Query 029177
Match_columns 197
No_of_seqs 133 out of 1624
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 14:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5E-43 1.7E-47 256.1 17.5 165 4-180 10-176 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 4.6E-38 1.6E-42 229.3 20.5 182 2-185 4-185 (212)
3 3reg_A RHO-like small GTPase; 100.0 1.5E-36 5E-41 218.5 22.2 173 3-183 19-191 (194)
4 2bov_A RAla, RAS-related prote 100.0 9.9E-37 3.4E-41 221.0 19.5 164 5-180 12-177 (206)
5 4dsu_A GTPase KRAS, isoform 2B 100.0 1.1E-36 3.9E-41 217.7 19.6 180 5-197 2-189 (189)
6 3t5g_A GTP-binding protein RHE 100.0 3.5E-36 1.2E-40 214.0 21.6 173 2-186 1-175 (181)
7 3oes_A GTPase rhebl1; small GT 100.0 1E-36 3.4E-41 220.7 18.3 180 3-197 20-201 (201)
8 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.7E-36 2E-40 213.6 21.7 182 4-185 2-185 (186)
9 3q3j_B RHO-related GTP-binding 100.0 5.5E-36 1.9E-40 218.9 19.8 181 5-185 25-208 (214)
10 3bwd_D RAC-like GTP-binding pr 100.0 1.3E-36 4.4E-41 216.3 15.8 179 2-180 3-181 (182)
11 2atx_A Small GTP binding prote 100.0 1.2E-35 4E-40 213.7 21.0 176 5-180 16-193 (194)
12 1m7b_A RND3/RHOE small GTP-bin 100.0 8.2E-36 2.8E-40 213.0 19.3 177 4-180 4-183 (184)
13 2q3h_A RAS homolog gene family 100.0 1.3E-35 4.5E-40 214.6 19.8 177 5-181 18-196 (201)
14 2gf0_A GTP-binding protein DI- 100.0 3.8E-36 1.3E-40 216.9 15.9 166 3-181 4-172 (199)
15 2fu5_C RAS-related protein RAB 100.0 3.8E-36 1.3E-40 214.2 15.4 168 4-183 5-174 (183)
16 3tw8_B RAS-related protein RAB 100.0 2.4E-35 8.4E-40 209.3 19.3 169 4-184 6-175 (181)
17 3c5c_A RAS-like protein 12; GD 100.0 3.2E-35 1.1E-39 210.6 19.6 165 3-180 17-186 (187)
18 2j1l_A RHO-related GTP-binding 100.0 3.6E-35 1.2E-39 214.6 19.6 177 6-182 33-211 (214)
19 4gzl_A RAS-related C3 botulinu 100.0 4E-35 1.4E-39 212.8 19.3 174 5-178 28-203 (204)
20 1c1y_A RAS-related protein RAP 100.0 7.4E-35 2.5E-39 204.3 19.3 163 6-179 2-166 (167)
21 2ew1_A RAS-related protein RAB 100.0 5E-35 1.7E-39 211.9 18.7 165 4-180 23-189 (201)
22 3ihw_A Centg3; RAS, centaurin, 100.0 7.8E-35 2.7E-39 208.1 19.4 164 4-182 17-182 (184)
23 1gwn_A RHO-related GTP-binding 100.0 4.7E-35 1.6E-39 212.6 18.4 176 5-180 26-204 (205)
24 2fv8_A H6, RHO-related GTP-bin 100.0 2.3E-34 7.7E-39 209.2 22.0 179 5-183 23-203 (207)
25 2gco_A H9, RHO-related GTP-bin 100.0 2.2E-34 7.5E-39 208.4 21.6 176 5-180 23-200 (201)
26 1z08_A RAS-related protein RAB 100.0 1.7E-34 5.8E-39 203.1 20.5 165 4-180 3-169 (170)
27 3kkq_A RAS-related protein M-R 100.0 9.2E-35 3.1E-39 207.1 18.7 163 5-179 16-181 (183)
28 1u8z_A RAS-related protein RAL 100.0 1.1E-34 3.9E-39 203.3 18.8 163 6-180 3-167 (168)
29 1r2q_A RAS-related protein RAB 100.0 2.5E-34 8.5E-39 202.0 20.4 164 4-179 3-168 (170)
30 2iwr_A Centaurin gamma 1; ANK 100.0 1.3E-34 4.3E-39 205.5 18.7 165 2-181 2-170 (178)
31 1z2a_A RAS-related protein RAB 100.0 1.8E-34 6E-39 202.5 19.2 165 4-180 2-167 (168)
32 2efe_B Small GTP-binding prote 100.0 3.2E-34 1.1E-38 203.8 20.7 166 5-182 10-177 (181)
33 2hup_A RAS-related protein RAB 100.0 5.9E-35 2E-39 211.5 17.1 166 5-181 27-194 (201)
34 2nzj_A GTP-binding protein REM 100.0 1E-34 3.5E-39 205.1 18.0 164 5-180 2-169 (175)
35 2bcg_Y Protein YP2, GTP-bindin 100.0 3.3E-34 1.1E-38 208.0 20.9 164 4-179 5-170 (206)
36 2fn4_A P23, RAS-related protei 100.0 1.6E-34 5.3E-39 205.1 18.8 167 4-182 6-174 (181)
37 3cpj_B GTP-binding protein YPT 100.0 4.2E-34 1.4E-38 210.1 21.7 168 5-184 11-180 (223)
38 1vg8_A RAS-related protein RAB 100.0 8.3E-35 2.8E-39 211.1 17.5 165 4-180 5-175 (207)
39 2hxs_A RAB-26, RAS-related pro 100.0 7.5E-35 2.6E-39 206.5 16.6 168 4-183 3-176 (178)
40 3tkl_A RAS-related protein RAB 100.0 3.6E-34 1.2E-38 206.0 19.8 168 5-184 14-183 (196)
41 2bme_A RAB4A, RAS-related prot 100.0 6.1E-34 2.1E-38 203.2 20.8 165 5-181 8-174 (186)
42 2gf9_A RAS-related protein RAB 100.0 1.5E-33 5E-38 202.0 22.7 164 5-180 20-185 (189)
43 1wms_A RAB-9, RAB9, RAS-relate 100.0 6.2E-34 2.1E-38 201.6 20.5 169 1-181 1-175 (177)
44 1z0j_A RAB-22, RAS-related pro 100.0 1E-33 3.4E-38 199.0 21.3 163 5-179 4-168 (170)
45 1z0f_A RAB14, member RAS oncog 100.0 4.8E-34 1.6E-38 202.3 19.7 164 5-180 13-178 (179)
46 2a5j_A RAS-related protein RAB 100.0 5.5E-34 1.9E-38 204.6 20.2 164 5-180 19-184 (191)
47 3q85_A GTP-binding protein REM 100.0 2.8E-34 9.6E-39 201.9 18.2 163 7-181 2-168 (169)
48 1ek0_A Protein (GTP-binding pr 100.0 6.7E-34 2.3E-38 199.8 19.9 165 6-179 2-168 (170)
49 3q72_A GTP-binding protein RAD 100.0 3.6E-34 1.2E-38 200.8 18.2 161 7-180 2-164 (166)
50 2y8e_A RAB-protein 6, GH09086P 100.0 4.1E-34 1.4E-38 202.6 18.4 165 4-180 11-177 (179)
51 2a9k_A RAS-related protein RAL 100.0 4.6E-34 1.6E-38 203.7 18.8 164 5-180 16-181 (187)
52 2g6b_A RAS-related protein RAB 100.0 2E-33 6.7E-38 199.5 21.8 165 5-181 8-175 (180)
53 2g3y_A GTP-binding protein GEM 100.0 4.7E-34 1.6E-38 208.0 18.8 165 5-181 35-204 (211)
54 2atv_A RERG, RAS-like estrogen 100.0 2.2E-34 7.4E-39 207.6 16.7 164 4-180 25-191 (196)
55 1kao_A RAP2A; GTP-binding prot 100.0 3.3E-34 1.1E-38 200.7 17.1 162 6-179 2-165 (167)
56 2oil_A CATX-8, RAS-related pro 100.0 8.4E-34 2.9E-38 203.9 19.1 164 5-180 23-188 (193)
57 3cbq_A GTP-binding protein REM 100.0 2.8E-34 9.5E-39 207.0 16.4 166 5-182 21-190 (195)
58 2fg5_A RAB-22B, RAS-related pr 100.0 1E-33 3.4E-38 203.5 19.0 165 5-181 21-187 (192)
59 2o52_A RAS-related protein RAB 100.0 2.2E-34 7.7E-39 208.2 15.5 164 5-180 23-188 (200)
60 1zbd_A Rabphilin-3A; G protein 100.0 2.4E-33 8.1E-38 203.0 20.8 164 5-180 6-171 (203)
61 2il1_A RAB12; G-protein, GDP, 100.0 3.8E-34 1.3E-38 205.7 16.4 165 5-180 24-190 (192)
62 1g16_A RAS-related protein SEC 100.0 7E-34 2.4E-38 199.8 17.3 163 6-181 2-166 (170)
63 3con_A GTPase NRAS; structural 100.0 2.5E-33 8.6E-38 200.8 20.4 164 5-181 19-184 (190)
64 1ky3_A GTP-binding protein YPT 100.0 6.6E-34 2.3E-38 202.1 17.0 168 3-180 4-178 (182)
65 2p5s_A RAS and EF-hand domain 100.0 7.8E-34 2.7E-38 205.1 17.3 171 4-180 25-197 (199)
66 2erx_A GTP-binding protein DI- 100.0 9.7E-34 3.3E-38 199.3 17.1 163 6-180 2-167 (172)
67 3bc1_A RAS-related protein RAB 100.0 1.6E-33 5.5E-38 202.0 17.6 164 5-180 9-185 (195)
68 3clv_A RAB5 protein, putative; 100.0 5.3E-33 1.8E-37 200.8 20.2 165 2-180 2-204 (208)
69 1x3s_A RAS-related protein RAB 100.0 7.1E-33 2.4E-37 199.0 20.5 164 6-182 14-180 (195)
70 1z06_A RAS-related protein RAB 100.0 2.4E-33 8.2E-38 200.9 17.9 163 5-179 18-187 (189)
71 3dz8_A RAS-related protein RAB 100.0 1.2E-34 4.2E-39 208.0 10.7 165 5-181 21-187 (191)
72 2ce2_X GTPase HRAS; signaling 100.0 6.7E-33 2.3E-37 193.7 19.0 162 6-180 2-165 (166)
73 2yc2_C IFT27, small RAB-relate 100.0 8.8E-34 3E-38 205.7 13.9 165 5-181 18-193 (208)
74 2cjw_A GTP-binding protein GEM 100.0 1.1E-32 3.7E-37 198.3 17.7 165 5-181 4-173 (192)
75 3t1o_A Gliding protein MGLA; G 100.0 9.8E-34 3.4E-38 203.7 11.7 165 3-181 10-193 (198)
76 2f7s_A C25KG, RAS-related prot 100.0 2.9E-33 1E-37 204.6 14.4 165 5-181 23-200 (217)
77 3cph_A RAS-related protein SEC 100.0 2.9E-32 9.9E-37 198.5 19.1 163 5-180 18-182 (213)
78 2wkq_A NPH1-1, RAS-related C3 100.0 6.2E-32 2.1E-36 209.1 21.0 176 6-181 154-331 (332)
79 4djt_A GTP-binding nuclear pro 100.0 6.3E-33 2.1E-37 203.0 14.3 170 3-184 7-179 (218)
80 4bas_A ADP-ribosylation factor 100.0 9.2E-32 3.1E-36 193.8 17.8 168 5-184 15-193 (199)
81 3gj0_A GTP-binding nuclear pro 100.0 7.7E-33 2.6E-37 203.0 11.8 166 5-184 13-179 (221)
82 3th5_A RAS-related C3 botulinu 100.0 5.4E-35 1.9E-39 211.9 0.0 174 5-178 28-203 (204)
83 3l0i_B RAS-related protein RAB 100.0 3.8E-34 1.3E-38 206.8 4.1 164 5-180 31-196 (199)
84 1f6b_A SAR1; gtpases, N-termin 100.0 2.7E-31 9.3E-36 191.8 16.9 157 5-178 23-197 (198)
85 1m2o_B GTP-binding protein SAR 100.0 9.7E-31 3.3E-35 187.7 18.5 155 6-177 22-189 (190)
86 1upt_A ARL1, ADP-ribosylation 100.0 8.8E-31 3E-35 184.2 17.5 164 5-181 5-170 (171)
87 1zj6_A ADP-ribosylation factor 100.0 7.3E-31 2.5E-35 187.7 16.9 163 5-185 14-183 (187)
88 1ksh_A ARF-like protein 2; sma 100.0 1.9E-30 6.6E-35 185.2 18.9 159 5-181 16-181 (186)
89 2h57_A ADP-ribosylation factor 100.0 1E-30 3.5E-35 187.3 17.4 159 5-179 19-186 (190)
90 1r8s_A ADP-ribosylation factor 100.0 8.4E-32 2.9E-36 188.3 11.5 154 8-179 1-161 (164)
91 1zd9_A ADP-ribosylation factor 100.0 1.9E-30 6.4E-35 185.8 17.8 160 5-180 20-185 (188)
92 3llu_A RAS-related GTP-binding 100.0 5.2E-31 1.8E-35 189.9 13.2 167 5-178 18-195 (196)
93 2b6h_A ADP-ribosylation factor 100.0 2.9E-31 9.8E-36 190.7 11.6 157 5-179 27-190 (192)
94 2x77_A ADP-ribosylation factor 100.0 7.9E-31 2.7E-35 187.7 13.4 158 5-180 20-184 (189)
95 2h17_A ADP-ribosylation factor 100.0 1.5E-30 5E-35 185.2 14.6 155 5-177 19-180 (181)
96 2f9l_A RAB11B, member RAS onco 100.0 2.1E-29 7.4E-34 181.8 20.8 164 5-180 3-168 (199)
97 2zej_A Dardarin, leucine-rich 100.0 2.4E-31 8.1E-36 189.9 10.0 166 7-183 2-181 (184)
98 1fzq_A ADP-ribosylation factor 100.0 2.4E-30 8.1E-35 184.3 14.7 158 5-180 14-178 (181)
99 1moz_A ARL1, ADP-ribosylation 100.0 5.2E-30 1.8E-34 182.3 15.6 158 5-179 16-179 (183)
100 2fh5_B SR-beta, signal recogni 100.0 1.9E-30 6.6E-35 189.2 13.3 175 1-177 1-213 (214)
101 1oix_A RAS-related protein RAB 100.0 8E-29 2.7E-33 177.8 21.2 162 5-178 27-190 (191)
102 2lkc_A Translation initiation 100.0 6E-29 2.1E-33 176.0 18.0 160 5-183 6-174 (178)
103 3c5h_A Glucocorticoid receptor 100.0 1.1E-29 3.8E-34 190.1 11.7 162 5-179 17-254 (255)
104 2wji_A Ferrous iron transport 100.0 8.5E-29 2.9E-33 173.7 14.5 153 6-178 2-163 (165)
105 3r7w_A Gtpase1, GTP-binding pr 100.0 1.2E-28 4.2E-33 189.0 14.7 167 6-180 2-181 (307)
106 3o47_A ADP-ribosylation factor 100.0 2.3E-28 7.9E-33 189.1 14.8 160 6-181 164-328 (329)
107 2qu8_A Putative nucleolar GTP- 100.0 7E-28 2.4E-32 177.4 15.9 166 5-182 27-207 (228)
108 3r7w_B Gtpase2, GTP-binding pr 100.0 1.9E-29 6.4E-34 192.6 7.5 163 9-181 1-175 (331)
109 3lvq_E ARF-GAP with SH3 domain 100.0 7.2E-27 2.5E-31 190.1 18.7 161 5-182 320-486 (497)
110 2dyk_A GTP-binding protein; GT 99.9 1.5E-27 5E-32 166.1 12.1 150 8-178 2-160 (161)
111 2wjg_A FEOB, ferrous iron tran 99.9 1.8E-27 6.1E-32 170.0 12.1 159 4-182 4-171 (188)
112 2gj8_A MNME, tRNA modification 99.9 7.8E-28 2.7E-32 169.9 9.4 153 6-180 3-166 (172)
113 1svi_A GTP-binding protein YSX 99.9 1.9E-27 6.5E-32 170.7 11.2 158 4-179 20-194 (195)
114 3dpu_A RAB family protein; roc 99.9 1.4E-27 4.7E-32 195.8 11.5 165 4-183 38-211 (535)
115 2cxx_A Probable GTP-binding pr 99.9 5.3E-28 1.8E-32 172.8 7.4 157 8-182 2-186 (190)
116 3a1s_A Iron(II) transport prot 99.9 1.4E-26 4.6E-31 173.5 14.5 155 5-179 3-166 (258)
117 3iev_A GTP-binding protein ERA 99.9 3.1E-26 1.1E-30 175.7 15.6 163 4-181 7-183 (308)
118 3pqc_A Probable GTP-binding pr 99.9 9.9E-27 3.4E-31 166.7 11.4 159 5-179 21-193 (195)
119 3b1v_A Ferrous iron uptake tra 99.9 3.6E-26 1.2E-30 172.2 11.0 153 6-179 2-163 (272)
120 1wf3_A GTP-binding protein; GT 99.9 2.4E-25 8.2E-30 170.0 15.6 161 1-179 1-172 (301)
121 3gee_A MNME, tRNA modification 99.9 3.7E-25 1.3E-29 178.1 14.8 155 7-179 233-397 (476)
122 3iby_A Ferrous iron transport 99.9 4.8E-26 1.6E-30 170.2 8.5 149 9-177 3-164 (256)
123 3k53_A Ferrous iron transport 99.9 3.3E-25 1.1E-29 167.2 13.0 157 6-181 2-167 (271)
124 4dhe_A Probable GTP-binding pr 99.9 1.1E-25 3.9E-30 164.8 10.0 165 5-183 27-214 (223)
125 3i8s_A Ferrous iron transport 99.9 4.3E-26 1.5E-30 172.3 7.6 156 6-181 2-170 (274)
126 2hjg_A GTP-binding protein ENG 99.9 2.6E-25 8.8E-30 178.1 9.7 158 6-179 174-348 (436)
127 4dcu_A GTP-binding protein ENG 99.9 4.2E-25 1.4E-29 177.8 9.8 159 5-179 193-368 (456)
128 1mky_A Probable GTP-binding pr 99.9 2.8E-24 9.7E-29 172.2 13.6 152 9-180 3-166 (439)
129 1nrj_B SR-beta, signal recogni 99.9 1.1E-25 3.7E-30 164.4 4.1 142 5-166 10-170 (218)
130 2e87_A Hypothetical protein PH 99.9 2.8E-23 9.7E-28 162.3 16.9 159 5-179 165-335 (357)
131 1xzp_A Probable tRNA modificat 99.9 3.1E-24 1.1E-28 172.9 11.4 151 7-179 243-404 (482)
132 3qq5_A Small GTP-binding prote 99.9 8.1E-25 2.8E-29 173.5 6.0 157 5-181 32-197 (423)
133 1ega_A Protein (GTP-binding pr 99.9 1.1E-22 3.9E-27 155.4 16.3 158 5-179 6-174 (301)
134 3geh_A MNME, tRNA modification 99.9 2.8E-23 9.5E-28 166.7 12.8 153 7-182 224-386 (462)
135 3sjy_A Translation initiation 99.9 1.7E-22 5.9E-27 160.2 17.0 169 4-182 5-194 (403)
136 1lnz_A SPO0B-associated GTP-bi 99.9 1.3E-23 4.3E-28 162.8 9.3 159 9-183 160-333 (342)
137 1cip_A Protein (guanine nucleo 99.9 8E-23 2.7E-27 158.8 13.2 125 55-180 193-344 (353)
138 2xtp_A GTPase IMAP family memb 99.9 1.2E-22 3.9E-27 152.4 13.0 162 6-180 21-208 (260)
139 1mky_A Probable GTP-binding pr 99.9 3.1E-22 1.1E-26 160.4 16.0 158 6-179 179-354 (439)
140 1wb1_A Translation elongation 99.9 1.2E-22 4.3E-27 164.1 13.3 160 3-179 15-188 (482)
141 1s0u_A EIF-2-gamma, translatio 99.9 9.8E-22 3.4E-26 156.1 17.6 166 3-182 4-200 (408)
142 2ywe_A GTP-binding protein LEP 99.9 3.8E-22 1.3E-26 164.0 15.5 164 3-182 2-186 (600)
143 3izy_P Translation initiation 99.9 1.6E-24 5.5E-29 175.9 1.2 161 6-180 3-168 (537)
144 2xtz_A Guanine nucleotide-bind 99.9 7.2E-23 2.5E-27 159.0 10.3 126 53-179 181-344 (354)
145 3cb4_D GTP-binding protein LEP 99.9 1.8E-22 6.3E-27 166.1 12.1 161 6-182 3-184 (599)
146 2hjg_A GTP-binding protein ENG 99.9 5.8E-24 2E-28 170.3 3.2 152 8-180 4-165 (436)
147 3ohm_A Guanine nucleotide-bind 99.9 8.5E-22 2.9E-26 151.1 14.3 131 48-182 162-320 (327)
148 3lxx_A GTPase IMAP family memb 99.9 6.9E-22 2.4E-26 146.4 12.9 167 5-179 27-213 (239)
149 3tr5_A RF-3, peptide chain rel 99.9 1.7E-21 6E-26 158.6 14.8 115 6-126 12-149 (528)
150 2c78_A Elongation factor TU-A; 99.9 4.6E-22 1.6E-26 157.9 11.0 165 4-181 8-213 (405)
151 3j2k_7 ERF3, eukaryotic polype 99.9 2.7E-21 9.1E-26 154.8 15.0 159 5-172 15-217 (439)
152 1jny_A EF-1-alpha, elongation 99.9 1.4E-22 4.8E-27 162.1 7.0 162 2-171 1-204 (435)
153 2ged_A SR-beta, signal recogni 99.9 4E-22 1.4E-26 142.7 7.9 113 5-126 46-171 (193)
154 3t5d_A Septin-7; GTP-binding p 99.9 3.7E-22 1.3E-26 150.7 8.1 163 3-178 4-202 (274)
155 1g7s_A Translation initiation 99.9 2.8E-21 9.5E-26 159.2 13.9 168 5-179 3-217 (594)
156 2qtf_A Protein HFLX, GTP-bindi 99.9 7.5E-21 2.6E-25 148.5 15.3 162 8-182 179-356 (364)
157 1kk1_A EIF2gamma; initiation o 99.9 6.7E-21 2.3E-25 151.4 15.1 165 4-182 7-202 (410)
158 1d2e_A Elongation factor TU (E 99.9 1.1E-21 3.9E-26 155.2 10.5 163 6-181 2-196 (397)
159 3p26_A Elongation factor 1 alp 99.9 9E-22 3.1E-26 159.4 9.3 152 5-169 31-227 (483)
160 4dcu_A GTP-binding protein ENG 99.9 1.4E-22 4.7E-27 163.2 3.9 154 6-180 22-185 (456)
161 2qag_A Septin-2, protein NEDD5 99.9 2E-22 6.9E-27 157.5 4.5 160 6-180 36-233 (361)
162 3lxw_A GTPase IMAP family memb 99.9 4.9E-21 1.7E-25 142.5 11.7 166 5-180 19-208 (247)
163 4fid_A G protein alpha subunit 99.9 8E-21 2.7E-25 146.2 12.9 127 54-180 160-328 (340)
164 1zun_B Sulfate adenylate trans 99.8 1.2E-20 4.2E-25 150.9 13.7 156 5-170 22-214 (434)
165 1f60_A Elongation factor EEF1A 99.8 5.2E-21 1.8E-25 153.9 11.6 158 1-170 1-202 (458)
166 1zo1_I IF2, translation initia 99.8 5E-23 1.7E-27 166.0 -0.1 158 5-177 2-164 (501)
167 2elf_A Protein translation elo 99.8 5.3E-21 1.8E-25 149.7 10.3 147 9-180 23-180 (370)
168 3izq_1 HBS1P, elongation facto 99.8 1.4E-20 4.7E-25 155.8 13.1 157 5-170 165-362 (611)
169 3avx_A Elongation factor TS, e 99.8 1.2E-20 4.1E-25 162.6 10.7 166 5-181 294-487 (1289)
170 1r5b_A Eukaryotic peptide chai 99.8 3.5E-21 1.2E-25 155.2 6.0 159 5-171 41-243 (467)
171 1pui_A ENGB, probable GTP-bind 99.8 5.5E-20 1.9E-24 133.3 11.7 164 5-183 24-202 (210)
172 2aka_B Dynamin-1; fusion prote 99.8 5.8E-21 2E-25 145.7 5.9 159 6-177 25-250 (299)
173 3def_A T7I23.11 protein; chlor 99.8 8.4E-20 2.9E-24 137.0 11.4 118 5-125 34-165 (262)
174 2h5e_A Peptide chain release f 99.8 2.8E-19 9.6E-24 145.7 14.3 116 5-126 11-149 (529)
175 3mca_A HBS1, elongation factor 99.8 8.5E-21 2.9E-25 156.6 4.3 159 5-178 175-395 (592)
176 2dy1_A Elongation factor G; tr 99.8 2.7E-19 9.4E-24 149.6 12.0 116 5-124 7-139 (665)
177 1dar_A EF-G, elongation factor 99.8 1.2E-18 4.2E-23 146.2 15.6 116 5-126 10-144 (691)
178 1u0l_A Probable GTPase ENGC; p 99.8 4.9E-20 1.7E-24 140.8 6.2 135 22-176 32-169 (301)
179 2j69_A Bacterial dynamin-like 99.8 5.3E-19 1.8E-23 148.5 11.2 170 6-180 68-325 (695)
180 1h65_A Chloroplast outer envel 99.8 1.4E-18 4.8E-23 130.8 12.0 119 6-127 38-170 (270)
181 2qnr_A Septin-2, protein NEDD5 99.8 7.5E-20 2.6E-24 139.7 4.8 162 6-181 17-215 (301)
182 2xex_A Elongation factor G; GT 99.8 4.6E-18 1.6E-22 142.8 15.9 117 4-126 7-142 (693)
183 2rdo_7 EF-G, elongation factor 99.8 8.6E-18 2.9E-22 141.3 16.8 119 4-126 7-149 (704)
184 1zcb_A G alpha I/13; GTP-bindi 99.8 4.3E-18 1.5E-22 132.7 13.5 130 47-180 195-353 (362)
185 1udx_A The GTP-binding protein 99.8 4.2E-18 1.5E-22 134.7 13.3 159 9-183 159-328 (416)
186 2qag_C Septin-7; cell cycle, c 99.8 2.7E-18 9.1E-23 136.0 10.8 158 7-178 31-225 (418)
187 1jwy_B Dynamin A GTPase domain 99.8 3.4E-19 1.2E-23 136.9 4.8 113 55-181 131-263 (315)
188 1azs_C GS-alpha; complex (lyas 99.8 1.8E-17 6.3E-22 130.2 14.2 131 47-180 211-385 (402)
189 3t34_A Dynamin-related protein 99.7 4.9E-19 1.7E-23 138.5 3.8 152 8-173 35-254 (360)
190 1wxq_A GTP-binding protein; st 99.7 1.7E-17 6E-22 130.9 11.4 84 8-91 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 2.9E-17 9.7E-22 119.9 10.6 155 6-181 29-215 (221)
192 1jal_A YCHF protein; nucleotid 99.7 4.4E-16 1.5E-20 120.9 14.3 83 8-90 3-108 (363)
193 3vqt_A RF-3, peptide chain rel 99.7 1.9E-16 6.4E-21 129.7 12.8 115 6-126 30-167 (548)
194 2hf9_A Probable hydrogenase ni 99.7 4E-18 1.4E-22 124.8 2.4 153 6-179 37-223 (226)
195 1n0u_A EF-2, elongation factor 99.7 5.7E-17 2E-21 138.7 8.0 119 3-125 15-164 (842)
196 2x2e_A Dynamin-1; nitration, h 99.7 4.8E-18 1.6E-22 132.5 1.0 158 6-176 30-254 (353)
197 3p32_A Probable GTPase RV1496/ 99.7 8.7E-17 3E-21 125.5 7.1 103 55-179 172-283 (355)
198 2qpt_A EH domain-containing pr 99.6 2.3E-16 7.8E-21 129.3 6.7 118 6-126 64-233 (550)
199 2dby_A GTP-binding protein; GD 99.6 9.3E-15 3.2E-19 114.0 13.2 83 8-90 2-111 (368)
200 2www_A Methylmalonic aciduria 99.6 2.7E-16 9.4E-21 122.3 3.9 102 55-178 167-277 (349)
201 1yrb_A ATP(GTP)binding protein 99.6 1.4E-15 4.9E-20 113.7 6.7 120 55-178 109-255 (262)
202 2p67_A LAO/AO transport system 99.6 1.8E-15 6.2E-20 117.4 6.4 104 55-179 149-260 (341)
203 3j25_A Tetracycline resistance 99.6 8.9E-16 3E-20 127.9 3.9 171 8-182 3-241 (638)
204 4a9a_A Ribosome-interacting GT 99.6 7.5E-14 2.6E-18 108.9 14.0 142 7-152 72-221 (376)
205 4fn5_A EF-G 1, elongation fact 99.5 1.9E-13 6.6E-18 115.3 16.1 116 6-125 12-151 (709)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 1.7E-14 5.7E-19 121.2 7.7 157 7-177 51-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.5 1.4E-13 4.9E-18 104.9 10.9 98 65-176 66-165 (302)
208 3l82_B F-box only protein 4; T 99.4 1.4E-13 4.8E-18 98.0 5.2 106 62-180 109-223 (227)
209 2qm8_A GTPase/ATPase; G protei 99.4 2.8E-13 9.5E-18 104.9 6.1 103 55-178 148-259 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 1E-12 3.4E-17 103.1 4.7 88 6-93 21-131 (396)
211 3l2o_B F-box only protein 4; s 99.3 4.1E-12 1.4E-16 94.7 6.5 106 62-180 194-308 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.6E-10 5.4E-15 90.7 14.3 85 6-90 19-127 (392)
213 3h2y_A GTPase family protein; 99.0 3.3E-10 1.1E-14 88.6 6.6 98 64-178 55-158 (368)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 1E-09 3.5E-14 85.9 4.9 98 64-178 57-160 (369)
215 3ec1_A YQEH GTPase; atnos1, at 98.9 8.9E-11 3E-15 91.9 -1.3 138 8-166 163-317 (369)
216 2qag_B Septin-6, protein NEDD5 98.9 4.5E-08 1.5E-12 77.5 13.9 116 6-126 41-191 (427)
217 2j37_W Signal recognition part 98.9 1.6E-09 5.4E-14 87.7 4.7 152 5-177 99-310 (504)
218 3sop_A Neuronal-specific septi 98.9 2.6E-08 9E-13 74.6 11.0 115 7-126 2-155 (270)
219 3h2y_A GTPase family protein; 98.8 1.6E-10 5.5E-15 90.4 -2.6 111 8-127 161-289 (368)
220 1tq4_A IIGP1, interferon-induc 98.8 1.2E-07 4.2E-12 74.9 12.1 166 7-180 69-253 (413)
221 1puj_A YLQF, conserved hypothe 98.7 1.1E-08 3.8E-13 77.1 5.5 101 59-179 3-105 (282)
222 1puj_A YLQF, conserved hypothe 98.6 4E-08 1.4E-12 74.0 5.4 57 6-67 119-177 (282)
223 3cnl_A YLQF, putative uncharac 98.6 2.3E-08 7.9E-13 74.6 3.4 56 8-67 100-156 (262)
224 1f5n_A Interferon-induced guan 98.4 2.1E-07 7.2E-12 76.6 5.7 64 5-68 36-104 (592)
225 3dm5_A SRP54, signal recogniti 98.4 5.3E-07 1.8E-11 71.7 7.0 139 6-167 99-278 (443)
226 2v3c_C SRP54, signal recogniti 98.3 5E-07 1.7E-11 72.0 4.9 64 55-125 181-252 (432)
227 3cnl_A YLQF, putative uncharac 98.2 2.8E-07 9.5E-12 68.7 1.8 94 62-177 4-98 (262)
228 1t9h_A YLOQ, probable GTPase E 98.2 1.7E-06 5.9E-11 65.8 4.9 91 70-173 78-170 (307)
229 3kl4_A SRP54, signal recogniti 98.1 5.5E-06 1.9E-10 65.8 6.5 90 55-167 180-277 (433)
230 1bif_A 6-phosphofructo-2-kinas 98.0 7.7E-08 2.6E-12 77.6 -5.1 112 6-122 38-160 (469)
231 1j8m_F SRP54, signal recogniti 98.0 2.3E-06 8E-11 64.9 2.2 91 55-169 181-280 (297)
232 3szr_A Interferon-induced GTP- 98.0 4.8E-06 1.7E-10 69.2 4.1 23 9-31 47-69 (608)
233 2rcn_A Probable GTPase ENGC; Y 97.8 0.00014 4.7E-09 56.4 9.8 84 75-174 127-213 (358)
234 3q5d_A Atlastin-1; G protein, 97.8 3.6E-05 1.2E-09 61.4 5.9 25 5-29 65-89 (447)
235 1zp6_A Hypothetical protein AT 97.6 3.3E-05 1.1E-09 54.3 3.3 26 5-30 7-32 (191)
236 4eun_A Thermoresistant glucoki 97.6 3.2E-05 1.1E-09 55.0 3.3 29 1-29 23-51 (200)
237 1ye8_A Protein THEP1, hypothet 97.6 4.2E-05 1.4E-09 53.5 3.4 22 9-30 2-23 (178)
238 1kgd_A CASK, peripheral plasma 97.6 4.1E-05 1.4E-09 53.5 3.1 22 9-30 7-28 (180)
239 1t9h_A YLOQ, probable GTPase E 97.5 3.1E-05 1.1E-09 58.8 2.4 22 9-30 175-196 (307)
240 1lvg_A Guanylate kinase, GMP k 97.5 5.2E-05 1.8E-09 53.9 3.1 21 9-29 6-26 (198)
241 3asz_A Uridine kinase; cytidin 97.5 5.4E-05 1.9E-09 54.1 3.2 27 3-29 2-28 (211)
242 1cke_A CK, MSSA, protein (cyti 97.5 6.4E-05 2.2E-09 54.3 3.4 27 1-29 1-27 (227)
243 2yv5_A YJEQ protein; hydrolase 97.4 0.00022 7.4E-09 54.1 5.8 20 9-28 167-186 (302)
244 3a00_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 52.3 3.0 20 10-29 4-23 (186)
245 3tr0_A Guanylate kinase, GMP k 97.4 8.5E-05 2.9E-09 52.7 3.1 22 9-30 9-30 (205)
246 3tau_A Guanylate kinase, GMP k 97.4 0.00012 4.2E-09 52.3 3.9 22 9-30 10-31 (208)
247 4gp7_A Metallophosphoesterase; 97.4 8.3E-05 2.8E-09 51.5 2.8 20 9-28 11-30 (171)
248 1zd8_A GTP:AMP phosphotransfer 97.4 8.5E-05 2.9E-09 53.8 2.8 29 1-29 1-29 (227)
249 1ex7_A Guanylate kinase; subst 97.4 0.0001 3.5E-09 51.9 3.1 21 10-30 4-24 (186)
