Query 029178
Match_columns 197
No_of_seqs 149 out of 654
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4374 RNA-binding protein Bi 99.6 1.1E-16 2.4E-21 138.0 3.9 137 47-195 62-208 (216)
2 PF00536 SAM_1: SAM domain (St 99.6 4.4E-16 9.5E-21 107.4 6.0 60 136-195 2-62 (64)
3 PF07647 SAM_2: SAM domain (St 99.6 5.1E-15 1.1E-19 102.4 5.9 61 135-195 2-64 (66)
4 cd00166 SAM Sterile alpha moti 99.5 1.2E-14 2.5E-19 97.8 5.7 60 136-195 1-61 (63)
5 smart00454 SAM Sterile alpha m 99.5 1.1E-13 2.4E-18 93.5 5.9 61 135-195 2-64 (68)
6 KOG4375 Scaffold protein Shank 98.9 3.2E-09 6.9E-14 94.4 6.5 74 122-195 195-269 (272)
7 KOG4384 Uncharacterized SAM do 98.7 1.1E-08 2.4E-13 94.0 4.9 58 138-195 214-273 (361)
8 KOG1170 Diacylglycerol kinase 98.5 6E-08 1.3E-12 97.0 3.6 68 129-196 990-1058(1099)
9 KOG0196 Tyrosine kinase, EPH ( 98.5 2.1E-07 4.6E-12 93.4 6.4 65 131-195 915-981 (996)
10 KOG3678 SARM protein (with ste 98.4 2.3E-07 5E-12 89.6 4.2 62 134-195 462-525 (832)
11 PF09597 IGR: IGR protein moti 97.5 0.00013 2.9E-09 51.7 3.7 51 142-195 1-53 (57)
12 KOG1899 LAR transmembrane tyro 97.4 0.00027 5.8E-09 70.1 5.9 62 134-195 547-610 (861)
13 KOG1899 LAR transmembrane tyro 96.7 0.0012 2.6E-08 65.6 3.2 61 134-194 620-681 (861)
14 KOG4374 RNA-binding protein Bi 95.3 0.0078 1.7E-07 52.7 1.4 60 135-194 113-174 (216)
15 KOG1738 Membrane-associated gu 94.8 0.022 4.8E-07 56.4 3.1 61 134-194 4-67 (638)
16 KOG3930 Uncharacterized conser 94.4 0.032 6.9E-07 51.9 2.9 42 153-194 20-62 (389)
17 PF09235 Ste50p-SAM: Ste50p, s 94.1 0.017 3.6E-07 43.3 0.4 49 134-182 3-55 (75)
18 KOG3791 Predicted RNA-binding 93.3 0.072 1.6E-06 52.4 3.3 57 135-193 471-528 (569)
19 cd08532 SAM_PNT-PDEF-like Ster 92.0 0.17 3.8E-06 37.5 3.2 47 130-179 6-56 (76)
20 KOG4403 Cell surface glycoprot 91.9 0.14 3E-06 49.6 3.0 56 135-190 133-194 (575)
21 cd08203 SAM_PNT Sterile alpha 91.1 0.2 4.4E-06 35.7 2.6 44 133-178 1-48 (66)
22 cd08538 SAM_PNT-ESE-2-like Ste 90.1 0.35 7.5E-06 36.3 3.2 48 131-178 4-55 (78)
23 cd08531 SAM_PNT-ERG_FLI-1 Ster 90.1 0.3 6.6E-06 36.1 2.8 47 131-179 2-53 (75)
24 cd08541 SAM_PNT-FLI-1 Sterile 89.6 0.34 7.3E-06 37.3 2.9 54 130-185 13-72 (91)
25 cd08535 SAM_PNT-Tel_Yan Steril 89.6 0.39 8.6E-06 34.9 3.0 50 133-185 2-56 (68)
26 cd08757 SAM_PNT_ESE Sterile al 89.5 0.26 5.7E-06 35.5 2.1 46 133-178 1-50 (68)
27 cd08533 SAM_PNT-ETS-1,2 Steril 89.4 0.27 5.8E-06 36.1 2.0 46 131-178 1-50 (71)
28 cd08540 SAM_PNT-ERG Sterile al 89.1 0.31 6.7E-06 36.1 2.2 46 131-178 2-52 (75)
29 smart00251 SAM_PNT SAM / Point 88.9 0.3 6.5E-06 36.4 2.1 46 131-178 14-63 (82)
30 cd08534 SAM_PNT-GABP-alpha Ste 88.2 0.5 1.1E-05 36.1 2.9 47 130-178 15-65 (89)
31 cd08536 SAM_PNT-Mae Sterile al 87.0 0.69 1.5E-05 33.4 2.9 50 133-185 1-55 (66)
32 PF02198 SAM_PNT: Sterile alph 87.0 0.17 3.7E-06 37.3 -0.3 49 130-180 13-65 (84)
33 KOG0249 LAR-interacting protei 85.5 0.34 7.3E-06 49.4 0.9 51 143-193 679-731 (916)
34 cd08543 SAM_PNT-ETS-2 Sterile 85.5 0.65 1.4E-05 35.7 2.3 47 130-178 15-65 (89)
35 cd08542 SAM_PNT-ETS-1 Sterile 84.8 0.79 1.7E-05 35.1 2.4 47 130-178 15-65 (88)
36 cd08539 SAM_PNT-ESE-3-like Ste 83.4 1.1 2.4E-05 33.4 2.6 53 132-185 3-60 (74)
37 PF13543 KSR1-SAM: SAM like do 82.7 3.3 7.2E-05 33.8 5.3 58 138-195 65-127 (129)
38 cd08537 SAM_PNT-ESE-1-like Ste 80.2 1.4 3E-05 33.3 2.2 55 131-185 7-65 (78)
39 KOG3678 SARM protein (with ste 75.5 4.1 9E-05 40.6 4.5 60 136-195 534-597 (832)
40 PF04904 NCD1: NAB conserved r 72.8 7.7 0.00017 29.6 4.4 57 139-195 9-72 (82)
41 KOG4279 Serine/threonine prote 70.9 5.5 0.00012 41.6 4.2 60 135-194 1148-1209(1226)
42 PF06568 DUF1127: Domain of un 67.5 3.7 8E-05 26.5 1.5 23 162-184 14-36 (40)
43 KOG3242 Oligoribonuclease (3'- 65.2 2.5 5.4E-05 36.9 0.5 27 12-57 28-59 (208)
44 PF07352 Phage_Mu_Gam: Bacteri 61.1 8 0.00017 31.2 2.7 43 138-182 92-137 (149)
45 KOG0199 ACK and related non-re 58.4 13 0.00028 38.8 4.2 58 138-195 8-67 (1039)
46 KOG1945 Protein phosphatase 1 47.6 16 0.00035 34.7 2.7 51 134-184 264-314 (377)
47 COG5457 Uncharacterized conser 46.2 13 0.00027 27.0 1.4 24 165-188 32-55 (63)
48 COG1153 FwdD Formylmethanofura 37.4 9.3 0.0002 31.3 -0.4 33 157-189 21-53 (128)
49 KOG0249 LAR-interacting protei 37.3 24 0.00053 36.6 2.3 64 133-196 584-651 (916)
50 TIGR00014 arsC arsenate reduct 33.9 53 0.0012 25.1 3.3 43 135-177 34-80 (114)
51 PF01698 FLO_LFY: Floricaula / 32.1 15 0.00033 35.0 0.0 40 140-179 49-89 (386)
52 KOG3835 Transcriptional corepr 28.7 69 0.0015 31.2 3.7 58 138-195 10-74 (495)
53 PF11372 DUF3173: Domain of un 26.8 70 0.0015 23.0 2.6 25 170-194 3-27 (59)
54 KOG3804 Transcription factor N 25.8 40 0.00087 32.1 1.6 51 128-178 56-110 (390)
55 PF10281 Ish1: Putative stress 24.6 56 0.0012 20.6 1.6 17 135-151 2-18 (38)
56 COG1003 GcvP Glycine cleavage 24.4 29 0.00063 34.1 0.4 30 33-62 174-204 (496)
57 KOG4177 Ankyrin [Cell wall/mem 23.7 35 0.00077 36.7 0.9 56 138-193 886-942 (1143)
58 COG2818 Tag 3-methyladenine DN 20.4 1.3E+02 0.0029 26.2 3.6 41 154-194 53-98 (188)
No 1
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=99.64 E-value=1.1e-16 Score=137.95 Aligned_cols=137 Identities=34% Similarity=0.339 Sum_probs=99.7
Q ss_pred CcccCcchhhhhhhhccccccCCCC-CCCCCCccchhhhhcCCCCCCCCCCCCCCchhHhhhhccccccccCCCCccccC
Q 029178 47 DRIVGVRDLRLKLQKKSLQQVSQSG-KGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLARKSVAVEAPEPESKRI 125 (197)
Q Consensus 47 ~~~~~~~dlr~klq~~~~~~~~~~~-~~~~~~~~DLrekLsg~~~~q~~~~~~pk~~~~~~~~~~~~~~~~ap~~~~~~~ 125 (197)
.+++|+.|||.|+++.+.- ++.| .....+|+++++.|||+++++++|+. ......+...+...+ .....
