+.+.+
T Consensus 138 ~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 138 EEGRTSLAQRLLRML 152 (176)
T ss_pred chHHHHHHHHHHHHH
Confidence 777666666555543
No 449
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.00033 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF 32 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~ 32 (197)
.++++|++|+||||++..+.....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC
Confidence 689999999999999999987644
No 450
>PRK08233 hypothetical protein; Provisional
Probab=97.22 E-value=0.00036 Score=49.62 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=20.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999999764
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.22 E-value=0.0003 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.|+|+|+.|+|||||++.|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888764
No 452
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.21 E-value=0.0038 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
.++.|--|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567899999999999999864
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0027 Score=54.72 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++++|+.||||||.+..|..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999977764
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.20 E-value=0.00029 Score=46.99 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888765
No 455
>PRK13949 shikimate kinase; Provisional
Probab=97.19 E-value=0.00036 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+|+|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987765
No 456
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00034 Score=51.41 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-|++||++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999988876
No 457
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.17 E-value=0.00037 Score=45.13 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029177 9 KCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~ 28 (197)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999998875
No 458
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.17 E-value=0.00035 Score=49.98 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|+++|++||||||+++++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 459
>PRK14532 adenylate kinase; Provisional
Probab=97.15 E-value=0.00038 Score=49.96 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 460
>PHA00729 NTP-binding motif containing protein
Probab=97.15 E-value=0.00046 Score=50.77 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
+....+|++.|+||+|||+|..++...
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999888764
No 461
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.14 E-value=0.00038 Score=50.43 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|+|.|++|||||||++.|.+-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988664
No 462
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.12 E-value=0.00043 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.|+++|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999873
No 463
>PRK14531 adenylate kinase; Provisional
Probab=97.09 E-value=0.00052 Score=49.14 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+|+++|+|||||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999988865
No 464
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.09 E-value=0.0004 Score=49.95 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 465
>PRK00625 shikimate kinase; Provisional
Probab=97.08 E-value=0.00049 Score=48.80 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988865
No 466
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.07 E-value=0.00066 Score=48.19 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=22.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
..+..-|++.|.+|+||||+.+.+...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345578999999999999999887653
No 467
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.07 E-value=0.00057 Score=48.60 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029177 9 KCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~ 28 (197)
.++++|+.|+|||||++.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999875
No 468
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.07 E-value=0.00049 Score=49.07 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 029177 10 CVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~ 29 (197)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998876
No 469
>PLN02200 adenylate kinase family protein
Probab=97.06 E-value=0.00069 Score=50.45 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=21.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.++.|+|+|+|||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988875
No 470
>PRK02496 adk adenylate kinase; Provisional
Probab=97.06 E-value=0.0006 Score=48.77 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
.|++|+|+||+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988865
No 471
>PRK06547 hypothetical protein; Provisional
Probab=97.05 E-value=0.00069 Score=48.02 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
......|+|.|.+||||||+.+.|...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998764
No 472
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.05 E-value=0.00053 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999887753
No 473
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.04 E-value=0.0006 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
+++|+|++|+|||||+|-+-+=
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 6899999999999999987653
No 474
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.03 E-value=0.00049 Score=50.39 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 475
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.02 E-value=0.00063 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999887753
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.01 E-value=0.00068 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.++++|++|+||||+++.+.+-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998764
No 477
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.01 E-value=0.0045 Score=43.97 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=57.9
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN 132 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 132 (197)
..+.+.++|+|+.... .....+..+|.+++++..+.. +.... ..+.+.+... +.|+.+|.|+.|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~------- 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDL-ERAVELVRHF--GIPVGVVINKYDLND------- 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCc-------
Confidence 3478889999976432 223456789999999988743 55555 5566666654 578889999998753
Q ss_pred CCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 133 HPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
-..+++.++.++++. +++
T Consensus 158 ------~~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 158 ------EIAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred ------chHHHHHHHHHHcCC-CeE
Confidence 223556777777776 444
No 478
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.00 E-value=0.00058 Score=50.40 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|++.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 678999999999999888763
No 479
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0011 Score=48.45 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=24.9
Q ss_pred CCCC-cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 1 MMNT-ARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 1 ~~~~-~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
||.. .+.+=|+|-|.+||||||+.+.+...
T Consensus 1 m~~~~~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 1 MMKKPEKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CCCCCCceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 5544 56788999999999999999988764
No 480
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00067 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+|.|.||+||||+..+|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 799999999999999999874
No 481
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.97 E-value=0.0006 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=16.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.-.++|.|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998765
No 482
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.97 E-value=0.00076 Score=49.57 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5899999999999999998875
No 483
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.96 E-value=0.00093 Score=49.60 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=22.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+.+-|++.|++|+|||||++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999988764
No 484
>PRK14527 adenylate kinase; Provisional
Probab=96.96 E-value=0.00091 Score=48.18 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.--|+++|+||+||||+...+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999988864
No 485
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.94 E-value=0.00083 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998874
No 486
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.94 E-value=0.00077 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 487
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.94 E-value=0.00067 Score=45.44 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-+++.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 488
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.94 E-value=0.00084 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998875
No 489
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.00072 Score=52.71 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 029177 10 CVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~ 29 (197)
++++|++|+|||||++.+-+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988876
No 490
>PRK04195 replication factor C large subunit; Provisional
Probab=96.94 E-value=0.007 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+||||+++.+...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 491
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.94 E-value=0.00076 Score=50.61 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++++|+.|+|||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999998876
No 492
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.93 E-value=0.00077 Score=48.89 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 029177 10 CVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~ 31 (197)
|++.|++|+||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887653
No 493
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.00078 Score=49.27 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998764
No 494
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.92 E-value=0.00064 Score=47.57 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|+++|++|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999988764
No 495
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.92 E-value=0.00089 Score=48.73 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988774
No 496
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00079 Score=48.88 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029177 9 KCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~ 28 (197)
-.+++||+|+|||||++.|-
T Consensus 35 VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred eEEEECCCCcCHHHHHHHHH
Confidence 46899999999999997774
No 497
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.00089 Score=49.84 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 498
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.00066 Score=46.32 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
..-+|+|.|.||+|||||..++..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 345899999999999999999874
No 499
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.90 E-value=0.00096 Score=48.55 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 500
>PRK04040 adenylate kinase; Provisional
Probab=96.90 E-value=0.00095 Score=48.02 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
..|+|.|.||+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47999999999999999988664
Done!