250 3ney_A 55 kDa erythrocyte memb 97.4 0.00012 4.3E-09 51.9 3.5 23 8-30 20-42 (197)
251 1s96_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 53.3 3.1 22 9-30 18-39 (219)
252 2j41_A Guanylate kinase; GMP, 97.4 0.00012 4.1E-09 52.0 3.3 24 8-31 7-30 (207)
253 1znw_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 52.5 3.1 22 9-30 22-43 (207)
254 1z6g_A Guanylate kinase; struc 97.3 0.00011 3.8E-09 53.0 3.1 22 9-30 25-46 (218)
255 2plr_A DTMP kinase, probable t 97.3 0.00018 6.3E-09 51.1 3.9 22 8-29 5-26 (213)
256 1qf9_A UMP/CMP kinase, protein 97.3 0.00018 6E-09 50.4 3.7 28 2-29 1-28 (194)
257 1qhx_A CPT, protein (chloramph 97.3 0.0002 6.9E-09 49.6 3.9 22 9-30 5-26 (178)
258 1y63_A LMAJ004144AAA protein; 97.3 0.00018 6.2E-09 50.4 3.5 26 5-30 8-33 (184)
259 3c8u_A Fructokinase; YP_612366 97.3 0.00013 4.6E-09 52.1 2.8 24 6-29 21-44 (208)
260 2qor_A Guanylate kinase; phosp 97.3 0.00015 5.3E-09 51.6 3.1 23 8-30 13-35 (204)
261 1kag_A SKI, shikimate kinase I 97.2 0.00018 6.1E-09 49.6 3.1 22 9-30 6-27 (173)
262 3lw7_A Adenylate kinase relate 97.2 0.00018 6.2E-09 49.4 3.1 19 9-27 3-21 (179)
263 3kb2_A SPBC2 prophage-derived 97.2 0.00018 6.2E-09 49.4 3.0 21 9-29 3-23 (173)
264 1ly1_A Polynucleotide kinase; 97.2 0.00023 8E-09 49.2 3.6 22 8-29 3-24 (181)
265 1knq_A Gluconate kinase; ALFA/ 97.2 0.00029 9.8E-09 48.7 3.9 23 7-29 8-30 (175)
266 3tif_A Uncharacterized ABC tra 97.2 0.0002 6.8E-09 52.3 3.1 22 9-30 33-54 (235)
267 1nn5_A Similar to deoxythymidy 97.2 0.00019 6.6E-09 51.2 2.9 24 6-29 8-31 (215)
268 2bdt_A BH3686; alpha-beta prot 97.2 0.00021 7.1E-09 50.1 3.1 21 9-29 4-24 (189)
269 1htw_A HI0065; nucleotide-bind 97.2 0.00023 7.7E-09 48.8 3.1 23 9-31 35-57 (158)
270 3fb4_A Adenylate kinase; psych 97.2 0.00022 7.5E-09 51.1 3.2 21 9-29 2-22 (216)
271 2rcn_A Probable GTPase ENGC; Y 97.2 0.00022 7.6E-09 55.3 3.2 23 9-31 217-239 (358)
272 3dl0_A Adenylate kinase; phosp 97.2 0.00023 8E-09 51.0 3.2 21 9-29 2-22 (216)
273 1jjv_A Dephospho-COA kinase; P 97.2 0.00033 1.1E-08 49.8 3.9 22 8-29 3-24 (206)
274 2bbw_A Adenylate kinase 4, AK4 97.2 0.00027 9.1E-09 51.9 3.4 22 7-28 27-48 (246)
275 3tlx_A Adenylate kinase 2; str 97.1 0.00034 1.2E-08 51.3 3.8 24 6-29 28-51 (243)
276 3t61_A Gluconokinase; PSI-biol 97.1 0.00028 9.4E-09 50.1 3.0 22 8-29 19-40 (202)
277 1tev_A UMP-CMP kinase; ploop, 97.1 0.00035 1.2E-08 48.9 3.6 23 7-29 3-25 (196)
278 2onk_A Molybdate/tungstate ABC 97.1 0.0003 1E-08 51.6 3.2 22 9-30 26-47 (240)
279 2pcj_A ABC transporter, lipopr 97.1 0.00025 8.5E-09 51.4 2.8 22 9-30 32-53 (224)
280 3vaa_A Shikimate kinase, SK; s 97.1 0.00033 1.1E-08 49.6 3.3 22 8-29 26-47 (199)
281 3cm0_A Adenylate kinase; ATP-b 97.1 0.00041 1.4E-08 48.4 3.8 23 7-29 4-26 (186)
282 2i3b_A HCR-ntpase, human cance 97.1 0.00027 9.3E-09 49.8 2.8 21 9-29 3-23 (189)
283 3sr0_A Adenylate kinase; phosp 97.1 0.00032 1.1E-08 50.2 3.2 22 8-29 1-22 (206)
284 1via_A Shikimate kinase; struc 97.1 0.00029 1E-08 48.7 2.9 21 9-29 6-26 (175)
285 3gfo_A Cobalt import ATP-bindi 97.1 0.00031 1.1E-08 52.5 3.1 22 9-30 36-57 (275)
286 2cdn_A Adenylate kinase; phosp 97.1 0.0004 1.4E-08 49.2 3.6 25 5-29 18-42 (201)
287 1sgw_A Putative ABC transporte 97.1 0.00033 1.1E-08 50.4 3.1 22 9-30 37-58 (214)
288 1kht_A Adenylate kinase; phosp 97.1 0.00034 1.2E-08 48.9 3.2 22 8-29 4-25 (192)
289 1ukz_A Uridylate kinase; trans 97.1 0.00048 1.6E-08 48.8 4.0 25 5-29 13-37 (203)
290 1b0u_A Histidine permease; ABC 97.1 0.00032 1.1E-08 52.1 3.1 22 9-30 34-55 (262)
291 1np6_A Molybdopterin-guanine d 97.1 0.00035 1.2E-08 48.6 3.1 22 9-30 8-29 (174)
292 2jaq_A Deoxyguanosine kinase; 97.1 0.00038 1.3E-08 49.2 3.3 21 9-29 2-22 (205)
293 2cbz_A Multidrug resistance-as 97.1 0.00037 1.3E-08 51.0 3.3 22 9-30 33-54 (237)
294 2rhm_A Putative kinase; P-loop 97.0 0.00043 1.5E-08 48.5 3.5 23 7-29 5-27 (193)
295 2v54_A DTMP kinase, thymidylat 97.0 0.00043 1.5E-08 49.0 3.6 23 8-30 5-27 (204)
296 4g1u_C Hemin import ATP-bindin 97.0 0.00034 1.2E-08 52.1 3.1 22 9-30 39-60 (266)
297 1g6h_A High-affinity branched- 97.0 0.00035 1.2E-08 51.8 3.1 22 9-30 35-56 (257)
298 1nks_A Adenylate kinase; therm 97.0 0.00034 1.2E-08 48.9 3.0 21 9-29 3-23 (194)
299 2ff7_A Alpha-hemolysin translo 97.0 0.00039 1.3E-08 51.2 3.3 22 9-30 37-58 (247)
300 1mv5_A LMRA, multidrug resista 97.0 0.0004 1.4E-08 51.0 3.4 22 9-30 30-51 (243)
301 2if2_A Dephospho-COA kinase; a 97.0 0.00033 1.1E-08 49.7 2.9 21 9-29 3-23 (204)
302 2v9p_A Replication protein E1; 97.0 0.00038 1.3E-08 52.8 3.2 21 9-29 128-148 (305)
303 2eyu_A Twitching motility prot 97.0 0.00036 1.2E-08 51.8 3.0 21 9-29 27-47 (261)
304 3uie_A Adenylyl-sulfate kinase 97.0 0.00039 1.3E-08 49.3 3.1 23 7-29 25-47 (200)
305 2olj_A Amino acid ABC transpor 97.0 0.00039 1.3E-08 51.7 3.1 22 9-30 52-73 (263)
306 3ec2_A DNA replication protein 97.0 0.00036 1.2E-08 48.5 2.8 23 8-30 39-61 (180)
307 2pze_A Cystic fibrosis transme 97.0 0.00045 1.5E-08 50.2 3.4 22 9-30 36-57 (229)
308 3trf_A Shikimate kinase, SK; a 97.0 0.00045 1.5E-08 48.1 3.3 22 8-29 6-27 (185)
309 1u0l_A Probable GTPase ENGC; p 97.0 0.00036 1.2E-08 52.8 3.0 23 9-31 171-193 (301)
310 1ji0_A ABC transporter; ATP bi 97.0 0.00041 1.4E-08 50.8 3.1 22 9-30 34-55 (240)
311 1aky_A Adenylate kinase; ATP:A 97.0 0.00045 1.5E-08 49.7 3.3 23 7-29 4-26 (220)
312 1e4v_A Adenylate kinase; trans 97.0 0.00037 1.3E-08 49.9 2.8 21 9-29 2-22 (214)
313 1vpl_A ABC transporter, ATP-bi 97.0 0.00042 1.4E-08 51.3 3.1 22 9-30 43-64 (256)
314 2qi9_C Vitamin B12 import ATP- 97.0 0.00043 1.5E-08 51.0 3.1 22 9-30 28-49 (249)
315 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00044 1.5E-08 51.0 3.2 22 9-30 31-52 (250)
316 2ehv_A Hypothetical protein PH 97.0 0.00044 1.5E-08 50.4 3.2 20 9-28 32-51 (251)
317 3iij_A Coilin-interacting nucl 97.0 0.00046 1.6E-08 47.9 3.1 23 7-29 11-33 (180)
318 3lnc_A Guanylate kinase, GMP k 97.0 0.00025 8.6E-09 51.4 1.8 22 9-30 29-51 (231)
319 1uj2_A Uridine-cytidine kinase 97.0 0.00053 1.8E-08 50.5 3.6 25 5-29 20-44 (252)
320 2ghi_A Transport protein; mult 97.0 0.00048 1.6E-08 51.1 3.3 22 9-30 48-69 (260)
321 3b85_A Phosphate starvation-in 97.0 0.00037 1.3E-08 49.9 2.5 22 9-30 24-45 (208)
322 2zu0_C Probable ATP-dependent 97.0 0.00048 1.6E-08 51.3 3.2 22 9-30 48-69 (267)
323 2ihy_A ABC transporter, ATP-bi 96.9 0.00053 1.8E-08 51.4 3.4 22 9-30 49-70 (279)
324 1gvn_B Zeta; postsegregational 96.9 0.00057 1.9E-08 51.4 3.6 24 6-29 32-55 (287)
325 2ixe_A Antigen peptide transpo 96.9 0.00052 1.8E-08 51.2 3.3 22 9-30 47-68 (271)
326 3tqc_A Pantothenate kinase; bi 96.9 0.00067 2.3E-08 51.8 4.0 25 5-29 90-114 (321)
327 1odf_A YGR205W, hypothetical 3 96.9 0.00069 2.3E-08 51.1 4.0 25 5-29 29-53 (290)
328 2nq2_C Hypothetical ABC transp 96.9 0.00049 1.7E-08 50.8 3.1 22 9-30 33-54 (253)
329 3aez_A Pantothenate kinase; tr 96.9 0.00071 2.4E-08 51.5 4.0 25 5-29 88-112 (312)
330 4a74_A DNA repair and recombin 96.9 0.00045 1.5E-08 49.8 2.7 22 9-30 27-48 (231)
331 2yz2_A Putative ABC transporte 96.9 0.00053 1.8E-08 51.0 3.1 22 9-30 35-56 (266)
332 2f1r_A Molybdopterin-guanine d 96.9 0.00024 8.3E-09 49.3 1.2 22 9-30 4-25 (171)
333 2pt5_A Shikimate kinase, SK; a 96.9 0.00061 2.1E-08 46.6 3.2 21 9-29 2-22 (168)
334 1uf9_A TT1252 protein; P-loop, 96.9 0.00064 2.2E-08 48.0 3.3 25 6-30 7-31 (203)
335 2jeo_A Uridine-cytidine kinase 96.9 0.00069 2.4E-08 49.6 3.6 23 7-29 25-47 (245)
336 1lw7_A Transcriptional regulat 96.9 0.00049 1.7E-08 53.6 2.9 23 8-30 171-193 (365)
337 2pjz_A Hypothetical protein ST 96.9 0.00066 2.3E-08 50.4 3.4 23 9-31 32-54 (263)
338 2xb4_A Adenylate kinase; ATP-b 96.9 0.00064 2.2E-08 49.1 3.2 21 9-29 2-22 (223)
339 2qt1_A Nicotinamide riboside k 96.9 0.00079 2.7E-08 47.8 3.7 25 6-30 20-44 (207)
340 2wwf_A Thymidilate kinase, put 96.9 0.00066 2.3E-08 48.3 3.2 23 7-29 10-32 (212)
341 2vli_A Antibiotic resistance p 96.8 0.00045 1.5E-08 48.0 2.1 23 7-29 5-27 (183)
342 2c95_A Adenylate kinase 1; tra 96.8 0.00065 2.2E-08 47.7 2.9 22 8-29 10-31 (196)
343 1xjc_A MOBB protein homolog; s 96.8 0.00077 2.6E-08 46.6 3.1 22 8-29 5-26 (169)
344 1zak_A Adenylate kinase; ATP:A 96.8 0.0005 1.7E-08 49.5 2.3 23 7-29 5-27 (222)
345 2yvu_A Probable adenylyl-sulfa 96.8 0.0012 4E-08 46.1 4.1 24 6-29 12-35 (186)
346 3nh6_A ATP-binding cassette SU 96.8 0.00049 1.7E-08 52.2 2.3 22 9-30 82-103 (306)
347 2bwj_A Adenylate kinase 5; pho 96.8 0.00022 7.6E-09 50.2 0.3 23 7-29 12-34 (199)
348 2z0h_A DTMP kinase, thymidylat 96.8 0.00075 2.6E-08 47.4 3.1 22 9-30 2-23 (197)
349 3be4_A Adenylate kinase; malar 96.8 0.00075 2.6E-08 48.5 3.1 23 7-29 5-27 (217)
350 2pbr_A DTMP kinase, thymidylat 96.8 0.0008 2.7E-08 47.1 3.2 21 9-29 2-22 (195)
351 4e22_A Cytidylate kinase; P-lo 96.8 0.00094 3.2E-08 49.2 3.5 21 8-28 28-48 (252)
352 1jbk_A CLPB protein; beta barr 96.8 0.00091 3.1E-08 46.3 3.3 23 8-30 44-66 (195)
353 1rz3_A Hypothetical protein rb 96.8 0.001 3.5E-08 47.1 3.6 24 6-29 21-44 (201)
354 2p5t_B PEZT; postsegregational 96.8 0.00065 2.2E-08 50.1 2.6 24 6-29 31-54 (253)
355 2x8a_A Nuclear valosin-contain 96.7 0.00082 2.8E-08 50.2 3.1 21 10-30 47-67 (274)
356 2kjq_A DNAA-related protein; s 96.7 0.00056 1.9E-08 46.3 2.0 22 9-30 38-59 (149)
357 3tui_C Methionine import ATP-b 96.7 0.00086 2.9E-08 52.1 3.2 22 9-30 56-77 (366)
358 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00073 2.5E-08 52.4 2.8 22 9-30 32-53 (359)
359 3umf_A Adenylate kinase; rossm 96.7 0.00089 3E-08 48.2 3.1 21 9-29 31-51 (217)
360 1e6c_A Shikimate kinase; phosp 96.7 0.00096 3.3E-08 45.8 3.1 21 9-29 4-24 (173)
361 3jvv_A Twitching mobility prot 96.7 0.00084 2.9E-08 52.1 3.0 21 9-29 125-145 (356)
362 1vht_A Dephospho-COA kinase; s 96.7 0.0012 4.1E-08 47.3 3.7 23 7-29 4-26 (218)
363 1rj9_A FTSY, signal recognitio 96.7 0.00087 3E-08 50.9 3.1 23 7-29 102-124 (304)
364 1ixz_A ATP-dependent metallopr 96.7 0.00091 3.1E-08 49.1 3.1 22 9-30 51-72 (254)
365 1z47_A CYSA, putative ABC-tran 96.7 0.0009 3.1E-08 51.8 3.2 22 9-30 43-64 (355)
366 2ze6_A Isopentenyl transferase 96.7 0.00092 3.1E-08 49.3 3.1 21 9-29 3-23 (253)
367 1zcb_A G alpha I/13; GTP-bindi 96.7 0.0011 3.8E-08 51.5 3.7 22 6-27 32-53 (362)
368 2bbs_A Cystic fibrosis transme 96.7 0.00086 3E-08 50.5 3.0 22 9-30 66-87 (290)
369 1gtv_A TMK, thymidylate kinase 96.7 0.00032 1.1E-08 50.0 0.5 21 9-29 2-22 (214)
370 1ak2_A Adenylate kinase isoenz 96.7 0.0011 3.7E-08 48.2 3.4 23 7-29 16-38 (233)
371 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0012 4.1E-08 48.8 3.6 22 8-29 5-26 (260)
372 2iyv_A Shikimate kinase, SK; t 96.7 0.001 3.5E-08 46.3 3.0 21 9-29 4-24 (184)
373 2yyz_A Sugar ABC transporter, 96.7 0.00098 3.3E-08 51.7 3.2 22 9-30 31-52 (359)
374 3rlf_A Maltose/maltodextrin im 96.7 0.001 3.4E-08 52.0 3.2 22 9-30 31-52 (381)
375 2it1_A 362AA long hypothetical 96.7 0.001 3.4E-08 51.7 3.2 22 9-30 31-52 (362)
376 3b9q_A Chloroplast SRP recepto 96.7 0.0011 3.6E-08 50.3 3.1 23 7-29 100-122 (302)
377 1zuh_A Shikimate kinase; alpha 96.6 0.0013 4.5E-08 45.0 3.4 21 9-29 9-29 (168)
378 3r20_A Cytidylate kinase; stru 96.6 0.0012 4E-08 48.1 3.2 24 6-29 8-31 (233)
379 1g29_1 MALK, maltose transport 96.6 0.0011 3.7E-08 51.8 3.2 22 9-30 31-52 (372)
380 1sq5_A Pantothenate kinase; P- 96.6 0.0012 4.3E-08 50.0 3.5 24 6-29 79-102 (308)
381 1v43_A Sugar-binding transport 96.6 0.0011 3.8E-08 51.7 3.2 22 9-30 39-60 (372)
382 2pez_A Bifunctional 3'-phospho 96.6 0.0012 4.2E-08 45.7 3.1 23 7-29 5-27 (179)
383 2ewv_A Twitching motility prot 96.6 0.001 3.6E-08 51.9 3.0 21 9-29 138-158 (372)
384 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0011 3.9E-08 47.6 3.1 21 9-29 25-45 (235)
385 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.001 3.4E-08 51.1 2.8 22 9-30 173-194 (330)
386 2vp4_A Deoxynucleoside kinase; 96.6 0.00092 3.1E-08 48.5 2.4 24 7-30 20-43 (230)
387 2gza_A Type IV secretion syste 96.6 0.00098 3.3E-08 51.8 2.7 22 9-30 177-198 (361)
388 2f6r_A COA synthase, bifunctio 96.6 0.0014 4.6E-08 49.2 3.4 24 6-29 74-97 (281)
389 3e70_C DPA, signal recognition 96.6 0.0018 6.1E-08 49.7 3.9 91 56-169 213-309 (328)
390 1iy2_A ATP-dependent metallopr 96.6 0.0013 4.6E-08 49.0 3.1 22 9-30 75-96 (278)
391 2p65_A Hypothetical protein PF 96.6 0.0011 3.9E-08 45.7 2.5 23 8-30 44-66 (187)
392 3d31_A Sulfate/molybdate ABC t 96.5 0.00092 3.1E-08 51.7 2.1 22 9-30 28-49 (348)
393 1in4_A RUVB, holliday junction 96.5 0.0014 4.7E-08 50.4 3.1 22 9-30 53-74 (334)
394 1p9r_A General secretion pathw 96.5 0.0014 4.8E-08 52.0 3.0 22 9-30 169-190 (418)
395 1m7g_A Adenylylsulfate kinase; 96.5 0.0016 5.4E-08 46.5 3.1 23 7-29 25-47 (211)
396 3bos_A Putative DNA replicatio 96.5 0.0018 6E-08 46.7 3.3 22 8-29 53-74 (242)
397 3foz_A TRNA delta(2)-isopenten 96.5 0.0022 7.4E-08 48.7 3.8 25 5-29 8-32 (316)
398 4eaq_A DTMP kinase, thymidylat 96.5 0.0024 8.2E-08 46.3 3.9 24 7-30 26-49 (229)
399 2cvh_A DNA repair and recombin 96.5 0.0017 5.7E-08 46.4 3.1 21 9-29 22-42 (220)
400 1lv7_A FTSH; alpha/beta domain 96.5 0.0016 5.6E-08 47.8 3.1 22 8-29 46-67 (257)
401 3gd7_A Fusion complex of cysti 96.5 0.0014 4.8E-08 51.4 2.8 21 9-29 49-69 (390)
402 1n0w_A DNA repair protein RAD5 96.4 0.0018 6.2E-08 46.9 3.1 22 9-30 26-47 (243)
403 3nwj_A ATSK2; P loop, shikimat 96.4 0.0015 5.2E-08 48.1 2.7 21 9-29 50-70 (250)
404 2og2_A Putative signal recogni 96.4 0.0017 5.8E-08 50.4 3.1 23 7-29 157-179 (359)
405 2oap_1 GSPE-2, type II secreti 96.4 0.0015 5.2E-08 53.1 2.9 23 9-31 262-284 (511)
406 3kta_A Chromosome segregation 96.4 0.0017 5.8E-08 45.1 2.8 21 9-29 28-48 (182)
407 1cr0_A DNA primase/helicase; R 96.4 0.0015 5.2E-08 49.1 2.7 22 9-30 37-58 (296)
408 2grj_A Dephospho-COA kinase; T 96.4 0.0024 8.2E-08 45.1 3.5 24 7-30 12-35 (192)
409 1oxx_K GLCV, glucose, ABC tran 96.4 0.00091 3.1E-08 51.8 1.4 22 9-30 33-54 (353)
410 1ltq_A Polynucleotide kinase; 96.4 0.0019 6.4E-08 48.6 3.1 22 8-29 3-24 (301)
411 2w58_A DNAI, primosome compone 96.4 0.0022 7.6E-08 45.2 3.3 23 8-30 55-77 (202)
412 2yhs_A FTSY, cell division pro 96.4 0.002 6.7E-08 52.0 3.1 23 7-29 293-315 (503)
413 2obl_A ESCN; ATPase, hydrolase 96.4 0.0019 6.6E-08 49.9 3.0 23 9-31 73-95 (347)
414 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0016 5.4E-08 52.3 2.3 22 9-30 140-161 (460)
415 1njg_A DNA polymerase III subu 96.3 0.0024 8.1E-08 45.9 3.0 21 9-29 47-67 (250)
416 3n70_A Transport activator; si 96.3 0.0026 9E-08 42.5 3.1 23 8-30 25-47 (145)
417 4ido_A Atlastin-1; GTPase, GTP 96.3 0.0089 3E-07 47.7 6.4 23 6-28 66-88 (457)
418 2chg_A Replication factor C sm 96.3 0.0025 8.6E-08 45.1 3.1 22 9-30 40-61 (226)
419 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.012 3.9E-07 45.8 7.0 19 10-28 26-44 (365)
420 3d3q_A TRNA delta(2)-isopenten 96.2 0.0032 1.1E-07 48.4 3.6 22 8-29 8-29 (340)
421 3gmt_A Adenylate kinase; ssgci 96.2 0.003 1E-07 45.8 3.2 23 7-29 8-30 (230)
422 1nij_A Hypothetical protein YJ 96.2 0.0016 5.5E-08 49.7 1.9 22 9-30 6-27 (318)
423 1svm_A Large T antigen; AAA+ f 96.2 0.0026 9E-08 49.7 3.1 21 9-29 171-191 (377)
424 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0034 1.2E-07 42.3 3.2 19 10-28 26-44 (149)
425 3h4m_A Proteasome-activating n 96.2 0.0028 9.7E-08 47.2 3.0 23 8-30 52-74 (285)
426 3b9p_A CG5977-PA, isoform A; A 96.2 0.0028 9.6E-08 47.5 3.0 23 8-30 55-77 (297)
427 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0031 1.1E-07 46.3 3.1 22 8-29 40-61 (262)
428 3crm_A TRNA delta(2)-isopenten 96.2 0.004 1.4E-07 47.5 3.8 22 8-29 6-27 (323)
429 2ga8_A Hypothetical 39.9 kDa p 96.1 0.005 1.7E-07 47.6 4.2 25 5-29 22-46 (359)
430 3zvl_A Bifunctional polynucleo 96.1 0.0042 1.4E-07 49.2 3.9 24 7-30 258-281 (416)
431 3euj_A Chromosome partition pr 96.1 0.0031 1.1E-07 50.8 3.1 21 9-29 31-51 (483)
432 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0035 1.2E-07 51.3 3.5 22 9-30 49-70 (538)
433 2dpy_A FLII, flagellum-specifi 96.1 0.003 1E-07 50.4 3.0 23 9-31 159-181 (438)
434 1tue_A Replication protein E1; 96.1 0.0026 8.8E-08 45.3 2.3 21 9-29 60-80 (212)
435 1a7j_A Phosphoribulokinase; tr 96.1 0.0018 6E-08 48.8 1.5 23 7-29 5-27 (290)
436 3b60_A Lipid A export ATP-bind 96.1 0.0031 1.1E-07 52.2 3.0 22 9-30 371-392 (582)
437 1nlf_A Regulatory protein REPA 96.1 0.003 1E-07 47.1 2.7 21 9-29 32-52 (279)
438 1q3t_A Cytidylate kinase; nucl 96.1 0.0041 1.4E-07 45.1 3.3 24 6-29 15-38 (236)
439 3b5x_A Lipid A export ATP-bind 96.1 0.0036 1.2E-07 51.8 3.3 22 9-30 371-392 (582)
440 3ake_A Cytidylate kinase; CMP 96.0 0.0044 1.5E-07 43.8 3.3 21 9-29 4-24 (208)
441 3cf0_A Transitional endoplasmi 96.0 0.0036 1.2E-07 47.2 3.0 22 9-30 51-72 (301)
442 1l8q_A Chromosomal replication 96.0 0.0036 1.2E-07 47.7 3.0 21 9-29 39-59 (324)
443 2qmh_A HPR kinase/phosphorylas 96.0 0.0038 1.3E-07 44.2 2.8 24 8-31 35-58 (205)
444 2dr3_A UPF0273 protein PH0284; 96.0 0.0036 1.2E-07 45.4 2.8 21 9-29 25-45 (247)
445 3ozx_A RNAse L inhibitor; ATP 96.0 0.0038 1.3E-07 51.1 3.1 22 9-30 27-48 (538)
446 3t15_A Ribulose bisphosphate c 96.0 0.0047 1.6E-07 46.5 3.4 24 7-30 36-59 (293)
447 3j16_B RLI1P; ribosome recycli 96.0 0.0041 1.4E-07 51.7 3.2 22 9-30 105-126 (608)
448 3ld9_A DTMP kinase, thymidylat 95.9 0.0062 2.1E-07 44.0 3.7 26 4-29 18-43 (223)
449 3syl_A Protein CBBX; photosynt 95.9 0.0056 1.9E-07 46.1 3.6 23 7-29 67-89 (309)
450 2qby_A CDC6 homolog 1, cell di 95.9 0.0039 1.3E-07 48.2 2.7 22 8-29 46-67 (386)
451 1ofh_A ATP-dependent HSL prote 95.9 0.0047 1.6E-07 46.4 3.1 22 8-29 51-72 (310)
452 2px0_A Flagellar biosynthesis 95.9 0.004 1.4E-07 47.0 2.7 21 8-28 106-126 (296)
453 2h92_A Cytidylate kinase; ross 95.9 0.0041 1.4E-07 44.4 2.6 23 7-29 3-25 (219)
454 2yl4_A ATP-binding cassette SU 95.9 0.0033 1.1E-07 52.1 2.4 22 9-30 372-393 (595)
455 1d2n_A N-ethylmaleimide-sensit 95.9 0.0075 2.6E-07 44.6 4.1 25 6-30 63-87 (272)
456 1p5z_B DCK, deoxycytidine kina 95.9 0.0038 1.3E-07 46.1 2.5 25 6-30 23-47 (263)
457 1fnn_A CDC6P, cell division co 95.9 0.0048 1.6E-07 47.9 3.1 22 9-30 46-67 (389)
458 3qf4_B Uncharacterized ABC tra 95.9 0.0037 1.3E-07 51.9 2.5 22 9-30 383-404 (598)
459 3bk7_A ABC transporter ATP-bin 95.9 0.0051 1.8E-07 51.1 3.4 22 9-30 119-140 (607)
460 1vma_A Cell division protein F 95.9 0.0051 1.7E-07 46.7 3.1 23 7-29 104-126 (306)
461 2ocp_A DGK, deoxyguanosine kin 95.9 0.0056 1.9E-07 44.6 3.3 24 7-30 2-25 (241)
462 1c9k_A COBU, adenosylcobinamid 95.9 0.0053 1.8E-07 42.8 2.9 21 10-30 2-22 (180)
463 1sxj_E Activator 1 40 kDa subu 95.8 0.0041 1.4E-07 47.8 2.5 20 10-29 39-58 (354)
464 4a82_A Cystic fibrosis transme 95.8 0.0031 1.1E-07 52.1 2.0 21 9-29 369-389 (578)
465 3ozx_A RNAse L inhibitor; ATP 95.8 0.005 1.7E-07 50.4 3.1 22 9-30 296-317 (538)
466 3tmk_A Thymidylate kinase; pho 95.8 0.0062 2.1E-07 43.8 3.3 28 1-30 1-28 (216)
467 1pzn_A RAD51, DNA repair and r 95.8 0.0046 1.6E-07 47.8 2.7 23 9-31 133-155 (349)
468 3u61_B DNA polymerase accessor 95.8 0.016 5.3E-07 44.0 5.6 43 80-123 105-148 (324)
469 3co5_A Putative two-component 95.8 0.0027 9.3E-08 42.4 1.2 23 8-30 28-50 (143)
470 4fcw_A Chaperone protein CLPB; 95.8 0.0063 2.2E-07 45.8 3.3 23 8-30 48-70 (311)
471 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0063 2.1E-07 49.8 3.5 22 9-30 314-335 (538)
472 1sxj_C Activator 1 40 kDa subu 95.8 0.0056 1.9E-07 47.0 3.0 21 10-30 49-69 (340)
473 3tqf_A HPR(Ser) kinase; transf 95.8 0.0067 2.3E-07 42.0 3.0 23 9-31 18-40 (181)
474 3qf4_A ABC transporter, ATP-bi 95.7 0.0042 1.5E-07 51.4 2.4 22 9-30 371-392 (587)
475 3bk7_A ABC transporter ATP-bin 95.7 0.0065 2.2E-07 50.5 3.5 22 9-30 384-405 (607)
476 4edh_A DTMP kinase, thymidylat 95.7 0.0083 2.8E-07 43.0 3.6 24 6-29 5-28 (213)
477 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0062 2.1E-07 46.5 3.0 23 8-30 46-68 (322)
478 1sxj_D Activator 1 41 kDa subu 95.7 0.0066 2.2E-07 46.5 3.1 22 9-30 60-81 (353)
479 3j16_B RLI1P; ribosome recycli 95.6 0.007 2.4E-07 50.3 3.2 22 10-31 381-402 (608)
480 2v1u_A Cell division control p 95.6 0.0057 1.9E-07 47.3 2.6 24 7-30 44-67 (387)
481 3eie_A Vacuolar protein sortin 95.6 0.0075 2.6E-07 45.9 3.2 23 8-30 52-74 (322)
482 2qen_A Walker-type ATPase; unk 95.6 0.0071 2.4E-07 46.1 3.1 22 9-30 33-54 (350)
483 3a8t_A Adenylate isopentenyltr 95.6 0.008 2.7E-07 46.1 3.3 22 9-30 42-63 (339)
484 2r62_A Cell division protease 95.6 0.0031 1.1E-07 46.6 1.0 21 9-29 46-66 (268)
485 1azs_C GS-alpha; complex (lyas 95.6 0.0085 2.9E-07 47.2 3.5 30 5-34 38-70 (402)
486 3pxg_A Negative regulator of g 95.6 0.0065 2.2E-07 48.9 2.8 22 8-29 202-223 (468)
487 3exa_A TRNA delta(2)-isopenten 95.6 0.011 3.6E-07 45.0 3.7 22 9-30 5-26 (322)
488 3pfi_A Holliday junction ATP-d 95.5 0.0078 2.7E-07 46.0 3.0 23 8-30 56-78 (338)
489 3qks_A DNA double-strand break 95.5 0.009 3.1E-07 42.4 3.2 19 10-28 26-44 (203)
490 2qgz_A Helicase loader, putati 95.5 0.0088 3E-07 45.4 3.3 22 8-29 153-174 (308)
491 2bjv_A PSP operon transcriptio 95.5 0.0083 2.8E-07 44.2 3.1 24 8-31 30-53 (265)
492 3uk6_A RUVB-like 2; hexameric 95.5 0.0068 2.3E-07 46.8 2.7 22 9-30 72-93 (368)
493 3v9p_A DTMP kinase, thymidylat 95.5 0.0056 1.9E-07 44.4 2.0 23 7-29 25-47 (227)
494 2fna_A Conserved hypothetical 95.5 0.0073 2.5E-07 46.1 2.7 22 9-30 32-53 (357)
495 1tf7_A KAIC; homohexamer, hexa 95.4 0.0073 2.5E-07 49.3 2.8 19 10-28 42-60 (525)
496 3m6a_A ATP-dependent protease 95.4 0.0085 2.9E-07 49.1 3.0 21 9-29 110-130 (543)
497 4b4t_K 26S protease regulatory 95.4 0.0091 3.1E-07 47.4 3.1 21 9-29 208-228 (428)
498 1um8_A ATP-dependent CLP prote 95.4 0.0092 3.1E-07 46.4 3.1 23 8-30 73-95 (376)
499 3lv8_A DTMP kinase, thymidylat 95.4 0.0091 3.1E-07 43.5 2.8 24 6-29 26-49 (236)
500 3lda_A DNA repair protein RAD5 95.4 0.0082 2.8E-07 47.3 2.8 21 9-29 180-200 (400)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5e-43 Score=256.06 Aligned_cols=165 Identities=30% Similarity=0.533 Sum_probs=140.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
+.+.+||+|+|++|||||||+++|..+.|...+.+|.. +.+...+..++..+.+++|||+|+++|..+++.++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34679999999999999999999999999999999985 56677788899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||+++++||+.+ ..|+..+.... +++|++|||||+|+.+.+. ++.+++.++++++++ +|+++||
T Consensus 90 ilv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SA 157 (216)
T 4dkx_A 90 VVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSA 157 (216)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBT
T ss_pred EEEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeC
Confidence 999999999999999 77877776654 6899999999999987654 899999999999998 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcC
Q 029177 162 KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~ 180 (197)
++|+||+++|+.|++.+..