T Consensus 62 ~~r~~~k~lr~~l~~~~~g--~~~gs~~~~~~v~~s~~~ls~~~~~~~~n~~----~r~f~~pd~~~~~~~----~~~l~ 131 (216)
T KOG4374|consen 62 LRRKDPKDLRTRLTNNRSG--FQSGSWRVKKSVRESSDWLSGLTDADPKNSG----FRSFKRPDIQSLLTS----RLGLE 131 (216)
T ss_pred ccccCchhhcccccccCCC--CCCCcccccchhhhHHHHHhcccCCCccccc----chhhcCCchhhHHHH----hhccc
Confidence 3478899999998877544 4432 44446899999999999999999996 222222222221111 00111
Q ss_pred CCCCCCcccCCC--------CcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178 126 AVPASKKKDQQK--------AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES 195 (197)
Q Consensus 126 ~~~~~rk~~~~W--------~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~ 195 (197)
..-.... .+| ..+.|..||..+||++|...|..++||++.|.+||++||++|||. .|+|+||++||..
T Consensus 132 s~~~~~~--~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~ 208 (216)
T KOG4374|consen 132 SYIKEFN--LQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGK 208 (216)
T ss_pred ccchhhh--cchHhhhhcccccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhc
Confidence 1111111 122 368899999999999999999999999999999999999999997 9999999999964
No 2
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.63 E-value=4.4e-16 Score=107.37 Aligned_cols=60 Identities=43% Similarity=0.702 Sum_probs=56.9
Q ss_pred CCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178 136 QKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES 195 (197)
Q Consensus 136 ~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~ 195 (197)
.|+..+|.+||+++||++|.+.|.++.||++.|+.||++||++|||+ +|||+||+.+|+.
T Consensus 2 ~W~~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~ 62 (64)
T PF00536_consen 2 EWSVEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQK 62 (64)
T ss_dssp GTSHHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999 7999999999975
No 3
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.57 E-value=5.1e-15 Score=102.42 Aligned_cols=61 Identities=41% Similarity=0.702 Sum_probs=58.7
Q ss_pred CCCCcchHHHHHHhCCChhhHHHHhhcCcCH-HHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178 135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDM-TALLHMTDEDLKALGIP-MGPRKKILLALES 195 (197)
Q Consensus 135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDg-daLl~LTeeDLKeLGI~-lGpRKKIL~aIq~ 195 (197)
..|+..+|.+||.++||.+|.+.|.+++||+ +.|..|+++||+++||+ .|||++|+++|++
T Consensus 2 ~~w~~~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~ 64 (66)
T PF07647_consen 2 STWSPEDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQE 64 (66)
T ss_dssp GGHCHHHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999 99999999999999998 9999999999975
No 4
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.54 E-value=1.2e-14 Score=97.78 Aligned_cols=60 Identities=43% Similarity=0.638 Sum_probs=57.8
Q ss_pred CCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178 136 QKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES 195 (197)
Q Consensus 136 ~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~ 195 (197)
.|+..+|.+||+++|+++|.+.|.+++||++.|+.|+++||++|||+ +|||++|+.+|++
T Consensus 1 ~w~~~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~ 61 (63)
T cd00166 1 NWSPEDVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQK 61 (63)
T ss_pred CCCHHHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999 7999999999975
No 5
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=99.46 E-value=1.1e-13 Score=93.52 Aligned_cols=61 Identities=46% Similarity=0.700 Sum_probs=58.2
Q ss_pred CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCC-HHHHhcCCCC-cchHHHHHHHHHh
Q 029178 135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMT-DEDLKALGIP-MGPRKKILLALES 195 (197)
Q Consensus 135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LT-eeDLKeLGI~-lGpRKKIL~aIq~ 195 (197)
..|+..+|.+||..+|+++|.+.|.+++|++..|+.++ ++||++|||. +|||++|+.+|+.
T Consensus 2 ~~w~~~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~ 64 (68)
T smart00454 2 SQWSPESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQK 64 (68)
T ss_pred CCCCHHHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999 9999999997 9999999999875
No 6
>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]
Probab=98.88 E-value=3.2e-09 Score=94.38 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=66.8
Q ss_pred cccCCCCCCCcccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178 122 SKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES 195 (197)
Q Consensus 122 ~~~~~~~~~rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~ 195 (197)
..-+.+|-.-|..+-|+..+|..||++++|++|.+.|..++||+..|..|+.+|+.++|++ .|||..|-+|++.
T Consensus 195 s~~s~~pF~~Kpl~~Wsk~DV~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~LGVTRVgHRmnIerALr~ 269 (272)
T KOG4375|consen 195 NNLTYNPFLCKPLQRWSKIDVNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRGLGVTRVGHRMNIERALRQ 269 (272)
T ss_pred CCCCCCcccccccceeccccHHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhcccchhhhhHHHHHHHHHH
Confidence 3334455566778999999999999999999999999999999999999999999999999 9999999999874
No 7
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=98.73 E-value=1.1e-08 Score=94.02 Aligned_cols=58 Identities=40% Similarity=0.591 Sum_probs=55.1
Q ss_pred CcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178 138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES 195 (197)
Q Consensus 138 ~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~ 195 (197)
....|++||+.|||++|...|-++++| ++.+..++++||.++||. ++||+|||.+|+.
