Query 029179
Match_columns 197
No_of_seqs 31 out of 33
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 14:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g5s_A Methylenetetrahydrofola 85.1 1.3 4.6E-05 41.1 5.9 60 76-169 255-317 (443)
2 1h2c_A Matrix protein VP40; vi 57.1 4.3 0.00015 32.5 1.7 33 84-116 34-73 (140)
3 3egr_A Phenylacetate-COA oxyge 55.0 22 0.00076 26.9 5.2 42 73-114 4-45 (96)
4 3cp8_A TRNA uridine 5-carboxym 53.8 32 0.0011 32.6 7.3 61 76-170 306-368 (641)
5 2zxi_A TRNA uridine 5-carboxym 47.7 28 0.00097 33.1 5.9 70 67-170 303-379 (637)
6 3tcq_A Matrix protein VP40; se 40.6 7.1 0.00024 34.9 0.5 33 84-116 88-127 (326)
7 3ces_A MNMG, tRNA uridine 5-ca 38.6 49 0.0017 31.5 5.9 61 76-170 312-374 (651)
8 4go6_B HCF C-terminal chain 1; 32.0 15 0.00051 28.5 1.1 17 85-101 3-19 (232)
9 3glw_Z Dynein intermediate cha 26.3 23 0.00079 21.7 1.0 13 178-190 9-22 (28)
10 2ww6_A Fibritin, T4 fibritin; 17.2 80 0.0027 19.2 2.0 23 68-96 3-25 (27)
No 1
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=85.05 E-value=1.3 Score=41.08 Aligned_cols=60 Identities=23% Similarity=0.230 Sum_probs=52.3
Q ss_pred CCeEEEEEEecCcc--ceeeeeeeecchhHHHHHHhhhcchhhhhhhhHHHHHHHHHHhhCHHHHHHHHHhhcccccccc
Q 029179 76 NPRFVIFIRMANVY--LWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSAT 153 (197)
Q Consensus 76 nP~FvIFVR~k~~~--~WYPl~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~nIa~aIYkDe~~L~k~a~r~yP~Lk~ak 153 (197)
.|-=+||+|--|.. .|||.|+=|.=. .++|+.++|..|-|..+.
T Consensus 255 ~p~a~v~LepE~~~~~~~y~~GfsTsLp----------------------------------~~~Q~~~~r~IpGLE~a~ 300 (443)
T 3g5s_A 255 EPFAVVQLRQEDKAGRMWSLVGFQTGLK----------------------------------WPEQKRLIQMIPGLENAE 300 (443)
T ss_dssp CCSEEEEEEECSTTSCEEEETTCCCCBC----------------------------------HHHHHHHHTTSTTCTTCC
T ss_pred ccceEEEEeecCCCCCEEeCCceecCCC----------------------------------HHHHHHHHhcCcChhhCe
Confidence 45569999998665 999999887654 778999999999999999
Q ss_pred ceeeeEEEeeeecc-cc
Q 029179 154 EFRYGYKLVVMLLY-LL 169 (197)
Q Consensus 154 efEYGYKl~dk~ln-p~ 169 (197)
-++|||.+.+.-+| |+
T Consensus 301 ~~r~G~~~ey~~i~sP~ 317 (443)
T 3g5s_A 301 IVRYGVMHRNTYLNAPR 317 (443)
T ss_dssp EEECCEEEEEEEECHHH
T ss_pred eeeCcEeecCceecChh
Confidence 99999999999988 75
No 2
>1h2c_A Matrix protein VP40; virus/viral protein, filovirus, ebola virus, matrix protein VP40, assembly, budding; 1.6A {Ebola virus} SCOP: b.31.1.1
Probab=57.11 E-value=4.3 Score=32.46 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=24.1
Q ss_pred EecCccceeeeeeeecc------hhHHHHHHhh-hcchhh
Q 029179 84 RMANVYLWYPLSIITGG------TTAKIMVAAK-DNFLGK 116 (197)
Q Consensus 84 R~k~~~~WYPl~vV~Gg------t~Ak~lV~a~-dn~lgk 116 (197)
-+|+++.|.||||+.-- ++|.+|.++. ..-+++
T Consensus 34 ~~K~iP~WLPLGi~~~~~Y~~~~T~AAi~~~SYTIT~F~~ 73 (140)
T 1h2c_A 34 LMKQIPIWLPLGVADQKTYSFDSTTAAIMLASYTITHFGK 73 (140)
T ss_dssp EEEEEEEEEEEEEECSSSSCHHHHHHHHHHSCEEEEEESC
T ss_pred hhccCceeeecccccccccchHHHHHHHHhcceEEEEeec
Confidence 45789999999999865 6777777764 444443
No 3
>3egr_A Phenylacetate-COA oxygenase subunit PAAB; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; 2.65A {Ralstonia eutropha JMP134}
Probab=55.05 E-value=22 Score=26.90 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=32.4
Q ss_pred CCCCCeEEEEEEecCccceeeeeeeecchhHHHHHHhhhcch
Q 029179 73 DDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFL 114 (197)
Q Consensus 73 dDGnP~FvIFVR~k~~~~WYPl~vV~Ggt~Ak~lV~a~dn~l 114 (197)
+.+-|.|+||||.+..-.=-=||.|.-.+..-+|..|-|.+.