T Consensus 158 ktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 158 KAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTTBSHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.6e-38 Score=229.35 Aligned_cols=182 Identities=80% Similarity=1.268 Sum_probs=153.6
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 81 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 81 (197)
|+..+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++.|...+..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 56667899999999999999999999999988888888877777777788888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+++|||++++++++.+...|+..+....++.|+++|+||+|+.+....... ....+..+++.+++..++..+++++||
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999855899999887788999999999999765431111 112357888999999999779999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCCcc
Q 029177 162 KTQQNVKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~~~~ 185 (197)
++|+|++++|+++++.+......+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC----
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999988765544
No 3
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.5e-36 Score=218.53 Aligned_cols=173 Identities=45% Similarity=0.819 Sum_probs=154.4
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
...+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++.+...+..+++++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 44567999999999999999999999999988888888777777888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.. .+.+..+++.++++.++..+++++||+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 999999999999997678999988888899999999999997532 234788999999999998559999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCC
Q 029177 163 TQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~~ 183 (197)
+|+|++++|+++.+.+...+.
T Consensus 171 ~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999876654
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=9.9e-37 Score=221.05 Aligned_cols=164 Identities=31% Similarity=0.558 Sum_probs=147.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
...+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 45799999999999999999999999888888888877777778889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++.+++..++. +++++||+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (206)
T 2bov_A 92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK 159 (206)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence 9999999999998 78888877765 3899999999999977543 778889999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.+..
T Consensus 160 ~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 5
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.1e-36 Score=217.70 Aligned_cols=180 Identities=33% Similarity=0.571 Sum_probs=146.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+..++..+.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999999988888888877777888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.+++.+ ..|...+.... .+.|+++|+||+|+.+. ....+++.++++.++. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSR-----------TVDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSC-----------SSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCccc-----------ccCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999998 77777776654 58999999999999743 2677888999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC------CcccccCCCCCcccC
Q 029177 163 TQQNVKTVFDAAIKVVLQPP------KPKKRKRKARPCIFL 197 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~------~~~~~~~k~~~c~~~ 197 (197)
+|+|++++|+++.+.+...+ ..+++++++.+|+||
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 99999999999999875432 223344555668775
No 6
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.5e-36 Score=214.05 Aligned_cols=173 Identities=28% Similarity=0.426 Sum_probs=150.0
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 81 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 81 (197)
|...+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++.+...+..+++.+|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 45667899999999999999999999998888888888877777788889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
+++|||++++++++.+ ..|...+.... +++|+++|+||+|+.+.+. +..+++.++++.++. +++++
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 148 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES 148 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence 9999999999999999 67877776554 4899999999999976543 888999999999998 89999
Q ss_pred cccCCCCHHHHHHHHHHHHcCCCCccc
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQPPKPKK 186 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~~~~~~ 186 (197)
||++++|++++|+++.+.+...+....
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~~~~ 175 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDGACS 175 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC-----
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999987765443
No 7
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=220.67 Aligned_cols=180 Identities=28% Similarity=0.478 Sum_probs=143.5
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
...+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 44568999999999999999999999999988888888766666666777778999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
++|||++++++++.+ ..|+..+.... .++|+++|+||+|+...+. +..+++..++...+. +++++|
T Consensus 100 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 167 (201)
T 3oes_A 100 VLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMESS 167 (201)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECC
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEEe
Confidence 999999999999999 78888877653 5789999999999986554 788899999999998 899999
Q ss_pred ccCCCCHHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIFL 197 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~ 197 (197)
|++|+|++++|+++.+.+....... .+++.|.+|
T Consensus 168 a~~~~~v~~l~~~l~~~i~~~~~~~---~~~~~c~l~ 201 (201)
T 3oes_A 168 ARENQLTQGIFTKVIQEIARVENSY---GQERRCHLM 201 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhh---ccccccccC
Confidence 9999999999999999987665543 344457664
No 8
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=5.7e-36 Score=213.56 Aligned_cols=182 Identities=63% Similarity=1.059 Sum_probs=154.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+.+.+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 34679999999999999999999999998888888887777777888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||++++.++......|+..+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+..+++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999998547988888877789999999999997642110 1111224577888999999998778999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCCcc
Q 029177 162 KTQQNVKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~~~~ 185 (197)
++|+|++++|+++.+.+...+..+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCCCC--
T ss_pred CCccCHHHHHHHHHHHHhcccccC
Confidence 999999999999999998766543
No 9
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=5.5e-36 Score=218.93 Aligned_cols=181 Identities=36% Similarity=0.658 Sum_probs=151.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
...+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||++|++.+...+..+++++|++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 35799999999999999999999999998888888877777777888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++++++.+...|+..+....+++|+++|+||+|+.+.... ...+...+.+..+++.++++.++..+++++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 999999999999448999999988889999999999999764110 011122345888999999999998789999999
Q ss_pred CCCC-HHHHHHHHHHHHcCCCCcc
Q 029177 163 TQQN-VKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 163 ~~~~-i~~~~~~i~~~~~~~~~~~ 185 (197)
+|+| ++++|+++.+.+.......
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC-----
T ss_pred CCcccHHHHHHHHHHHHhccCcCC
Confidence 9998 9999999999988765543
No 10
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.3e-36 Score=216.30 Aligned_cols=179 Identities=87% Similarity=1.369 Sum_probs=135.5
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 81 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 81 (197)
|+..+.+||+++|++|+|||||+++|..+.+...+.+++.+.+...+..++..+.+++||+||++++...+..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 45567899999999999999999999999888888888766555555567777889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.............+..+++.++++.++..+++++||
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999999985579998888777899999999999976543211122233467888999999999778999999
Q ss_pred cCCCCHHHHHHHHHHHHcC
Q 029177 162 KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~ 180 (197)
++|+|++++|+++.+.++.
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
No 11
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-35 Score=213.71 Aligned_cols=176 Identities=55% Similarity=0.998 Sum_probs=152.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+++||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 46799999999999999999999999988888888877777777788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++++++.+...|+..+....++.|+++|+||+|+.+.... .......+.+..+++.++++.++..+++++||+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence 999999999999854898888887789999999999999764311 112223345788999999999997789999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.++.
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998864
No 12
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=8.2e-36 Score=212.97 Aligned_cols=177 Identities=37% Similarity=0.725 Sum_probs=150.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
....+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.|...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45689999999999999999999999998888888887666667778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||++++++++.+...|...+....++.|+++|+||+|+.++.... ......+.+..+++.++++.++..+++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999998668888888877889999999999997532100 1112234578889999999998669999999
Q ss_pred c-CCCCHHHHHHHHHHHHcC
Q 029177 162 K-TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~-~~~~i~~~~~~i~~~~~~ 180 (197)
+ +++|++++|+++.+.+++
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998864
No 13
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=214.62 Aligned_cols=177 Identities=53% Similarity=0.909 Sum_probs=144.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
...+||+++|++|||||||+++|.++.+...+.+++.+.+...+..++..+.+++||+||++++...+..+++++|++++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 45799999999999999999999999888888888877777778889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.+++.+...|+..+....+++|+++|+||+|+....... ......+.+..+++..+++.++..+++++||+
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 177 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence 9999999999998547998888877899999999999997642110 11112245778889999999997789999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+|+|++++|+++.+.+...
T Consensus 178 ~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988644
No 14
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-36 Score=216.88 Aligned_cols=166 Identities=25% Similarity=0.459 Sum_probs=142.2
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
.....+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 45567999999999999999999999998887777777666666677788889999999999999998888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
++|||++++.+++.+ ..|...+.... ++.|+++|+||+|+.+. .+..+++..++..++. +++++
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~ 150 (199)
T 2gf0_A 84 ILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-----------EVDTREAQAVAQEWKC-AFMET 150 (199)
T ss_dssp EEEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSC-----------SSCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCcc-----------ccCHHHHHHHHHHhCC-eEEEE
Confidence 999999999999988 55665555432 47899999999999752 2667888889999997 89999
Q ss_pred cccCCCCHHHHHHHHHHHHcCC
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
||++|+|++++|+++.+.+...
T Consensus 151 Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 151 SAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp BTTTTBSHHHHHHHHHHHCSSS
T ss_pred ecCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999987654
No 15
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.8e-36 Score=214.23 Aligned_cols=168 Identities=29% Similarity=0.571 Sum_probs=117.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
.+..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999999888766666664 34456677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++.++. +++++||
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 152 (183)
T 2fu5_C 85 MLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSA 152 (183)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 67888887764 5899999999999976443 778889999999997 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
++++|++++|.++.+.+.....
T Consensus 153 ~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 153 KANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999998865433
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=209.30 Aligned_cols=169 Identities=31% Similarity=0.561 Sum_probs=147.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
....+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988777777764 45566778899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAK 153 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 999999999999998 789998888878999999999999987554 778889999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCc
Q 029177 163 TQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
+|+|++++|+++.+.+...+..
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988654433
No 17
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=210.59 Aligned_cols=165 Identities=24% Similarity=0.420 Sum_probs=141.7
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
+..+.+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+++||+||++.+... ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 345679999999999999999999999998888888887777777788999999999999999988775 5688999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE 158 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++.++. ++++
T Consensus 96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e 163 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFE 163 (187)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEE
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEE
Confidence 999999999999998 78888777653 5899999999999976544 788899999999997 8999
Q ss_pred ecc-cCCCCHHHHHHHHHHHHcC
Q 029177 159 CSS-KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 159 ~Sa-~~~~~i~~~~~~i~~~~~~ 180 (197)
+|| ++++|++++|+++++.+.+
T Consensus 164 ~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 164 VSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EeecCccccHHHHHHHHHHHHhh
Confidence 999 8999999999999998753
No 18
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=3.6e-35 Score=214.58 Aligned_cols=177 Identities=45% Similarity=0.874 Sum_probs=132.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++.+...+..+++++|++++|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence 57999999999999999999999998888888888777777788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||++++.+++.+...|+..+....+++|+++|+||+|+....... ......+.+..+++.++++.++..+++++||++
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 192 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL 192 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTT
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCC
Confidence 999999999998558999888877889999999999998653210 011122357888899999999977899999999
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 029177 164 QQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~~ 182 (197)
|+|++++|+++.+.+...+
T Consensus 193 g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 193 HDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TBSHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999887543
No 19
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=4e-35 Score=212.81 Aligned_cols=174 Identities=64% Similarity=1.082 Sum_probs=149.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46799999999999999999999999998888888887778888889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.+++.....|+..+....++.|+++|+||+|+....... ..+...+.+..+++..+++..+..+++++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 9999999999998558999998887889999999999998654211 11122344778899999999998889999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029177 163 TQQNVKTVFDAAIKVV 178 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~ 178 (197)
+|+|++++|+++.+.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 20
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=7.4e-35 Score=204.28 Aligned_cols=163 Identities=27% Similarity=0.531 Sum_probs=143.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999998888888888777777777888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+.+. +..+++.++++.++..+++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999998 6677666654 25899999999999976543 7788889999998555999999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 029177 164 QQNVKTVFDAAIKVVL 179 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~ 179 (197)
|+|++++|+++.+.+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 151 KINVNEIFYDLVRQIN 166 (167)
T ss_dssp TBSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 21
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5e-35 Score=211.91 Aligned_cols=165 Identities=31% Similarity=0.576 Sum_probs=145.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
.++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999988777777764 45566777889889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..++...+. +++++||
T Consensus 103 i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 170 (201)
T 2ew1_A 103 ILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSA 170 (201)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887765 5799999999999976543 778888999998886 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcC
Q 029177 162 KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~ 180 (197)
++|+|++++|+++.+.+..
T Consensus 171 ~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 171 KESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.8e-35 Score=208.07 Aligned_cols=164 Identities=23% Similarity=0.374 Sum_probs=141.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+.+.+||+++|++|||||||+++|.++.+...+.++ ...+...+.+++..+.+++||++|++.+. +++++|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 456899999999999999999999999998877777 44556788889999999999999998876 678899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.. .+.+..+++.++++.++..+++++||
T Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 91 FVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEecC
Confidence 99999999999998 67888887764 579999999999995321 23478899999999998569999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~ 182 (197)
++|+|++++|+++++.+...+
T Consensus 162 ~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999886543
No 23
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-35 Score=212.64 Aligned_cols=176 Identities=38% Similarity=0.729 Sum_probs=149.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.|...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999998888888876666667778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++.++++.++..+++++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 9999999999988668888888877889999999999997532100 11122345788899999999986699999999
Q ss_pred -CCCCHHHHHHHHHHHHcC
Q 029177 163 -TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 -~~~~i~~~~~~i~~~~~~ 180 (197)
+++|++++|+.+.+.+++
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998764
No 24
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-34 Score=209.23 Aligned_cols=179 Identities=49% Similarity=0.866 Sum_probs=147.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
...+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45689999999999999999999999888777788766666667888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.+++.+...|+..+....++.|+++|+||+|+....... ......+.+..+++..++...+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 9999999999998668888888877889999999999997653210 11112234778889999999998789999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCC
Q 029177 163 TQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~~ 183 (197)
+|+|++++|+++.+.++.++.
T Consensus 183 ~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 183 TKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp TCTTHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999886644
No 25
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.2e-34 Score=208.39 Aligned_cols=176 Identities=51% Similarity=0.902 Sum_probs=151.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
...+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 35689999999999999999999999988888888766666667888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||+++++++..+...|...+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 9999999999998678888888877889999999999997653211 11122345788899999999998789999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.+++
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998753
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.7e-34 Score=203.10 Aligned_cols=165 Identities=28% Similarity=0.577 Sum_probs=137.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
....+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999988777777764 33445667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++..+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 999999999999998 78887776654 5799999999999977543 778889999999986 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcC
Q 029177 162 KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~ 180 (197)
++|+|++++|+++.+.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988753
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=9.2e-35 Score=207.07 Aligned_cols=163 Identities=33% Similarity=0.535 Sum_probs=146.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++||+||++.+...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999999998888888877777788889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++++++.+ ..|+..+... ..++|+++|+||+|+.+.+. +..+++.++++.++. +++++||+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 163 (183)
T 3kkq_A 96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK 163 (183)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEeccC
Confidence 9999999999998 6777776543 26899999999999976543 888999999999996 89999999
Q ss_pred -CCCCHHHHHHHHHHHHc
Q 029177 163 -TQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 163 -~~~~i~~~~~~i~~~~~ 179 (197)
+++|++++|+++.+.+.
T Consensus 164 ~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 164 DPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SSCBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 99999999999998775
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.1e-34 Score=203.29 Aligned_cols=163 Identities=31% Similarity=0.563 Sum_probs=142.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999998888888887777777778899889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++.++++.++. +++++||++
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT 150 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999998 77877776654 3899999999999976543 778889999999997 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029177 164 QQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~ 180 (197)
|+|++++|+++.+.+.+
T Consensus 151 ~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 151 RANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998753
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.5e-34 Score=202.03 Aligned_cols=164 Identities=30% Similarity=0.540 Sum_probs=142.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
+.+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999999888777766664 34456677788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+. +..+++.++++..+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 67877776654 6899999999999976543 677888999999887 8999999
Q ss_pred cCCCCHHHHHHHHHHHHc
Q 029177 162 KTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~ 179 (197)
++|+|++++|++|.+.+.
T Consensus 151 ~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 151 KTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTCTTHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 30
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.3e-34 Score=205.47 Aligned_cols=165 Identities=20% Similarity=0.324 Sum_probs=137.7
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 81 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 81 (197)
|...+.+||+++|++|||||||+++|.++.+.. +.++..+.+...+.+++..+.+++||+||++. ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 455678999999999999999999999998876 67777777777788899899999999999986 356788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhh---C-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHY---A-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+++|||++++++++.+ ..|+..+... . +++|+++|+||+|+.+.. .+.+..+++.+++...+..+++
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence 9999999999999998 6665444332 2 589999999999995311 1237888899999888656999
Q ss_pred EecccCCCCHHHHHHHHHHHHcCC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
++||++|+|++++|+++.+.+...
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.8e-34 Score=202.53 Aligned_cols=165 Identities=35% Similarity=0.539 Sum_probs=144.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
.++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999988777777764 45566777888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+. +..+++.++++..+. +++++||+
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK 149 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence 999999999999988 678887776657899999999999976543 677888999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+++|++++|+++.+.+.+
T Consensus 150 ~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTBSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999988754
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.2e-34 Score=203.76 Aligned_cols=166 Identities=31% Similarity=0.559 Sum_probs=143.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4579999999999999999999999988777666653 444566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.. ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++..+. +++++||+
T Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (181)
T 2efe_B 90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAK 157 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCSS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEECC
Confidence 99999999999998 78888777765 5899999999999976443 778889999999987 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 029177 163 TQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~ 182 (197)
+|+|++++|+++.+.+...+
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 158 TATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SCTTHHHHHHHHHHTCC---
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999886544
No 33
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.9e-35 Score=211.48 Aligned_cols=166 Identities=30% Similarity=0.525 Sum_probs=140.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4579999999999999999999999988777777764 444667778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+. +..+++.++++.++..+++++||+
T Consensus 107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999999999998 68888887765 6899999999999976543 778889999999987689999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+++|++++|+++.+.+...
T Consensus 176 ~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 176 DSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988643
No 34
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=205.13 Aligned_cols=164 Identities=23% Similarity=0.373 Sum_probs=130.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC--cccccccCcCCCcEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF 82 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 82 (197)
++.+||+++|++|||||||+++|.++.+...+.....+.+...+.+++..+.+++||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457999999999999999999999987765544443455566778899889999999999987 566677788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
++|||++++.+++.+ ..|...+.... ++.|+++|+||+|+.+.+. +..+++..++..++. +++++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 999999999999998 67877776653 5899999999999976543 777888899999986 899999
Q ss_pred ccCCCCHHHHHHHHHHHHcC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~ 180 (197)
|++|+|++++|+++.+.+..
T Consensus 150 a~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 35
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.3e-34 Score=208.04 Aligned_cols=164 Identities=29% Similarity=0.584 Sum_probs=144.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
.+..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45679999999999999999999999988877777764 44456677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.+++...+. +++++||
T Consensus 85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 152 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSA 152 (206)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 77888887665 5799999999999976543 778888999999887 8999999
Q ss_pred cCCCCHHHHHHHHHHHHc
Q 029177 162 KTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~ 179 (197)
++|+|++++|.++.+.+.
T Consensus 153 ~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 153 LDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.6e-34 Score=205.15 Aligned_cols=167 Identities=31% Similarity=0.533 Sum_probs=146.4
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
..+.+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 34689999999999999999999999998888888887776777888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHH-hhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPEL-RHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||++++.++..+ ..|+..+ .... .+.|+++|+||+|+.+.+. +..+++..++...+. +++++||
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 153 (181)
T 2fn4_A 86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA 153 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 99999999999998 6676666 3332 5899999999999977543 778888999998887 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~~ 182 (197)
++|+|++++|+++.+.+...+
T Consensus 154 ~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999886443
No 37
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-34 Score=210.08 Aligned_cols=168 Identities=30% Similarity=0.520 Sum_probs=138.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+..+||+|+|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4579999999999999999999999988777777664 444566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+. +..+++..+++..+. +++++||+
T Consensus 91 lV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 158 (223)
T 3cpj_B 91 IVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSAL 158 (223)
T ss_dssp EEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCCC
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887764 5799999999999976543 777888999999886 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCc
Q 029177 163 TQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
+++|++++|+++.+.+......
T Consensus 159 ~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 159 NSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp -CCCHHHHHHHHHHHHTTCC--
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988755433
No 38
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=8.3e-35 Score=211.13 Aligned_cols=165 Identities=30% Similarity=0.541 Sum_probs=139.9
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
....+||+++|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 3468999999999999999999999998877777776 455566677788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. .+..+++..++......+++
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~ 152 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-----------QVATKRAQAWCYSKNNIPYF 152 (207)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-----------CSCHHHHHHHHHHTTSCCEE
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCccc-----------ccCHHHHHHHHHhcCCceEE
Confidence 999999999999988 77877665543 47899999999999732 26677888888855545899
Q ss_pred EecccCCCCHHHHHHHHHHHHcC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++||++|+|++++|+++.+.+..
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 153 ETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 39
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=7.5e-35 Score=206.47 Aligned_cols=168 Identities=28% Similarity=0.427 Sum_probs=143.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECC-eEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV 81 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 81 (197)
..+.+||+++|++|||||||+++|.++.+...+.++. .+.+...+.+++ ..+.+++||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 4567999999999999999999999988766666665 355566677776 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC---CCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYA---PTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+++|||++++.+++.+ ..|+..+.... .+.| +++|+||+|+.+.+. +..+++.++++.++. +++
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence 9999999999999988 78887776643 2455 899999999976543 778888999999997 899
Q ss_pred EecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
++||++|+|++++|+++.+.+...+.
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999876654
No 40
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=206.04 Aligned_cols=168 Identities=30% Similarity=0.618 Sum_probs=147.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 457999999999999999999999998887777776 4555677788998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++.+++..++. +++++||+
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 161 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence 99999999999998 77888887765 5799999999999976544 778889999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCc
Q 029177 163 TQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
+++|++++|+++.+.+......
T Consensus 162 ~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988755443
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=6.1e-34 Score=203.22 Aligned_cols=165 Identities=28% Similarity=0.528 Sum_probs=144.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999988777777764 445667778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.+++...+. +++++||+
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL 155 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 99999999999998 77877776654 6899999999999976543 777888999999986 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+++|++++|+++.+.+...
T Consensus 156 ~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988643
No 42
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.5e-33 Score=202.02 Aligned_cols=164 Identities=31% Similarity=0.614 Sum_probs=144.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+..+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 4579999999999999999999999988777777664 333456677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++.++. +++++||+
T Consensus 100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 167 (189)
T 2gf9_A 100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASAK 167 (189)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 77888887765 5899999999999976543 677888999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.+.+
T Consensus 168 ~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 168 ENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=6.2e-34 Score=201.56 Aligned_cols=169 Identities=34% Similarity=0.625 Sum_probs=141.4
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCC
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 79 (197)
|-.....+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (177)
T 1wms_A 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS 80 (177)
T ss_dssp -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence 34556789999999999999999999999988777777764 44466777888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 80 DVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+ + .+..+++.++++.....
T Consensus 81 ~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~----------~~~~~~~~~~~~~~~~~ 148 (177)
T 1wms_A 81 DCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE-R----------QVSTEEAQAWCRDNGDY 148 (177)
T ss_dssp SEEEEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-C----------SSCHHHHHHHHHHTTCC
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccc-c----------ccCHHHHHHHHHhcCCc
Confidence 999999999999999988 77877776543 5789999999999973 2 26778888998855556
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+++++||++|+|++++|+++.+.+.+.
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 149 PYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999988753
No 44
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1e-33 Score=199.04 Aligned_cols=163 Identities=24% Similarity=0.532 Sum_probs=143.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.+.+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999999988777777764 344566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +++++||+
T Consensus 84 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 151 (170)
T 1z0j_A 84 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAK 151 (170)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887764 6899999999999986543 778888999999886 89999999
Q ss_pred CCCCHHHHHHHHHHHHc
Q 029177 163 TQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~ 179 (197)
+++|++++|+++.+.+.
T Consensus 152 ~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 152 NAININELFIEISRRIP 168 (170)
T ss_dssp TTBSHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999998764
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.8e-34 Score=202.27 Aligned_cols=164 Identities=30% Similarity=0.589 Sum_probs=143.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999988777777764 444566677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++.++. +++++||+
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (179)
T 1z0f_A 93 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAK 160 (179)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888777665 6899999999999976543 778889999999987 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+++|++++|+++.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 161 TGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TCTTHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998753
No 46
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=5.5e-34 Score=204.63 Aligned_cols=164 Identities=29% Similarity=0.576 Sum_probs=140.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999988777666653 444566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||+
T Consensus 99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 166 (191)
T 2a5j_A 99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK 166 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 67888877664 5899999999999976543 778889999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+++|++++|+++.+.+.+
T Consensus 167 ~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 47
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.8e-34 Score=201.88 Aligned_cols=163 Identities=24% Similarity=0.408 Sum_probs=129.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc-ccccCcCCCcEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFLL 84 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 84 (197)
.+||+++|++|||||||+++|.+..+...+.++. .+.+...+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999766554443333 556667778899999999999999998876 67777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAP--TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++++++.+ ..|+..+....+ ++|+++|+||+|+.+.+. +..+++.++++..+. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA 149 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence 9999999999999 777777776653 899999999999986554 888999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+++|++++|+++.+.+..+
T Consensus 150 ~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 150 LHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999987543
No 48
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6.7e-34 Score=199.82 Aligned_cols=165 Identities=32% Similarity=0.560 Sum_probs=142.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 458999999999999999999999988777777764 4445667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.... ..+.+..+++.+++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccc-------cccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 67887777665 689999999999997642 1234778888999999987 899999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 029177 164 QQNVKTVFDAAIKVVL 179 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~ 179 (197)
|+|++++|+++.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988664
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=3.6e-34 Score=200.79 Aligned_cols=161 Identities=22% Similarity=0.382 Sum_probs=119.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 86 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 86 (197)
.+||+++|++|||||||+++|.+..+. ...++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 489999999999999999999876543 3334444555667788999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177 87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ 164 (197)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (197)
|++++++++.+ ..|...+.... +++|+++|+||+|+.+.+. +..+++..++...+. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH 148 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence 99999999998 66777766543 6899999999999976544 788899999999997 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029177 165 QNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 165 ~~i~~~~~~i~~~~~~ 180 (197)
+|++++|+++.+.+..
T Consensus 149 ~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 149 HNVQALFEGVVRQIRL 164 (166)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998753
No 50
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.1e-34 Score=202.63 Aligned_cols=165 Identities=33% Similarity=0.558 Sum_probs=143.2
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
+.+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999888777777764 55567777889889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..++...+. +++++||
T Consensus 91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 158 (179)
T 2y8e_A 91 VVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSA 158 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999988 67777776544 5899999999999976543 777888899999986 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcC
Q 029177 162 KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~ 180 (197)
++++|++++|+++.+.+..
T Consensus 159 ~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 159 KAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTTBSHHHHHHHHHHTCC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987643
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=4.6e-34 Score=203.69 Aligned_cols=164 Identities=31% Similarity=0.558 Sum_probs=145.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
...+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 46799999999999999999999999888888888877777778889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+. +..+++.++++.++. +++++||+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 163 (187)
T 2a9k_A 96 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK 163 (187)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCC
Confidence 9999999999998 77777776655 3899999999999976543 778889999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+++|++++|+++.+.+..
T Consensus 164 ~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 164 TRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998753
No 52
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-33 Score=199.50 Aligned_cols=165 Identities=36% Similarity=0.616 Sum_probs=134.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
+..+||+++|++|||||||+++|.++.+. ..+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 46799999999999999999999998875 35556654 33344557788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..+++.++. +++++||
T Consensus 88 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 155 (180)
T 2g6b_A 88 LLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSA 155 (180)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 78888887765 5899999999999976543 777888999999987 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcCC
Q 029177 162 KTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~~ 181 (197)
++++|++++|+++.+.+...
T Consensus 156 ~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 156 KTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp TTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 53
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-34 Score=207.99 Aligned_cols=165 Identities=24% Similarity=0.428 Sum_probs=135.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC-cccccccCcCCCcE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 81 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~ 81 (197)
...+||+|+|++|||||||+++|.+. .+...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 45799999999999999999999963 3444444444556677778899999999999999876 55566778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
+++|||++++++|+.+ ..|...+... .+++|+++|+||+|+.+.+. +..+++..++..++. +++++
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e~ 182 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIET 182 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEEE
Confidence 9999999999999998 6777766643 25799999999999976543 777888889988987 89999
Q ss_pred cccCCCCHHHHHHHHHHHHcCC
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
||++|+|++++|+++.+.+...
T Consensus 183 SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 183 SAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987543
No 54
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-34 Score=207.55 Aligned_cols=164 Identities=27% Similarity=0.484 Sum_probs=143.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
..+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++. ...+..+++.+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4567999999999999999999999999888888888777777788899889999999999988 667778889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+. +..+++.++++.++. +++++||
T Consensus 104 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 171 (196)
T 2atv_A 104 LVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSA 171 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEECC
Confidence 99999999999998 67777776543 5899999999999977543 778889999999986 8999999
Q ss_pred cCCC-CHHHHHHHHHHHHcC
Q 029177 162 KTQQ-NVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~-~i~~~~~~i~~~~~~ 180 (197)
++|+ |++++|+++.+.+.+
T Consensus 172 ~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 172 CTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp TTCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHh
Confidence 9999 999999999998854
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3.3e-34 Score=200.70 Aligned_cols=162 Identities=30% Similarity=0.568 Sum_probs=142.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999998888888887776777788899889999999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||++++.+++.+ ..|...+.... .+.|+++|+||+|+...+. +..+++.++++.++. +++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence 999999999998 66666665543 5899999999999976543 777888999999987 899999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 029177 164 QQNVKTVFDAAIKVVL 179 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~ 179 (197)
|+|++++|+++.+.+.
T Consensus 150 ~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 150 KTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998763
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=203.86 Aligned_cols=164 Identities=30% Similarity=0.538 Sum_probs=143.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4579999999999999999999999988777767653 444566777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++...+. +++++||+
T Consensus 103 ~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 170 (193)
T 2oil_A 103 LVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSAL 170 (193)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 67888777654 5899999999999976543 677888999999887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.+.+
T Consensus 171 ~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 171 DSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 57
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=207.04 Aligned_cols=166 Identities=24% Similarity=0.414 Sum_probs=137.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEecCCCcCccc-ccccCcCCCcEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 82 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~ 82 (197)
...+||+++|++|||||||+++|.+......+.++ +.+.+...+.+++..+.+++||++|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 45799999999999999999999764332222333 3455566778899999999999999988764 677778899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.+. +..+++.++++.++. +++++|
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence 999999999999998 77888777654 4899999999999976443 778889999999986 899999
Q ss_pred ccCCCCHHHHHHHHHHHHcCCC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~~~ 182 (197)
|++++|++++|+++++.+...+
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999886543
No 58
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=203.47 Aligned_cols=165 Identities=25% Similarity=0.521 Sum_probs=143.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++.+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4579999999999999999999999988777777764 333455667778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+. +..+++.++++.++. +++++||+
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 168 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK 168 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887765 5899999999999976443 778889999999986 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+++|++++|+++.+.+...
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTBSHHHHHHHHHHTCC--
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999977543
No 59
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=208.22 Aligned_cols=164 Identities=30% Similarity=0.556 Sum_probs=135.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999999888777777664 444566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++..+. +++++||+
T Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA~ 170 (200)
T 2o52_A 103 LVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSAL 170 (200)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 77887776654 6899999999999976543 777888999999886 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.+..
T Consensus 171 ~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 171 TGENVEEAFLKCARTILN 188 (200)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 60
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-33 Score=203.01 Aligned_cols=164 Identities=28% Similarity=0.608 Sum_probs=144.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+..+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4579999999999999999999999988777777764 444566777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++.++++.++. +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
T 1zbd_A 86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK 153 (203)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEECC
Confidence 99999999999998 77888887765 5899999999999976443 778889999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.+..
T Consensus 154 ~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=205.73 Aligned_cols=165 Identities=30% Similarity=0.554 Sum_probs=137.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+++||+||++.+...+..+++++|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 457999999999999999999999988877766666 3555666778888899999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++.++++..+..+++++||+
T Consensus 104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCC
Confidence 99999999999998 78888887765 4799999999999976543 777888899988644599999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 62
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=7e-34 Score=199.84 Aligned_cols=163 Identities=32% Similarity=0.628 Sum_probs=137.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999988777777664 3445566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+. .+..+++.++++.++. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-----------VVTADQGEALAKELGI-PFIESSAKN 148 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTC-----------CSCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcC-----------ccCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999988 78888877765 58999999999999432 2677888999999997 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029177 164 QQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~ 181 (197)
|+|++++|.++.+.+...
T Consensus 149 ~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988643
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.5e-33 Score=200.84 Aligned_cols=164 Identities=36% Similarity=0.562 Sum_probs=135.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|.+|||||||+++|.++.+...+.+++...+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 46799999999999999999999999888777787777777778888988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... .+..+++.++++.++. +++++||+
T Consensus 99 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~ 165 (190)
T 3con_A 99 VFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTR-----------TVDTKQAHELAKSYGI-PFIETSAK 165 (190)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCC-----------CSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCcc-----------cCCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999998 78887776654 47999999999999752 2677888999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+++|++++|+++.+.+...
T Consensus 166 ~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 166 TRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988643
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=6.6e-34 Score=202.07 Aligned_cols=168 Identities=33% Similarity=0.576 Sum_probs=127.9
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGAD 80 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 80 (197)
.....+||+++|++|||||||+++|.++.+...+.++.. +.....+.++ +..+.+++||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 345689999999999999999999999988777777763 4445555555 55688999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 81 VFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... .+..+++.++++..+..+
T Consensus 84 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp EEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCC
T ss_pred EEEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCe
Confidence 99999999999999998 77877766543 5789999999999964322 367788889988665568
Q ss_pred EEEecccCCCCHHHHHHHHHHHHcC
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++++||++|+|++++|+++.+.+.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 154 LFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 65
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.8e-34 Score=205.15 Aligned_cols=171 Identities=33% Similarity=0.511 Sum_probs=136.8
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 82 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 82 (197)
..+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 35679999999999999999999999988777767664 44456677888889999999999999998888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (197)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.... ...+.+..+++..++...+. +++++||
T Consensus 105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~~SA 178 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKCVPGHFGEKLAMTYGA-LFCETSA 178 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCCCCHHHHHHHHHHHTC-EEEECCT
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccccCHHHHHHHHHHcCC-eEEEeeC
Confidence 999999999999998 77888887665 57999999999999743210 12234778888999999997 8999999
Q ss_pred cCCCCHHHHHHHHHHHHcC
Q 029177 162 KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 162 ~~~~~i~~~~~~i~~~~~~ 180 (197)
++|+|++++|.++.+.+..