T Consensus 214 ~~~~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~ 273 (361)
T KOG4384|consen 214 HPKSLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVEL 273 (361)
T ss_pred CchHHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 667999999999999999999999887 999999999999999998 9999999999874
No 8
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=98.52 E-value=6e-08 Score=97.03 Aligned_cols=68 Identities=31% Similarity=0.473 Sum_probs=63.8
Q ss_pred CCCcccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHhc
Q 029178 129 ASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALESR 196 (197)
Q Consensus 129 ~~rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~~ 196 (197)
-++.....|+.++|+.||+.++|++|.+.|.+|.|.+..|++|...|||++||. .||-|+|+.+|.+.
T Consensus 990 ~~~a~~~~w~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkdl 1058 (1099)
T KOG1170|consen 990 FAFANIPYWTSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKDL 1058 (1099)
T ss_pred cccccCccccHHHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHHH
Confidence 356677899999999999999999999999999999999999999999999999 99999999999763
No 9
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.48 E-value=2.1e-07 Score=93.36 Aligned_cols=65 Identities=28% Similarity=0.457 Sum_probs=58.3
Q ss_pred CcccCCCCcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178 131 KKKDQQKAETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIP-MGPRKKILLALES 195 (197)
Q Consensus 131 rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~ 195 (197)
+..+..-...+|.+||++++|++|.++|.+.++ +++.+..|+.+||..+||+ .||+|||+.+|+.
T Consensus 915 ~~~~~~~~f~sv~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~ 981 (996)
T KOG0196|consen 915 RSGSDFTPFRSVGDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQA 981 (996)
T ss_pred CCCCCCcccCCHHHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHH
Confidence 444555577899999999999999999998765 5999999999999999999 9999999999975
No 10
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.40 E-value=2.3e-07 Score=89.59 Aligned_cols=62 Identities=31% Similarity=0.497 Sum_probs=57.4
Q ss_pred cCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHh-cCCCCcc-hHHHHHHHHHh
Q 029178 134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLK-ALGIPMG-PRKKILLALES 195 (197)
Q Consensus 134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~lG-pRKKIL~aIq~ 195 (197)
...|...+|..|++.+|+++|++.|.++.+|+|.|+.|||+||+ ++|...| |||+.++.++.
T Consensus 462 VPgWt~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqt 525 (832)
T KOG3678|consen 462 VPGWTCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQT 525 (832)
T ss_pred CCCcchHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999 9999865 99999988764
No 11
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=97.48 E-value=0.00013 Score=51.70 Aligned_cols=51 Identities=35% Similarity=0.567 Sum_probs=45.5
Q ss_pred HHHHHHhCC--ChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178 142 VDGFLRSLG--LEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALES 195 (197)
Q Consensus 142 V~~wLksLG--L~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~ 195 (197)
|..||..+| +++|.+.|.. +.+.|...+-.+||++||++-+|+-||.+.+.
T Consensus 1 V~tFL~~IGR~~~~~~~kf~~---~w~~lf~~~s~~LK~~GIp~r~RryiL~~~ek 53 (57)
T PF09597_consen 1 VETFLKLIGRGCEEHAEKFES---DWEKLFTTSSKQLKELGIPVRQRRYILRWREK 53 (57)
T ss_pred CHHHHHHHcccHHHHHHHHHH---HHHHHHhcCHHHHHHCCCCHHHHHHHHHHHHH
Confidence 578999998 8999999965 56999999999999999999999999988753
No 12
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.40 E-value=0.00027 Score=70.06 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=55.4
Q ss_pred cCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHh-cCCCC-cchHHHHHHHHHh
Q 029178 134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLK-ALGIP-MGPRKKILLALES 195 (197)
Q Consensus 134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~-lGpRKKIL~aIq~ 195 (197)
..+|..+.|+.||..+||++|.....+.--.+..|+.++..|+. ++||. +=|||||.-++++
T Consensus 547 fa~W~~EqvcnWlae~Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeLnIKhplHRKkl~lal~a 610 (861)
T KOG1899|consen 547 FADWRSEQVCNWLAEIGLGQYMNEVRRWVRSGRTFLTASPQDYEKELNIKHPLHRKKLALALRA 610 (861)
T ss_pred hhhccHHHHHHHHHHhchHHHHHHHHHHHhcCchhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Confidence 68899999999999999999998766655568999999999987 99999 9999999988764
No 13
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.69 E-value=0.0012 Score=65.58 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=53.1
Q ss_pred cCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHH
Q 029178 134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE 194 (197)
Q Consensus 134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq 194 (197)
...|++.-|-.||+.+||-+|.+.|.++.||+-.|..||-+||-+|-|. .-|-.-|-.+|+
T Consensus 620 a~klDv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvnDll~lkVvs~lHhaSlkraIq 681 (861)
T KOG1899|consen 620 ANKLDVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVNDLLELKVVSALHHASLKRAIQ 681 (861)
T ss_pred ccchhHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999997 555555555554
No 14
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=95.31 E-value=0.0078 Score=52.71 Aligned_cols=60 Identities=32% Similarity=0.507 Sum_probs=54.3
Q ss_pred CCCCcchHHHHHHh-CCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHH
Q 029178 135 QQKAETSVDGFLRS-LGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE 194 (197)
Q Consensus 135 ~~W~~~~V~~wLks-LGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq 194 (197)
.....++..+++.+ ++|+.|...|..++|++..+.++++++|+.+|+. +|.+.+++.+++
T Consensus 113 r~f~~pd~~~~~~~~~~l~s~~~~~~~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~e 174 (216)
T KOG4374|consen 113 RSFKRPDIQSLLTSRLGLESYIKEFNLQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIE 174 (216)
T ss_pred hhhcCCchhhHHHHhhcccccchhhhcchHhhhhcccccchHHHHHHHHhHHHHHHHHHHHH
Confidence 44456778888888 9999999999999999999999999999999998 999999998875
No 15
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.022 Score=56.42 Aligned_cols=61 Identities=25% Similarity=0.442 Sum_probs=57.4
Q ss_pred cCCCCcchHHHHHHhCC--ChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHH
Q 029178 134 DQQKAETSVDGFLRSLG--LEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE 194 (197)
Q Consensus 134 ~~~W~~~~V~~wLksLG--L~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq 194 (197)
...|+...|+.|++.++ |..|...|.++.+.+..|+.++..+|..||+. .||+..|+.+..
T Consensus 4 v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~lg~rrig~qeli~~av~ 67 (638)
T KOG1738|consen 4 VETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLETLGVRRIGHQELILEAVE 67 (638)
T ss_pred ccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHHHhhhhhhhHHHHHHHHH
Confidence 57899999999999998 89999999999999999999999999999999 999999987764
No 16
>KOG3930 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.032 Score=51.90 Aligned_cols=42 Identities=29% Similarity=0.532 Sum_probs=40.1
Q ss_pred hhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHH
Q 029178 153 KYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE 194 (197)
Q Consensus 153 kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq 194 (197)
.|.-.|..|.|.-+.|+.|+.+-|.||||+ +|+...||+.++
T Consensus 20 ~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K 62 (389)
T KOG3930|consen 20 KYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIK 62 (389)
T ss_pred hHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHH
Confidence 699999999999999999999999999999 999999998775
No 17
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=94.09 E-value=0.017 Score=43.29 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=37.2
Q ss_pred cCCCCcchHHHHH-HhCCChh---hHHHHhhcCcCHHHhcCCCHHHHhcCCCC
Q 029178 134 DQQKAETSVDGFL-RSLGLEK---YSITFQAEEVDMTALLHMTDEDLKALGIP 182 (197)
Q Consensus 134 ~~~W~~~~V~~wL-ksLGL~k---Y~~~F~~eeIDgdaLl~LTeeDLKeLGI~ 182 (197)
..+|+..+|..|+ .+|++.+ ++..|.+|.|+|+.|..||-+|=|++==.
