BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029179
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
           Aminotransferase
          Length = 449

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 104 KIMVAAKDNFL----GKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGY 159
           +++VAA+ ++L    G+ +Y D+L+           KEIQ+   KQ   L  +  F+YG+
Sbjct: 34  RLIVAAEGSWLVDDKGRKVY-DSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGH 92


>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
           Streptococcus Sp.: A Template For The Mitochondrial
           Alpha- Glycerophosphate Dehydrogenase
 pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
           Streptococcus Sp.: A Template For The Mitochondrial
           Alpha- Glycerophosphate Dehydrogenase
          Length = 607

 Score = 27.3 bits (59), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 28  SSRTTQKPNGRERQRRV----LVVQAKGKRGLQ---ARQFQRPPPPSLPKIEDDGNPRFV 80
           SSR+T+  +G  R  +     +V    G+R +    A    +P P  LP  ED+G   F 
Sbjct: 57  SSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGIAPHIPKPDPMLLPIYEDEGATTFN 116

Query: 81  IFIRMANVYLWYPLSIITG 99
           +F     + L+  L+ +TG
Sbjct: 117 MFSVKVAMDLYDKLANVTG 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,179,022
Number of Sequences: 62578
Number of extensions: 180332
Number of successful extensions: 405
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 3
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)