T Consensus 179 ~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 66
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.7e-34 Score=199.35 Aligned_cols=163 Identities=26% Similarity=0.503 Sum_probs=140.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999998877777777666666677788889999999999999998888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 86 FSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
||++++.+++.. ..|...+.... ++.|+++|+||+|+.+.+. +..+++..++..++. +++++||+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 149 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK 149 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence 999999999888 66666665432 5799999999999976543 677888889998887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+|+|++++|+++.+.+..
T Consensus 150 ~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 150 LNHNVKELFQELLNLEKR 167 (172)
T ss_dssp TTBSHHHHHHHHHHTCCS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999987643
No 67
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.6e-33 Score=202.03 Aligned_cols=164 Identities=32% Similarity=0.572 Sum_probs=141.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee--eEEEEECCe---------EEEEEEEecCCCcCcccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF--SANVVVDGS---------TVNLGLWDTAGQEDYNRLRP 73 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~~ 73 (197)
++.+||+++|++|||||||+++|.++.+...+.++....+ ...+..++. .+.+++||+||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 4579999999999999999999999988777777764333 344555554 78999999999999999999
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
.+++++|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++.+++..+
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY 157 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence 999999999999999999999998 68888877665 5899999999999976543 7778889999999
Q ss_pred CCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 152 GAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+. +++++||++++|++++|++|.+.+..
T Consensus 158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 158 GI-PYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 97 89999999999999999999998864
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=5.3e-33 Score=200.83 Aligned_cols=165 Identities=25% Similarity=0.460 Sum_probs=139.4
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeE--------------------------
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGST-------------------------- 54 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------------------- 54 (197)
|...+.+||+++|++|||||||+++|+++.+...+.++.. +.....+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 4566789999999999999999999999988877777763 3444555555544
Q ss_pred -----------EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 029177 55 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDL 123 (197)
Q Consensus 55 -----------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 123 (197)
+.+.+||+||++.+...+..+++.+|++++|||++++.++..+ ..|+..+..... .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence 8899999999999999999999999999999999999999998 788888876543 99999999999
Q ss_pred ccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.... .+..+++.++++..+. +++++||++++|++++|+++.+.+.+
T Consensus 159 ~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 159 KNKF----------QVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CC-C----------CSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccc----------cCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3322 2678889999999987 99999999999999999999988753
No 69
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.1e-33 Score=198.98 Aligned_cols=164 Identities=29% Similarity=0.600 Sum_probs=144.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 579999999999999999999999988877777763 4445667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.++..+ ..|+..+.... .++|+++|+||+|+.+. .+..+++.++++..+. +++++||+
T Consensus 94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (195)
T 1x3s_A 94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENR-----------EVDRNEGLKFARKHSM-LFIEASAK 160 (195)
T ss_dssp EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSC-----------CSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCccc-----------ccCHHHHHHHHHHcCC-EEEEecCC
Confidence 9999999999998 78888887764 57999999999999542 2677888999999987 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 029177 163 TQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~~ 182 (197)
+++|++++|+++.+.+...+
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSG
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999887653
No 70
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.4e-33 Score=200.90 Aligned_cols=163 Identities=28% Similarity=0.526 Sum_probs=139.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcc-cccccCcCCCcEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF 82 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~ 82 (197)
.+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 4579999999999999999999999988777777664 4456677788888999999999999888 7888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177 83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS 160 (197)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (197)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++.++++..+. +++++|
T Consensus 98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 165 (189)
T 1z06_A 98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETS 165 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEEe
Confidence 999999999999998 67888877764 5899999999999976543 778889999999987 899999
Q ss_pred ccCC---CCHHHHHHHHHHHHc
Q 029177 161 SKTQ---QNVKTVFDAAIKVVL 179 (197)
Q Consensus 161 a~~~---~~i~~~~~~i~~~~~ 179 (197)
|+++ +|++++|.++.+.+.
T Consensus 166 a~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC----
T ss_pred CCcCCcccCHHHHHHHHHHHHh
Confidence 9999 999999999988763
No 71
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=208.02 Aligned_cols=165 Identities=30% Similarity=0.593 Sum_probs=144.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+..+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4579999999999999999999999888777666663 444556667777789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++||+
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 168 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK 168 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 77888888766 6899999999999976554 788889999999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+|+|++++|+++.+.+...
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 169 ENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999987543
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=6.7e-33 Score=193.74 Aligned_cols=162 Identities=35% Similarity=0.583 Sum_probs=142.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 35899999999999999999999998887777877777777778888889999999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||++++.++..+ ..|+..+.... .+.|+++|+||+|+... ....+++.++++.++. +++++||++
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAAR-----------TVESRQAQDLARSYGI-PYIETSAKT 148 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCC-----------CSCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhc-----------ccCHHHHHHHHHHcCC-eEEEecCCC
Confidence 999999999998 77887777654 37999999999999762 2667888999999997 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029177 164 QQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~ 180 (197)
++|++++|+++.+.+.+
T Consensus 149 ~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 149 RQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988753
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=8.8e-34 Score=205.69 Aligned_cols=165 Identities=25% Similarity=0.365 Sum_probs=108.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCcee-eeeeEEEEECCe--EEEEEEEecCCCcCcccccccCcCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYRGA 79 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 79 (197)
...+||+++|++|||||||+++|.++ .+...+.+++. +.....+.+++. .+.+++||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999998 77777777774 566677778876 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhCC----CCCEEEEeeCCCccc-chhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 80 DVFLLAFSLISKASYENISKKWIPELRHYAP----TVPIVLVGTKQDLRE-DKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
|++++|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+.+ .+. +..+++.++++.++.
T Consensus 98 d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~~- 165 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNTL- 165 (208)
T ss_dssp CEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTTC-
T ss_pred cEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcCC-
Confidence 999999999999999999 688888887654 899999999999976 443 778899999999996
Q ss_pred EEEEecccC-CCCHHHHHHHHHHHHcCC
Q 029177 155 VYIECSSKT-QQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 155 ~~~~~Sa~~-~~~i~~~~~~i~~~~~~~ 181 (197)
+++++||++ ++|++++|+++.+.+...
T Consensus 166 ~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 166 DFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp EEEECCC-------CHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 899999999 999999999999987643
No 74
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.1e-32 Score=198.27 Aligned_cols=165 Identities=24% Similarity=0.443 Sum_probs=132.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC-cccccccCcCCCcE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 81 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~ 81 (197)
...+||+++|++|||||||+++|.+ ..+...+.++..+.+...+.+++..+.+.+||++|+.. +...+..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4569999999999999999999996 34444444444556667788899999999999999876 55566777888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 82 FLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
+++|||++++++|+.. ..|...+.... ++.|+++|+||+|+...+. +..+++..++...+. +++++
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~ 151 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET 151 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence 9999999999999998 67777666542 5799999999999976443 677788888888886 89999
Q ss_pred cccCCCCHHHHHHHHHHHHcCC
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
||++|+|++++|+++.+.+...
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999987543
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=9.8e-34 Score=203.73 Aligned_cols=165 Identities=24% Similarity=0.291 Sum_probs=132.5
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----------cee-eeeeEEE-EECCeEEEEEEEecCCCcCcc
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-----------TVF-DNFSANV-VVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~-----------~~~-~~~~~~~-~~~~~~~~~~~~D~~g~~~~~ 69 (197)
...+.+||+++|++|||||||++.+. +.+...+.+ +.. +.....+ .+++..+.+++||+||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 34568999999999999999996554 445444332 332 2222223 456778899999999999999
Q ss_pred cccccCcCCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177 70 RLRPLSYRGADVFLLAFSLI------SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ 143 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (197)
..+..+++++|++++|||++ +.+++..+ ..|+..+....+++|+++|+||+|+.+. +..++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~ 155 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEM 155 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHH
Confidence 99999999999999999999 55677776 6677777555578999999999999653 67788
Q ss_pred HHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 144 GEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 144 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+.++++..+..+++++||++|+|++++|+++.+.+...
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 99999999876899999999999999999999988654
No 76
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.9e-33 Score=204.59 Aligned_cols=165 Identities=36% Similarity=0.609 Sum_probs=140.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCe----------EEEEEEEecCCCcCcccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGS----------TVNLGLWDTAGQEDYNRLRP 73 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~ 73 (197)
++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++. .+.+++||+||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4679999999999999999999999888766666654 333445556655 68899999999999998899
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
.+++.+|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++.++++.+
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~ 171 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKY 171 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHHC
Confidence 999999999999999999999998 68887776654 5899999999999976543 7788899999999
Q ss_pred CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 152 GAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+. +++++||++++|++++|+++.+.+...
T Consensus 172 ~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 172 GI-PYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 87 899999999999999999999987653
No 77
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-32 Score=198.54 Aligned_cols=163 Identities=33% Similarity=0.635 Sum_probs=140.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3468999999999999999999999988777777664 444566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.. + .+..+++..++..++. +++++||+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~----------~~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-R----------VVTADQGEALAKELGI-PFIESSAK 164 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSS-C----------CSCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc-c----------ccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888877765 4799999999999943 2 2677888899999987 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+++|++++|+++.+.+..
T Consensus 165 ~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 78
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=6.2e-32 Score=209.13 Aligned_cols=176 Identities=63% Similarity=1.072 Sum_probs=152.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
..+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++.+...+..+++.+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 45899999999999999999999999988888888777777888899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
||++++.++..+...|...+....+++|+++|+||+|+.+.... .......+.+..+++..+++..+..+++++||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999855788888887778999999999999754210 0111122457888999999999977899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029177 164 QQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~ 181 (197)
|+|++++|+++.+.++.+
T Consensus 314 ~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 314 QRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999988754
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=6.3e-33 Score=202.96 Aligned_cols=170 Identities=28% Similarity=0.434 Sum_probs=138.6
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 80 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 80 (197)
.....+||+++|++|||||||+++|.++.+...+.++... ........ ++..+.+.+||+||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 4556899999999999999999999998877666666533 33333333 344488999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177 81 VFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC 159 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++
T Consensus 87 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 154 (218)
T 4djt_A 87 GAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEI 154 (218)
T ss_dssp EEEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEE
T ss_pred EEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEE
Confidence 99999999999999998 68888877665 4599999999999976544 778888889888887 89999
Q ss_pred cccCCCCHHHHHHHHHHHHcCCCCc
Q 029177 160 SSKTQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
||++|+|++++|+++.+.+......
T Consensus 155 Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 155 SAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp BTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred ecCCCCCHHHHHHHHHHHHhccccc
Confidence 9999999999999999998765544
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=9.2e-32 Score=193.84 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=124.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
....||+|+|++|||||||+++|.++.+.. .+.+|.... ...+...+ +.+++||+||++.+...+..+++++|+++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN-VETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE-EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee-EEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 467899999999999999999999998877 667776422 22333333 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC---------CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH-HHHcCC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA---------PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL-KKLIGA 153 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 153 (197)
+|||+++++++..+ ..|+..+.... +++|+++|+||+|+..... ...+........ ++..+
T Consensus 92 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~- 162 (199)
T 4bas_A 92 FVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP- 162 (199)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC-
T ss_pred EEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe-
Confidence 99999999999998 55655554331 2799999999999976421 000111111111 13345
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 184 (197)
.+++++||++|+|++++|++|.+.+.....+
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 4899999999999999999999988765443
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=7.7e-33 Score=202.99 Aligned_cols=166 Identities=27% Similarity=0.468 Sum_probs=141.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
...+||+++|++|||||||+++|+.+.+...+.++. .+.......+++..+.+++||+||++.+...+..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 457999999999999999999988777666666665 3555666778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT 163 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (197)
+|||++++.++..+ ..|+..+....+++|+++|+||+|+.+... . .+...+++..+. +++++||++
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------~-~~~~~~~~~~~~-~~~~~Sa~~ 158 (221)
T 3gj0_A 93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----------K-AKSIVFHRKKNL-QYYDISAKS 158 (221)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS-----------C-GGGCCHHHHHTC-EEEECBGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc-----------c-HHHHHHHHHcCC-EEEEEeCCC
Confidence 99999999999999 789998888878999999999999976431 1 244567777786 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCc
Q 029177 164 QQNVKTVFDAAIKVVLQPPKP 184 (197)
Q Consensus 164 ~~~i~~~~~~i~~~~~~~~~~ 184 (197)
|.|++++|+++.+.+......
T Consensus 159 ~~gi~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp TBTTTHHHHHHHHHHHTCTTC
T ss_pred CCCHHHHHHHHHHHHHhCccc
Confidence 999999999999998766543
No 82
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=211.93 Aligned_cols=174 Identities=64% Similarity=1.090 Sum_probs=146.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++++...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 46799999999999999999999999888888888777666667778888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.+++.....|+..+....++.|+++|+||+|+.+..... ......+.+..+++.++++..+..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 9999999999998548888888766789999999999997643210 00111124666778888888887689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029177 163 TQQNVKTVFDAAIKVV 178 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~ 178 (197)
+|+|++++|+++.+.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 83
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=206.80 Aligned_cols=164 Identities=30% Similarity=0.616 Sum_probs=132.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4579999999999999999999999888766656553 445567778898899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..++..++. +++++||+
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~ 178 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 178 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999999 77888887665 4799999999999976543 555566788888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+++|++++|+++.+.+..
T Consensus 179 ~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp --HHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887654
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.98 E-value=2.7e-31 Score=191.78 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=120.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+. .+.+|.... ...+.+++ +.+++||+||++.++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999988764 455554332 34566777 788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-----------
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI----------- 151 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 151 (197)
|||+++++++... ..|+..+... ..+.|+++|+||+|+... +..+++.++....
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence 9999999999998 6666665543 258999999999999652 5666666665532
Q ss_pred -----CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 152 -----GAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 152 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
...+++++||++|+|++++|+++.+.+
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 335899999999999999999998643
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=9.7e-31 Score=187.69 Aligned_cols=155 Identities=16% Similarity=0.233 Sum_probs=123.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+++|++|||||||+++|.++.+. .+.++... ....+.+++ +.+++||+||++.++..+..+++.+|++++|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP-TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC-EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC-CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4679999999999999999999998774 45555433 245566777 7889999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-----------C
Q 029177 86 FSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-----------G 152 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 152 (197)
||++++++++.. ..|+..+... ..+.|+++|+||+|+.+. +..+++.+..... .
T Consensus 98 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 98 VDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp EETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSSC
T ss_pred EECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCccccccccccccc
Confidence 999999999998 5666655442 258999999999999752 4555555554321 3
Q ss_pred CcEEEEecccCCCCHHHHHHHHHHH
Q 029177 153 AAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 153 ~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
..+++++||++|+|++++|+++.+.
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhh
Confidence 3589999999999999999999764
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=8.8e-31 Score=184.21 Aligned_cols=164 Identities=13% Similarity=0.179 Sum_probs=123.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+. .+.++.. .....+.+++ +.+++||+||++.+...+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG-FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS-EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc-cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 35689999999999999999999998874 3445543 2234455665 788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
|||++++.++... ..|+..+.... .+.|+++|+||+|+.+... ...+.......++...+. +++++||+
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSAT 151 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCC
Confidence 9999999999988 45554443322 5899999999999976421 000111111112223344 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029177 163 TQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~~ 181 (197)
+|+|++++|+++.+.+...
T Consensus 152 ~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhhc
Confidence 9999999999999987543
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.3e-31 Score=187.66 Aligned_cols=163 Identities=16% Similarity=0.216 Sum_probs=122.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+. .+.+|.. .....+.+++ +.+++||+||++++...+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999988775 4445543 2234455666 788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-----HcCCcEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-----LIGAAVYI 157 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (197)
|||++++++++.. ..|+..+... ..+.|+++|+||+|+.+. ...++..+... ..+ .+++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~ 155 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHIQ 155 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSC-EEEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCC-cEEE
Confidence 9999999999998 6676666554 258999999999999653 33344433332 223 4899
Q ss_pred EecccCCCCHHHHHHHHHHHHcCCCCcc
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQPPKPK 185 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 185 (197)
++||++|+|++++|+++.+.+.......
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred EccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999886665443
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.9e-30 Score=185.18 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=124.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++. ...+.+|... ....+.+++ +.+++||+||++++...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF-NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE-EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 467999999999999999999999887 5566666542 234455565 788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-----HcCCcEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-----LIGAAVYI 157 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (197)
|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+.. ..++..+... ..+ .+++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 157 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHH-WRIQ 157 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCc-eEEE
Confidence 9999999999998 5565555433 2589999999999997632 2233222221 223 4899
Q ss_pred EecccCCCCHHHHHHHHHHHHcCC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
++||++|+|++++|+++.+.+.+.
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987543
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=187.34 Aligned_cols=159 Identities=15% Similarity=0.219 Sum_probs=125.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.+.+||+++|++|||||||+++|.++. +...+.++.. .....+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 357999999999999999999999876 5555655553 3344555565 68889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH--Hc--CCcE
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK--LI--GAAV 155 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~ 155 (197)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... ...++..++.. .. ...+
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPWH 162 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCceE
Confidence 99999999999998 55655554432 47999999999999653 34455555543 21 1348
Q ss_pred EEEecccCCCCHHHHHHHHHHHHc
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
++++||++|+|++++|+++.+.+.
T Consensus 163 ~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 163 ICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEEccCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=8.4e-32 Score=188.31 Aligned_cols=154 Identities=15% Similarity=0.196 Sum_probs=118.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 87 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 87 (197)
+||+++|++|||||||+++|.++.+.. +.||.. .....+...+ +.+++||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887753 455543 2233333444 788999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-H----HHHcCCcEEEEec
Q 029177 88 LISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-L----KKLIGAAVYIECS 160 (197)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~S 160 (197)
+++++++... ..|+..+... .++.|+++|+||+|+.+.. ..++... + ++..+ .+++++|
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~S 142 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRN-WYIQATC 142 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCC-EEEEECB
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCcc-EEEEEcc
Confidence 9999999988 5666555432 2589999999999996531 1122211 1 11223 4799999
Q ss_pred ccCCCCHHHHHHHHHHHHc
Q 029177 161 SKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~ 179 (197)
|++|+|++++|+++.+.+.
T Consensus 143 a~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 143 ATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TTTTBTHHHHHHHHHHHC-
T ss_pred cCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998774
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.9e-30 Score=185.77 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=123.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+|+|++|||||||+++|.++.+...+.++....+. .+...+ +.+++||+||++++...+..+++++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 45799999999999999999999999887777777644433 233444 788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-H---cCCcEEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-L---IGAAVYIE 158 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~ 158 (197)
|||++++++++.+ ..|+..+... ..+.|+++|+||+|+... ...++..+... . ....++++
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGA------------LDEKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccC------------CCHHHHHHHhChhhhccCCeeEEE
Confidence 9999999999998 5555554432 258999999999999753 12222211111 1 12347999
Q ss_pred ecccCCCCHHHHHHHHHHHHcC
Q 029177 159 CSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+||++|+|++++|+++.+.+..
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987744
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=5.2e-31 Score=189.91 Aligned_cols=167 Identities=13% Similarity=0.184 Sum_probs=122.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEE-CCeEEEEEEEecCCCcCccccc---ccCcCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYRGA 79 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~---~~~~~~~ 79 (197)
.+.+||+++|++|||||||++++.+. +........ .........+ ++..+.+++||+||++.|.... ..+++++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 46799999999999999999987764 322211111 1111222233 3566889999999999987766 7889999
Q ss_pred cEEEEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----HcCC
Q 029177 80 DVFLLAFSLISK--ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK----LIGA 153 (197)
Q Consensus 80 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 153 (197)
|++++|||++++ +++..+ ..|+..+....+++|+++|+||+|+....... ...+.+..+++.++++ ..+.
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred CEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhcCCc
Confidence 999999999998 666666 56777766566799999999999986532100 0001256667778888 5665
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHH
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+++++||++ +|++++|..+++.+
T Consensus 173 -~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 -SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp -EEEEECTTS-THHHHHHHHHHHHT
T ss_pred -ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999999875
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.9e-31 Score=190.75 Aligned_cols=157 Identities=12% Similarity=0.163 Sum_probs=115.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|..+.+. .+.+|.. .....+...+ +.+++||+||++.+...+..+++++|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 46799999999999999999999988764 3333332 2233444555 788999999999999999899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH-----HHHcCCcEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL-----KKLIGAAVYI 157 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 157 (197)
|||++++++++.. ..|+..+.... ++.|+++|+||+|+.+. ...++..+. +...+ .+++
T Consensus 103 v~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~ 168 (192)
T 2b6h_A 103 VVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNA------------MPVSELTDKLGLQHLRSRT-WYVQ 168 (192)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCSSCC-EEEE
T ss_pred EEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCc-eEEE
Confidence 9999999999998 56666554322 58999999999999653 111221111 11223 3799
Q ss_pred EecccCCCCHHHHHHHHHHHHc
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
++||++|+|++++|+++.+.+.
T Consensus 169 ~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 169 ATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp ECBTTTTBTHHHHHHHHHHHTT
T ss_pred ECcCCCcCCHHHHHHHHHHHHh
Confidence 9999999999999999998774
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=7.9e-31 Score=187.72 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=122.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|..+.+.. +.+|.. .....+..++ +.+++||+||++.+...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 467999999999999999999999877643 444433 2233455555 788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-----HHHHcCCcEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-----LKKLIGAAVYI 157 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 157 (197)
|||+++++++... ..|+..+.... ++.|+++|+||+|+.+.. ..++..+ .+...+ .+++
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 161 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRT-WTIV 161 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCc-eEEE
Confidence 9999999999988 55555544332 589999999999997642 1122221 112233 3799
Q ss_pred EecccCCCCHHHHHHHHHHHHcC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++||++++|++++|+++.+.+..
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EccCCCccCHHHHHHHHHHHHHh
Confidence 99999999999999999998754
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.5e-30 Score=185.20 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=120.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+ ..+.++... ....+.+++ +.+++||+||++.+...+..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSS-SCEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCce-eeEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999999877 344444432 234455666 788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-----HcCCcEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-----LIGAAVYI 157 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (197)
|||++++++++.+ ..|+..+... ..+.|+++|+||+|+.+. ...++..+... ..+ .+++
T Consensus 95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~ 160 (181)
T 2h17_A 95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHIQ 160 (181)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSC-EEEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCc-eEEE
Confidence 9999999999998 5555555443 268999999999999653 23333333321 223 3899
Q ss_pred EecccCCCCHHHHHHHHHHH
Q 029177 158 ECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~ 177 (197)
++||++|+|++++|+++.+.
T Consensus 161 ~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 161 ACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECBTTTTBTHHHHHHHHHTC
T ss_pred EccCCCCcCHHHHHHHHHhh
Confidence 99999999999999999764
No 96
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=2.1e-29 Score=181.84 Aligned_cols=164 Identities=33% Similarity=0.578 Sum_probs=139.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+..+||+++|++|||||||+++|.+..+...+.++.. +.....+.+++..+.+++||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 3468999999999999999999999988777777663 445667888999899999999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||+++..+++.+ ..|+..+.... .+.|+++++||+|+.+... +..++++.++...+. +++++||+
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999887 67777666543 5789999999999976543 667888999998886 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
++.|++++|+++.+.+..
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=2.4e-31 Score=189.88 Aligned_cols=166 Identities=22% Similarity=0.320 Sum_probs=121.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCcee-eeeeEEEEE---CCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 80 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 80 (197)
.+||+++|++|||||||+++|.+. .+...+.+|.. +.....+.+ ++..+.+++||++|++.|...++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 55555666653 333333322 235678999999999999988888999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc---HHHHHHHHHHcCCc--
Q 029177 81 VFLLAFSLISK-ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT---TAQGEELKKLIGAA-- 154 (197)
Q Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 154 (197)
++++|||++++ .+++.+ ..|+..+....++.|+++|+||+|+.+... +. .+.+..+++.++..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence 99999999997 578887 788888877667899999999999976442 22 34456667667763
Q ss_pred -EEEEecccCCC-CHHHHHHHHHHHHcCCCC
Q 029177 155 -VYIECSSKTQQ-NVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 155 -~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~~ 183 (197)
+++++||+++. +++++++.+.+.+...+.
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 38999999996 999999999998866543
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.4e-30 Score=184.27 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=119.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+ ..+.++.. .....+.+++ +.+++||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG-FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT-EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC-eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5679999999999999999999998754 23333332 2233455565 788899999999999888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH-----HHcCCcEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK-----KLIGAAVYI 157 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 157 (197)
|||++++++++.. ..|+..+... ..+.|+++|+||+|+.+.. ..++..+.. ...+ .+++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 155 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRV-WQIQ 155 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCc-eEEE
Confidence 9999999999998 5666555432 2589999999999997532 222222211 1123 4799
Q ss_pred EecccCCCCHHHHHHHHHHHHcC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++||++|+|++++|+++.+.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC--
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=5.2e-30 Score=182.33 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=119.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|++|||||||+++|.++.+ ..+.++.. .....+.+++ +.+++||+||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5679999999999999999999998766 34444443 2234455565 788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc----CCcEEEE
Q 029177 85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI----GAAVYIE 158 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (197)
|||++++++++.. ..|+..+... ..+.|+++|+||+|+.+. ...++..+..... ...++++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~ 158 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSWSIVA 158 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCEEEEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCceEEEE
Confidence 9999999999998 5666666554 368999999999999653 2233333332211 1237999
Q ss_pred ecccCCCCHHHHHHHHHHHHc
Q 029177 159 CSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
+||++|+|++++|+++.+.+.
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 159 SSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EBGGGTBTHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=1.9e-30 Score=189.20 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=116.8
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEecCCCcCccc-ccccCcCC
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRG 78 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~ 78 (197)
|....+.+||+++|++|||||||+++|.++.+...+.++...... +.+++. .+.+++||+||++.+.. .+..+++.
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 78 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS 78 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhh
Confidence 455667899999999999999999999999887777655433333 555543 57899999999999887 78888999
Q ss_pred CcEEEEEEECCChh-hHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccchhhhc---------------C-------
Q 029177 79 ADVFLLAFSLISKA-SYENISKKWIPELRHY---APTVPIVLVGTKQDLREDKQYLI---------------N------- 132 (197)
Q Consensus 79 ~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~---------------~------- 132 (197)
+|++++|||+++.. ++......|...+... .+++|+++|+||+|+........ .
T Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 79 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence 99999999999964 4555545666655442 24799999999999976431000 0
Q ss_pred --CCCCCCccHHHHHHHHHHcC--CcEEEEecccCC------CCHHHHHHHHHHH
Q 029177 133 --HPGATPITTAQGEELKKLIG--AAVYIECSSKTQ------QNVKTVFDAAIKV 177 (197)
Q Consensus 133 --~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~ 177 (197)
....+.+..+++..|+.... ..+++++||++| +|++++|++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00000000111111111111 458999999999 9999999999875
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=8e-29 Score=177.84 Aligned_cols=162 Identities=33% Similarity=0.579 Sum_probs=139.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
+..++|+++|++|||||||+++|.+..+...+.++.. +.....+.+++..+.+++||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3568999999999999999999999988777777764 444667888998899999999999999988888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177 84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK 162 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (197)
+|||.++..+++.+ ..|+..+.... .+.|+++++||+|+.+... ...++++.++...+. .++++||+
T Consensus 107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sal 174 (191)
T 1oix_A 107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSAL 174 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999887 66777666543 5789999999999976443 667889999998886 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029177 163 TQQNVKTVFDAAIKVV 178 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~ 178 (197)
++.|++++|+.+.+.+
T Consensus 175 d~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 175 DSTNVEAAFQTILTEI 190 (191)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=6e-29 Score=175.98 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=119.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.+.++|+++|++|||||||+++|.++.+...+.++. .+.....+.+++ ..+.+||+||++.+...+...+..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 467899999999999999999999988876665554 333345566777 45679999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--------CcE
Q 029177 84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--------AAV 155 (197)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 155 (197)
+|||++++...... .++..+.. .++|+++|+||+|+... ..++........+ ..+
T Consensus 84 ~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 146 (178)
T 2lkc_A 84 LVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEA-------------NPDRVMQELMEYNLVPEEWGGDTI 146 (178)
T ss_dssp EEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCS-------------CHHHHHHHHTTTTCCBTTTTSSEE
T ss_pred EEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcC-------------CHHHHHHHHHhcCcChhHcCCccc
Confidence 99999985433332 12233332 37899999999999752 1122222222222 148
Q ss_pred EEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
++++||++|+|++++|+++.+.+...+.
T Consensus 147 ~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 147 FCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999988755433
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=190.11 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=123.7
Q ss_pred cceEEEEEECCC---------CCCHHHHHHHHhc---CCCCCCCCCce-e-eeeeEEE--------------EECCeEEE
Q 029177 5 ARFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-F-DNFSANV--------------VVDGSTVN 56 (197)
Q Consensus 5 ~~~~ki~vvG~~---------~~GKstli~~l~~---~~~~~~~~~~~-~-~~~~~~~--------------~~~~~~~~ 56 (197)
.+.+||+++|.+ |||||||+++|.+ +.+...+.+++ . +.....+ .+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 457999999999 9999999999999 66666676765 1 2221111 14567789
Q ss_pred EEEEe-----------------------cCCCcCcccccccCcC---------------------CCcEEEEEEECCCh-
Q 029177 57 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFLLAFSLISK- 91 (197)
Q Consensus 57 ~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~- 91 (197)
+++|| ++|+++|...+..++. ++|++++|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888887 79999999999999
Q ss_pred -hhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHH
Q 029177 92 -ASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVK 168 (197)
Q Consensus 92 -~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 168 (197)
++++.+ ..|+..+... .+++|+++|+||+|+...+. + +++.+++......+++++||++++|++
T Consensus 177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~~~~e~SAk~g~gv~ 243 (255)
T 3c5h_A 177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNLQVVETSARSNVNVD 243 (255)
T ss_dssp --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSCCEEECBTTTTBSHH
T ss_pred hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCCeEEEEECCCCCCHH
Confidence 999998 7888777654 25899999999999976543 3 567778876433489999999999999
Q ss_pred HHHHHHHHHHc
Q 029177 169 TVFDAAIKVVL 179 (197)
Q Consensus 169 ~~~~~i~~~~~ 179 (197)
++|+++.+.+.
T Consensus 244 elf~~l~~~l~ 254 (255)
T 3c5h_A 244 LAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998763
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=8.5e-29 Score=173.65 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=113.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccc------cccCcC-
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR- 77 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~~- 77 (197)
+.++|+++|++|||||||+++|.+..+.....++. .+.....+.+++ ..+++|||||++.+... ...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 35899999999999999999999876644444433 344444556666 57889999999887532 234443
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 78 -GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 78 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++|++++|+|+++.++. ..|+..+... +.|+++|+||+|+..... +.. ++.++++.++. ++
T Consensus 80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~ 141 (165)
T 2wji_A 80 EKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KV 141 (165)
T ss_dssp HCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CE
Confidence 79999999999986543 3455555543 799999999999975432 222 35678888886 89
Q ss_pred EEecccCCCCHHHHHHHHHHHH
Q 029177 157 IECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+++||++|+|++++|+++.+.+
T Consensus 142 ~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 142 VPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998865
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=1.2e-28 Score=189.00 Aligned_cols=167 Identities=20% Similarity=0.261 Sum_probs=127.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc-----ccccccCcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR 77 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~ 77 (197)
..+||+++|++|||||||+++|+++. +.. .+.+|.... ...+.+++ .+.+++||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~-~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE-HSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEE-EEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceE-EEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 35899999999999999999999873 322 233333322 22344444 478999999999988 778888899
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHH---HHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-
Q 029177 78 GADVFLLAFSLISKASYENISKKWI---PELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA- 153 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (197)
++|++++|||++++++++.+ ..|. ..+....+++|+++|+||+|+.+...+. ....+..+++.+++..++.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~----~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE----ELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH----HHHHHHHHHHHHHHHTTTCC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh----HHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999988 5554 4444456789999999999997632100 0000455778899999983
Q ss_pred -cEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 154 -AVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 154 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.+++++||++ .++.++|..+++.+..
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 6999999999 9999999999887654
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=189.07 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=115.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 85 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 85 (197)
+.+||+|+|++|||||||+++|.++.+...+ +|.... ...+...+ +.+++|||||++.+...+..+++.+|++++|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999988764332 332211 22334444 7889999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEEec
Q 029177 86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIECS 160 (197)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S 160 (197)
||++++.++..+...|...+.... +++|+++|+||+|+.+.. ..++....... ....+++++|
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCCEEEEEE
Confidence 999999999998555555554433 589999999999997632 12222211111 1124799999
Q ss_pred ccCCCCHHHHHHHHHHHHcCC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~~ 181 (197)
|++|+|++++|++|.+.+.+.
T Consensus 308 Ak~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 308 ATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TTTTBTHHHHHHHHHHHHTC-
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999987643
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=7e-28 Score=177.45 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=117.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcCcc---------ccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPL 74 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~ 74 (197)
.+.+||+++|++|||||||+++|.++.+.... ..++...........+ ..+.+|||||+.... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 45799999999999999999999998764222 2222333333334455 678899999984321 11123
Q ss_pred CcCCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHH---HHHHHHHH
Q 029177 75 SYRGADVFLLAFSLISKASYENI-SKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTA---QGEELKKL 150 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 150 (197)
++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+.+... +..+ ...+++..
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 174 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN 174 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence 46788999999999999886522 1356666666556899999999999976443 4433 45667766
Q ss_pred cC-CcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 151 IG-AAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 151 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
.+ ..+++++||++|+|++++|+++.+.+...+
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 175 VKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 65 248999999999999999999999886543
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=1.9e-29 Score=192.59 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=118.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---ccccCcCCCcEE
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 82 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~ 82 (197)
||+++|++|||||||++++.++.++. .+.+|....+.. ++ ..+.+++|||+||++|.. .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999888664332 234554333321 23 348899999999999964 357889999999
Q ss_pred EEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEE
Q 029177 83 LLAFSLISK--ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVY 156 (197)
Q Consensus 83 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (197)
++|||++++ +.+... ..|+..+....+++|++++|||+|+.....+. ...+.+..+++.++++. ++. +|
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~---~~~R~V~~~~~~~la~~~~~~~~i-~f 151 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV---DAQRDIMQRTGEELLELGLDGVQV-SF 151 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH---HHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhh---hHHHHhhHHHHHHHHhhcccccCc-eE
Confidence 999999998 333333 34455555556799999999999997642100 00012667777888886 454 89
Q ss_pred EEecccCCCCHHHHHHHHHHHHcCC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
++|||++ .++.++|..+++.++..