T Consensus 3 ~~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLtl~DCKeLc~~ 55 (75)
T PF09235_consen 3 FSNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELTLEDCKELCDN 55 (75)
T ss_dssp TTT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHHHHHHHHCTTS
T ss_pred cccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhccHHHHHHHcCc
Confidence 4689999999999 5678764 78889999999999999999999986443
No 18
>KOG3791 consensus Predicted RNA-binding protein involved in translational regulation [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=93.35 E-value=0.072 Score=52.39 Aligned_cols=57 Identities=28% Similarity=0.528 Sum_probs=50.6
Q ss_pred CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHH
Q 029178 135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLAL 193 (197)
Q Consensus 135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aI 193 (197)
..-...++..||+.++|-+|.+.|.. .++++++.+++.+|...||. .|-|+++|++-
T Consensus 471 ~~~~~~~ip~WLkslrlhKyt~~~~~--t~~~e~l~ls~~~l~~~Gv~a~g~~~~~L~~~ 528 (569)
T KOG3791|consen 471 KNPLRIEIPEWLKSLRLHKYTNALKS--TTWFELLILSDMKLQHVGVLALGARRKLLKAF 528 (569)
T ss_pred CccccccchHHHHhccchhhhccccC--ccHHHhhccchhhcccchhhhhhHHHhhhccc
Confidence 33355788899999999999999987 99999999999999999998 99999998753
No 19
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=92.03 E-value=0.17 Score=37.51 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=37.6
Q ss_pred CCcccCCCCcchHHHHH----HhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcC
Q 029178 130 SKKKDQQKAETSVDGFL----RSLGLEKYSITFQAEEVDMTALLHMTDEDLKAL 179 (197)
Q Consensus 130 ~rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeL 179 (197)
-+.++..|+...|..|| ++.+|.. .+..=.+||.+|+.||.+|+...
T Consensus 6 ip~DP~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~edF~~r 56 (76)
T cd08532 6 ISPDPYQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEEDFRRR 56 (76)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHHHHHHH
Confidence 35678999999999999 4556766 44444899999999999997753
No 20
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=91.86 E-value=0.14 Score=49.64 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=48.7
Q ss_pred CCCCcchHHHHH-HhCCChhhHHHHhhcCcCHHHhcCC--CHHH--HhcCCCC-cchHHHHH
Q 029178 135 QQKAETSVDGFL-RSLGLEKYSITFQAEEVDMTALLHM--TDED--LKALGIP-MGPRKKIL 190 (197)
Q Consensus 135 ~~W~~~~V~~wL-ksLGL~kY~~~F~~eeIDgdaLl~L--TeeD--LKeLGI~-lGpRKKIL 190 (197)
-.|+.+.+.+|| ....|.+|.+.|..+.|+|.+|..+ +..| -+.+||. ..||.||-
T Consensus 133 ~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgikd~~hrQKlq 194 (575)
T KOG4403|consen 133 HNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGIKDRSHRQKLQ 194 (575)
T ss_pred hcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCchHHhhhhhccCchHHHHhhh
Confidence 579999999999 6779999999999999999999987 4555 3499999 99999974
No 21
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=91.12 E-value=0.2 Score=35.71 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=33.9
Q ss_pred ccCCCCcchHHHHHHh----CCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 133 KDQQKAETSVDGFLRS----LGLEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 133 ~~~~W~~~~V~~wLks----LGL~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
++..|+...|..||.- .+|.. ..+..-.+||..|+.||.+|+.+
T Consensus 1 dP~~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~edF~~ 48 (66)
T cd08203 1 DPRLWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTKEDFLR 48 (66)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCHHHHHH
Confidence 4678999999999954 45654 23333489999999999999775
No 22
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=90.09 E-value=0.35 Score=36.32 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=38.1
Q ss_pred CcccCCCCcchHHHHH----HhCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 131 KKKDQQKAETSVDGFL----RSLGLEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 131 rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
.+++..|+...|..|| +.-+|..-...|..=.|||..|+.|+.+|+.+
T Consensus 4 ~~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~ 55 (78)
T cd08538 4 SVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIE 55 (78)
T ss_pred CCCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHH
Confidence 5788999999999999 45566543345555589999999999999765
No 23
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=90.08 E-value=0.3 Score=36.10 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=35.9
Q ss_pred CcccCCCCcchHHHHH----HhCCChhhHHHHhh-cCcCHHHhcCCCHHHHhcC
Q 029178 131 KKKDQQKAETSVDGFL----RSLGLEKYSITFQA-EEVDMTALLHMTDEDLKAL 179 (197)
Q Consensus 131 rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~-eeIDgdaLl~LTeeDLKeL 179 (197)
+.++..|+...|..|| ++.+|.. . .+.. ..+||.+|+.||.+|+...
T Consensus 2 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~-i-~~~~F~~m~Gk~LC~lt~edF~~~ 53 (75)
T cd08531 2 PADPTLWTREHVRQWLEWAVKEYGLQD-V-DVSRFQNIDGKELCKMTKEDFLRL 53 (75)
T ss_pred CCChhhcCHHHHHHHHHHHHHHcCCCC-C-ChhhccCCChHHHHcCCHHHHHHH
Confidence 4678899999999999 4556633 1 2333 3799999999999998764
No 24
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=89.63 E-value=0.34 Score=37.33 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=38.7
Q ss_pred CCcccCCCCcchHHHHH----HhCCChhhHHHHhh-cCcCHHHhcCCCHHHHhcCCCC-cch
Q 029178 130 SKKKDQQKAETSVDGFL----RSLGLEKYSITFQA-EEVDMTALLHMTDEDLKALGIP-MGP 185 (197)
Q Consensus 130 ~rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~-eeIDgdaLl~LTeeDLKeLGI~-lGp 185 (197)
-++++..|+...|..|| +..+|.. ..+.. +.++|.+|+.|+.+|+.++.-+ .|+
T Consensus 13 IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~--vd~~~F~~m~Gk~LC~LskedF~~~~p~~~gd 72 (91)
T cd08541 13 VPADPTLWTQEHVRQWLEWAIKEYGLME--IDTSFFQNMDGKELCKMNKEDFLRATSLYNTE 72 (91)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHcCCCC--CChhhccCCCHHHHHhCCHHHHHHHcCCCccH
Confidence 35678899999999999 4556642 22222 2699999999999998765433 453
No 25
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=89.57 E-value=0.39 Score=34.87 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=35.9
Q ss_pred ccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cch
Q 029178 133 KDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGP 185 (197)
Q Consensus 133 ~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGp 185 (197)
++..|+...|..||. +.+|.. ..+..=.+||.+|+.|+.+|+... ++ .|+
T Consensus 2 DP~~Wt~~~V~~WL~wa~~ef~L~~--i~~~~F~mnGk~LC~ls~edF~~r-~p~~Gd 56 (68)
T cd08535 2 QPRYWSRDDVLQWLRWAENEFSLPP--IDSNTFEMNGKALCLLTKEDFRYR-SPHSGD 56 (68)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCC--CChhccCCCHHHHhcCCHHHHhhh-CCCchH
Confidence 578899999999995 444533 123333799999999999997743 44 554
No 26
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=89.54 E-value=0.26 Score=35.48 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=33.2
Q ss_pred ccCCCCcchHHHHHHh----CCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 133 KDQQKAETSVDGFLRS----LGLEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 133 ~~~~W~~~~V~~wLks----LGL~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
++..|+...|..||.- .+|..-...|..=.+||.+|+.||.+|+.+
T Consensus 1 dP~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~ 50 (68)
T cd08757 1 HPQYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFRE 50 (68)
T ss_pred CHhhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHH
Confidence 4678999999999962 334331122333389999999999999775
No 27
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=89.35 E-value=0.27 Score=36.13 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=34.7
Q ss_pred CcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 131 KKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 131 rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
++++..|+...|..||+ +.+|.. ..+..=.++|.+|+.||.+|...