T Consensus 4 ~~~~~~wEVFvr~~~g~~h~HvGSvhApd~e~Al~~Ar~~f~ 45 (96)
T 3egr_A 4 QKEWPLWEVFVRSKQGLEHKHCGSLHATDAQQALHMARDVYT 45 (96)
T ss_dssp CCCCCEEEEEEECTTCSSCEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCccEEEEEeCCCCCCceeeecccCCCHHHHHHHHHHHhc
Confidence 445799999999998887788999998876666666655543
No 4
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=53.83 E-value=32 Score=32.65 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=49.7
Q ss_pred CCeEEEEEEecCcc--ceeeeeeeecchhHHHHHHhhhcchhhhhhhhHHHHHHHHHHhhCHHHHHHHHHhhcccccccc
Q 029179 76 NPRFVIFIRMANVY--LWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSAT 153 (197)
Q Consensus 76 nP~FvIFVR~k~~~--~WYPl~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~nIa~aIYkDe~~L~k~a~r~yP~Lk~ak 153 (197)
.+.-+||++--+.. .|||.|+-|.=. .+.++.+++..|-|.++.
T Consensus 306 ~~~~~~~lepe~~~~~~~~~~g~st~l~----------------------------------~~~q~~~~~~i~gle~a~ 351 (641)
T 3cp8_A 306 KSSHHIFLEPEGTDTVEMYVNGFSTSLP----------------------------------EDIQIAGLRSIPGLEEAK 351 (641)
T ss_dssp CSCCEEEEEESSTTCCEEEEETCCCCSC----------------------------------HHHHHHHHTTSTTCTTCC
T ss_pred CCcceEEEecCCCCCCceecCCcccccc----------------------------------HHHHHHHHhcCcchhhce
Confidence 45679999988654 899998876543 455777888899999999
Q ss_pred ceeeeEEEeeeeccccc
Q 029179 154 EFRYGYKLVVMLLYLLS 170 (197)
Q Consensus 154 efEYGYKl~dk~lnp~s 170 (197)
-+++||.+.+..+||+.
T Consensus 352 ~~~~G~~~~y~~i~p~~ 368 (641)
T 3cp8_A 352 MIRPGYAIEYDFFHPWQ 368 (641)
T ss_dssp EEECCEEEEEEEECGGG
T ss_pred EecceeeecceEECHHH
Confidence 99999999999888843
No 5
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=47.67 E-value=28 Score=33.11 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=56.0
Q ss_pred CCCCCCCC-----CCCeEEEEEEecCcc--ceeeeeeeecchhHHHHHHhhhcchhhhhhhhHHHHHHHHHHhhCHHHHH
Q 029179 67 SLPKIEDD-----GNPRFVIFIRMANVY--LWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQ 139 (197)
Q Consensus 67 ~~Pki~dD-----GnP~FvIFVR~k~~~--~WYPl~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~nIa~aIYkDe~~L~ 139 (197)
+-|.|+++ ..+.-+||++--+.. .|||.|+=|.=. .++|
T Consensus 303 ycpsie~k~~rf~dk~~h~i~lepEg~~~~~~y~~G~stslp----------------------------------~~~Q 348 (637)
T 2zxi_A 303 YCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLP----------------------------------EEVQ 348 (637)
T ss_dssp CCCSHHHHHHHCTTCSCCEEEEEECCSSCCEEEEETCCCCSC----------------------------------HHHH
T ss_pred cCcchhhhhcccCCcccceeeeccccccCceeeecCCCCcCC----------------------------------HHHH
Confidence 55666532 146779999988644 889988866553 7788
Q ss_pred HHHHhhccccccccceeeeEEEeeeeccccc
Q 029179 140 KTAFKQFRVLQSATEFRYGYKLVVMLLYLLS 170 (197)
Q Consensus 140 k~a~r~yP~Lk~akefEYGYKl~dk~lnp~s 170 (197)
..+++..|=|.+++-.++||.+.+.-+||+.