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhh
Confidence 9999998 69999999999877643
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=7.2e-27 Score=190.07 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=120.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
.+.+||+++|.+|||||||+++|.++.+. .+.+|.... ...+...+ +.+++|||||++.+...+..+++++|++++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~-~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFN-VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCcccee-EEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35699999999999999999999998864 344554322 22344444 788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHH-hhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEE
Q 029177 85 AFSLISKASYENISKKWIPEL-RHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIE 158 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 158 (197)
|||+++++++..+ ..|+..+ .... .++|+++|+||+|+.+. ...++....... ....++++
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 462 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQP 462 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSC------------CCHHHHHHHTTCTTCCSSCEEEEE
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcC------------CCHHHHHHHhchhhhhcCCeEEEE
Confidence 9999999999999 4554444 3322 58999999999999653 222222221110 11237999
Q ss_pred ecccCCCCHHHHHHHHHHHHcCCC
Q 029177 159 CSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
+||++|+|++++|++|.+.+....
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHCC---
T ss_pred EECCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999774443
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=1.5e-27 Score=166.10 Aligned_cols=150 Identities=22% Similarity=0.171 Sum_probs=107.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc-------ccccccCcCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG 78 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~ 78 (197)
.||+++|++|+|||||+++|.++.+. ..+.+++.+.....+..++. .+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 23333334455556666774 6789999999873 2334556889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE 158 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+... ++.+++ ..+..++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~ 140 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP 140 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence 999999999998755433 233333443 3789999999999976421 223344 566557999
Q ss_pred ecccCCCCHHHHHHHHHHHH
Q 029177 159 CSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 159 ~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+||++|+|++++|+++.+.+
T Consensus 141 ~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 141 TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CBTTTTBSHHHHHHHHHHHC
T ss_pred EecccCCChHHHHHHHHHhC
Confidence 99999999999999998864
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.8e-27 Score=169.96 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=119.3
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc------ccccCc
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY 76 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~ 76 (197)
..+.++|+++|++|||||||+++|.+..+.....+++ .+.....+..++ ..+.+|||||++.+.. .+..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 3467999999999999999999999865533333333 344455566666 6788999999988752 334444
Q ss_pred C--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 77 R--GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 77 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
. .+|++++|+|.++. +.. ..|...+.. .+.|+++|+||+|+..... +. ..+.++++.++.
T Consensus 82 ~~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~- 143 (188)
T 2wjg_A 82 INEKPDLVVNIVDATAL---ERN-LYLTLQLME--MGANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV- 143 (188)
T ss_dssp HHHCCSEEEEEEEGGGH---HHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-
T ss_pred hccCCCEEEEEecchhH---HHH-HHHHHHHHh--cCCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-
Confidence 3 58999999998864 344 456665554 3789999999999976442 22 345778888886
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
+++++||++++|++++|+++.+.+....
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 144 KVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999886554
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=7.8e-28 Score=169.94 Aligned_cols=153 Identities=21% Similarity=0.244 Sum_probs=112.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 75 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 75 (197)
..+||+++|++|||||||+++|.+..+ ...+.+++.+.+...+.+++. .+.+|||||++.+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 357999999999999999999998754 233444555556667777874 57899999987643211 124
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
++.+|++++|||++++.+++. ..|...+.... .++|+++|+||+|+.+... .++...+ .
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------------~~~~~~~-~ 140 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL-----------------GMSEVNG-H 140 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------------EEEEETT-E
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh-----------------hhhhccC-C
Confidence 789999999999999988764 45666665554 4799999999999954211 0111223 4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+++++||++|+|++++|+++.+.+..
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999999987643
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.9e-27 Score=170.74 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=106.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCC----------CcCccccc
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG----------QEDYNRLR 72 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 72 (197)
....++|+++|++|||||||+++|.++.+...+.++..... ......++ .+.+||+|| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34679999999999999999999999876554444432222 12223343 578999999 55555556
Q ss_pred ccCcCCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccH--HHHHH-
Q 029177 73 PLSYRGA---DVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITT--AQGEE- 146 (197)
Q Consensus 73 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~- 146 (197)
..+++.+ |++++|+|++++.++... .+...+.. .+.|+++|+||+|+..... +.. +++.+
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~ 162 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQT 162 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHHH
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHHH
Confidence 6666555 999999999998887764 23333433 3789999999999976542 221 22332
Q ss_pred HHHHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 147 LKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 147 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
++.. ...+++++||++++|++++|+++.+.+.
T Consensus 163 ~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 163 LNID-PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HTCC-TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred Hccc-CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2222 2358999999999999999999998763
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.95 E-value=1.4e-27 Score=195.77 Aligned_cols=165 Identities=22% Similarity=0.299 Sum_probs=122.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-------EEE--CCeEEEEEEEecCCCcCccccccc
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-------VVV--DGSTVNLGLWDTAGQEDYNRLRPL 74 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~g~~~~~~~~~~ 74 (197)
..+.+||+++|.+|||||||+++|.+..+...+.++....+... +.+ ++..+.+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 45679999999999999999999999988777777764433321 111 233578999999999999999999
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA 154 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+++.+|++++|||+++.+ .. ..|+..+....++.|+++|+||+|+.+... +..+++..++...+.
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~- 182 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN- 182 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT-
T ss_pred HccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC-
Confidence 999999999999998763 34 678888888777899999999999976543 677888888888887
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 155 VYIECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
+++++||++|+|++++++++.+.+.....
T Consensus 183 ~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 183 RFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp CEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred ceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 79999999999999999999998876543
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=5.3e-28 Score=172.80 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=116.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCC-----------CcCcccccccCc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY 76 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~ 76 (197)
+||+++|++|||||||+++|.++.+...+.++.. ......... .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT-RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT-TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc-ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999888766666542 112223333 577999999 455556666666
Q ss_pred CC-CcEEEEEEECCChhhHHHHHHHHHHH--------H-hhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177 77 RG-ADVFLLAFSLISKASYENISKKWIPE--------L-RHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE 145 (197)
Q Consensus 77 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~--------~-~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
+. +++++++|++.+..++......|... + ... ..+.|+++|+||+|+.... .+++.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~ 143 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN 143 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence 66 77777777777778877764555432 1 111 1479999999999997632 45677
Q ss_pred HHHHHcCCc------EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 146 ELKKLIGAA------VYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 146 ~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
++++.++.. +++++||++|+|++++|+++.+.+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 888888862 4799999999999999999999886543
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.4e-26 Score=173.46 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=118.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc------ccCc-
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY- 76 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~- 76 (197)
.+.++|+++|++|||||||+++|.+..+.. .+.+++.+.....+...+ ..+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 467899999999999999999999876533 233333444444555555 688899999998876543 3444
Q ss_pred -CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 77 -RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 77 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..+|++++|+|+++.++.. .|...+... ++|+++|+||+|+...+. +. .+...+++.++. +
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~ 142 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P 142 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence 5899999999999976533 344444443 799999999999976543 22 236778888887 8
Q ss_pred EEEecccCCCCHHHHHHHHHHHHc
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
++++||++|+|++++|+++.+.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 143 VVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeeCCcCHHHHHHHHHHHhh
Confidence 999999999999999999999775
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=3.1e-26 Score=175.68 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=125.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcc----------c
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN----------R 70 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~----------~ 70 (197)
+...-.|+++|.+|||||||+|+|++..+.. ....++..........+ + ..+.||||||+..+. .
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHH
Confidence 3456789999999999999999999987642 22233333333334444 4 678899999986654 3
Q ss_pred ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177 71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL 150 (197)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
....+++.+|++++|+|++++.+..+. ..|+..+... +.|+++|+||+|+..+.. ...+....+...
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~~ 151 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHKK 151 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHHH
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHHh
Confidence 445567899999999999999888887 6667777764 799999999999973332 456677778888
Q ss_pred cC-CcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 151 IG-AAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 151 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
++ ..+++++||++|+|++++|+++.+.+...
T Consensus 152 ~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 152 HPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred ccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 74 55899999999999999999999988543
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=9.9e-27 Score=166.73 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=111.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEE-EECCeEEEEEEEecCC----------CcCcccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAG----------QEDYNRLRP 73 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~~~ 73 (197)
...+||+++|++|||||||+++|+++.+. .+.++......... ..+. .+.+||+|| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45689999999999999999999998642 23333322222222 2232 467999999 444555555
Q ss_pred cCcCC---CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177 74 LSYRG---ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL 150 (197)
Q Consensus 74 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
.+++. +|++++|+|+++..+.... .+...+... +.|+++|+||+|+.+... .....+++.+++..
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHS
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhh
Confidence 55544 4999999999887554443 222333333 689999999999975432 11444666777777
Q ss_pred cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 151 IGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 151 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+..+++++||++|+|++++|+++.+.+.
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 67668999999999999999999998774
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=3.6e-26 Score=172.17 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=112.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc------ccccCcC-
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR- 77 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~- 77 (197)
..++|+++|++|||||||+++|.+... ...+.+++.+... ..+.. ...+++||+||+..+.. ....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 357999999999999999999998653 3344333333222 23343 46788999999988763 3344443
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 78 -GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 78 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+|++++|+|+++.++.. .|...+.. .+.|+++|+||+|+..... +. .+...+++.++. ++
T Consensus 79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v 140 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV 140 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence 699999999999875543 34444444 3799999999999976443 22 345678888887 89
Q ss_pred EEecccCCCCHHHHHHHHHHHHc
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
+++||++|+|++++|+++.+.+.
T Consensus 141 i~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 141 VATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp EECBTTTTBSHHHHHHHHHHSCT
T ss_pred EEEEccCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998653
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=2.4e-25 Score=170.04 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=113.8
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCC-CceeeeeeEEEEECCeEEEEEEEecCCCcCc--------cc
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NR 70 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~ 70 (197)
|-...+..+|+++|.+|||||||+|+|++..+.. ... .++..........++ ..+.+|||||..+. ..
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~ 78 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQ 78 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHH
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHH
Confidence 3344566789999999999999999999987642 222 233332222233344 68889999998763 33
Q ss_pred ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177 71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL 150 (197)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
....+++.+|++++|||++++.+... ..+...+....++.|+++|+||+|+..... . ..+..+.
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~----~~~~~~~ 142 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------E----AMKAYHE 142 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------H----HHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------H----HHHHHHH
Confidence 44556889999999999998766544 344456666556799999999999965321 0 1222233
Q ss_pred -cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 151 -IGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 151 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+..+++++||++|.|++++++.+.+.+.
T Consensus 143 ~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 143 LLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp TSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred hcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 35457999999999999999999998664
No 121
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=3.7e-25 Score=178.09 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=99.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSY 76 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 76 (197)
.++|+++|.+|||||||+|+|.+.. +...+.+++.+.....+.+++ +.+.+|||||++++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 5899999999999999999999874 344455566666677777888 678899999998766443 3467
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+.+|++++|+|++++.+++.. ..+...+.. ..+.|+++|+||+|+..... . ...++... +..++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~-~~~~~ 374 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDEL-TEIRELKAA-HPAAKFLTVANKLDRAANAD----------A---LIRAIADG-TGTEV 374 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGH-HHHHHHHHH-CTTSEEEEEEECTTSCTTTH----------H---HHHHHHHH-HTSCE
T ss_pred ccCCEEEEEEECCCCcchhhh-HHHHHHHHh-cCCCCEEEEEECcCCCCccc----------h---hHHHHHhc-CCCce
Confidence 899999999999999887432 222222222 23789999999999976432 2 12334443 22489
Q ss_pred EEecccCCCCHHHHHHHHHHHHc
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
+++||++|+|++++++++.+.+.
T Consensus 375 i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 375 IGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999886
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=4.8e-26 Score=170.24 Aligned_cols=149 Identities=13% Similarity=0.207 Sum_probs=113.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc----------ccccCc-
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY- 76 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~- 76 (197)
+|+++|.+|||||||+|+|.+..+.. .+.+++.+.....+..++. .+.+||+||+..+.. ....++
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 89999999999999999999875533 3333445555666777774 778999999987764 334455
Q ss_pred -CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 77 -RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 77 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..+|++++|+|+++.++...+ ...+... +.|+++|+||+|+..... .. .....+++.++. +
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~ 142 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC-S 142 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-C
T ss_pred hCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-C
Confidence 889999999999997654443 3333333 789999999999976542 11 123557778886 8
Q ss_pred EEEecccCCCCHHHHHHHHHHH
Q 029177 156 YIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
++++||++|+|++++|+++.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 143 VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999999886
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=3.3e-25 Score=167.20 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=116.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEecCCCcCccc------ccccCc--
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY-- 76 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-- 76 (197)
+.++|+++|++|||||||+++|.+..+.....+ .+.+.....+...+ ..+.+||+||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 358999999999999999999998766333333 33445555666677 4578999999988765 344444
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.++|++++|+|+++.+. . ..|...+... ...|+++|+||+|+.+... ... ....+++.++. ++
T Consensus 80 ~~~d~vi~v~D~~~~~~---~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~ 142 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---N-LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV 142 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---H-HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred cCCcEEEEEecCCcchh---h-HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence 68999999999998643 2 2333333332 2389999999999876543 222 25678888886 89
Q ss_pred EEecccCCCCHHHHHHHHHHHHcCC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
+++||++|.|++++|+.+.+.+...
T Consensus 143 ~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 143 IPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999987544
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.1e-25 Score=164.79 Aligned_cols=165 Identities=10% Similarity=-0.017 Sum_probs=108.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcC----------ccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQED----------YNR 70 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~----------~~~ 70 (197)
...++|+++|.+|||||||+++|+++.+ .....+++.... ..... .....+.+|||||... +..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 4568999999999999999999999762 222323322211 22222 2336788999999533 233
Q ss_pred ccccCcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177 71 LRPLSYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL 147 (197)
Q Consensus 71 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
....++. .+|++++|+|+++..+... ..|+..+... +.|+++|+||+|+...... ....+...+.
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~ 172 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQES--------INALRATQKS 172 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHH--------HHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhH--------HHHHHHHHHH
Confidence 3333433 4889999999998655433 3556666653 7899999999999764320 0011222233
Q ss_pred HHHc------CCcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 148 KKLI------GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 148 ~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
.... ...+++++||++|+|++++|++|.+.+.....
T Consensus 173 l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 173 LDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 3332 45689999999999999999999998865543
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=4.3e-26 Score=172.25 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=114.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc----------c
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------L 74 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----------~ 74 (197)
+.++|+++|.+|+|||||+|+|.+..+.... .+++.+.....+...+ ..+.+|||||+..+..... .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 4589999999999999999999987653333 3333455555566666 4667999999988763211 1
Q ss_pred C--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177 75 S--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG 152 (197)
Q Consensus 75 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+ .+.+|++++|+|+++.++.... ...+... ++|+++|+||+|+.+... .. .....+++.++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~-~~~~~l~~~lg 142 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQN----------IR-IEIDALSARLG 142 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHTT----------EE-ECHHHHHHHHT
T ss_pred HHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhhh----------HH-HHHHHHHHhcC
Confidence 2 2689999999999986654443 3333333 799999999999976432 11 22466778888
Q ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 153 AAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
. +++++||++|+|++++++++.+.+...
T Consensus 143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 C-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 6 899999999999999999998876544
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=2.6e-25 Score=178.11 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=112.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----------cccc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----------RLRP 73 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~ 73 (197)
..+||+++|.+|||||||+|+|++..+ ...+.+++.+.....+..++. .+++|||||+.+.. ....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 568999999999999999999998765 344555656666667777874 57899999984332 2222
Q ss_pred -cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH-HHHHHHc
Q 029177 74 -LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG-EELKKLI 151 (197)
Q Consensus 74 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 151 (197)
.+++.+|++++|+|++++.++.+. .|...+... +.|+++|+||+|+.+... ...++. .++.+.+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF 317 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence 356789999999999999888875 566666543 799999999999976432 332222 2222222
Q ss_pred ---CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 152 ---GAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 152 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
+..+++++||++|+|++++|+.+.+.+.
T Consensus 318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 318 QFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp GGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 3348999999999999999999988765
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=4.2e-25 Score=177.82 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=117.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCC----------CcCccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR 72 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 72 (197)
...+||+++|.+|+|||||+++|.+.. ....+.+++.+.....+..++. .+++||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 356899999999999999999999754 2344555556666667777774 778999999 45555444
Q ss_pred cc-CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 73 PL-SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 73 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
.. +++.+|++++|+|+++..+... ..|...+.. .+.|+++|+||+|+.+.+. ...+++.+.++..
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence 43 5788999999999998655444 455566655 3799999999999976443 5556666665554
Q ss_pred ----CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 152 ----GAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 152 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
+..+++++||++|+|++++|+++.+.+.
T Consensus 337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 3458999999999999999999998764
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=2.8e-24 Score=172.20 Aligned_cols=152 Identities=23% Similarity=0.222 Sum_probs=105.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc---------ccccccCcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSYR 77 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~ 77 (197)
+|+++|.||||||||+|+|.+... ...+.+++.+.....+.+++. .+++|||||.+.. ...+..+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 799999999999999999998763 344555556666677778884 5779999998753 233455689
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH-HHHHHHcCCcEE
Q 029177 78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG-EELKKLIGAAVY 156 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 156 (197)
++|++++|+|+++..+..+. .+...++.. +.|+++|+||+|+... . ..++ .++. .++..++
T Consensus 81 ~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~~ 142 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGEP 142 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCSC
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCCE
Confidence 99999999999887655442 223333333 6899999999998542 1 1222 3343 4565468
Q ss_pred EEecccCCCCHHHHHHHHHHHHcC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+++||++|.|++++++++.+.+..
T Consensus 143 ~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 143 IPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCHHHHHHHHHHhccc
Confidence 999999999999999999988763
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.1e-25 Score=164.41 Aligned_cols=142 Identities=11% Similarity=0.133 Sum_probs=101.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCC---
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 78 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--- 78 (197)
.+.++|+++|++|||||||+++|.+..+.. .+.++....+ ....+.+||+||++.++..+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 457899999999999999999999987644 2333332222 33578899999999998888877776
Q ss_pred -CcEEEEEEECC-ChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCcccchhhhcCCCCCCCcc------HHHHH
Q 029177 79 -ADVFLLAFSLI-SKASYENISKKWIPELRHY-----APTVPIVLVGTKQDLREDKQYLINHPGATPIT------TAQGE 145 (197)
Q Consensus 79 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~ 145 (197)
+|++++|||++ +++++... ..|+..+... .+++|+++|+||+|+..... +. .+++.
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~l~~~~~ 150 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP----------PSKIKDALESEIQ 150 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC----------HHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC----------HHHHHHHHHHHHH
Confidence 89999999999 88888888 4555444332 25899999999999976432 22 45566
Q ss_pred HHHHHcCCcEEEEecccCCCC
Q 029177 146 ELKKLIGAAVYIECSSKTQQN 166 (197)
Q Consensus 146 ~~~~~~~~~~~~~~Sa~~~~~ 166 (197)
.++...+. +++++||+++++
T Consensus 151 ~~~~~~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 151 KVIERRKK-SLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHH-HHHC--------
T ss_pred HHHHHHhc-cccccccccccc
Confidence 77777665 788999998754
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.8e-23 Score=162.33 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=116.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc---------ccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---------RPL 74 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---------~~~ 74 (197)
...++|+++|.+|||||||+++|.+..... .+..++.......+...+ ..+.+|||||....... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 356899999999999999999999876422 222233222233333444 67889999998654211 112
Q ss_pred CcCCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177 75 SYRGADVFLLAFSLISKA--SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG 152 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
....+|++++|+|+++.. +++.. ..|+..+....++.|+++|+||+|+..... + +++.+++...+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~----------~--~~~~~~~~~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN----------I--KRLEKFVKEKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH----------H--HHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH----------H--HHHHHHHHhcC
Confidence 345689999999999887 66766 677777776555899999999999976432 2 44556666666
Q ss_pred CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 153 AAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
. +++++||++|+|++++++++.+.+.
T Consensus 310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 310 L-NPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp C-CCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred C-CeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 5 8999999999999999999998774
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=3.1e-24 Score=172.88 Aligned_cols=151 Identities=21% Similarity=0.245 Sum_probs=115.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc-Ccccc--------cccC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS 75 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~ 75 (197)
.++|+++|.+|||||||+|+|.+.. +...+..++.+.....+.+++ ..+.+|||||.+ .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999864 355566666777777788887 567899999998 65432 2235
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
++.+|++++|+|++++.+++.. . +++.+ .+.|+++|+||+|+.+. +..++..++.. .+ .+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~-il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~-~~ 380 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TD-RH 380 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CS-TT
T ss_pred hhcccEEEEEecCCCCCCHHHH-H-HHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CC-Cc
Confidence 6789999999999999887664 3 33433 37899999999999642 23344444432 22 37
Q ss_pred EEEecccCCCCHHHHHHHHHHHHc
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
++++||++|+|+++++++|.+.+.
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998754
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=8.1e-25 Score=173.52 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=115.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc-------C
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-------S 75 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-------~ 75 (197)
...++|+++|++|+|||||+++|++..+. ..+.+++.+.....+...+. ..+.+|||||+.++...... +
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 35789999999999999999999987652 33444445555566666654 37889999999988765333 6
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+..+|++++|+|++..+. . ..|+..+... ++|+++|+||+|+..... . +...++++.++. +
T Consensus 111 l~~aD~vllVvD~~~~~~---~-~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----------~--~~~~~l~~~~g~-~ 171 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY---E-DDVVNLFKEM--EIPFVVVVNKIDVLGEKA----------E--ELKGLYESRYEA-K 171 (423)
T ss_dssp HTSCSEEEEECSSSCCHH---H-HHHHHHHHHT--TCCEEEECCCCTTTTCCC----------T--HHHHHSSCCTTC-C
T ss_pred HhcCCEEEEEEeCCChHH---H-HHHHHHHHhc--CCCEEEEEeCcCCCCccH----------H--HHHHHHHHHcCC-C
Confidence 788999999999833322 2 4566666665 799999999999976532 2 566677777786 8
Q ss_pred EEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
++++||++|+|++++|+++.+.+...
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999988554
No 133
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=1.1e-22 Score=155.38 Aligned_cols=158 Identities=16% Similarity=0.109 Sum_probs=111.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCc---------Ccccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP 73 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~ 73 (197)
.+..+|+++|++|||||||+|+|++..+. .....++.......+..++ ..+.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 34568999999999999999999987652 1222233222222233444 578899999987 3445566
Q ss_pred cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177 74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA 153 (197)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
..++.+|++++|+|+++ -+... ..+...+.. .+.|+++++||+|+..... ...+...++...++.
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF 148 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred HHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence 78899999999999987 33222 223333432 3789999999999976221 233455666666776
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+++++||++++|++++++.+.+.+.
T Consensus 149 ~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 149 LDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp SEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999999998664
No 134
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=2.8e-23 Score=166.66 Aligned_cols=153 Identities=23% Similarity=0.303 Sum_probs=107.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccCc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSY 76 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 76 (197)
.++|+++|++|||||||+|+|.+.. +.....+++.+.....+.+++ ..+.+|||||+.++...+ ...+
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 5899999999999999999999853 344455555566666777888 567899999987654432 2357
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177 77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 156 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
..+|++++|+|++++.+... ..|+..+. +.|+++|+||+|+..... .. ....+. ...++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~---~~~~~ 360 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE---NITQI 360 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT---TCCCE
T ss_pred hcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc---cCCcE
Confidence 88999999999999877666 35555554 369999999999976543 11 000111 23479
Q ss_pred EEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 157 IECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 157 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
+++||++|+|++++++++.+.+....
T Consensus 361 i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 361 VHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999886543
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=1.7e-22 Score=160.23 Aligned_cols=169 Identities=12% Similarity=0.012 Sum_probs=114.0
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-------EEE---------EE---CCeEEEEEEEecCC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-------ANV---------VV---DGSTVNLGLWDTAG 64 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-------~~~---------~~---~~~~~~~~~~D~~g 64 (197)
....++|+++|++|+|||||+++|++................ ... .. ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 345799999999999999999999875332210000000000 000 00 11236889999999
Q ss_pred CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH
Q 029177 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
|++|...+...+..+|++++|+|+++..+.... ..++..+... ...|+++|+||+|+.+.... ....++.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~--------~~~~~~i 154 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEEA--------LSQYRQI 154 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------HHHHHHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHc-CCCCEEEEEECccccchHHH--------HHHHHHH
Confidence 999998888889999999999999998655544 4455555443 23589999999999764320 0111233
Q ss_pred HHHHHHcC--CcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 145 EELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 145 ~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
.++...++ ..+++++||++|+|++++++++.+.+..+.
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 33333221 348999999999999999999998775443
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=1.3e-23 Score=162.76 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=117.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC----cccccccCc---CCCc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGAD 80 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~---~~~~ 80 (197)
+|+++|.+|||||||+++|+..... ..+..++.......+.+++. ..+.+||+||... +..+...++ ..+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6899999999999999999986532 23433443333334445442 4678999999532 333434444 4599
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-
Q 029177 81 VFLLAFSLIS---KASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA- 153 (197)
Q Consensus 81 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (197)
++++|+|+++ +++++.. ..|...+..+. .+.|+++|+||+|+.... +...++++.+..
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~~~ 303 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD 303 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred EEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhhcC
Confidence 9999999999 7888888 77888887764 479999999999996421 345566666652
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 154 AVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
.+++++||++++|+++++.+|.+.+...+.
T Consensus 304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 304 YPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 479999999999999999999998865543
No 137
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=8e-23 Score=158.79 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=97.3
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENISKKWIPELRHY--APTVPIVLVGTKQD 122 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D 122 (197)
+.+++||++|++.++..|..++++++++|+|||+++ ..++.+. ..|+..+... .+++|+++++||+|
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECcC
Confidence 789999999999999999999999999999999999 4568888 5555555543 36899999999999
Q ss_pred cccchhhh-----cCCCCCCCccHHHHHHHHHH----------cCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 123 LREDKQYL-----INHPGATPITTAQGEELKKL----------IGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 123 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+.+..... ..+.....+..+++..++.. .....+++|||++++|++++|+++.+.+..
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 96543100 01111123677888888873 234578999999999999999999998864
No 138
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=1.2e-22 Score=152.35 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=107.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCc--eeeeeeEEEEECCeEEEEEEEecCCCcCcccccc---------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP--------- 73 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------- 73 (197)
..++|+|+|++|||||||+++|++.. +...+.++ +.......+..++ ..+.+|||||+.++.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999876 44444443 2333344455666 5678999999876543322
Q ss_pred --cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEee-CCCcccchhhhcCCCCCCCccH-------HH
Q 029177 74 --LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGT-KQDLREDKQYLINHPGATPITT-------AQ 143 (197)
Q Consensus 74 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~n-K~D~~~~~~~~~~~~~~~~~~~-------~~ 143 (197)
..++.+|++++|+|+++..........++..+.......|.++++| |+|+.+.. +.. ++
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~~ 167 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNKA 167 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCHH
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchHH
Confidence 2568899999999998633222211222222211111356666666 99997431 111 33
Q ss_pred HHHHHHHcCCcE--E--EEecccCCCCHHHHHHHHHHHHcC
Q 029177 144 GEELKKLIGAAV--Y--IECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 144 ~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+..+....+... + +++||+++.|++++|.++.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 168 LSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 455666666421 2 789999999999999999987754
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=3.1e-22 Score=160.36 Aligned_cols=158 Identities=20% Similarity=0.174 Sum_probs=107.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-----------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 72 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------- 72 (197)
..+||+++|++|||||||+|+|.+... ...+.+++.+.....+.+++. .+.+|||||...+....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998754 344555555666667778885 56799999985443221
Q ss_pred -ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-HHHHH
Q 029177 73 -PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-ELKKL 150 (197)
Q Consensus 73 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 150 (197)
...++.+|++++++|+++..+.... .+...+.. .+.|+++|+||+|+.+... ...++.. .+.+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 322 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK 322 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence 1235678999999999987766553 34444443 3789999999999976432 2233222 22222
Q ss_pred c---CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 151 I---GAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 151 ~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
+ +..+++++||++|.|++++|+.+.+.+.
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2 3348999999999999999999987653
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=1.2e-22 Score=164.08 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=112.7
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCC-------CCCCCCC-ceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL 74 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 74 (197)
...+.++|+++|++++|||||+++|.+.. +..+..+ .+.+.....+.+++ ..+.+||+||+++|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 44568999999999999999999999865 2222222 12222223344566 67889999999999888888
Q ss_pred CcCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177 75 SYRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI 151 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
.+..+|++++|+|+++ +.+.+.+ ..+... ++|+++++||+|+.+.... ....++..++....
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l-----~~~~~~--~ip~IvviNK~Dl~~~~~~--------~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM-----LILDHF--NIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQST 157 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH-----HHHHHT--TCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHS
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH-----HHHHHc--CCCEEEEEECCCcccchhH--------HHHHHHHHHHHhhh
Confidence 8999999999999998 4444443 223332 6889999999999753210 02234555565554
Q ss_pred ---CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 152 ---GAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 152 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
...+++++||++|+|+++++++|.+.+.
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 1348999999999999999999999774
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=9.8e-22 Score=156.13 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=105.9
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCCC--ceeeee-eEEEEE-------------C--C----eEEEE
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNF-SANVVV-------------D--G----STVNL 57 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~-~~~~~~-------------~--~----~~~~~ 57 (197)
+....++|+++|+.++|||||+++|.+. .+..+..+ |....+ ...+.. + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 4456799999999999999999999853 33333323 221111 111111 1 1 13789
Q ss_pred EEEecCCCcCcccccccCcCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177 58 GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH 133 (197)
Q Consensus 58 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 133 (197)
.+||+|||++|...+...+..+|++++|+|+++. .+.+.+ .. +.. ....|+++++||+|+.+...
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~----~~~-l~~~~iivv~NK~Dl~~~~~----- 152 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MA----LEI-LGIDKIIIVQNKIDLVDEKQ----- 152 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HH----HHH-TTCCCEEEEEECTTSSCTTT-----
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HH----HHH-cCCCeEEEEEEccCCCCHHH-----
Confidence 9999999999988777788899999999999954 444444 22 221 22358999999999976431
Q ss_pred CCCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 134 PGATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
.....++..++...+ ...+++++||++|+|+++++++|.+.+..+.
T Consensus 153 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~ 200 (408)
T 1s0u_A 153 ---AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK 200 (408)
T ss_dssp ---TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred ---HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 012345566666653 2358999999999999999999998776543
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=3.8e-22 Score=164.02 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=117.0
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhc--CCCCCCC-----C---------CceeeeeeEEEEE---CCeEEEEEEEecC
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY-----V---------PTVFDNFSANVVV---DGSTVNLGLWDTA 63 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~~~-----~---------~~~~~~~~~~~~~---~~~~~~~~~~D~~ 63 (197)
...+..+|+++|+.++|||||+++|+. +.+.... . ..+.......+.+ ++..+.+++||||
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP 81 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP 81 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence 446678999999999999999999986 2221110 0 0000000112222 4556899999999
Q ss_pred CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ 143 (197)
Q Consensus 64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (197)
|+.+|...+...++.+|++++|+|+++..+.... ..|..... .++|+++|+||+|+.... ..+.
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------~~~v 145 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------VDRV 145 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHH
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------HHHH
Confidence 9999988888889999999999999998887776 56655443 278999999999997532 2233
Q ss_pred HHHHHHHcCCc--EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 144 GEELKKLIGAA--VYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 144 ~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
..++.+.++.. +++++||++|.|++++++++.+.+..+.
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 45566655542 4899999999999999999999887654
No 143
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=1.6e-24 Score=175.95 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=113.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 84 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 84 (197)
+..+|+++|++++|||||+++|.+..+...+.+++. +.....+..++ ...++|||||||+.|..++...++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 457899999999999999999998655444444332 22222233321 1367899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH---HHHc-CCcEEEEec
Q 029177 85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL---KKLI-GAAVYIECS 160 (197)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~S 160 (197)
|+|+++....... ..| ..+.. .++|+++++||+|+.+... ..+. .+...+ +..+ +..+++++|
T Consensus 82 VVDa~dg~~~qt~-e~l-~~~~~--~~vPiIVViNKiDl~~~~~--------~~v~-~~l~~~~~~~e~~~~~~~iv~vS 148 (537)
T 3izy_P 82 VVAADDGVMKQTV-ESI-QHAKD--AHVPIVLAINKCDKAEADP--------EKVK-KELLAYDVVCEDYGGDVQAVHVS 148 (537)
T ss_dssp ECBSSSCCCHHHH-HHH-HHHHT--TTCCEEECCBSGGGTTTSC--------CSSS-SHHHHTTSCCCCSSSSEEECCCC
T ss_pred EEECCCCccHHHH-HHH-HHHHH--cCCcEEEEEecccccccch--------HHHH-HHHHhhhhhHHhcCCCceEEEEE
Confidence 9999997766654 333 33333 3789999999999975321 0011 111111 1122 235899999
Q ss_pred ccCCCCHHHHHHHHHHHHcC
Q 029177 161 SKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 161 a~~~~~i~~~~~~i~~~~~~ 180 (197)
|++|+|++++++++...+..
T Consensus 149 AktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 149 ALTGENMMALAEATIALAEM 168 (537)
T ss_dssp SSSSCSSHHHHHHHHHHHTT
T ss_pred CCCCCCchhHHHHHHHhhhc
Confidence 99999999999999987643
No 144
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.88 E-value=7.2e-23 Score=159.02 Aligned_cols=126 Identities=16% Similarity=0.099 Sum_probs=93.0
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeC
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENISKKWIPELRHY--APTVPIVLVGTK 120 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK 120 (197)
..+.+++||++|++.++..|..++++++++|+|||++ +.++++.. ..|+..+... .+++|+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 78899988 5565555443 368999999999
Q ss_pred CCcccchhhh--------cCCCC---CCCccHHHHHHHHHH---------------cCCcEEEEecccCCCCHHHHHHHH
Q 029177 121 QDLREDKQYL--------INHPG---ATPITTAQGEELKKL---------------IGAAVYIECSSKTQQNVKTVFDAA 174 (197)
Q Consensus 121 ~D~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~~~~~i 174 (197)
+|+.+..... ..+.. ......+++..++.. .....+++|||++++|++++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 9997543210 00000 011235677777443 123356899999999999999999
Q ss_pred HHHHc
Q 029177 175 IKVVL 179 (197)
Q Consensus 175 ~~~~~ 179 (197)
.+.+.
T Consensus 340 ~~~I~ 344 (354)
T 2xtz_A 340 DETLR 344 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 145
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=1.8e-22 Score=166.08 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=112.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CCCc------e-eeeee--EEEEE---CCeEEEEEEEecCCCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YVPT------V-FDNFS--ANVVV---DGSTVNLGLWDTAGQE 66 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----~~~~------~-~~~~~--~~~~~---~~~~~~~~~~D~~g~~ 66 (197)
+..+|+++|+.++|||||+++|+.. .+... ...+ . .+... ..+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4679999999999999999999862 22110 0000 0 01111 12222 4556899999999999
Q ss_pred CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177 67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
+|...+...++.+|++++|+|+++..+.... ..|...... ++|+++|+||+|+.... ..+...+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~------------~~~v~~e 146 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD------------PERVAEE 146 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC------------HHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc------------HHHHHHH
Confidence 9998888889999999999999998777776 556554433 68999999999997532 2233455
Q ss_pred HHHHcCCc--EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 147 LKKLIGAA--VYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 147 ~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
+...++.. +++++||++|.|++++++++.+.+..+.