T Consensus 1 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~--v~~~~F~m~Gk~LC~ls~edF~~ 50 (71)
T cd08533 1 PKDPRLWTETHVRQWLLWAVNEFSLEG--VNFQKFCMSGRDLCALGKERFLE 50 (71)
T ss_pred CcChhhCCHHHHHHHHHHHHHHcCCCC--CCcccCCCCHHHHHcCCHHHHHH
Confidence 46788999999999994 445542 12333379999999999999765
No 28
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=89.07 E-value=0.31 Score=36.14 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=35.1
Q ss_pred CcccCCCCcchHHHHHH----hCCChhhHHHHhh-cCcCHHHhcCCCHHHHhc
Q 029178 131 KKKDQQKAETSVDGFLR----SLGLEKYSITFQA-EEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 131 rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~-eeIDgdaLl~LTeeDLKe 178 (197)
++++..|+...|.+||+ ..+|..- + +.. ..++|.+|+.||.+|+.+
T Consensus 2 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~~-~-~~~F~~m~Gk~LC~LskedF~~ 52 (75)
T cd08540 2 PADPTLWSTDHVRQWLEWAVKEYGLPDV-D-VLLFQNIDGKELCKMTKDDFQR 52 (75)
T ss_pred CCChhhcCHHHHHHHHHHHHHHhCCCCC-C-cccccCCCHHHHHhCCHHHHHH
Confidence 56789999999999994 5556442 2 333 359999999999999765
No 29
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=88.94 E-value=0.3 Score=36.40 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=34.2
Q ss_pred CcccCCCCcchHHHHHHh----CCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 131 KKKDQQKAETSVDGFLRS----LGLEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 131 rk~~~~W~~~~V~~wLks----LGL~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
++++..|+...|..||.- .+|..- .|..-.++|.+|+.|+.+|+..
T Consensus 14 p~dP~~Wt~~~V~~Wl~w~~~ef~L~~~--~~~~f~m~G~~Lc~ls~edF~~ 63 (82)
T smart00251 14 PADPQLWTEDHVLEWLEWAVKEFSLSPI--DFSKFDMSGKELCSMSKEEFLE 63 (82)
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCCC--CcccCCCCHHHHHcCCHHHHHH
Confidence 457899999999999954 344321 1333379999999999999774
No 30
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=88.21 E-value=0.5 Score=36.14 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=35.9
Q ss_pred CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
-+.++..|+...|..||. ..+|..- .+..=.++|.+|+.||.+|+..
T Consensus 15 IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~Ls~edF~~ 65 (89)
T cd08534 15 IPYDPMEWTEDQVLHWVVWAVKEFSLTDI--DLSDWNITGRELCSLTQEEFFQ 65 (89)
T ss_pred CCCChHHcCHHHHHHHHHHHHHHcCCCCC--ChhhcCCCHHHHhcCCHHHHHH
Confidence 356788999999999994 4556432 2333478999999999999764
No 31
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=87.03 E-value=0.69 Score=33.38 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=35.5
Q ss_pred ccCCCCcchHHHHHHh----CCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cch
Q 029178 133 KDQQKAETSVDGFLRS----LGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGP 185 (197)
Q Consensus 133 ~~~~W~~~~V~~wLks----LGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGp 185 (197)
++..|+...|..||.- -+|..- .+..=.++|.+|+.|+.+|.... +| .|+
T Consensus 1 DP~~Ws~~~V~~WL~w~~~ef~L~~~--~~~~F~m~Gk~LC~ls~edF~~r-~P~~Gd 55 (66)
T cd08536 1 DPRSWSREHVRTWLRWVSARYQLEVV--DLDKFLMNGKGLCLMSLEGFLYR-VPVGGK 55 (66)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCC--CccccCCCHHHHHcCCHHHHHhh-cCCccH
Confidence 4678999999999954 455441 22333689999999999997653 44 453
No 32
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=87.00 E-value=0.17 Score=37.32 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCC
Q 029178 130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKALG 180 (197)
Q Consensus 130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLG 180 (197)
-++++..|+..+|..||. ..++.. ..|..=.+||..|+.||.+|+.+..
T Consensus 13 ~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~--~~~~~f~~~G~~Lc~lt~e~F~~~~ 65 (84)
T PF02198_consen 13 LPKDPRLWTKEDVLQWLRWVVREFDLPA--IDFSRFNMNGRELCSLTKEDFRRRF 65 (84)
T ss_dssp SCSSGGG--HHHHHHHHHHHHHHTT-SS--CHGGGGTS-HHHHHHSHHHHHHHHS
T ss_pred CCCChhhCCHHHHHHHHHHHHHhcCCCc--CchhccCCCHHHHHHcCHHHHHHHc
Confidence 356889999999999995 333322 2244447999999999999988643
No 33
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.55 E-value=0.34 Score=49.42 Aligned_cols=51 Identities=29% Similarity=0.422 Sum_probs=44.2
Q ss_pred HHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHh-cCCCC-cchHHHHHHHH
Q 029178 143 DGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLK-ALGIP-MGPRKKILLAL 193 (197)
Q Consensus 143 ~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~-lGpRKKIL~aI 193 (197)
-+||.+|||.+|...|.+--+|.-.|-||+..||+ .+++. -=||--|...|
T Consensus 679 neWLPslGLpQYrsyFme~LvDARMLdhLsKkdLr~~LkmvdsFHr~Sl~yGI 731 (916)
T KOG0249|consen 679 NEWLPSLGLPQYRSYFMECLVDARMLDHLSKKDLRGHLKMVDSFHRTSLQYGI 731 (916)
T ss_pred cccccccCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46999999999999999999999999999999998 77776 56777666555
No 34
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=85.48 E-value=0.65 Score=35.66 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
-++++..|+...|..||. ..+|.. ..|..=.++|.+|+.|+.+|+..
