BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029178
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K1R|B Chain B, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
           Sans
          Length = 74

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 139 ETS-VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           ETS ++ FL SL +E ++   + E++D+ AL+  +D DL+++ +P+GPR+KIL A+  R
Sbjct: 1   ETSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRR 59


>pdb|1PK1|A Chain A, Hetero Sam Domain Structure Of Ph And Scm.
 pdb|1PK1|C Chain C, Hetero Sam Domain Structure Of Ph And Scm
          Length = 89

 Score = 34.3 bits (77), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 142 VDGFLRSL-GLEKYSITFQAEEVDMTALLHMTDEDL-KALGIPMGPRKKILLALES 195
           V  F+R L G + Y   F  +E+D  ALL + ++ L  A G  +GP +KI+  +ES
Sbjct: 22  VSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAXGXKLGPARKIVAKVES 77


>pdb|3SEI|A Chain A, Crystal Structure Of Caskin1 Tandem Sams
 pdb|3SEI|B Chain B, Crystal Structure Of Caskin1 Tandem Sams
          Length = 149

 Score = 33.5 bits (75), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 131 KKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM-GPRKKI 189
           +K  + K+  +V  +L +  L+ Y+  F +   D+  +  MT EDL A+G+   G RKKI
Sbjct: 2   EKTREGKSSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKI 61


>pdb|3HIL|A Chain A, Sam Domain Of Human Ephrin Type-A Receptor 1 (Epha1)
 pdb|3HIL|B Chain B, Sam Domain Of Human Ephrin Type-A Receptor 1 (Epha1)
 pdb|3KKA|A Chain A, Co-Crystal Structure Of The Sam Domains Of Epha1 And Epha2
 pdb|3KKA|B Chain B, Co-Crystal Structure Of The Sam Domains Of Epha1 And Epha2
          Length = 82

 Score = 32.7 bits (73), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIPM-GPRKKILLALE 194
           +V  +L S+ +++Y + F +  +D M  +L +T EDL  +GI + G +K+IL +++
Sbjct: 25  TVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQ 80


>pdb|3SEN|A Chain A, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|B Chain B, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|C Chain C, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|D Chain D, Structure Of Caskin1 Tandem Sams
          Length = 157

 Score = 32.7 bits (73), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 137 KAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM-GPRKKI 189
           K+  +V  +L +  L+ Y+  F +   D+  +  MT EDL A+G+   G RKKI
Sbjct: 16  KSSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKI 69


>pdb|3BQ7|A Chain A, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
 pdb|3BQ7|B Chain B, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
 pdb|3BQ7|C Chain C, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
 pdb|3BQ7|D Chain D, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
 pdb|3BQ7|E Chain E, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
 pdb|3BQ7|F Chain F, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
          Length = 81

 Score = 31.2 bits (69), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE 194
           V  +L  L L +Y   F   ++  + LLH+   DLK LG+  +G  K+IL  ++
Sbjct: 15  VAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIK 68


>pdb|2EAO|A Chain A, Solution Structure Of The C-Terminal Sam-Domain Of Mouse
           Ephrin Type-B Receptor 1 Precursor (Ec 2.7.1.112)
          Length = 99

 Score = 31.2 bits (69), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 138 AETSVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKALGIPM-GPRKKILLALES 195
           A T+VD +L ++ + +Y  +F  A    +  +  MT EDL  +GI + G +KKIL ++ S
Sbjct: 21  AFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHS 80


>pdb|1B0X|A Chain A, The Crystal Structure Of An Eph Receptor Sam Domain
           Reveals A Mechanism For Modular Dimerization
          Length = 94

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 138 AETSVDGFLRSLGLEKYSITFQAE-EVDMTALLHMTDEDLKALGI-PMGPRKKILLALES 195
           A  SV  +L+++ +++Y   F A     + A++HM+ +DL  +GI  +  + KIL ++++
Sbjct: 25  AVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQA 84


>pdb|2K4P|A Chain A, Solution Structure Of Ship2-Sam
          Length = 86

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 138 AETSVDGFLRSLGLEKY--SITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILL 191
            E  +  +LR++GLE+Y   +     + D+  L  +T+EDL+  G+     K++LL
Sbjct: 25  GEAGMSAWLRAIGLERYEEGLVHNGWD-DLEFLSDITEEDLEEAGVQDPAHKRLLL 79


>pdb|2GLE|A Chain A, Solution Structure Of Neurabin Sam Domain
          Length = 74

 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP 182
           V  +L  L L++Y   F A+ +    LL +    LKALG+ 
Sbjct: 12  VSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMT 52


>pdb|2KSO|B Chain B, Epha2:ship2 Sam:sam Complex
          Length = 76

 Score = 26.9 bits (58), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 145 FLRSLGLEKY--SITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILL 191
           +LR++GLE+Y   +     + D+  L  +T+EDL+  G+     K++LL
Sbjct: 22  WLRAIGLERYEEGLVHNGWD-DLEFLSDITEEDLEEAGVQDPAHKRLLL 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,043,620
Number of Sequences: 62578
Number of extensions: 171372
Number of successful extensions: 471
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 15
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)