T Consensus 147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 66666642 4899999999999999999999887654
No 146
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=5.8e-24 Score=170.26 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=100.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCc--------CcccccccCcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR 77 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 77 (197)
.+|+++|.+|||||||+|+|.+..+. ....+++.+.....+...+ ..+++|||||++ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999986552 2333343344333333344 568899999986 34555666788
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
++|++++|+|++++.+..+. .+...+.. .+.|+++|+||+|+..... . ..++. .++..+++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~-----~---------~~~~~-~lg~~~~~ 142 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA-----N---------IYDFY-SLGFGEPY 142 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC----------C---------CCSSG-GGSSCCCE
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchh-----h---------HHHHH-HcCCCCeE
Confidence 99999999999988776553 34455554 3789999999999875321 0 01122 34544789
Q ss_pred EecccCCCCHHHHHHHHHHHHcC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++||++|.|+.++++++.+.+..
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred EEeCcCCCChHHHHHHHHHhcCc
Confidence 99999999999999999998864
No 147
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=8.5e-22 Score=151.07 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=98.8
Q ss_pred EEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-hC-CCCCEE
Q 029177 48 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENISKKWIPELRH-YA-PTVPIV 115 (197)
Q Consensus 48 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~-~~~p~i 115 (197)
+...+ +.+++||++||+.++..|.+++++++++|+|||++ +.+++.+. ..|+..+.. .. +++|++
T Consensus 162 ~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~ii 238 (327)
T 3ohm_A 162 FDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVI 238 (327)
T ss_dssp EEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEE
T ss_pred EEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEE
Confidence 34444 78999999999999999999999999999999665 66778877 444444433 22 689999
Q ss_pred EEeeCCCcccchhh------hcCCCCCCCccHHHHHHHHH----------HcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 116 LVGTKQDLREDKQY------LINHPGATPITTAQGEELKK----------LIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 116 iv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
+++||+|+.+.+.. ...+........+++.++.. ..+ ..++++||++++|++++|..+.+.++
T Consensus 239 L~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 239 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp EEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 99999999765421 11222223467788888743 334 47889999999999999999999887
Q ss_pred CCC
Q 029177 180 QPP 182 (197)
Q Consensus 180 ~~~ 182 (197)
+..
T Consensus 318 ~~~ 320 (327)
T 3ohm_A 318 QLN 320 (327)
T ss_dssp HTT
T ss_pred HHh
Confidence 543
No 148
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=6.9e-22 Score=146.37 Aligned_cols=167 Identities=17% Similarity=0.127 Sum_probs=105.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC---ceeeeeeEEEEECCeEEEEEEEecCCCcC-----------ccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQED-----------YNR 70 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~ 70 (197)
...+||+++|++|||||||+++|++..+.....+ ++.......+..++ ..+++|||||... +..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999877554433 22333344556666 5678999999542 333
Q ss_pred ccccCcCCCcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177 71 LRPLSYRGADVFLLAFSLISKASYENIS-KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK 149 (197)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.....++.+|++++|+|+++....+... ..+...+... ...|+++|+||+|+...... . .... ...+.++.+.+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~--~-~~i~-~~~~~l~~l~~ 179 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNL--H-DYLR-EAPEDIQDLMD 179 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccH--H-HHHH-hchHHHHHHHH
Confidence 3444567899999999997654422110 2222222221 24699999999998764320 0 0000 01246778888
Q ss_pred HcCCcEEEEecccCC-----CCHHHHHHHHHHHHc
Q 029177 150 LIGAAVYIECSSKTQ-----QNVKTVFDAAIKVVL 179 (197)
Q Consensus 150 ~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~ 179 (197)
..+. .++.+++..+ .++.++|..+.+.+.
T Consensus 180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 8887 6777776643 689999998887764
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.87 E-value=1.7e-21 Score=158.58 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=83.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--CC---------------CCCC------CCceeeeeeEEEEECCeEEEEEEEec
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN--TF---------------PTDY------VPTVFDNFSANVVVDGSTVNLGLWDT 62 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~--~~---------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (197)
+..+|+++|++|+|||||+++|+.. .. ..++ ...+.......+...+ +.+++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 5679999999999999999999621 00 0000 0111111122334455 77889999
Q ss_pred CCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 63 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
||+.+|...+...++.+|++++|+|+++..+.... ..| ..+... ++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 99999999999999999999999999998777775 444 344433 7899999999999643
No 150
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=4.6e-22 Score=157.90 Aligned_cols=165 Identities=19% Similarity=0.168 Sum_probs=114.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC--------CCCCC----------CCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
....++|+++|++++|||||+++|.+. .+... ....+.+ .....++.....+.+|||||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~--~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN--TAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCS--CEEEEEECSSCEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEE--eeeeEeccCCeEEEEEECCCh
Confidence 446799999999999999999999873 11110 0011111 122233333367889999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHH
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQG 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
++|.......+..+|++++|+|+++...... ..++..+... ++| +++++||+|+.++... .....++.
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~-------~~~~~~~~ 154 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPEL-------LDLVEMEV 154 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHH-------HHHHHHHH
Confidence 9998888888899999999999998765444 3444555443 688 8999999999742210 00123456
Q ss_pred HHHHHHcCC----cEEEEecccCCCC------------------HHHHHHHHHHHHcCC
Q 029177 145 EELKKLIGA----AVYIECSSKTQQN------------------VKTVFDAAIKVVLQP 181 (197)
Q Consensus 145 ~~~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~~~~ 181 (197)
.++...++. .+++++||++|+| +.++++.+...+..+
T Consensus 155 ~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 155 RDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 677777763 5899999999987 788888888876543
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=2.7e-21 Score=154.78 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=103.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------------------------C-CCceeeeeeEEEEECC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------------------------Y-VPTVFDNFSANVVVDG 52 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----------------------------~-~~~~~~~~~~~~~~~~ 52 (197)
...++|+++|++++|||||+++|+.. .+... . ...+.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45789999999999999999999643 11110 0 1112222222333444
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCCCccc
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YE---NISKKWIPELRHYAPTVP-IVLVGTKQDLRE 125 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~ 125 (197)
..+.+||||||++|...+...++.+|++++|+|+++... ++ .. ...+..+.. .++| +++++||+|+..
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 688899999999999888888999999999999998642 11 11 112222222 2567 999999999954
Q ss_pred chhhhcCCCCCCCccHHHHHHHHHHcCC-----cEEEEecccCCCCHHHHHH
Q 029177 126 DKQYLINHPGATPITTAQGEELKKLIGA-----AVYIECSSKTQQNVKTVFD 172 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 172 (197)
.... ........++...+...++. .+++++||++|+|++++++
T Consensus 170 ~~~~----~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWS----NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchH----HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2100 00000223445556655553 4799999999999999654
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=1.4e-22 Score=162.13 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=104.6
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCCC------------------------------CCceeeeeeEEEE
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV 49 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~------------------------------~~~~~~~~~~~~~ 49 (197)
|+....++|+++|++++|||||+++|+.. .+.... ...+.+.....+.
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 34556799999999999999999999864 332110 1111111111222
Q ss_pred ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-----CCC-CEEEEeeCCCc
Q 029177 50 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTV-PIVLVGTKQDL 123 (197)
Q Consensus 50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~-p~iiv~nK~D~ 123 (197)
..+ ..+.+|||||+++|...+...++.+|++++|+|+++ .+|+.. ..|..+..++. .++ |+++++||+|+
T Consensus 81 ~~~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 81 TKK--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp CSS--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred cCC--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 333 678899999999999888889999999999999999 666643 22222211111 144 68999999999
Q ss_pred ccchhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHHH
Q 029177 124 REDKQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 171 (197)
.+... .........+++.+++..++. .+++++||++|+|+.+++
T Consensus 157 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 157 TEPPY----DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp SSSTT----CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred CCccc----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 76210 000000234567777777762 589999999999998554
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4e-22 Score=142.68 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=84.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCC---
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 78 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--- 78 (197)
.+.++|+++|++|||||||+++|.+..+... +.++.. .+...+.+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 4568999999999999999999999876431 122211 11133678899999999988877777765
Q ss_pred -CcEEEEEEECC-ChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCcccc
Q 029177 79 -ADVFLLAFSLI-SKASYENISKKWIPELRHY-----APTVPIVLVGTKQDLRED 126 (197)
Q Consensus 79 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~ 126 (197)
+|++++|||++ +++++... ..|+..+... .++.|+++|+||+|+.+.
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 89999888 4554444322 258999999999999764
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=3.7e-22 Score=150.72 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=90.6
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcCC-CCCCC-------CCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc---
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSNT-FPTDY-------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR--- 70 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~-~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--- 70 (197)
++...++|+++|.+|+|||||+|+|++.. +...+ .++. .+.....+..++..+.+++|||||..+...
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 34457999999999999999999987744 33333 2333 233333333455557999999999743211
Q ss_pred ----cc-------c-------------cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 71 ----LR-------P-------------LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 71 ----~~-------~-------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
.. . ..-..+|+++++++.+........ ..++..+.. ++|+++|+||+|+...
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~~~l~~l~~---~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE---KVNIIPLIAKADTLTP 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-HHHHHHHTT---TSCEEEEESSGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-HHHHHHHhc---cCCEEEEEeccCCCCH
Confidence 11 1 111347899999987663222221 345555554 7899999999998653
Q ss_pred hhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
... ....+...+.....+. +++.+||.+++|+++++.++.+.+
T Consensus 160 ~e~--------~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EEC--------QQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHH--------HHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred HHH--------HHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 320 0111334455556676 799999999999999999998865
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=2.8e-21 Score=159.20 Aligned_cols=168 Identities=16% Similarity=0.127 Sum_probs=106.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC----------------CeEEEEEEEecCCCcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------------GSTVNLGLWDTAGQED 67 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~D~~g~~~ 67 (197)
.+..+|+++|++++|||||+++|.+..+............ ...+..+ .....++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3567999999999999999999987644322110110000 0011100 0112588999999999
Q ss_pred cccccccCcCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC----CCCCCCcc
Q 029177 68 YNRLRPLSYRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN----HPGATPIT 140 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~----~~~~~~~~ 140 (197)
|...+...++.+|++++|||+++ +.+++.+ . .+.. .++|+++++||+|+......... +.......
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999999 6666554 2 2233 37899999999999642110000 00000000
Q ss_pred ------HH---HHHHHHHHc--------------CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 141 ------TA---QGEELKKLI--------------GAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 141 ------~~---~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+ +..+...+. +..+++.+||++|+|++++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00 111111111 2348999999999999999999998764
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=7.5e-21 Score=148.54 Aligned_cols=162 Identities=19% Similarity=0.126 Sum_probs=109.3
Q ss_pred EE-EEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcC---------cccccccCc
Q 029177 8 IK-CVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY 76 (197)
Q Consensus 8 ~k-i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 76 (197)
++ |+++|.+|+|||||+|+|.+..+.. .+..++.+.....+.+++ ..+.+|||+|... |...+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 44 9999999999999999999876532 333444555667778888 4678999999632 222222 46
Q ss_pred CCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-C
Q 029177 77 RGADVFLLAFSLISKA--SYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-G 152 (197)
Q Consensus 77 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 152 (197)
..+|++++|+|++++. ..... ..|...+.... .+.|+++|+||+|+..... .-..+.+..++..+ .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS 325 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence 7899999999999886 44444 55656655543 5789999999999864210 00112333344554 2
Q ss_pred -CcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 153 -AAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 153 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
.++++++||++++|+++++++|.+.+....
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 346899999999999999999998775433
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=6.7e-21 Score=151.44 Aligned_cols=165 Identities=17% Similarity=0.124 Sum_probs=110.5
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCCC--ceeeeee-EEEEE-------------C--C----eEEEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFS-ANVVV-------------D--G----STVNLG 58 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~~-~~~~~-------------~--~----~~~~~~ 58 (197)
....++|+++|+.++|||||+++|.+. .+..+..+ |....+. ..+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 345789999999999999999999853 22222222 2211111 11111 1 1 136889
Q ss_pred EEecCCCcCcccccccCcCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177 59 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP 134 (197)
Q Consensus 59 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 134 (197)
+||+|||++|.......+..+|++++|+|+++. .+.+.+ ..+ ... ...|+++++||+|+.+....
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~~-~~~~iivviNK~Dl~~~~~~----- 155 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL----QII-GQKNIIIAQNKIELVDKEKA----- 155 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH----HHH-TCCCEEEEEECGGGSCHHHH-----
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH----HHc-CCCcEEEEEECccCCCHHHH-----
Confidence 999999999887777778889999999999964 444443 222 221 23589999999999764320
Q ss_pred CCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177 135 GATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 182 (197)
....++..++.... ...+++++||++|+|+++++++|.+.+..+.
T Consensus 156 ---~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 156 ---LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp ---HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred ---HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 01223445555442 2358999999999999999999998776543
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=1.1e-21 Score=155.21 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=112.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-------CCCCC----------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~-------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 68 (197)
..+||+++|++++|||||+++|.+. .+... ....+.. .....++.....+.+|||||+++|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~--~~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN--AAHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEE--CEEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEE--eeeEEeccCCeEEEEEECCChHHH
Confidence 3589999999999999999999873 11100 0011111 111223333367889999999999
Q ss_pred ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177 69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEEL 147 (197)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
.......++.+|++++|+|+++....... ..| ..+... ++| +++++||+|+.++... .....+++.++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~-------~~~~~~~~~~~ 148 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSEM-------VELVELEIREL 148 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHHH-------HHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHHH-------HHHHHHHHHHH
Confidence 88888889999999999999996554443 333 344433 688 7899999999742210 00123566777
Q ss_pred HHHcCC----cEEEEecccCCCC----------HHHHHHHHHHHHcCC
Q 029177 148 KKLIGA----AVYIECSSKTQQN----------VKTVFDAAIKVVLQP 181 (197)
Q Consensus 148 ~~~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~~~ 181 (197)
...++. .+++++||++|.| +.++++.+.+.+..+
T Consensus 149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 777763 5899999999764 899999998877644
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=9e-22 Score=159.40 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=97.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CC-CCceeeeeeEEEEECC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----------------------------DY-VPTVFDNFSANVVVDG 52 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~-----------------------------~~-~~~~~~~~~~~~~~~~ 52 (197)
...+||+++|++++|||||+++|+.. .+.. +. ...+.+.....+ +.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~--~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE--EC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE--ec
Confidence 34699999999999999999999764 1110 00 011111112222 23
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN-----ISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
..+.+.||||||+++|...+...++.+|++++|+|+++..+... .....+..+.. ....|+++|+||+|+.+.+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTC
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccch
Confidence 33678899999999999888889999999999999999754321 10122222222 2235799999999997632
Q ss_pred hhhcCCCCCCCcc----HHHHHHHHHHcC----CcEEEEecccCCCCHHH
Q 029177 128 QYLINHPGATPIT----TAQGEELKKLIG----AAVYIECSSKTQQNVKT 169 (197)
Q Consensus 128 ~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 169 (197)
. .. .+++..+...++ ..+++++||++|+|+++
T Consensus 188 ~----------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 Q----------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp H----------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred H----------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1 22 233344444444 25899999999999874
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=1.4e-22 Score=163.17 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=100.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCC--------CcCcccccccC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLS 75 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~ 75 (197)
...+|+++|.+|||||||+|+|.+..+. ....+++.+.... ........+++||||| ++.+...+..+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~--~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEE--ECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEE--EEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3569999999999999999999986553 2223333333232 2333335788999999 55556666777
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177 76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV 155 (197)
Q Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
++++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+.+... ...++. ..+...
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~--------------~~~e~~-~lg~~~ 160 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGE 160 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCSG-GGSSSS
T ss_pred HhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh--------------hHHHHH-HcCCCc
Confidence 889999999999887554444 344455554 4899999999999864321 011111 223335
Q ss_pred EEEecccCCCCHHHHHHHHHHHHcC
Q 029177 156 YIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 156 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
.+++||++|.|+.++++++.+.+..
T Consensus 161 ~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 161 PYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred eEEeecccccchHHHHHHHHhhccc
Confidence 6799999999999999999987653
No 161
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=2e-22 Score=157.49 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=86.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-CCCCCCC--------Ccee-eeeeEEEEECCeEEEEEEEecCCC-------cCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVF-DNFSANVVVDGSTVNLGLWDTAGQ-------EDY 68 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~ 68 (197)
..++|+|+|++|+|||||+++|++. .+...+. ++.. ......+..++..+.+++|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999998764 3333322 2222 222222334566678999999998 556
Q ss_pred ccccc-------cCcCC-----------CcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177 69 NRLRP-------LSYRG-----------ADVFLLAFSLIS-KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY 129 (197)
Q Consensus 69 ~~~~~-------~~~~~-----------~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 129 (197)
..++. .+++. +++.+++|++++ ..++......|+..+. .++|+++|+||+|+.....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e- 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE- 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence 55554 33322 222234454444 4445554234544443 4799999999999976543
Q ss_pred hcCCCCCCCccH--HHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 130 LINHPGATPITT--AQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 130 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
+.. +++.+++..++. +++++||+++++ ++.|.++.+.+..
T Consensus 192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 333 566777777776 899999999998 8888777776644
No 162
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=4.9e-21 Score=142.49 Aligned_cols=166 Identities=14% Similarity=0.081 Sum_probs=104.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-C--ceeeeeeEEEEECCeEEEEEEEecCCCcC--------cccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-P--TVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRP 73 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 73 (197)
...+||+++|.+|||||||+|++++........ + ++..........++ ..+.+|||||... +.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 467999999999999999999999976543322 2 22233334455566 5778999999732 222222
Q ss_pred cC----cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177 74 LS----YRGADVFLLAFSLISKASYENISKKWIPELRHY----APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE 145 (197)
Q Consensus 74 ~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
.. .+.+|++++|+|+++....+ ..++..+... ..+.|+++++||.|+.+...... ......+..+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~----l~~~~~~~l~ 169 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDY----VSNTENRALR 169 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHH----HHHCCCHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHH----HhhcccHHHH
Confidence 22 38999999999998632222 2222333322 23689999999999965321000 0000114467
Q ss_pred HHHHHcCCcEEEEecccC-----CCCHHHHHHHHHHHHcC
Q 029177 146 ELKKLIGAAVYIECSSKT-----QQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 146 ~~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~i~~~~~~ 180 (197)
.+.+.++. .++.+++.. +.|+++++..|.+.+..
T Consensus 170 ~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 170 ELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 78888886 566666554 58999999999887753
No 163
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=8e-21 Score=146.19 Aligned_cols=127 Identities=16% Similarity=0.137 Sum_probs=95.4
Q ss_pred EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCC
Q 029177 54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENISKKWIPELRHYA-PTVPIVLVGTKQD 122 (197)
Q Consensus 54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D 122 (197)
.+.+++||++|++.++..|..++++++++|+|||++ +.+++.+....|...+.... +++|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 378999999999999999999999999999999999 77888888444444444333 6899999999999
Q ss_pred cccchhhh-----cCCCCCCCccHHHHHHHHHH-c-------------------------CCcEEEEecccCCCCHHHHH
Q 029177 123 LREDKQYL-----INHPGATPITTAQGEELKKL-I-------------------------GAAVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 123 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~Sa~~~~~i~~~~ 171 (197)
+.+..... ..+........+++.++... . ....++++||++..+++.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 97643211 01111112356666555432 2 23467899999999999999
Q ss_pred HHHHHHHcC
Q 029177 172 DAAIKVVLQ 180 (197)
Q Consensus 172 ~~i~~~~~~ 180 (197)
..+.+.+++
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=1.2e-20 Score=150.89 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=102.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CCCceeeee--------------------eEEEEECC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNF--------------------SANVVVDG 52 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~--~~~~----------~~~~~~~~~--------------------~~~~~~~~ 52 (197)
...++|+++|++++|||||+++|++.. +... ..+++...+ .....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 346899999999999999999998643 1111 111110000 00111222
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-CEEEEeeCCCcccchhhhc
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTV-PIVLVGTKQDLREDKQYLI 131 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~ 131 (197)
....+.+|||||+++|...+...+..+|++++|+|+++....... .++..+... +. |+++|+||+|+.+....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~-- 175 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER-- 175 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH--
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHH--
Confidence 236788999999999988888889999999999999987544432 333333332 44 59999999999752110
Q ss_pred CCCCCCCccHHHHHHHHHHcC----CcEEEEecccCCCCHHHH
Q 029177 132 NHPGATPITTAQGEELKKLIG----AAVYIECSSKTQQNVKTV 170 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~ 170 (197)
......++..++++.++ ..+++++||++|+|++++
T Consensus 176 ----~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 ----VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ----HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ----HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 00012355666777776 258999999999999874
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=5.2e-21 Score=153.87 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=104.7
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEE
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANV 48 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~ 48 (197)
|......++|+++|++++|||||+++|++. .+... ....+.+.....+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 445567899999999999999999999863 22110 0111111111223
Q ss_pred EECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---H----HHHHHHHHHHHhhhCCCCC-EEEEeeC
Q 029177 49 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y----ENISKKWIPELRHYAPTVP-IVLVGTK 120 (197)
Q Consensus 49 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~p-~iiv~nK 120 (197)
..++ ..+.+||||||++|.......+..+|++++|+|+++... | ... . .+..+.. .++| +++++||
T Consensus 81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~-~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-E-HALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-H-HHHHHHH--TTCCEEEEEEEC
T ss_pred ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-H-HHHHHHH--cCCCeEEEEEEc
Confidence 3334 678899999999999888888999999999999998632 2 222 2 2222332 2566 8999999
Q ss_pred CCcccchhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHH
Q 029177 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTV 170 (197)
Q Consensus 121 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 170 (197)
+|+.+.... ......++..++...++. .+++++||++|+|+.++
T Consensus 155 ~Dl~~~~~~------~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDES------RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHH------HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHH------HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999731100 000233456667777763 58999999999998743
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=5e-23 Score=165.96 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=106.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 83 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 83 (197)
.+..+|+++|++++|||||+++|.+..+.....+.+ .+.....+..++ ..++|||||||+.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 356789999999999999999998755443332222 111122223344 46789999999999999999999999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-CcEEEEe
Q 029177 84 LAFSLISK---ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-AAVYIEC 159 (197)
Q Consensus 84 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (197)
+|+|+++. .+.+.+ ..+.. .++|+++++||+|+.+............ . ..++..++ ..+++++
T Consensus 80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~-~-----~~~~~~~~~~~~~v~v 146 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQ-Y-----GILPEEWGGESQFVHV 146 (501)
T ss_dssp EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCC-C-----CCCTTCCSSSCEEEEC
T ss_pred EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHH-h-----hhhHHHhCCCccEEEE
Confidence 99999884 444333 22222 3789999999999975321101000000 0 00111222 3589999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 029177 160 SSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 160 Sa~~~~~i~~~~~~i~~~ 177 (197)
||++|+|++++|+++...
T Consensus 147 SAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 147 SAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CTTTCTTCTTHHHHTTTT
T ss_pred eeeeccCcchhhhhhhhh
Confidence 999999999999998764
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=5.3e-21 Score=149.74 Aligned_cols=147 Identities=13% Similarity=0.047 Sum_probs=103.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 88 (197)
+|+++|++++|||||+++|... ..+.+.....+..++ ..+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~-------giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK-------GTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE-------EEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC-------CEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 8999999999999999999811 111111112222333 568899999999998777777899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhCCCCCE-EEEee-CCCcccchhhhcCCCCCCCcc--HHHHHHHHHHcC--CcEEEE--ec
Q 029177 89 ISKASYENISKKWIPELRHYAPTVPI-VLVGT-KQDLREDKQYLINHPGATPIT--TAQGEELKKLIG--AAVYIE--CS 160 (197)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~--~S 160 (197)
++... ... ..++..+... ++|. ++++| |+|+ +... +. .++..++...++ ..++++ +|
T Consensus 93 ~~g~~-~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~----------~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 93 PQGLD-AHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA----------IDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp TTCCC-HHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH----------HHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CCCCc-HHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH----------HHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 54332 222 3444444443 6787 88999 9999 5322 22 245555655543 358999 99
Q ss_pred ccC---CCCHHHHHHHHHHHHcC
Q 029177 161 SKT---QQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 161 a~~---~~~i~~~~~~i~~~~~~ 180 (197)
|++ ++|++++++.|.+.+..
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhccc
Confidence 999 99999999999887643
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-20 Score=155.82 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=101.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------------------------CCceeeeeeEEEEECC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVDG 52 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 52 (197)
...+||+++|++|+|||||+++|++....... ...+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34789999999999999999999865221110 1122222223333444
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---H--HHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y--ENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
+.+.||||||+++|...+...++.+|++++|+|+++... + .......+..+... ...|+++|+||+|+.+..
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTC
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccchh
Confidence 678899999999999988899999999999999987421 0 00101112222221 224599999999997622
Q ss_pred hhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHH
Q 029177 128 QYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTV 170 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 170 (197)
.. ......+++..+....+. .+++++||++|+|+.++
T Consensus 322 ~~------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HH------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HH------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 10 000112344455555553 58999999999999875
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=1.2e-20 Score=162.62 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=112.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC-------CCCC--CCC-----Cce-eeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN-------TFPT--DYV-----PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYN 69 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~-------~~~~--~~~-----~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 69 (197)
...++|+++|++++|||||+++|.+. .+.. ... .+. .+.....+.++.....+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45799999999999999999999863 1100 000 000 01111112233334678899999999998
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELK 148 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
......++.+|++|+|+|+++....... .++..+... ++| +++++||+|+.++... .....+++.++.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~-------le~i~eEi~elL 442 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEEL-------LELVEMEVRELL 442 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhh-------HHHHHHHHHHHH
Confidence 8888889999999999999987544432 333444443 688 7899999999753210 001235667777
Q ss_pred HHcCC----cEEEEecccCC--------CCHHHHHHHHHHHHcCC
Q 029177 149 KLIGA----AVYIECSSKTQ--------QNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 149 ~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~~~ 181 (197)
..++. .+++++||++| +|+.++++.+...+..+
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 77763 58999999999 46899999998876543
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=3.5e-21 Score=155.23 Aligned_cols=159 Identities=18% Similarity=0.126 Sum_probs=90.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------C------CCCceeeeeeEEEEECC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------D------YVPTVFDNFSANVVVDG 52 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~------------------------~------~~~~~~~~~~~~~~~~~ 52 (197)
...++|+++|++++|||||+++|+. +.+.. + ....+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4578999999999999999999975 22210 0 00111111111233344
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChh---hHHHH--HHHHHHHHhhhCCCCC-EEEEeeCCCcccc
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SYENI--SKKWIPELRHYAPTVP-IVLVGTKQDLRED 126 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~ 126 (197)
..+.+||||||++|...+...++.+|++++|+|+++.. +|+.. ....+..+.. .++| +++++||+|+...
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSV 196 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTC
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCc
Confidence 67889999999999998888899999999999999863 22211 0111122222 2677 9999999999541
Q ss_pred hhhhcCCCCCCCccHHHHHHHHHHc-C-----CcEEEEecccCCCCHHHHH
Q 029177 127 KQYLINHPGATPITTAQGEELKKLI-G-----AAVYIECSSKTQQNVKTVF 171 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~i~~~~ 171 (197)
.. +........++..++...+ + ..+++++||++|+|+.+++
T Consensus 197 ~~----~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 197 QW----SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SS----CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cc----cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 10 0000002234566666665 3 3479999999999998755
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=5.5e-20 Score=133.28 Aligned_cols=164 Identities=13% Similarity=-0.003 Sum_probs=100.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCc----------ccccc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDY----------NRLRP 73 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~ 73 (197)
....+|+++|++|||||||++++.+..+.....++.... ....+.+++ .+.+||+||.... .....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 345799999999999999999999876433333333222 122223333 4679999997431 11112
Q ss_pred cCc---CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177 74 LSY---RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL 150 (197)
Q Consensus 74 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
.++ ..++++++++|++++.+.... .+...+.. .+.|+++++||+|+..... +....+.+..++..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGA--------RKAQLNMVREAVLA 168 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHGG
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCchh--------HHHHHHHHHHHHHh
Confidence 222 578999999999987665432 22222222 3689999999999865321 00123455666665
Q ss_pred cC-CcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 151 IG-AAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 151 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
.+ ..+.+++||+++.|++++++.+.+.+.....
T Consensus 169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp GCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred cCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 54 3477899999999999999999988755433
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=5.8e-21 Score=145.67 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=99.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC------CCCcee--------------------eee---------------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YVPTVF--------------------DNF--------------- 44 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~------~~~~~~--------------------~~~--------------- 44 (197)
...+|+|+|.+|||||||+|+|++..+.+. ..|+.. ...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999876422 112200 000
Q ss_pred ---------eEEEEEC-CeEEEEEEEecCCCcC-------------cccccccCcCCCcEEE-EEEECCChhhHHHHHHH
Q 029177 45 ---------SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFL-LAFSLISKASYENISKK 100 (197)
Q Consensus 45 ---------~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 100 (197)
...+.+. .....+.+|||||... +......+++.++.++ +|+|+++..+.... ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 0000000 0025788999999643 2334445677787666 79999876554443 23
Q ss_pred HHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH--HHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 101 WIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL--KKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 101 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
+...+.. .+.|+++|+||+|+.+... ...+..... ....+..+++++||++++|++++++++.+.
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 4455443 3789999999999975432 111111110 001133478899999999999999998874
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=8.4e-20 Score=136.96 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=84.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcC-----
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR----- 77 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~----- 77 (197)
.+.++|+++|++|+|||||+++|++... ...+.+++.......+..++ ..+++|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3579999999999999999999999764 33444444444455556666 57889999999887655444432
Q ss_pred ----CCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-C--CCCEEEEeeCCCccc
Q 029177 78 ----GADVFLLAFSLISKASYENISKKWIPELRHYA-P--TVPIVLVGTKQDLRE 125 (197)
Q Consensus 78 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~iiv~nK~D~~~ 125 (197)
++|++++|+|++... +......|+..+.... . ..|+++|+||+|+..
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999987754 3333245666666543 2 249999999999864
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=2.8e-19 Score=145.75 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=80.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC--------CCCcee-----------ee--eeEEEEECCeEEEEEEEe
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD--------YVPTVF-----------DN--FSANVVVDGSTVNLGLWD 61 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~--------~~~~~~-----------~~--~~~~~~~~~~~~~~~~~D 61 (197)
.+..+|+++|++|+|||||+++|+.. .+... ...+.. +. ....+...+ +.+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 35789999999999999999999863 11000 000000 00 111233344 6788999
Q ss_pred cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
|||+.+|.......++.+|++++|+|+++...... ..+...+.. .++|+++++||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 99999999888888999999999999998754333 233333333 37999999999998754
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=8.5e-21 Score=156.63 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=89.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------------------------CC-CceeeeeeEEEEECC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------------------------YV-PTVFDNFSANVVVDG 52 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----------------------------~~-~~~~~~~~~~~~~~~ 52 (197)
...++|+++|++++|||||+++|+.. .+... .. .++.+.....+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-- 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-- 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence 35789999999999999999999641 11000 00 1111111112222
Q ss_pred eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhCCCCC-EEEEeeCC
Q 029177 53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENISKKWIPELRHYAPTVP-IVLVGTKQ 121 (197)
Q Consensus 53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 121 (197)
....+.|||||||++|.......+..+|++|+|+|+++. .+.+.+ ..+... ++| +++|+||+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKi 325 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKL 325 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEecc
Confidence 236788999999999999888899999999999999864 222222 222222 565 99999999
Q ss_pred CcccchhhhcCCCCCCCccHHHHHHHH-HHcCC----cEEEEecccCCCCHH--------------HHHHHHHHHH
Q 029177 122 DLREDKQYLINHPGATPITTAQGEELK-KLIGA----AVYIECSSKTQQNVK--------------TVFDAAIKVV 178 (197)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~--------------~~~~~i~~~~ 178 (197)
|+.+.... .......+...+. ...+. .+++++||++|+|+. .+++.|....
T Consensus 326 Dl~~~~~~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 326 DLMSWSED------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp GGGTTCHH------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccccccHH------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 99752110 0001123344444 44454 379999999999998 6777776544
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=2.7e-19 Score=149.61 Aligned_cols=116 Identities=18% Similarity=0.050 Sum_probs=81.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----------------eeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-----------------VFDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
.+..+|+++|+.|+|||||+++|.+........++ ..+.......+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45678999999999999999999853221110000 0111122222222347888999999999
Q ss_pred cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
|...+..+++.+|++++|+|+++....... .++..+... ++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 988888889999999999999887655443 344444443 79999999999986
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=1.2e-18 Score=146.17 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=83.9
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----C------------CCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----D------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 65 (197)
.+..+|+++|++|+|||||+++|+. +.+.. . ....+.......+...+ +.+++|||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence 5688999999999999999999984 21100 0 00111111122333444 67889999999
Q ss_pred cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
.+|...+...++.+|++++|+|+++..+.... ..|.. +... ++|+++|+||+|+...
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence 99998888899999999999999998887776 55544 3333 7999999999998754
No 178
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=4.9e-20 Score=140.79 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=109.6
Q ss_pred HHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-hHHHHHH
Q 029177 22 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISK 99 (197)
Q Consensus 22 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 99 (197)
+|+.++..+.|. ..+.||..+.+...+..++ .+++||+ +++|+.+++.+++++|++++|||++++. ++..+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 688888888898 7888888766654432222 6789999 8999999999999999999999999997 67777 8
Q ss_pred HHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-cEEEEecccCCCCHHHHHHHHHH
Q 029177 100 KWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-AVYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 100 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
.|+..+.. .++|+++|+||+|+.+... + +++.+++..++. .+++++||++|+|++++|..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 88887765 3899999999999976432 2 456677777762 38999999999999999988754
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=5.3e-19 Score=148.47 Aligned_cols=170 Identities=12% Similarity=0.159 Sum_probs=107.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee----eee----eEEEEE-CCe----------------------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF----DNF----SANVVV-DGS---------------------- 53 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~----~~~----~~~~~~-~~~---------------------- 53 (197)
..++|+|+|.+|+|||||+|+|++..+. ....+++. ..+ ..++.+ ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999987642 23333331 000 001111 000
Q ss_pred -----------------------E--EEEEEEecCCCcC---cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 029177 54 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL 105 (197)
Q Consensus 54 -----------------------~--~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 105 (197)
. ..+.+|||||... .......+++.+|++++|+|++++.+..+. ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0 2478999999654 233445667899999999999998887776 5555555
Q ss_pred hhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCc--cHHHHHH-----HHHHcC-------CcEEEEeccc---------
Q 029177 106 RHYAPTVPIVLVGTKQDLREDKQYLINHPGATPI--TTAQGEE-----LKKLIG-------AAVYIECSSK--------- 162 (197)
Q Consensus 106 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~-------~~~~~~~Sa~--------- 162 (197)
... +.|+++|+||+|+...... ........ ..+.... +....+ ..+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~--~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLI--DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCS--STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred Hhh--CCCEEEEEECccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 433 6789999999999754310 00000000 0001111 111111 2368999999
Q ss_pred -----CCCCHHHHHHHHHHHHcC
Q 029177 163 -----TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 -----~~~~i~~~~~~i~~~~~~ 180 (197)
++.|+++++..+.+.+..