T Consensus 15 Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~--i~~~~F~m~Gk~LC~Ls~edF~~ 65 (89)
T cd08543 15 IPKNPWLWTEQQVCQWLLWATNEFSLVN--VNFQQFGMNGQELCNLGKERFLE 65 (89)
T ss_pred CCCChhhCCHHHHHHHHHHHHHHcCCCC--CCcccCCCChHHHHcCCHHHHHh
Confidence 456788999999999995 444543 12222369999999999999764
No 35
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=84.81 E-value=0.79 Score=35.11 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=34.8
Q ss_pred CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
-+.++..|+...|..||. ..+|..- .|..=.++|.+|+.|+.+|...
T Consensus 15 Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i--~~~~F~m~Gk~LC~Ls~edF~~ 65 (88)
T cd08542 15 IPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMNGAALCALGKECFLE 65 (88)
T ss_pred CCCChhhCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCHHHHHh
Confidence 456788999999999994 4455422 2222259999999999999765
No 36
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=83.37 E-value=1.1 Score=33.42 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=40.2
Q ss_pred cccCCCCcchHHHHHHhC----CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cch
Q 029178 132 KKDQQKAETSVDGFLRSL----GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGP 185 (197)
Q Consensus 132 k~~~~W~~~~V~~wLksL----GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGp 185 (197)
-+++.|+...|.+||.-. .++--...|.+=.++|.+|+.|+.+++. .-.+ .|+
T Consensus 3 ~~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~-~~~p~~Gd 60 (74)
T cd08539 3 IHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFT-RAAGTAGQ 60 (74)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHh-hcCCchHH
Confidence 457899999999999655 4444444677778999999999999977 3344 554
No 37
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=82.70 E-value=3.3 Score=33.76 Aligned_cols=58 Identities=28% Similarity=0.393 Sum_probs=47.1
Q ss_pred CcchHHHHHHhCCChh-hHHHHhhcCcCHHHhcCCCHHHHh----cCCCCcchHHHHHHHHHh
Q 029178 138 AETSVDGFLRSLGLEK-YSITFQAEEVDMTALLHMTDEDLK----ALGIPMGPRKKILLALES 195 (197)
Q Consensus 138 ~~~~V~~wLksLGL~k-Y~~~F~~eeIDgdaLl~LTeeDLK----eLGI~lGpRKKIL~aIq~ 195 (197)
..+.+..||+-.|+.. .....-....++++|+.|+|++++ +.|..-+...++..|+..
T Consensus 65 ~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~ 127 (129)
T PF13543_consen 65 SYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSN 127 (129)
T ss_pred cCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4589999999999965 556555678899999999999977 557777788888888753
No 38
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=80.25 E-value=1.4 Score=33.32 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=40.2
Q ss_pred CcccCCCCcchHHHHHHhCC----ChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcch
Q 029178 131 KKKDQQKAETSVDGFLRSLG----LEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGP 185 (197)
Q Consensus 131 rk~~~~W~~~~V~~wLksLG----L~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGp 185 (197)
..+++.|+...|.+||.-.= ++--...|.+=.+||.+|+.|+.+++.++-.+.|+
T Consensus 7 ~~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p~Gd 65 (78)
T cd08537 7 GEEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALDQMRLVFGPLGD 65 (78)
T ss_pred CCCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHHHHHHHcCChHH
Confidence 45689999999999996431 22223345556899999999999998765555665
No 39
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=75.47 E-value=4.1 Score=40.65 Aligned_cols=60 Identities=32% Similarity=0.427 Sum_probs=52.3
Q ss_pred CCCcchHHHHHHhCC--ChhhHHHHhhcCcCHHHhcCCCHHHHh-cCCCC-cchHHHHHHHHHh
Q 029178 136 QKAETSVDGFLRSLG--LEKYSITFQAEEVDMTALLHMTDEDLK-ALGIP-MGPRKKILLALES 195 (197)
Q Consensus 136 ~W~~~~V~~wLksLG--L~kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~-lGpRKKIL~aIq~ 195 (197)
..+.+.+++||-.|. |..|-=....+++|-..|..+|++-+. +-||+ +-||.||+.+.+.
T Consensus 534 s~DeSNLdn~L~gLsPels~YTY~mlt~GvnRSLLssltde~m~naCGI~~~iHR~kl~qA~et 597 (832)
T KOG3678|consen 534 SVDESNLDNFLMGLSPELSVYTYQMLTNGVNRSLLSSLTDEMMQNACGITNPIHRLKLTQAFET 597 (832)
T ss_pred ccchhhHHHHHhcCChhHHHHhHHHhhccccHHHHHHhhHHHHHHhcCccchHHHHHHHHHHHh
Confidence 346789999999987 788988889999999999999999965 88999 7799999988764
No 40
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.79 E-value=7.7 Score=29.60 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=45.3
Q ss_pred cchHHHHHHhCCChhhHHHHhhc-CcCHHHhcCCCHHHHhc----CCCC--cchHHHHHHHHHh
Q 029178 139 ETSVDGFLRSLGLEKYSITFQAE-EVDMTALLHMTDEDLKA----LGIP--MGPRKKILLALES 195 (197)
Q Consensus 139 ~~~V~~wLksLGL~kY~~~F~~e-eIDgdaLl~LTeeDLKe----LGI~--lGpRKKIL~aIq~ 195 (197)
.-.+-..|++-.|-.|.+.|.+. +-|.+.|+...++|+.+ .|.. +=|-+|+.+++++
T Consensus 9 elqly~vLqrAnLl~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~e 72 (82)
T PF04904_consen 9 ELQLYRVLQRANLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE 72 (82)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHHH
Confidence 34566778999999999999886 45688999999999654 4665 7788888888765
No 41
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.95 E-value=5.5 Score=41.63 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=48.6
Q ss_pred CCCCcchHHHHHHhCCChhhHHH-HhhcCcCHHH-hcCCCHHHHhcCCCCcchHHHHHHHHH
Q 029178 135 QQKAETSVDGFLRSLGLEKYSIT-FQAEEVDMTA-LLHMTDEDLKALGIPMGPRKKILLALE 194 (197)
Q Consensus 135 ~~W~~~~V~~wLksLGL~kY~~~-F~~eeIDgda-Ll~LTeeDLKeLGI~lGpRKKIL~aIq 194 (197)
..-.++.+.+||+.++..+.... |..|.++++. |-.+|.+||..+|+.-|---+|.++|-
T Consensus 1148 ~~~~DeeL~qWL~~~~iDe~si~lilne~fT~~d~l~yvtrddL~~l~lrgGm~criwraIi 1209 (1226)
T KOG4279|consen 1148 ALSTDEELVQWLRGLEIDERSIALILNEAFTLSDMLYYVTRDDLLSLGLRGGMSCRIWRAII 1209 (1226)
T ss_pred cccchHHHHHHHHhcCCchHHHHHHHhccccHHHHHHHhhHhhHhhhcccCceeehHHHHHH
Confidence 45588999999999999775554 5667888655 666899999999999888888888873
No 42
>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
Probab=67.46 E-value=3.7 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=19.2
Q ss_pred CcCHHHhcCCCHHHHhcCCCCcc
Q 029178 162 EVDMTALLHMTDEDLKALGIPMG 184 (197)
Q Consensus 162 eIDgdaLl~LTeeDLKeLGI~lG 184 (197)
.-+...|..|++..|+++||+-+
T Consensus 14 rrtr~~L~~Lsd~~L~DIGl~R~ 36 (40)
T PF06568_consen 14 RRTRRELAELSDRQLADIGLTRS 36 (40)
T ss_pred HHHHHHHccCCHHHHHHcCCCHH
Confidence 34567899999999999999844
No 43
>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification]
Probab=65.20 E-value=2.5 Score=36.89 Aligned_cols=27 Identities=48% Similarity=0.944 Sum_probs=18.7
Q ss_pred eEeeecCCCccchhhhhHHHhhhhhchhhhh-----hcccCcccCcchhhh
Q 029178 12 QVWIDCEPGTKNCCYSWMQLISSLIGFDCVL-----MACEDRIVGVRDLRL 57 (197)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dlr~ 57 (197)
-|||||| .||.|+.- ++| -|+-.||+-
T Consensus 28 lVWiD~E----------------MTGLdvekd~i~Eiac---IITD~dL~~ 59 (208)
T KOG3242|consen 28 LVWIDCE----------------MTGLDVEKDRIIEIAC---IITDGDLNP 59 (208)
T ss_pred eEEEeee----------------ccccccccceeEEEEE---EEecCCccc
Confidence 3999999 36777654 677 466667654
No 44
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=61.09 E-value=8 Score=31.17 Aligned_cols=43 Identities=33% Similarity=0.407 Sum_probs=27.7
Q ss_pred CcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCH---HHHhcCCCC
Q 029178 138 AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTD---EDLKALGIP 182 (197)
Q Consensus 138 ~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTe---eDLKeLGI~ 182 (197)
+...|..||++.||.+|..+ ++++|.++|....+ +.+.-.||.