T Consensus 349 ~~~~~~ipGle~a~~~r~Gy~ieyd~i~p~~ 379 (637)
T 2zxi_A 349 WEMYRSIPGLENVVLIRPAYAIEYDVVPPTE 379 (637)
T ss_dssp HHHHTTSTTCTTCCEEECCEEEEEEECCGGG
T ss_pred HHHHhhCcCcccceEeccccccccceEchhh
Confidence 8899999999999999999999998888864
No 6
>3tcq_A Matrix protein VP40; seattle structural genomics centers for infectious disease, sebov, seattle structural genomics center for infect disease; 1.60A {Sudan ebolavirus} PDB: 1es6_A 1h2d_A
Probab=40.61 E-value=7.1 Score=34.87 Aligned_cols=33 Identities=39% Similarity=0.600 Sum_probs=24.8
Q ss_pred EecCccceeeeeeeecc------hhHHHHHHhh-hcchhh
Q 029179 84 RMANVYLWYPLSIITGG------TTAKIMVAAK-DNFLGK 116 (197)
Q Consensus 84 R~k~~~~WYPl~vV~Gg------t~Ak~lV~a~-dn~lgk 116 (197)
=+|+++.|.||||..-. ++|.+|.+++ ..-|||
T Consensus 88 lmK~iPiWLPLGva~q~~YsfdsTtAAimlaSYTIThFg~ 127 (326)
T 3tcq_A 88 LMKQIPIWLPLGIADQKTYSFDSTTAAIMLASYTITHFGK 127 (326)
T ss_dssp EEEEEEEEEEEEEECSSSSCHHHHHHHHHSSEEEEEEECC
T ss_pred hhhcCceeeeccccccceecchhHHHHHhhhheeeeeccc
Confidence 45688999999998754 6788888774 555554
No 7
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=38.57 E-value=49 Score=31.55 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=51.0
Q ss_pred CCeEEEEEEecCcc--ceeeeeeeecchhHHHHHHhhhcchhhhhhhhHHHHHHHHHHhhCHHHHHHHHHhhcccccccc
Q 029179 76 NPRFVIFIRMANVY--LWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSAT 153 (197)
Q Consensus 76 nP~FvIFVR~k~~~--~WYPl~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~nIa~aIYkDe~~L~k~a~r~yP~Lk~ak 153 (197)
.+.-+||++--+.. .|||.|+=|.=. .++|..+++..|=|.+++
T Consensus 312 k~~~~i~lepeg~~~~~~y~~G~st~lp----------------------------------~~~q~~~~~~ipGle~a~ 357 (651)
T 3ces_A 312 RNQHQIFLEPEGLTSNEIYPNGISTSLP----------------------------------FDVQMQIVRSMQGMENAK 357 (651)
T ss_dssp SSCCEEEEEESCTTCCEEEEETCCCCSC----------------------------------HHHHHHHHHTSTTCTTCC
T ss_pred CccceeEeccccccCCeeeecCCCCCCC----------------------------------HHHHHHHHhhCCCccceE
Confidence 45679999988644 789988765443 678888999999999999
Q ss_pred ceeeeEEEeeeeccccc
Q 029179 154 EFRYGYKLVVMLLYLLS 170 (197)
Q Consensus 154 efEYGYKl~dk~lnp~s 170 (197)
=+++||.+.+.-++|+.
T Consensus 358 i~r~Gy~ieyd~i~p~~ 374 (651)
T 3ces_A 358 IVRPGYAIEYDFFDPRD 374 (651)
T ss_dssp EEECCEEEEEEEECGGG
T ss_pred EEeccceeccCccchhh
Confidence 99999999999988876
No 8
>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=31.97 E-value=15 Score=28.48 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=10.9
Q ss_pred ecCccceeeeeeeecch
Q 029179 85 MANVYLWYPLSIITGGT 101 (197)
Q Consensus 85 ~k~~~~WYPl~vV~Ggt 101 (197)
+|...+||.+|+++|.+
T Consensus 3 ~~~~~qW~dvgv~~~~~ 19 (232)
T 4go6_B 3 MKKENQWFDVGVIKGTN 19 (232)
T ss_dssp -----CCEEEEEESSSE
T ss_pred cccCCEeecCCEecCCC
Confidence 46678999999999874
No 9
>3glw_Z Dynein intermediate chain; LC8, tctex, tctex-1, IC, dynein chain, entropy, allostery, chelate effect, multivalent., microtubule; 3.15A {Drosophila melanogaster}
Probab=26.28 E-value=23 Score=21.75 Aligned_cols=13 Identities=38% Similarity=0.439 Sum_probs=9.0
Q ss_pred EEeCCCCee-eeee
Q 029179 178 YFLPLKPCI-YTKV 190 (197)
Q Consensus 178 ~~iP~~E~~-~~~~ 190 (197)
+-|||||.+ |+|-
T Consensus 9 tniPPKE~v~YsKq 22 (28)
T 3glw_Z 9 QTTPPKETLVYTKQ 22 (28)
T ss_pred ccCCCcceeEEEee
Confidence 448998876 6653
No 10
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=17.16 E-value=80 Score=19.20 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=15.7
Q ss_pred CCCCCCCCCCeEEEEEEecCccceeeeee
Q 029179 68 LPKIEDDGNPRFVIFIRMANVYLWYPLSI 96 (197)
Q Consensus 68 ~Pki~dDGnP~FvIFVR~k~~~~WYPl~v 96 (197)
.|.+..||. -|||-.| .|.||+-
T Consensus 3 i~eAP~Dg~----~Yvr~dg--~WV~l~t 25 (27)
T 2ww6_A 3 IPEAPRDAQ----AYVRKFG--EWVLLST 25 (27)
T ss_dssp CBCCCSSSC----EEEEETT--EEEEGGG
T ss_pred CccCCcCcc----eeEEEcC--eEEEccc
Confidence 355556775 4899754 7999863
Done!