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887653
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=1.4e-18 Score=130.84 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=81.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc---------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL--------- 74 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~--------- 74 (197)
..++|+++|.+|+|||||+|+|++..+. ....+++.......+...+ ..+.+|||||+.++......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4799999999999999999999987652 2233333333333334444 67889999999776533221
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC-C--CCEEEEeeCCCcccch
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-T--VPIVLVGTKQDLREDK 127 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~iiv~nK~D~~~~~ 127 (197)
....+|++++|+|++.. ++......|+..+..... + .|+++|+||+|+....
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 23479999999998764 343332456666655432 2 6999999999997543
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=7.5e-20 Score=139.68 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=86.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-CCCCCCC--------Ccee-eeeeEEEEECCeEEEEEEEecCCC-------cCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVF-DNFSANVVVDGSTVNLGLWDTAGQ-------EDY 68 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~ 68 (197)
-.++|+++|++|+|||||++++++. .++..+. ++.. ..........+....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999998874 4443321 1111 111111222344578899999998 444
Q ss_pred ccccc-------cCcC-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh
Q 029177 69 NRLRP-------LSYR-------------GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128 (197)
Q Consensus 69 ~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 128 (197)
..... .+++ .+++++++.+.+. .+++.... ..+....++.|+++|+||.|+.....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 44332 2221 2344555555432 23434312 23333334689999999999976432
Q ss_pred hhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 129 YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
. ....+++.++++.++. +++++||+++ |++++|.++.+.+...
T Consensus 173 ~--------~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 R--------ERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp H--------HHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred H--------HHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence 0 1234677888999986 8999999999 9999999999988654
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.78 E-value=4.6e-18 Score=142.76 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=84.7
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CC------CCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DY------VPTVFDNFSANVVVDGSTVNLGLWDTAG 64 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g 64 (197)
..+..+|+++|++|+|||||+++|+. +.+.. ++ ...+.......+..++ +.+.+|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 35678999999999999999999985 32210 00 0111111122334444 6788999999
Q ss_pred CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
+.+|...+...++.+|++++|+|+++..+.... ..|.. +... ++|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHHc--CCCEEEEEECCCcccc
Confidence 999988888889999999999999998777765 44543 4433 7899999999998754
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=8.6e-18 Score=141.27 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=83.6
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------C------CCceeeeeeEEEEEC-----CeEEEEEE
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------Y------VPTVFDNFSANVVVD-----GSTVNLGL 59 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----------~------~~~~~~~~~~~~~~~-----~~~~~~~~ 59 (197)
..+..+|+++|+.|+|||||+++|+.. .+... + ...+.......+.+. +..+.+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 356789999999999999999999752 22110 0 000111111122222 23478999
Q ss_pred EecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 60 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 60 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
|||||+.+|...+...++.+|++++|+|+++..+.... ..|.. +.. .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQ-ANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEeCCCcccc
Confidence 99999999998888899999999999999988766554 44433 332 27999999999998754
No 184
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.77 E-value=4.3e-18 Score=132.69 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=90.4
Q ss_pred EEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCE
Q 029177 47 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENISKKWIPELRHY--APTVPI 114 (197)
Q Consensus 47 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ 114 (197)
.+.+++ +.+++||++|++.++..|..++++++++|+|||+++ ..++... ..|+..+... ..++|+
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEE
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCE
Confidence 344554 789999999999999999999999999999999999 6788888 4455544432 368999
Q ss_pred EEEeeCCCcccchhhh------cCCCCCCCccHHHHHHHHH-----------HcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 115 VLVGTKQDLREDKQYL------INHPGATPITTAQGEELKK-----------LIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 115 iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
++++||+|+.+..... ..+.....+..+++..++. ..+ ..+++|||++++|++++|+++.+.
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHH
Confidence 9999999997543100 0111111256777777762 223 478999999999999999999988
Q ss_pred HcC
Q 029177 178 VLQ 180 (197)
Q Consensus 178 ~~~ 180 (197)
+.+
T Consensus 351 i~~ 353 (362)
T 1zcb_A 351 ILH 353 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=4.2e-18 Score=134.74 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=106.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----ccccc---CcCCCc
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPL---SYRGAD 80 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~~ 80 (197)
.|+++|++|||||||++++.+... ...+..++.......+..++ ...+.+||+||..... .+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 479999999999999999988632 12233333222223344443 2467899999975321 12111 235799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177 81 VFLLAFSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI 157 (197)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
.+++++|++ ...+..+ ..+...+.... .+.|.++++||+|+... . ..+...+.....+. +++
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi 302 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL 302 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence 999999998 5556665 45555544433 35799999999999653 1 12333444444554 799
Q ss_pred EecccCCCCHHHHHHHHHHHHcCCCC
Q 029177 158 ECSSKTQQNVKTVFDAAIKVVLQPPK 183 (197)
Q Consensus 158 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 183 (197)
.+||++++|++++++++.+.+...+.
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEECCCccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999998876554
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=135.96 Aligned_cols=158 Identities=14% Similarity=0.128 Sum_probs=83.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-C-------CCcee-eeeeEEEEECCeEEEEEEEecCCCcCccc-------
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-Y-------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNR------- 70 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~-~-------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------- 70 (197)
.++|+|+|++|+|||||+++|++..+... + .++.. ......+...+....+++||++|...+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 57899999999999999999998765322 1 11111 11111111233335789999999765311
Q ss_pred ------------------ccccCcCCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhc
Q 029177 71 ------------------LRPLSYRGADVFLLAFSLISK-ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLI 131 (197)
Q Consensus 71 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 131 (197)
+...++.++++.+++|+...- .++......|+..+. .++|+|+|+||+|+.....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e--- 184 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE--- 184 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH---
Confidence 123345666665666655543 344444235666665 3789999999999976543
Q ss_pred CCCCCCCccH--HHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 132 NHPGATPITT--AQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 132 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
+.. +.+.+++..++. +++++|+++++++.++|..+...+
T Consensus 185 -------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp -------HHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred -------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 433 667788888886 899999999999999988887754
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=3.4e-19 Score=136.91 Aligned_cols=113 Identities=15% Similarity=0.100 Sum_probs=68.0
Q ss_pred EEEEEEecCCCcC-------------cccccccCcCCCcEEEEEEECCChhhH-HHHHHHHHHHHhhhCCCCCEEEEeeC
Q 029177 55 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFLLAFSLISKASY-ENISKKWIPELRHYAPTVPIVLVGTK 120 (197)
Q Consensus 55 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK 120 (197)
..+.+|||||... +......++..+|++++|+|.++.... ... ..+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence 4688999999754 233445567899999999998543211 111 123344433 37899999999
Q ss_pred CCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE---ecccC---CCCHHHHHHHHHHHHcCC
Q 029177 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE---CSSKT---QQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 121 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Sa~~---~~~i~~~~~~i~~~~~~~ 181 (197)
+|+..... ...+.........+ .++++ +|+.+ +.|+.+++..+...+...
T Consensus 208 ~Dl~~~~~----------~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 208 LDLMDKGT----------DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TTSSCSSC----------CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cccCCcch----------HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99975321 11111111001111 24454 55555 799999999998877543
No 188
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.75 E-value=1.8e-17 Score=130.21 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=97.1
Q ss_pred EEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCE
Q 029177 47 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENISKKWIPELRHY--APTVPI 114 (197)
Q Consensus 47 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ 114 (197)
.+.+++ +.+++||++|++.++..|..++++++++|+|||+++ .++++.. ..|+..+... .+++|+
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeE
Confidence 344555 889999999999999999999999999999999999 8899998 6676666554 368999
Q ss_pred EEEeeCCCcccchhhhcC--------CCC------------CCCccHHHHHHHH-----HHc-------CCcEEEEeccc
Q 029177 115 VLVGTKQDLREDKQYLIN--------HPG------------ATPITTAQGEELK-----KLI-------GAAVYIECSSK 162 (197)
Q Consensus 115 iiv~nK~D~~~~~~~~~~--------~~~------------~~~~~~~~~~~~~-----~~~-------~~~~~~~~Sa~ 162 (197)
+||+||+|+.+....... +.. ......+++..++ +.. ....+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 999999999654321000 000 0001245666663 221 23467899999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029177 163 TQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 163 ~~~~i~~~~~~i~~~~~~ 180 (197)
+++||+++|.++.+.+..
T Consensus 368 d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999999999887753
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=4.9e-19 Score=138.51 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=97.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeE----------------------------------------
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSA---------------------------------------- 46 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~---------------------------------------- 46 (197)
-+|+|+|++|||||||+++|.+..+.+....+.. .....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3899999999999999999999776333222110 00000
Q ss_pred ------------EEEE-CCeEEEEEEEecCCCcCc-------------ccccccCcCCCcEEEEEEECCChhhHHHHHHH
Q 029177 47 ------------NVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFLLAFSLISKASYENISKK 100 (197)
Q Consensus 47 ------------~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 100 (197)
.+.+ ......+++|||||...+ ......++.++|++++++|.++.+.... .
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~ 191 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---D 191 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---H
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---H
Confidence 0000 001135789999998776 3345566789999999998866543322 2
Q ss_pred HHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHH
Q 029177 101 WIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173 (197)
Q Consensus 101 ~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 173 (197)
|+..+.... .+.|+++|+||+|+..... ...+.+..+...++. +++.+|+..+.++++.+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence 333333332 3689999999999976432 333334444445554 7899999998888766544
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=1.7e-17 Score=130.85 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=47.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEE---------------------EECC-eEEEEEEEecCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANV---------------------VVDG-STVNLGLWDTAG 64 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~D~~g 64 (197)
++|+++|.+|||||||+|+|.+.... ..+..++........ .+++ ..+.++||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 233333322211111 1233 247899999999
Q ss_pred CcCc----ccccc---cCcCCCcEEEEEEECCCh
Q 029177 65 QEDY----NRLRP---LSYRGADVFLLAFSLISK 91 (197)
Q Consensus 65 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 91 (197)
.... ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8542 22222 457899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.72 E-value=2.9e-17 Score=119.91 Aligned_cols=155 Identities=17% Similarity=0.071 Sum_probs=96.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eee-----------e-EEEEECC------------------eE
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNF-----------S-ANVVVDG------------------ST 54 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~-----------~-~~~~~~~------------------~~ 54 (197)
+..+|+++|.+|||||||+++|.............. +.. . ....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999987522111000000 000 0 0011111 12
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP 134 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 134 (197)
+.+.+|||+|+...... +...++.+++|+|+++...... .+.... +.|+++|+||+|+.+...
T Consensus 109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVVE---KHPEIF-----RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHHH---HCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhhh---hhhhhh-----hcCCEEEEecccCCcchh------
Confidence 46779999995221111 1125688999999887643211 111211 478999999999975432
Q ss_pred CCCCccHHHHHHHHHHcC-CcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177 135 GATPITTAQGEELKKLIG-AAVYIECSSKTQQNVKTVFDAAIKVVLQP 181 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 181 (197)
...++..++.+..+ ..+++++||++|+|++++++++.+.+...
T Consensus 172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 34555666665543 35899999999999999999999987544
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=4.4e-16 Score=120.88 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=56.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeE---------------EEEEEEecCCCcCcc--
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYN-- 69 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~-- 69 (197)
++|+++|.||||||||+|+|.+.... ..+..++.......+.+++.. ..+++||+||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987642 233333333223334444421 468899999998753
Q ss_pred --ccccc---CcCCCcEEEEEEECCC
Q 029177 70 --RLRPL---SYRGADVFLLAFSLIS 90 (197)
Q Consensus 70 --~~~~~---~~~~~~~~i~v~d~~~ 90 (197)
.+... .++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23222 3689999999999986
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.70 E-value=1.9e-16 Score=129.66 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=82.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc--C----------------CCCC---CCCCceeeee--eEEEEECCeEEEEEEEec
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS--N----------------TFPT---DYVPTVFDNF--SANVVVDGSTVNLGLWDT 62 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~--~----------------~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~D~ 62 (197)
+.=+|+|+|+.++|||||..+|+. + .+.+ .......+.. ...+.+++ +.++++||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 455799999999999999999962 1 1111 0001111111 22344455 77889999
Q ss_pred CCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 63 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
|||.+|.......++-+|++++|+|+...-..... ..|... ..+ ++|.++++||+|....
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a-~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVC-RMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHH-HHT--TCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHH-HHh--CCceEEEEecccchhc
Confidence 99999999999999999999999999998776665 556444 333 7999999999998654
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.69 E-value=4e-18 Score=124.84 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=92.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-------------EEEEEC-CeE-----------------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-------------ANVVVD-GST----------------- 54 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~----------------- 54 (197)
+..+|+++|.+|||||||+++|....+...+.++....+. ..+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5689999999999999999999987654433344322211 222221 111
Q ss_pred --EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC
Q 029177 55 --VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN 132 (197)
Q Consensus 55 --~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 132 (197)
..+.+.|++|.-.... .+-...+..+.++|..+....... +...+ +.|.++|+||+|+.+...
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-----~~~~iiv~NK~Dl~~~~~---- 181 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK---HPGIM-----KTADLIVINKIDLADAVG---- 181 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT---CHHHH-----TTCSEEEEECGGGHHHHT----
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh---hhhHh-----hcCCEEEEeccccCchhH----
Confidence 1344566666311100 011123445667775332211110 01111 468899999999976432
Q ss_pred CCCCCCccHHHHHHHHHHcC-CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 133 HPGATPITTAQGEELKKLIG-AAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
...+++.++++..+ ..+++++||++|+|++++|+++.+.+.
T Consensus 182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 45566677766653 358999999999999999999988764
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=5.7e-17 Score=138.66 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=86.2
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhcC--C----------CCCC----CCC--ceee-eeeEEEE------------EC
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTSN--T----------FPTD----YVP--TVFD-NFSANVV------------VD 51 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~~--~----------~~~~----~~~--~~~~-~~~~~~~------------~~ 51 (197)
+..+..||+|+|++|+|||||+++|+.. . +.+. ... |... ....... .+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 4456789999999999999999999863 1 1110 000 1111 0111111 13
Q ss_pred CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 52 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 52 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
+..+.+++|||||+.+|...+..+++.+|++++|||+++..++... ..|..... .++|+++++||+|+..
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 4468899999999999999999999999999999999999888776 55654443 2789999999999874
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.68 E-value=4.8e-18 Score=132.53 Aligned_cols=158 Identities=20% Similarity=0.160 Sum_probs=91.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC------CCcee--------------------eee---------------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVF--------------------DNF--------------- 44 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~------~~~~~--------------------~~~--------------- 44 (197)
...+|+|+|.+|||||||+|+|++..+.+.. .|+.. ..+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3569999999999999999999998764222 12200 000
Q ss_pred ---------eEEEEECC-eEEEEEEEecCCCcC-------------cccccccCcCCCc-EEEEEEECCChhhHHHHHHH
Q 029177 45 ---------SANVVVDG-STVNLGLWDTAGQED-------------YNRLRPLSYRGAD-VFLLAFSLISKASYENISKK 100 (197)
Q Consensus 45 ---------~~~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~ 100 (197)
...+.+.+ ....+.||||||... +......++..++ +++++.|.+....-... ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 00011110 125688999999643 2223444555555 45556665543221121 12
Q ss_pred HHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH--HHHHHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177 101 WIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE--ELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 101 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
+...+.. .+.|+++|+||+|+.+... ...+... .+....+..+++.+||+++.|++++++++.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3344333 3789999999999975321 0111111 0111123446788999999999999999876
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.67 E-value=8.7e-17 Score=125.49 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=69.1
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP 134 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 134 (197)
+.+.||||||... .....+..+|++++|+|.+..+....+ . ....+.|+++|+||+|+.....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------ 234 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------ 234 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence 5788999999533 122335889999999998776544332 1 1112469999999999965322
Q ss_pred CCCCccHHHHHHHHHH---cC------CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 135 GATPITTAQGEELKKL---IG------AAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~~---~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
. .....++... .+ ..+++.+||++|+|++++++++.+.+.
T Consensus 235 ----~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 235 ----A-RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp ----H-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1 1111222222 11 248999999999999999999998764
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=2.3e-16 Score=129.29 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=78.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeeeeE------EEEEC-----------------------Ce
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSA------NVVVD-----------------------GS 53 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~------~~~~~-----------------------~~ 53 (197)
...+|+|+|.+|+|||||+|+|++..+. ....+++...... .+..+ +.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4689999999999999999999998763 2223332110000 00000 00
Q ss_pred E---------EEEEEEecCCCcC-----------cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC
Q 029177 54 T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP 113 (197)
Q Consensus 54 ~---------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 113 (197)
. ..+.||||||... |......++..+|++++|+|+++....... ..|+..+... +.|
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~p 220 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDK 220 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCC
Confidence 0 2578999999864 233444567789999999999886444444 4566665543 679
Q ss_pred EEEEeeCCCcccc
Q 029177 114 IVLVGTKQDLRED 126 (197)
Q Consensus 114 ~iiv~nK~D~~~~ 126 (197)
+++|+||+|+...
T Consensus 221 vilVlNK~Dl~~~ 233 (550)
T 2qpt_A 221 IRVVLNKADMVET 233 (550)
T ss_dssp EEEEEECGGGSCH
T ss_pred EEEEEECCCccCH
Confidence 9999999999754
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=9.3e-15 Score=114.00 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=54.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECC-------------------eEEEEEEEecCCCcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG-------------------STVNLGLWDTAGQED 67 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~~ 67 (197)
++|+++|.||||||||+++|.+... ..++..++.........+.+ ....+++||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997532 22333332211111122221 235788999999876
Q ss_pred cccc----cc---cCcCCCcEEEEEEECCC
Q 029177 68 YNRL----RP---LSYRGADVFLLAFSLIS 90 (197)
Q Consensus 68 ~~~~----~~---~~~~~~~~~i~v~d~~~ 90 (197)
+.+. .. ..++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 5422 11 23689999999999986
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=2.7e-16 Score=122.27 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=61.8
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP 134 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 134 (197)
+.+.++||+|.... .......+|++++|+|+++....... .. .+ -..|.++|+||+|+.+...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence 56789999995321 22346789999999999876433222 11 11 1468899999999964321
Q ss_pred CCCCccHHHHHHHHHH---------cCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 135 GATPITTAQGEELKKL---------IGAAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
. ......+... ...++++.+||++++|+++++++|.+.+
T Consensus 230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 0111222211 1134789999999999999999998865
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.59 E-value=1.4e-15 Score=113.66 Aligned_cols=120 Identities=11% Similarity=-0.054 Sum_probs=68.9
Q ss_pred EEEEEEecCCCcCcccccc------cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHh-hhCCCCCEEEEeeCCCcccch
Q 029177 55 VNLGLWDTAGQEDYNRLRP------LSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~ 127 (197)
+.+.+|||||+........ ..+.. +++++++|.....+.......+..... ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5788999999876543221 13455 888889987654333332111111111 111268999999999987543
Q ss_pred hhhcCCCCCCCc-cHHHH------------------HHHHHHcCC-cEEEEecccCCCCHHHHHHHHHHHH
Q 029177 128 QYLINHPGATPI-TTAQG------------------EELKKLIGA-AVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
....... .+ ..+.. .+++..++. .+++++||++++|++++++++.+.+
T Consensus 188 ~~~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRK---YFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHH---HHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHH---HHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 1000000 00 00000 011234443 3789999999999999999998865
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.58 E-value=1.8e-15 Score=117.38 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=65.5
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP 134 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 134 (197)
+.+.+|||||....... ....+|++++|+|++..+.+..+ .. .. .+.|.++|+||+|+.+...
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~~~~------ 211 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDNHTN------ 211 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTCHHH------
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCChHH------
Confidence 57889999997654322 45889999999999765432211 10 00 1358899999999965321
Q ss_pred CCCCccH--HHHHHHHHHcC------CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 135 GATPITT--AQGEELKKLIG------AAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 135 ~~~~~~~--~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
... ++........+ ..+++.+||++|+|++++++++.+.+.
T Consensus 212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111 12222222222 347899999999999999999988653
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.57 E-value=8.9e-16 Score=127.92 Aligned_cols=171 Identities=12% Similarity=0.018 Sum_probs=109.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCCCce----eeeeeEEEEECCeEEEEEEEecCCCcCccc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DYVPTV----FDNFSANVVVDGSTVNLGLWDTAGQEDYNR 70 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~--~~~~~-----------~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 70 (197)
-+|+|+|+.++|||||..+|+. +.... ++.+.. .+..+..+.+....+.++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999874 22211 000000 011111122223336788999999999999
Q ss_pred ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--------cCC-C-------
Q 029177 71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--------INH-P------- 134 (197)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--------~~~-~------- 134 (197)
.....++-+|++++|+|+...-..... ..|...... ++|.++++||+|....+... ... .
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 999999999999999999987665554 455444433 68999999999976543111 000 0
Q ss_pred ------CCCCccHHH-----------------------------HHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 135 ------GATPITTAQ-----------------------------GEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 135 ------~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.......+. ...........|++..||+++.|++.+++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence 000000000 011112234568899999999999999999998776
Q ss_pred CCC
Q 029177 180 QPP 182 (197)
Q Consensus 180 ~~~ 182 (197)
.+.
T Consensus 239 ~p~ 241 (638)
T 3j25_A 239 SST 241 (638)
T ss_dssp CSG
T ss_pred Ccc
Confidence 543
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.5e-14 Score=108.93 Aligned_cols=142 Identities=14% Similarity=0.097 Sum_probs=90.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-------cccCcCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRG 78 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~ 78 (197)
..+|++||.||||||||+|+|++... ..++..++.+.....+.+++ ..++++|+||...-.+. ....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999998543 45566677777777778888 57789999996432221 1123578
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177 79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG 152 (197)
Q Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+|++++|+|++++..-......-+..........|.+++.||.|...-.. ...........++...+...+.
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTT
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhc
Confidence 99999999999874322221222222222224678889999999754221 0011112245556666655554
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=1.9e-13 Score=115.25 Aligned_cols=116 Identities=17% Similarity=0.094 Sum_probs=80.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--------C------CCCC---CCCceeeeee--EEEEECC-----eEEEEEEEe
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN--------T------FPTD---YVPTVFDNFS--ANVVVDG-----STVNLGLWD 61 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~--------~------~~~~---~~~~~~~~~~--~~~~~~~-----~~~~~~~~D 61 (197)
+.=+|+|+|+.++|||||..+|+.. . +.+. ......+..+ ..+.+.+ ..+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4557999999999999999998731 1 1000 0000011111 1222221 357899999
Q ss_pred cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125 (197)
Q Consensus 62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 125 (197)
||||.+|.......++-+|++++|+|+...-..... ..|.+.... ++|.++++||+|...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence 999999999999999999999999999988766665 455555444 799999999999764
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.52 E-value=1.7e-14 Score=121.16 Aligned_cols=157 Identities=18% Similarity=0.091 Sum_probs=95.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeee-----------------------------------------
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF----------------------------------------- 44 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~----------------------------------------- 44 (197)
.-+|+|+|.+++|||||+|+|++..+.+ ....++....
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 4589999999999999999999976622 2111110000
Q ss_pred ----------eEEEEECCeEEEEEEEecCCCcCcc-------------cccccC-cCCCcEEEEEEECCChhhHHHHHHH
Q 029177 45 ----------SANVVVDGSTVNLGLWDTAGQEDYN-------------RLRPLS-YRGADVFLLAFSLISKASYENISKK 100 (197)
Q Consensus 45 ----------~~~~~~~~~~~~~~~~D~~g~~~~~-------------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~ 100 (197)
...+...+ ...+.|+||||-.... .....+ ...+|++++|+|+++...-.+. ..
T Consensus 131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~ 208 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 208 (772)
T ss_dssp STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence 00011111 1247799999964311 111122 2578999999999875443332 23
Q ss_pred HHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH--HHHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 101 WIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE--LKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 101 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
++..+... +.|+++|+||+|+..... ........ +....+..+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 44555443 789999999999976432 11111100 0001244467889999999999999998873
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.50 E-value=1.4e-13 Score=104.95 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=79.6
Q ss_pred CcCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc-HH
Q 029177 65 QEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT-TA 142 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~ 142 (197)
++++..+.+.++.++|++++|+|++++. ++..+ ..|+..+.. .++|+++|+||+|+.++.. +. .+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~~----------v~~~~ 132 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEEE----------KKELE 132 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCccc----------cHHHH
Confidence 6778888888999999999999999986 78776 788877765 3899999999999975432 22 34
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177 143 QGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176 (197)
Q Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 176 (197)
+..++.+..+. +++++||++|+|+++++..+..
T Consensus 133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence 55666667776 8999999999999999987653
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=98.02 Aligned_cols=106 Identities=7% Similarity=-0.043 Sum_probs=69.4
Q ss_pred cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHH---HHHHhhhC--CCCCEEEEeeCC-CcccchhhhcCCCC
Q 029177 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKW---IPELRHYA--PTVPIVLVGTKQ-DLREDKQYLINHPG 135 (197)
Q Consensus 62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~--~~~p~iiv~nK~-D~~~~~~~~~~~~~ 135 (197)
.+||..++..|.+|++++|++|||+|.+|++.++ ....+ ...+.... .+.|++|++||. |+.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--------- 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---------
Confidence 3488899999999999999999999999986554 32333 23333332 578999999995 67543
Q ss_pred CCCccHHHHHHH---HHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 136 ATPITTAQGEEL---KKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 136 ~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++..+..+. ......+.+..|||.+|+|+.+.++|+.+.+..
T Consensus 179 ---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 179 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred ---CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 344333222 111234567889999999999999999987643
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=2.8e-13 Score=104.85 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=62.5
Q ss_pred EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177 55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP 134 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 134 (197)
+.+.|+||+|...-. ......+|.+++++|.+..+....+ .. .+. ..|.++++||+|+.....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~---~i~----~~~~ivvlNK~Dl~~~~~------ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KK---GIF----ELADMIAVNKADDGDGER------ 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CT---THH----HHCSEEEEECCSTTCCHH------
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HH---HHh----ccccEEEEEchhccCchh------
Confidence 577899999975321 1234689999999998754322111 10 011 236677789999753221
Q ss_pred CCCCccHHHHHHHHHHc---C------CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177 135 GATPITTAQGEELKKLI---G------AAVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
......+.+.... . .++++.+||++++|++++++.|.+..
T Consensus 211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2222223332211 1 34788999999999999999998865
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=103.05 Aligned_cols=88 Identities=17% Similarity=0.078 Sum_probs=50.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCe---------------EEEEEEEecCCCcCcc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 69 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~ 69 (197)
..++|+++|.+|||||||+|+|.+..+.... ..++.......+.+.+. ...+++||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3578999999999999999999987553332 22333333344444432 2358999999987654
Q ss_pred c-------ccccCcCCCcEEEEEEECCChhh
Q 029177 70 R-------LRPLSYRGADVFLLAFSLISKAS 93 (197)
Q Consensus 70 ~-------~~~~~~~~~~~~i~v~d~~~~~s 93 (197)
+ .+...++++|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 4 23445789999999999986543
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.29 E-value=4.1e-12 Score=94.74 Aligned_cols=106 Identities=8% Similarity=-0.054 Sum_probs=74.3
Q ss_pred cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHH---HHHHHhhh--CCCCCEEEEeeC-CCcccchhhhcCCCC
Q 029177 62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKK---WIPELRHY--APTVPIVLVGTK-QDLREDKQYLINHPG 135 (197)
Q Consensus 62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~--~~~~p~iiv~nK-~D~~~~~~~~~~~~~ 135 (197)
.+||...+..|..++++.|++|||+|.+|++.++.. .. +...+... ..+.|++|++|| .|+.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak-~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------- 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQ-DEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHH-HHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHH-HHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence 468899999999999999999999999999765422 22 22334332 358999999996 688543
Q ss_pred CCCccHHHHHHH---HHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177 136 ATPITTAQGEEL---KKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 136 ~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 180 (197)
++..+..+. ......+.+..|||.+|+|+.|.++|+.+.+..
T Consensus 264 ---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 264 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred ---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 343333222 111234467789999999999999999998743
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.26 E-value=1.6e-10 Score=90.75 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=58.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCceeeeeeEEEEECCe-------------E--EEEEEEecCCCcCc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF-P-TDYVPTVFDNFSANVVVDGS-------------T--VNLGLWDTAGQEDY 68 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~D~~g~~~~ 68 (197)
...+++++|++|||||||+|+|.+... . ..+..++.......+.+.+. . ..+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999999654 2 33333444444555556541 1 35789999996442
Q ss_pred cc-------ccccCcCCCcEEEEEEECCC
Q 029177 69 NR-------LRPLSYRGADVFLLAFSLIS 90 (197)
Q Consensus 69 ~~-------~~~~~~~~~~~~i~v~d~~~ 90 (197)
.+ .+...++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 12223578999999999864
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.03 E-value=3.3e-10 Score=88.57 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=73.7
Q ss_pred CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ 143 (197)
Q Consensus 64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (197)
.+++|++....+.+.+|++++|+|++++. ..|...+.+...+.|+++|+||+|+.... ...+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence 45678888888888999999999999863 34555566555689999999999997532 22333
Q ss_pred HHH----HHHHcCC--cEEEEecccCCCCHHHHHHHHHHHH
Q 029177 144 GEE----LKKLIGA--AVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 144 ~~~----~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
..+ +++..+. .+++.+||++|+|++++++.+.+..
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 333 3555565 2789999999999999999998754
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.91 E-value=1e-09 Score=85.90 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177 64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ 143 (197)
Q Consensus 64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (197)
.+++|++....+++.++++++|+|++++.+ .|...+.+...+.|+++|+||+|+.... ...+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~~ 119 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYPK 119 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHHH
Confidence 477888888888889999999999999874 2333344444578999999999997532 22333
Q ss_pred HHHH----HHHcCC--cEEEEecccCCCCHHHHHHHHHHHH
Q 029177 144 GEEL----KKLIGA--AVYIECSSKTQQNVKTVFDAAIKVV 178 (197)
Q Consensus 144 ~~~~----~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 178 (197)
..++ .+..+. .+++.+||++|+|++++++.+.+..
T Consensus 120 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333 455564 3789999999999999999998765
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=8.9e-11 Score=91.89 Aligned_cols=138 Identities=11% Similarity=0.114 Sum_probs=77.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC------CCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc----c--
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN------TFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----L-- 74 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----~-- 74 (197)
.+++++|.+|+|||||+|+|++. ... .....++.. .....+... +.++||||-........ .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999975 221 112222222 122333332 67999999653321111 1
Q ss_pred --C--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177 75 --S--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL 150 (197)
Q Consensus 75 --~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
+ .+..+.++++++......+..+ .+ ++.+.. .+.|+++++||.|..+... .......+.+.
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~ 302 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL-AR-LDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYANQ 302 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT-EE-EEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHH
T ss_pred HHHhcccccCceEEEEcCCceEEECCE-EE-EEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHHh
Confidence 1 1568899999987433111121 11 112221 3689999999999876542 12223345555
Q ss_pred cCCcEEEEecccCCCC
Q 029177 151 IGAAVYIECSSKTQQN 166 (197)
Q Consensus 151 ~~~~~~~~~Sa~~~~~ 166 (197)
.+. .+...++.+.++
T Consensus 303 ~g~-~l~p~~~~~~~~ 317 (369)
T 3ec1_A 303 LGE-LLSPPSKRYAAE 317 (369)
T ss_dssp BTT-TBCSSCGGGTTT
T ss_pred cCC-ccCCCCchhhhh
Confidence 554 455555544433
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=4.5e-08 Score=77.47 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=61.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCc-eeeeeeEEEEECCeEEEEEEEecCCCcCccc----------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------- 70 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------- 70 (197)
..++++|+|++|+|||||++.+.+..+.... .+. ............+-...+.++|++|-.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3467999999999999999999986432211 111 1111111111122224688999998532100
Q ss_pred ----c-----------cc--cCcCCC--cE-EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 71 ----L-----------RP--LSYRGA--DV-FLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 71 ----~-----------~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
. .. .....+ |+ ++++.|....-+..+. .++..+. .+.|+|+|.||+|....
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 0 00 011222 34 4455566544443332 3334443 47899999999998654
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.86 E-value=1.6e-09 Score=87.69 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=85.2
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc------CCC----CCCCCCce------------eeeeeEEEE-------------
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS------NTF----PTDYVPTV------------FDNFSANVV------------- 49 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~------~~~----~~~~~~~~------------~~~~~~~~~------------- 49 (197)
.+...|+++|.+||||||++++|.. .+. .+.+.+.. ...+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3466899999999999999999982 211 01111111 000000000
Q ss_pred ECCeEEEEEEEecCCCcCccc-cccc---C--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCC
Q 029177 50 VDGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQD 122 (197)
Q Consensus 50 ~~~~~~~~~~~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D 122 (197)
.....+.+.|+||||...... .+.. . +..+|.+++|+|++........ ...+.. .+|+ .+|.||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh---hcCceEEEEeCCc
Confidence 000225778999999764221 1100 0 1268999999999876442221 222332 2575 78899999
Q ss_pred cccchhhhcCCCCCCCccHHHHHHHHHHcCCc-----------------EEEEecccCCCC-HHHHHHHHHHH
Q 029177 123 LREDKQYLINHPGATPITTAQGEELKKLIGAA-----------------VYIECSSKTQQN-VKTVFDAAIKV 177 (197)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~Sa~~~~~-i~~~~~~i~~~ 177 (197)
...... .+.......+.+ +.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g--------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG--------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT--------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH--------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 864321 122233334331 123478999999 99999998876
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.86 E-value=2.6e-08 Score=74.59 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=63.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------CCceeeeeeEEEEECCe--EEEEEEEecCCCcCccc---c--
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------VPTVFDNFSANVVVDGS--TVNLGLWDTAGQEDYNR---L-- 71 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~---~-- 71 (197)
.++++++|++|+|||||++.+++...+... .+.........+..... ...++++|++|-..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 479999999999999999999873221110 01000000111111211 13678999998422100 0
Q ss_pred -----------------------cccCcCCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 72 -----------------------RPLSYRGADVFLLAFSLI-SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 72 -----------------------~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
....+..++++++++|.. .+-+..+ ..++..+.. ..++++|.+|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence 011233568888888854 3323233 234445544 3899999999998654
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.81 E-value=1.6e-10 Score=90.36 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=64.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC--------CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc-----
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFP--------TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL----- 74 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~----- 74 (197)
.+++++|.+|+|||||+|+|++.... .....++.. ...+.+.+. +.++||||-.........