T Consensus 92 ~~~~vl~~Lk~~gl~~~Ir~--keev~k~alk~~~~~~~~~~~v~Gv~ 137 (149)
T PF07352_consen 92 DEEKVLEWLKENGLKEFIRT--KEEVDKEALKKEPDVDEDGEIVPGVT 137 (149)
T ss_dssp -HHHHHHHHHHCT-GCC----------HHHHTTS-H---HHHHHTT--
T ss_pred CHHHHHHHHHHcCchhhEEe--eeecCHHHHhcCcccccccceeCCeE
Confidence 67899999999999888554 68999999999999 888888987
No 45
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=58.36 E-value=13 Score=38.81 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=46.9
Q ss_pred CcchHHHHHHhCCChhhHHHHhhc-Cc-CHHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178 138 AETSVDGFLRSLGLEKYSITFQAE-EV-DMTALLHMTDEDLKALGIPMGPRKKILLALES 195 (197)
Q Consensus 138 ~~~~V~~wLksLGL~kY~~~F~~e-eI-DgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~ 195 (197)
.+..|-+.|+...|.+|.-.|.+. .+ ..+.|.+..++||.++|..--.+++|-.+|.+
T Consensus 8 gd~wLleLLr~aqL~qf~s~lr~~lnvrr~~hf~yVk~eDLl~IGMgRp~qRRLrea~kk 67 (1039)
T KOG0199|consen 8 GDDWLLELLRKAQLDQFISQLRFLLNVRRFDHFSYVKDEDLLEIGMGRPQQRRLREAIKK 67 (1039)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhcchhhhhhhccCcHHHHHHHHHHHH
Confidence 466788899999999999999875 44 58999999999999999984455566666654
No 46
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=47.58 E-value=16 Score=34.73 Aligned_cols=51 Identities=27% Similarity=0.242 Sum_probs=47.3
Q ss_pred cCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcc
Q 029178 134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMG 184 (197)
Q Consensus 134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lG 184 (197)
...|....+.-|+.++.+++|...|..++++...|..+....++-||-+-+
T Consensus 264 l~~~~k~q~~~~~~s~~kei~a~e~a~q~~~~y~L~q~q~~~k~~L~~tk~ 314 (377)
T KOG1945|consen 264 LVTWKKQQVYHWLLSLNKEIYAQEFAAQEQAGYQLLQLQGRKKKLLGRTKS 314 (377)
T ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHHHhhcccchhhccchHHHHHhhcccc
Confidence 377889999999999999999999999999999999999999999999844
No 47
>COG5457 Uncharacterized conserved small protein [Function unknown]
Probab=46.22 E-value=13 Score=27.04 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHhcCCCHHHHhcCCCCcchHHH
Q 029178 165 MTALLHMTDEDLKALGIPMGPRKK 188 (197)
Q Consensus 165 gdaLl~LTeeDLKeLGI~lGpRKK 188 (197)
--+|..|+++.|+++||+-.+...
T Consensus 32 r~eL~~lsd~~L~DiGisR~d~~~ 55 (63)
T COG5457 32 RRELLRLSDHLLSDIGISRADIEA 55 (63)
T ss_pred HHHHHHHhHHHHHHcCCCHHHHHH
Confidence 346888999999999999544433
No 48
>COG1153 FwdD Formylmethanofuran dehydrogenase subunit D [Energy production and conversion]
Probab=37.36 E-value=9.3 Score=31.33 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=27.3
Q ss_pred HHhhcCcCHHHhcCCCHHHHhcCCCCcchHHHH
Q 029178 157 TFQAEEVDMTALLHMTDEDLKALGIPMGPRKKI 189 (197)
Q Consensus 157 ~F~~eeIDgdaLl~LTeeDLKeLGI~lGpRKKI 189 (197)
.|.++.+|..+.+.|+++|++.||++-|++-|+
T Consensus 21 K~~~~Y~~a~a~~~inp~D~~~Lgv~EGD~VkV 53 (128)
T COG1153 21 KFTDEYFNACAVCEINPEDMKQLGVSEGDKVKV 53 (128)
T ss_pred cchhhhhhheeEEEECHHHHHHhCCCcCCeEEE
Confidence 466677888889999999999999998876543
No 49
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.25 E-value=24 Score=36.59 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=55.7
Q ss_pred ccCCCCcchHHHHHHh-CCCh-hhHHHHhhcCcCHHHhcCCCHHHHh-cCCCC-cchHHHHHHHHHhc
Q 029178 133 KDQQKAETSVDGFLRS-LGLE-KYSITFQAEEVDMTALLHMTDEDLK-ALGIP-MGPRKKILLALESR 196 (197)
Q Consensus 133 ~~~~W~~~~V~~wLks-LGL~-kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~-lGpRKKIL~aIq~~ 196 (197)
+.-.|.-+.|..||+- +|+- .|...+..+--.+..+..+++-.+. ++||. +-||+|+--+|++.
T Consensus 584 p~~~w~~p~vvawlel~vgmpa~yva~c~~nVksg~im~~lsd~eiq~~igisnplhrlklrLaiqe~ 651 (916)
T KOG0249|consen 584 PFAQWDGPTVVAWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEM 651 (916)
T ss_pred chhhcCCCeeeehhhHHhccHHHHHHHHHHHhhhhHHHHhhhhHHHHhhhcccchhhhhhhHHHHHHH
Confidence 3478999999999975 5875 8999999988889999999999977 99998 99999999888763
No 50
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=33.95 E-value=53 Score=25.13 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=28.8
Q ss_pred CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHh----cCCCHHHHh
Q 029178 135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTAL----LHMTDEDLK 177 (197)
Q Consensus 135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaL----l~LTeeDLK 177 (197)
.+++...+..||+.+|+..|.+.|...+.+...| ..++++++.
T Consensus 34 ~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~~~ls~~e~i 80 (114)
T TIGR00014 34 NPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSDPNLSDQELL 80 (114)
T ss_pred CCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCccCCCHHHHH
Confidence 3468899999999999876666776555444333 245666543
No 51
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=32.05 E-value=15 Score=35.00 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=0.0
Q ss_pred chHHHHHHhCCChhhHHHH-hhcCcCHHHhcCCCHHHHhcC
Q 029178 140 TSVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKAL 179 (197)
Q Consensus 140 ~~V~~wLksLGL~kY~~~F-~~eeIDgdaLl~LTeeDLKeL 179 (197)
..|.++++.-|.--|--.= .+=+++...|+.|+|++|.+|
T Consensus 49 ~~LEdLF~~YGVRy~T~AKIaElGFTvsTLl~M~deELDdm 89 (386)
T PF01698_consen 49 RGLEDLFQGYGVRYYTAAKIAELGFTVSTLLNMTDEELDDM 89 (386)
T ss_dssp -----------------------------------------
T ss_pred hhHHHHHhhccccHHHHHHHHHhcccHHHHhcccHHHHHHH
Confidence 3667777777764342222 233789999999999999986
No 52
>KOG3835 consensus Transcriptional corepressor NAB1 [Transcription]
Probab=28.68 E-value=69 Score=31.18 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=45.1
Q ss_pred CcchHHHHHHhCCChhhHHHHhhc-CcCHHHhcCCCHHHHhc----CCCC--cchHHHHHHHHHh
Q 029178 138 AETSVDGFLRSLGLEKYSITFQAE-EVDMTALLHMTDEDLKA----LGIP--MGPRKKILLALES 195 (197)
Q Consensus 138 ~~~~V~~wLksLGL~kY~~~F~~e-eIDgdaLl~LTeeDLKe----LGI~--lGpRKKIL~aIq~ 195 (197)
..-.+-..|+.-+|-.|.+.|.++ +-|...|+...|++.-+ .|.. +=|-+++.+++++
T Consensus 10 gElQLyrVLqkANLlsYyd~FIqQGGDDvqQlceagEeEFLEIMaLVGMa~KPLHVRRlQkALre 74 (495)
T KOG3835|consen 10 GELQLYRVLQKANLLSYYDVFIQQGGDDVQQLCEAGEEEFLEIMALVGMAPKPLHVRRLQKALRE 74 (495)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHhhHHHHHHHHHHhccCCcchhHHHHHHHHHH
Confidence 344677789999999999999876 56688899999998443 3554 6788888888875
No 53
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.78 E-value=70 Score=22.96 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCCHHHHhcCCCCcchHHHHHHHHH
Q 029178 170 HMTDEDLKALGIPMGPRKKILLALE 194 (197)
Q Consensus 170 ~LTeeDLKeLGI~lGpRKKIL~aIq 194 (197)
++|.+||-+||.+.+.-++|++..+
T Consensus 3 tv~k~dLi~lGf~~~tA~~IIrqAK 27 (59)
T PF11372_consen 3 TVTKKDLIELGFSESTARDIIRQAK 27 (59)
T ss_pred ccCHHHHHHcCCCHHHHHHHHHHHH
Confidence 5789999999999888888887654
No 54
>KOG3804 consensus Transcription factor NERF and related proteins, contain ETS domain [Transcription]
Probab=25.79 E-value=40 Score=32.12 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=40.6
Q ss_pred CCCCcccCCCCcchHHHHHHhCC----ChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178 128 PASKKKDQQKAETSVDGFLRSLG----LEKYSITFQAEEVDMTALLHMTDEDLKA 178 (197)
Q Consensus 128 ~~~rk~~~~W~~~~V~~wLksLG----L~kY~~~F~~eeIDgdaLl~LTeeDLKe 178 (197)
..-.+++..|...+|..||.... +......|.+-+|++..|+.++++|+..
T Consensus 56 ~~l~~~p~~W~rd~v~~~l~~~~~~~sl~~~~~~~~~f~m~g~~L~~~te~d~~~ 110 (390)
T KOG3804|consen 56 ATLSVEPSLWSRDDVLEWLSFAEAEFSLPANCIAFPRFDINGNALCSSTEEDFRV 110 (390)
T ss_pred cccccCcccccccchhHHHHHHHHhccCCcccccccccCCCcchhccccHHHhhh
Confidence 34577789999999999997664 4445666666688899999999999774
No 55
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.56 E-value=56 Score=20.60 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=13.8
Q ss_pred CCCCcchHHHHHHhCCC
Q 029178 135 QQKAETSVDGFLRSLGL 151 (197)
Q Consensus 135 ~~W~~~~V~~wLksLGL 151 (197)
..|+..++..||++-|.
T Consensus 2 dtWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 46889999999988665
No 56
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=24.40 E-value=29 Score=34.09 Aligned_cols=30 Identities=33% Similarity=0.671 Sum_probs=26.2
Q ss_pred hhhhchhhhhhcc-cCcccCcchhhhhhhhc
Q 029178 33 SSLIGFDCVLMAC-EDRIVGVRDLRLKLQKK 62 (197)
Q Consensus 33 ~~~~~~~~~~~~~-~~~~~~~~dlr~klq~~ 62 (197)
.++.||+.|...| ++-.||-+|||-|+-.+
T Consensus 174 Aam~G~~VV~V~~~~~G~VDlddLk~k~~~~ 204 (496)
T COG1003 174 AAMAGFKVVVVKCDENGNVDLDDLRAKAEDN 204 (496)
T ss_pred HhhcCceEEEEecCCCCCccHHHHHHHhccc
Confidence 3488999999999 88899999999998744
No 57
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=23.71 E-value=35 Score=36.71 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=49.3
Q ss_pred CcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHH
Q 029178 138 AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLAL 193 (197)
Q Consensus 138 ~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aI 193 (197)
.......|.+..++.+-...|+.+.++.+.+..|-.+.++.++|. +++|++.++.+
T Consensus 886 ~~~~~~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~r~~~~~~~ 942 (1143)
T KOG4177|consen 886 VPLVQAVFPENALTKRIRVSLQAQPVPLEVVTKLLGNKATFSPIVTVEPRRRKFHKP 942 (1143)
T ss_pred cceehhhcCCCcchHHHHHHHhcccccHHHHHHhcCCcccccceeeecchHHHhhhh
Confidence 455667778888888899999999999999999999999999998 99999988754
No 58
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=20.43 E-value=1.3e+02 Score=26.16 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=30.2
Q ss_pred hHHHHhh--cCcCHHHhcCCCHHHHhcCCCC---cchHHHHHHHHH
Q 029178 154 YSITFQA--EEVDMTALLHMTDEDLKALGIP---MGPRKKILLALE 194 (197)
Q Consensus 154 Y~~~F~~--eeIDgdaLl~LTeeDLKeLGI~---lGpRKKIL~aIq 194 (197)
-.+.|++ ++.|.+.+..||++|+.++=-. .-||.||-..|.
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~ 98 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATIN 98 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 3456655 4899999999999998765333 458888877664
Done!