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 47999999999999999999985211 111122211 122333332 679999997543321111
Q ss_pred -----CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177 75 -----SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127 (197)
Q Consensus 75 -----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 127 (197)
..+..+.++++++......+..+ . .++.+.. .+.|+++++||.|..+..
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGL-A-RFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcce-E-EEEEecC--CCceEEEEecCccccccc
Confidence 13567888888887433111121 1 1111221 368999999999988653
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.75 E-value=1.2e-07 Score=74.91 Aligned_cols=166 Identities=12% Similarity=0.090 Sum_probs=85.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eee--eeEEEEECCeEEEEEEEecCCCcCcccc-----cccCcCC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDN--FSANVVVDGSTVNLGLWDTAGQEDYNRL-----RPLSYRG 78 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~~~~~ 78 (197)
...++++|++|+|||||+|.+.+-..+....-.. ... ....+......-.+.+||++|-...... ...-+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3579999999999999999999843221111000 000 0011111111114679999985321111 1111233
Q ss_pred CcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh-cCCCCCCCccHHHHHHHH----HHc
Q 029177 79 ADVFLLAFSLI--SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL-INHPGATPITTAQGEELK----KLI 151 (197)
Q Consensus 79 ~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~ 151 (197)
.+..++ ++.. .+.... +...+... +.|+++|.||.|+.--.++. ..++..+....+...++. .+.
T Consensus 149 ~~~~~~-lS~G~~~kqrv~-----la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDID-----IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp CSEEEE-EESSCCCHHHHH-----HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEE-eCCCCccHHHHH-----HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455554 7776 332222 22233322 68999999999975211111 111111111122333333 122
Q ss_pred C--CcEEEEecc--cCCCCHHHHHHHHHHHHcC
Q 029177 152 G--AAVYIECSS--KTQQNVKTVFDAAIKVVLQ 180 (197)
Q Consensus 152 ~--~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~ 180 (197)
+ ....+.+|+ .++.|++++.+.+.+.+..
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 2 335788999 5566799999999887643
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.74 E-value=1.1e-08 Score=77.09 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=66.7
Q ss_pred EEecCCCcC-cccccccCcCCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCC
Q 029177 59 LWDTAGQED-YNRLRPLSYRGADVFLLAFSLISKASYEN-ISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGA 136 (197)
Q Consensus 59 ~~D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 136 (197)
+-..|||.. ........+.++|+++.|+|+.++.+... ....|+ .+.|.++|+||+|+.+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~-------- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAV-------- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHH--------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHH--------
Confidence 445788853 33445556889999999999999877642 113332 4789999999999965211
Q ss_pred CCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177 137 TPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179 (197)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 179 (197)
.+...++.+..+. +++.+||+++.|+++++..+.+.+.
T Consensus 68 ----~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 68 ----TQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ----HHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence 1222233334455 7999999999999999998877654
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.62 E-value=4e-08 Score=74.05 Aligned_cols=57 Identities=25% Similarity=0.246 Sum_probs=35.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
..++++++|.||||||||+|+|.+... ... ...++... ..+..+. .+.+|||||...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcCC
Confidence 468999999999999999999998653 111 22222211 1222333 467999999743
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.59 E-value=2.3e-08 Score=74.58 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=34.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 67 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~ 67 (197)
++++++|.+|+|||||+|+|.+...... .++.. +.....+..+. .+++|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5999999999999999999998654211 11111 11111222222 567999999764
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.45 E-value=2.1e-07 Score=76.61 Aligned_cols=64 Identities=19% Similarity=0.098 Sum_probs=39.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEE---EE-CCeEEEEEEEecCCCcCc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANV---VV-DGSTVNLGLWDTAGQEDY 68 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~D~~g~~~~ 68 (197)
....+|+|+|.||||||||+|+|++........+++.... .... .. ......+.++||||....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 3568899999999999999999998653222222221111 1111 11 112246779999997543
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.41 E-value=5.3e-07 Score=71.71 Aligned_cols=139 Identities=15% Similarity=0.119 Sum_probs=75.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc----CCC------CCCCCCce-------eeeeeEEEEEC-----------------
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS----NTF------PTDYVPTV-------FDNFSANVVVD----------------- 51 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~----~~~------~~~~~~~~-------~~~~~~~~~~~----------------- 51 (197)
++..|+++|++||||||++..|.. ... .+.+.+.. .......+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999987763 110 01111110 00000001100
Q ss_pred -CeEEEEEEEecCCCcCccccc-c-----cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177 52 -GSTVNLGLWDTAGQEDYNRLR-P-----LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124 (197)
Q Consensus 52 -~~~~~~~~~D~~g~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 124 (197)
...+.+.++||||........ . .....+|.+++|+|++........ ...+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 012667799999964322110 0 012357899999999875443332 1233322 23456889999986
Q ss_pred cchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 167 (197)
... ..+..+....+. |+..++. |+++
T Consensus 253 ~~g--------------G~~ls~~~~~g~-PI~fig~--Ge~v 278 (443)
T 3dm5_A 253 AKG--------------GGALSAVAATGA-PIKFIGT--GEKI 278 (443)
T ss_dssp SSH--------------HHHHHHHHTTCC-CEEEEEC--SSST
T ss_pred ccc--------------cHHHHHHHHHCC-CEEEEEc--CCCh
Confidence 532 234555556665 6665554 4443
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.32 E-value=5e-07 Score=71.96 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=39.1
Q ss_pred EEEEEEecCCCcCccc-cc-----ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-C-EEEEeeCCCccc
Q 029177 55 VNLGLWDTAGQEDYNR-LR-----PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTV-P-IVLVGTKQDLRE 125 (197)
Q Consensus 55 ~~~~~~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~D~~~ 125 (197)
+.+.++||||...... .. -..+..+|.+++|+|++...... .....+. +.. | ..+|.||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~---~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFK---EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHh---hcccCCeEEEEeCCCCcc
Confidence 5678999999754211 00 11223689999999987654211 1122222 245 6 789999999854
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.24 E-value=2.8e-07 Score=68.73 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=60.4
Q ss_pred cCCCcCc-ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc
Q 029177 62 TAGQEDY-NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT 140 (197)
Q Consensus 62 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 140 (197)
.|||... .......+.++|+++.|+|+.++.+.... .. .. . +.|.++|+||+|+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l-~l----l-~k~~iivlNK~DL~~~~~------------ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GV-DF----S-RKETIILLNKVDIADEKT------------ 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TS-CC----T-TSEEEEEEECGGGSCHHH------------
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HH-Hh----c-CCCcEEEEECccCCCHHH------------
Confidence 5777543 23445567899999999999998765432 11 11 1 689999999999965321
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177 141 TAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177 (197)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 177 (197)
.+...++.+..+. ++ .+||+++.|+++++..+...
T Consensus 64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence 1222333444565 67 99999999999998876543
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.18 E-value=1.7e-06 Score=65.75 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=60.9
Q ss_pred cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCc--cHHHHHHH
Q 029177 70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPI--TTAQGEEL 147 (197)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~ 147 (197)
.+....+.++|.+++|+|+.++..-.....+++-..... ++|.++|+||+|+.++.. . ..+.....
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~ 145 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAYAED 145 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHHHHH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHHHHH
Confidence 344456889999999999997765333436666554443 789999999999976321 0 01222233
Q ss_pred HHHcCCcEEEEecccCCCCHHHHHHH
Q 029177 148 KKLIGAAVYIECSSKTQQNVKTVFDA 173 (197)
Q Consensus 148 ~~~~~~~~~~~~Sa~~~~~i~~~~~~ 173 (197)
....+. +++.+||.++.|+++++..
T Consensus 146 y~~~g~-~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 146 YRNIGY-DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred HHhCCC-eEEEEecCCCCCHHHHHhh
Confidence 334465 8899999999988776643
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.09 E-value=5.5e-06 Score=65.84 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=53.0
Q ss_pred EEEEEEecCCCcC--cccc----ccc--CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177 55 VNLGLWDTAGQED--YNRL----RPL--SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126 (197)
Q Consensus 55 ~~~~~~D~~g~~~--~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 126 (197)
+.+.++||||... .... ... ..-..+.+++|+|+......... ...+... -.+..+|.||.|....
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccccc
Confidence 5677999999644 1110 000 01246899999999875443332 2233322 2356788999998642
Q ss_pred hhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 167 (197)
...+.......+. |+..++. |+++
T Consensus 254 --------------~G~als~~~~~g~-Pi~fig~--Ge~v 277 (433)
T 3kl4_A 254 --------------GGGALSAVVATGA-TIKFIGT--GEKI 277 (433)
T ss_dssp --------------HHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred --------------chHHHHHHHHHCC-CEEEEEC--CCCh
Confidence 2345566666776 7766664 5554
No 230
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.05 E-value=7.7e-08 Score=77.61 Aligned_cols=112 Identities=14% Similarity=-0.060 Sum_probs=63.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcC--ccccc--------cc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED--YNRLR--------PL 74 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~~ 74 (197)
..++|+++|.+|+||||+.++|...... ...++..... .......+......+||..|.+. .+..+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998764210 1111111000 00000011112345788888732 22222 34
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 122 (197)
++...++.++|+|.++. +.+.. ..|...+... ..+++++-..++
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEEEECC
Confidence 45567888999999998 44444 6777777665 445555443333
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=2.3e-06 Score=64.86 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=54.0
Q ss_pred EEEEEEecCCCcC--ccc-ccc-----cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCccc
Q 029177 55 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLRE 125 (197)
Q Consensus 55 ~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~ 125 (197)
+.+.++||||... ... ... .....+|.+++|+|.+...... . ....+.. ..| ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~-~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY---D-LASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---H-HHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH---H-HHHHHHh---hCCCCEEEEeCCCCCc
Confidence 5678999999766 211 110 1234689999999987532221 1 1222332 356 678899999753
Q ss_pred chhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHH
Q 029177 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKT 169 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 169 (197)
. ...+..+....+. |+..++ +|+++++
T Consensus 254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 K--------------GGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred c--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 2 2344567777776 666655 4666643
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.96 E-value=4.8e-06 Score=69.18 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 38999999999999999998864
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.82 E-value=0.00014 Score=56.41 Aligned_cols=84 Identities=21% Similarity=0.177 Sum_probs=55.4
Q ss_pred CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH---Hc
Q 029177 75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK---LI 151 (197)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 151 (197)
...++|.+++|... ++..-.....+++-..... ++|.+||+||+|+.++.. .+...++.. ..
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~------------~~~~~~~~~~y~~~ 191 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG------------MDFVNEQMDIYRNI 191 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH------------HHHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh------------HHHHHHHHHHHHhC
Confidence 35789999988665 4543333336665554444 688899999999965321 111333333 44
Q ss_pred CCcEEEEecccCCCCHHHHHHHH
Q 029177 152 GAAVYIECSSKTQQNVKTVFDAA 174 (197)
Q Consensus 152 ~~~~~~~~Sa~~~~~i~~~~~~i 174 (197)
|. +++.+||.++.|++++...+
T Consensus 192 G~-~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 192 GY-RVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TC-CEEECBTTTTBTHHHHHHHH
T ss_pred CC-cEEEEecCCCcCHHHHHHhc
Confidence 65 78999999999999887653
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.78 E-value=3.6e-05 Score=61.43 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.1
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+..-|.|+|++++|||||+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3566799999999999999999985
No 235
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.63 E-value=3.3e-05 Score=54.29 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=22.0
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+--.++++|++|+|||||++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 33456999999999999999999775
No 236
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.62 E-value=3.2e-05 Score=54.98 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
||+....-.|+|+|++|+||||+++.+.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34444445799999999999999998865
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.58 E-value=4.2e-05 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
+++++|++|+|||||++.+.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999888763
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.57 E-value=4.1e-05 Score=53.52 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.54 E-value=3.1e-05 Score=58.82 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|||||||+|.+.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999999874
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.52 E-value=5.2e-05 Score=53.89 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
No 241
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.51 E-value=5.4e-05 Score=54.10 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=21.3
Q ss_pred CCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177 3 NTARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 3 ~~~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+..+...|+|+|++|||||||++.+.+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 444557899999999999999988765
No 242
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.49 E-value=6.4e-05 Score=54.28 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=21.1
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
||+.. ..|+++|++||||||+.+.|.+
T Consensus 1 mm~~~--~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 1 MTAIA--PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp --CCS--CEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCC--eEEEEECCCCCCHHHHHHHHHH
Confidence 66542 4899999999999999988764
No 243
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.43 E-value=0.00022 Score=54.14 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029177 9 KCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~ 28 (197)
.++++|++|+|||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.42 E-value=8e-05 Score=52.30 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 029177 10 CVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~ 29 (197)
++++|++|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999885
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.41 E-value=8.5e-05 Score=52.71 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=0.00012 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-|+++|++||||||+++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999875
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.39 E-value=8.3e-05 Score=51.53 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029177 9 KCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~ 28 (197)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 248
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.38 E-value=8.5e-05 Score=53.83 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
|....+...|+++|.+||||||+.+.|..
T Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 1 MGASARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp ------CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCccccCcEEEEECCCCCCHHHHHHHHHH
Confidence 44445567899999999999999988864
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.38 E-value=0.0001 Score=51.89 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999863
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.37 E-value=0.00012 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
--|+|+|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999863
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.36 E-value=0.0001 Score=53.27 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++|+|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999998874
No 252
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.35 E-value=0.00012 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~ 31 (197)
-.|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999987753
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.34 E-value=0.00011 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988764
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.34 E-value=0.00011 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|++|+|||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999998773
No 255
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.31 E-value=0.00018 Score=51.15 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..|++.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 256
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.30 E-value=0.00018 Score=50.43 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=22.3
Q ss_pred CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177 2 MNTARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 2 ~~~~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
|+......|++.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 3333446799999999999999988865
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.29 E-value=0.0002 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-|++.|.+||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999998763
No 258
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.27 E-value=0.00018 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.8
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+...|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999888654
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.27 E-value=0.00013 Score=52.09 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
....|+|+|++|+|||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988765
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.27 E-value=0.00015 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.-|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998763
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.24 E-value=0.00018 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.|+++|++||||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988763
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.23 E-value=0.00018 Score=49.42 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHH
Q 029177 9 KCVTVGDGAVGKTCMLISY 27 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l 27 (197)
-|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.23 E-value=0.00018 Score=49.43 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.22 E-value=0.00023 Score=49.22 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.21 E-value=0.00029 Score=48.73 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
--.|+++|++|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999988865
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.20 E-value=0.0002 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999888764
No 267
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.19 E-value=0.00019 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=21.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.19 E-value=0.00021 Score=50.13 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 269
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.18 E-value=0.00023 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999888754
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00022 Score=51.09 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.17 E-value=0.00022 Score=55.28 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++++|++|||||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999754
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.16 E-value=0.00023 Score=50.98 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 273
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.16 E-value=0.00033 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.15 E-value=0.00027 Score=51.85 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHh
Q 029177 7 FIKCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~ 28 (197)
.-.|+|+|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 275
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.14 E-value=0.00034 Score=51.29 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.7
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+..+|++.|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998864
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.11 E-value=0.00028 Score=50.07 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..|+|+|.+||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.11 E-value=0.00035 Score=48.92 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988864
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.10 E-value=0.0003 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 279
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.10 E-value=0.00025 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888764
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.00033 Score=49.63 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999988864
No 281
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.09 E-value=0.00041 Score=48.36 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 282
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.09 E-value=0.00027 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999988776
No 283
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.08 E-value=0.00032 Score=50.17 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988865
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.07 E-value=0.00029 Score=48.73 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 285
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.07 E-value=0.00031 Score=52.53 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 286
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.07 E-value=0.0004 Score=49.17 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.....|+++|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 287
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.07 E-value=0.00033 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 288
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.07 E-value=0.00034 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988865
No 289
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.07 E-value=0.00048 Score=48.77 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+...|++.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988864
No 290
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.06 E-value=0.00032 Score=52.07 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.06 E-value=0.00035 Score=48.62 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5889999999999999999864
No 292
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.06 E-value=0.00038 Score=49.19 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
No 293
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.06 E-value=0.00037 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.05 E-value=0.00043 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 295
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.05 E-value=0.00043 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
..|++.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 296
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.04 E-value=0.00034 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988774
No 297
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.04 E-value=0.00035 Score=51.75 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.04 E-value=0.00034 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|++.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 299
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.04 E-value=0.00039 Score=51.17 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988764
No 300
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.04 E-value=0.0004 Score=50.96 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988764
No 301
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.04 E-value=0.00033 Score=49.71 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|+|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999998876
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.03 E-value=0.00038 Score=52.82 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++|+|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999988775
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.02 E-value=0.00036 Score=51.79 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++++|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998876
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.00039 Score=49.28 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.--|+++|++|+||||+.+.+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988765
No 305
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.01 E-value=0.00039 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999988764
No 306
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.01 E-value=0.00036 Score=48.50 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999888653
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.00 E-value=0.00045 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
No 308
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.00 E-value=0.00045 Score=48.15 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 309
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.00 E-value=0.00036 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++++|++|+|||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998743
No 310
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.99 E-value=0.00041 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 311
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.99 E-value=0.00045 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988865
No 312
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.99 E-value=0.00037 Score=49.93 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988865
No 313
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.99 E-value=0.00042 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 314
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.99 E-value=0.00043 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 315
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.98 E-value=0.00044 Score=50.97 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998875
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.98 E-value=0.00044 Score=50.45 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029177 9 KCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~ 28 (197)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.97 E-value=0.00046 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.-.|+++|.+|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.97 E-value=0.00025 Score=51.45 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHh-cC
Q 029177 9 KCVTVGDGAVGKTCMLISYT-SN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~-~~ 30 (197)
-++++|++||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 53
No 319
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.97 E-value=0.00053 Score=50.48 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=21.5
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988865
No 320
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.97 E-value=0.00048 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999988764
No 321
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.95 E-value=0.00037 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 322
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.95 E-value=0.00048 Score=51.28 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 323
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.95 E-value=0.00053 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988764
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.95 E-value=0.00057 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=21.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...-|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.94 E-value=0.00052 Score=51.21 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 326
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.94 E-value=0.00067 Score=51.83 Aligned_cols=25 Identities=20% Similarity=0.024 Sum_probs=21.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
..++-|+|+|++|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988754
No 327
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.94 E-value=0.00069 Score=51.07 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.3
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+...|+|+|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987654
No 328
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.94 E-value=0.00049 Score=50.84 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 329
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.92 E-value=0.00071 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.6
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+..-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456799999999999999988876
No 330
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.91 E-value=0.00045 Score=49.77 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 331
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.91 E-value=0.00053 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988764
No 332
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.90 E-value=0.00024 Score=49.27 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999888763
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.90 E-value=0.00061 Score=46.62 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 334
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00064 Score=47.96 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=22.1
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998764
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.89 E-value=0.00069 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|+|+|+.|||||||++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998866
No 336
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.88 E-value=0.00049 Score=53.55 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-+++|+|++|+|||||++.+.+-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988774
No 337
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.00066 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887653
No 338
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.87 E-value=0.00064 Score=49.10 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 339
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.87 E-value=0.00079 Score=47.85 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=21.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
....|+|+|++|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988764
No 340
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.86 E-value=0.00066 Score=48.27 Aligned_cols=23 Identities=17% Similarity=-0.107 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 341
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.84 E-value=0.00045 Score=47.97 Aligned_cols=23 Identities=22% Similarity=-0.012 Sum_probs=16.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.82 E-value=0.00065 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.074 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..|++.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.82 E-value=0.00077 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..++++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998876
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.82 E-value=0.0005 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988865
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.81 E-value=0.0012 Score=46.14 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.6
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+...|+++|.+|+||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999988865
No 346
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.81 E-value=0.00049 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999887653
No 347
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.81 E-value=0.00022 Score=50.23 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988865
No 348
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.80 E-value=0.00075 Score=47.37 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 349
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.79 E-value=0.00075 Score=48.46 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988865
No 350
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.79 E-value=0.0008 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988866
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.78 E-value=0.00094 Score=49.19 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHh
Q 029177 8 IKCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~ 28 (197)
..|+|+|++||||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998887
No 352
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.78 E-value=0.00091 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999888663
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.77 E-value=0.001 Score=47.14 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=20.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
....|+++|++|+||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999988764
No 354
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.77 E-value=0.00065 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 355
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.75 E-value=0.00082 Score=50.21 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999998763
No 356
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.74 E-value=0.00056 Score=46.25 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 357
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.74 E-value=0.00086 Score=52.10 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999888764
No 358
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.74 E-value=0.00073 Score=52.39 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999988774
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.74 E-value=0.00089 Score=48.24 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-|+++|+|||||+|...+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367799999999999988865
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.73 E-value=0.00096 Score=45.81 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988865
No 361
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.72 E-value=0.00084 Score=52.10 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++|+|++|+||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998876
No 362
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.72 E-value=0.0012 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.72 E-value=0.00087 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.-.++++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999988764
No 364
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.72 E-value=0.00091 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998764
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.72 E-value=0.0009 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 366
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.72 E-value=0.00092 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 367
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.71 E-value=0.0011 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHH
Q 029177 6 RFIKCVTVGDGAVGKTCMLISY 27 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l 27 (197)
+.+||+++|.+|||||||+.++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4689999999999999999775
No 368
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.71 E-value=0.00086 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988764
No 369
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.71 E-value=0.00032 Score=50.04 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998865
No 370
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.70 E-value=0.0011 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...|+++|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988865
No 371
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.69 E-value=0.0012 Score=48.82 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 372
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.69 E-value=0.001 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988865
No 373
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.69 E-value=0.00098 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999988764
No 374
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.68 E-value=0.001 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4789999999999999988764
No 375
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.68 E-value=0.001 Score=51.72 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999988764
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.65 E-value=0.0011 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.--++++|+.||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999988764
No 377
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.65 E-value=0.0013 Score=45.01 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 378
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.65 E-value=0.0012 Score=48.13 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.5
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+.+.|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988864
No 379
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.64 E-value=0.0011 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999988764
No 380
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.64 E-value=0.0012 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+...|+|+|++|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 381
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.64 E-value=0.0011 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999988764
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.63 E-value=0.0012 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
-..|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988866
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.63 E-value=0.001 Score=51.88 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++|+|++|+||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
No 384
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.63 E-value=0.0011 Score=47.57 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998875
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.61 E-value=0.001 Score=51.13 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998874
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.61 E-value=0.00092 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.-|++.|+.|+||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999988764
No 387
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.61 E-value=0.00098 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999774
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.61 E-value=0.0014 Score=49.18 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+.+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998863
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.57 E-value=0.0018 Score=49.66 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=50.0
Q ss_pred EEEEEecCCCcCcccccccC------cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177 56 NLGLWDTAGQEDYNRLRPLS------YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY 129 (197)
Q Consensus 56 ~~~~~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 129 (197)
.+.+.|++|........... .-..|-.+++.|.......... ...+.... + .-.++.||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~----~~~~~~~~-~-it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ----ARQFNEAV-K-IDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH----HHHHHHHS-C-CCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH----HHHHHHhc-C-CCEEEEeCcCCccc---
Confidence 45579999975432211111 1136888999997765433222 22233221 2 23677899997432
Q ss_pred hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHH
Q 029177 130 LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKT 169 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 169 (197)
.-.+.......+. |+..++ +|+++++
T Consensus 284 -----------~G~~l~~~~~~~~-pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 -----------GGAALSISYVIDA-PILFVG--VGQGYDD 309 (328)
T ss_dssp -----------CHHHHHHHHHHTC-CEEEEE--CSSSTTC
T ss_pred -----------hhHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence 1234566777776 666665 6666543
No 390
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.56 E-value=0.0013 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999988764
No 391
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.55 E-value=0.0011 Score=45.72 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999888653
No 392
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.54 E-value=0.00092 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999988764
No 393
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.53 E-value=0.0014 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988763
No 394
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.51 E-value=0.0014 Score=51.96 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++|+|+.|+||||+++.+.+-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998873
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.50 E-value=0.0016 Score=46.49 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
..-|+++|.+|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988754
No 396
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.49 E-value=0.0018 Score=46.74 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.+++.|++|+|||++++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988865
No 397
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.49 E-value=0.0022 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=20.7
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...--|+|+|++|||||||...+..
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3344688999999999999998865
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.48 E-value=0.0024 Score=46.34 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=20.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.-|++.|++|+||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 399
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.47 E-value=0.0017 Score=46.35 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 400
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.0016 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.++++|++|+||||+++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 401
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.47 E-value=0.0014 Score=51.44 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 578999999999999988876
No 402
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.44 E-value=0.0018 Score=46.94 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0015 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|+++|++|+||||+.+.|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988864
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0017 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.--++++|+.||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999987764
No 405
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.44 E-value=0.0015 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
.++|+|++||||||+++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998743
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.43 E-value=0.0017 Score=45.05 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999998764
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.42 E-value=0.0015 Score=49.09 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 408
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.41 E-value=0.0024 Score=45.07 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+.|++.|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999888653
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.41 E-value=0.00091 Score=51.81 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 410
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.41 E-value=0.0019 Score=48.64 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..|++.|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 411
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.40 E-value=0.0022 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999888763
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.36 E-value=0.002 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.--++|+|++|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999988764
No 413
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.36 E-value=0.0019 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998863
No 414
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0016 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999988763
No 415
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.30 E-value=0.0024 Score=45.87 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-+++.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988865
No 416
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.30 E-value=0.0026 Score=42.53 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988764
No 417
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.30 E-value=0.0089 Score=47.69 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHh
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~ 28 (197)
...-|.|+|+.++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45567899999999999999554
No 418
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0025 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999888653
No 419
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.28 E-value=0.012 Score=45.84 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 029177 10 CVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~ 28 (197)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 420
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.24 E-value=0.0032 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988865
No 421
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.23 E-value=0.003 Score=45.82 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+++.++|+|||||||+..+|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 46899999999999999988764
No 422
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.22 E-value=0.0016 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++|+|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4688999999999999999975
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.22 E-value=0.0026 Score=49.68 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.19 E-value=0.0034 Score=42.31 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 029177 10 CVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~ 28 (197)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999998865
No 425
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.18 E-value=0.0028 Score=47.18 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+|||++++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998764
No 426
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.18 E-value=0.0028 Score=47.54 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+|||++++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 427
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.17 E-value=0.0031 Score=46.26 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998865
No 428
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.17 E-value=0.004 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988865
No 429
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.14 E-value=0.005 Score=47.57 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=20.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHhc
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
....+|+++|++|+||||+.+.+..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999976543
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.13 E-value=0.0042 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=20.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
..-|+++|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998763
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.12 E-value=0.0031 Score=50.78 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999988875
No 432
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.11 E-value=0.0035 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998874
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.11 E-value=0.003 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999888753
No 434
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.11 E-value=0.0026 Score=45.34 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.+++.|+||+||||++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999877765
No 435
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.11 E-value=0.0018 Score=48.81 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=16.8
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999988764
No 436
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.09 E-value=0.0031 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999888764
No 437
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.07 E-value=0.003 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988875
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.07 E-value=0.0041 Score=45.13 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.8
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
....|+++|.+|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988765
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.05 E-value=0.0036 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999888764
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.04 E-value=0.0044 Score=43.77 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.|.|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.04 E-value=0.0036 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+++.|++|+|||+|++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999988764
No 442
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.04 E-value=0.0036 Score=47.66 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.+++.|++|+|||||++.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999988876
No 443
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.02 E-value=0.0038 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~ 31 (197)
..|+++|++|+|||||...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998753
No 444
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.01 E-value=0.0036 Score=45.38 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++++|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877754
No 445
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.00 E-value=0.0038 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998874
No 446
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.98 E-value=0.0047 Score=46.48 Aligned_cols=24 Identities=13% Similarity=-0.081 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
+.-+++.|+||+|||+|++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456788899999999999988753
No 447
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0041 Score=51.68 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999998874
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.93 E-value=0.0062 Score=44.00 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=21.1
Q ss_pred CcceEEEEEECCCCCCHHHHHHHHhc
Q 029177 4 TARFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 4 ~~~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
..+..-|++.|.+|+||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999988764
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.93 E-value=0.0056 Score=46.11 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=19.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999976654
No 450
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.0039 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.+++.|++|+|||||++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998876
No 451
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.91 E-value=0.0047 Score=46.38 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988865
No 452
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.90 E-value=0.004 Score=46.98 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHh
Q 029177 8 IKCVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~ 28 (197)
-.++++|++|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998765
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.90 E-value=0.0041 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.+.|++.|.+|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988765
No 454
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.89 E-value=0.0033 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999888764
No 455
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.89 E-value=0.0075 Score=44.65 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
..-.+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999988763
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.89 E-value=0.0038 Score=46.12 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.2
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
+...|++.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999887654
No 457
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.88 E-value=0.0048 Score=47.89 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 458
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.87 E-value=0.0037 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999888663
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.87 E-value=0.0051 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998874
No 460
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.86 E-value=0.0051 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=19.3
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
.--|+++|++|+||||++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999987653
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0056 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.7
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
...|++-|.+||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999988763
No 462
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.85 E-value=0.0053 Score=42.78 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 463
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.0041 Score=47.80 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 029177 10 CVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~ 29 (197)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999988766
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.83 E-value=0.0031 Score=52.07 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999976655
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.83 E-value=0.005 Score=50.39 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|+.|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 466
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.82 E-value=0.0062 Score=43.77 Aligned_cols=28 Identities=21% Similarity=0.043 Sum_probs=22.5
Q ss_pred CCCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177 1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
||.. -.-|++-|.+|+||||+++.+...
T Consensus 1 ~m~~--g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 1 MMGR--GKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCC--CCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence 6643 346889999999999999988763
No 467
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.80 E-value=0.0046 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 468
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.79 E-value=0.016 Score=44.03 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=25.2
Q ss_pred cEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 029177 80 DVFLLAFSLISKAS-YENISKKWIPELRHYAPTVPIVLVGTKQDL 123 (197)
Q Consensus 80 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 123 (197)
..-++++|=-+.-+ -+.. ..++..+....++.++|+..|..+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~-~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQ-RHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHH-HHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHH-HHHHHHHHhCCCCcEEEEEeCCccc
Confidence 55666776555443 3332 4455555554456788888877663
No 469
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.78 E-value=0.0027 Score=42.39 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999877553
No 470
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.77 E-value=0.0063 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999887653
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.76 E-value=0.0063 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.0056 Score=46.97 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 029177 10 CVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~ 30 (197)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999888764
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.75 E-value=0.0067 Score=41.98 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~~ 31 (197)
-+++.|++|+||||+...|....
T Consensus 18 gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHcC
Confidence 58999999999999999998753
No 474
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.75 E-value=0.0042 Score=51.40 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999877653
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.73 E-value=0.0065 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.++|+|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998874
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.71 E-value=0.0083 Score=43.00 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=20.4
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+-.-|++-|.+|+||||+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999988865
No 477
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.70 E-value=0.0062 Score=46.50 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|+||+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 36999999999999999988764
No 478
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.65 E-value=0.0066 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+++.|++|+||||+++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999887653
No 479
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.007 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 029177 10 CVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~~~~ 31 (197)
++++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998743
No 480
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.62 E-value=0.0057 Score=47.34 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~~ 30 (197)
.-.+++.|++|+||||+++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888753
No 481
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.62 E-value=0.0075 Score=45.93 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|+||+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988653
No 482
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.61 E-value=0.0071 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4889999999999999998764
No 483
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.61 E-value=0.008 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-|+|+|++|||||||...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 484
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.60 E-value=0.0031 Score=46.56 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998876
No 485
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.58 E-value=0.0085 Score=47.17 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=22.4
Q ss_pred cceEEEEEECCCCCCHHHHHHHHh---cCCCCC
Q 029177 5 ARFIKCVTVGDGAVGKTCMLISYT---SNTFPT 34 (197)
Q Consensus 5 ~~~~ki~vvG~~~~GKstli~~l~---~~~~~~ 34 (197)
.+.+|++++|...|||||++.++. ++.|..
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~ 70 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMRILHVNGFNG 70 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHHHHHCCC---
T ss_pred hccceEEEecCCCCchhhHHHHHHHHhCCCCCh
Confidence 357999999999999999997654 345543
No 486
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.56 E-value=0.0065 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-+++++|+||+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988765
No 487
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.55 E-value=0.011 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-|+|+|++|||||||...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5889999999999999998754
No 488
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.53 E-value=0.0078 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999999998654
No 489
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.53 E-value=0.009 Score=42.39 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 029177 10 CVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~ 28 (197)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999998764
No 490
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.52 E-value=0.0088 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHhc
Q 029177 8 IKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.+++.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987765
No 491
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.51 E-value=0.0083 Score=44.20 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSNT 31 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~~ 31 (197)
..+++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999987653
No 492
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.51 E-value=0.0068 Score=46.80 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
.+++.|++|+|||++++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988753
No 493
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.48 E-value=0.0056 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.033 Sum_probs=16.9
Q ss_pred eEEEEEECCCCCCHHHHHHHHhc
Q 029177 7 FIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 7 ~~ki~vvG~~~~GKstli~~l~~ 29 (197)
-.-|++.|.+||||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999988765
No 494
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.45 E-value=0.0073 Score=46.11 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 029177 9 KCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~~ 30 (197)
-++|.|++|+|||||++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999988763
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.45 E-value=0.0073 Score=49.29 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 029177 10 CVTVGDGAVGKTCMLISYT 28 (197)
Q Consensus 10 i~vvG~~~~GKstli~~l~ 28 (197)
++|+|++|+|||||++.|.
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 496
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.41 E-value=0.0085 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
.++++|++|+|||||++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988765
No 497
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0091 Score=47.41 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-|++.|+||+|||+|++++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999875
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.40 E-value=0.0092 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHhcC
Q 029177 8 IKCVTVGDGAVGKTCMLISYTSN 30 (197)
Q Consensus 8 ~ki~vvG~~~~GKstli~~l~~~ 30 (197)
-.+++.|++|+|||++++.+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999888763
No 499
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.38 E-value=0.0091 Score=43.50 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=20.3
Q ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Q 029177 6 RFIKCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 6 ~~~ki~vvG~~~~GKstli~~l~~ 29 (197)
+..-|++.|.+|+||||+++.+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999988765
No 500
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.38 E-value=0.0082 Score=47.26 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 029177 9 KCVTVGDGAVGKTCMLISYTS 29 (197)
Q Consensus 9 ki~vvG~~~~GKstli~~l~~ 29 (197)
-++|+|++|+|||||+..+.-
T Consensus 180 i~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999998764
Done!