Query 029179
Match_columns 197
No_of_seqs 31 out of 33
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 14:11:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029179.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029179hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2ca_ b.31.1.1 (A:) EV matri 56.7 2.1 0.00015 31.9 1.7 33 84-116 20-59 (125)
2 d1e7wa_ c.2.1.2 (A:) Dihydropt 24.4 8 0.00058 28.5 0.2 25 92-126 2-26 (284)
3 d1qqp1_ b.121.4.1 (1:) Aphthov 21.4 20 0.0014 28.5 2.0 23 76-98 171-193 (210)
4 d1vjka_ d.15.3.1 (A:) Molybdop 20.1 56 0.004 20.5 3.8 48 135-182 31-86 (88)
5 d2mev1_ b.121.4.1 (1:) Mengo e 19.4 22 0.0016 28.7 1.9 22 76-97 233-254 (268)
6 d1tme1_ b.121.4.1 (1:) Theilov 18.3 22 0.0016 28.6 1.7 19 76-94 229-247 (256)
7 d1w6ua_ c.2.1.2 (A:) 2,4-dieno 15.6 27 0.0019 26.1 1.4 39 95-144 28-68 (294)
8 d1mxha_ c.2.1.2 (A:) Dihydropt 15.3 29 0.0021 24.9 1.5 25 92-126 1-25 (266)
9 d1biaa1 a.4.5.1 (A:1-63) Bioti 14.7 97 0.007 18.8 3.9 54 102-163 6-62 (63)
10 d2bgka1 c.2.1.2 (A:11-278) Rhi 14.4 30 0.0022 25.9 1.4 39 95-144 9-49 (268)
No 1
>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId: 205488]}
Probab=56.69 E-value=2.1 Score=31.93 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=24.1
Q ss_pred EecCccceeeeeeeecc------hhHHHHHHhh-hcchhh
Q 029179 84 RMANVYLWYPLSIITGG------TTAKIMVAAK-DNFLGK 116 (197)
Q Consensus 84 R~k~~~~WYPl~vV~Gg------t~Ak~lV~a~-dn~lgk 116 (197)
-+|+++.|.||||+.-- ++|.+|.++. ..-+++
T Consensus 20 ~~k~ip~wlplgi~~~~~y~~~~t~aa~~~~sytit~f~~ 59 (125)
T d1h2ca_ 20 LMKQIPIWLPLGVADQKTYSFDSTTAAIMLASYTITHFGK 59 (125)
T ss_dssp EEEEEEEEEEEEEECSSSSCHHHHHHHHHHSCEEEEEESC
T ss_pred hhccCceeeecccccccccchHHHHHHHHhcceEEEEeec
Confidence 46789999999999864 6777777764 444443
No 2
>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}
Probab=24.38 E-value=8 Score=28.51 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=19.7
Q ss_pred eeeeeeecchhHHHHHHhhhcchhhhhhhhHHHHH
Q 029179 92 YPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARN 126 (197)
Q Consensus 92 YPl~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~n 126 (197)
.|+-+|||++ +++|+.+.+.=+..+
T Consensus 2 ~pVAlITGas----------~GIG~aiA~~la~~G 26 (284)
T d1e7wa_ 2 VPVALVTGAA----------KRLGRSIAEGLHAEG 26 (284)
T ss_dssp CCEEEETTCS----------SHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCC----------CHHHHHHHHHHHHcC
Confidence 5999999997 678888877755554
No 3
>d1qqp1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]}
Probab=21.44 E-value=20 Score=28.45 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.1
Q ss_pred CCeEEEEEEecCccceeeeeeee
Q 029179 76 NPRFVIFIRMANVYLWYPLSIIT 98 (197)
Q Consensus 76 nP~FvIFVR~k~~~~WYPl~vV~ 98 (197)
...|.+|||+|....|-|=-+++
T Consensus 171 ~~~~~Vy~RmKraE~YCPRPll~ 193 (210)
T d1qqp1_ 171 TRVTELLYRMKRAETYCPRPLLA 193 (210)
T ss_dssp SEEEEEEEEEEEEEEEEECCCCC
T ss_pred cceEEEEEEecccEEECCCcccc
Confidence 45799999999999999955544
No 4
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}
Probab=20.06 E-value=56 Score=20.49 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhccccccc-----cceeeeEEEeeee--ccccccccc-cceEEeCC
Q 029179 135 EKEIQKTAFKQFRVLQSA-----TEFRYGYKLVVML--LYLLSILHF-TWIYFLPL 182 (197)
Q Consensus 135 e~~L~k~a~r~yP~Lk~a-----kefEYGYKl~dk~--lnp~s~~~~-~~v~~iP~ 182 (197)
=.+|.+.+...||.++.. ..+.-...+.-.+ ......+.. +.|-++||
T Consensus 31 v~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d~~L~~gDevai~PP 86 (88)
T d1vjka_ 31 VRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPP 86 (88)
T ss_dssp HHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEESC
T ss_pred HHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCCcCcCCCCEEEEeCC
Confidence 367888889999998742 2233334443222 011123333 45888887
No 5
>d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat proteins {Mengovirus [TaxId: 12107]}
Probab=19.40 E-value=22 Score=28.70 Aligned_cols=22 Identities=18% Similarity=0.625 Sum_probs=18.2
Q ss_pred CCeEEEEEEecCccceeeeeee
Q 029179 76 NPRFVIFIRMANVYLWYPLSII 97 (197)
Q Consensus 76 nP~FvIFVR~k~~~~WYPl~vV 97 (197)
+-.|.||||.|+...|.|==++
T Consensus 233 ~~~~~Vy~R~K~~r~ycPRP~~ 254 (268)
T d2mev1_ 233 DIKFTVYLRYKNMRVFCPRPTV 254 (268)
T ss_dssp TCCEEEEEEEEEEEEESCCCCC
T ss_pred CcEEEEEEEeceeEEEcCCCCc
Confidence 4579999999999999985443
No 6
>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124]}
Probab=18.27 E-value=22 Score=28.63 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCeEEEEEEecCccceeee
Q 029179 76 NPRFVIFIRMANVYLWYPL 94 (197)
Q Consensus 76 nP~FvIFVR~k~~~~WYPl 94 (197)
+-.+.||||.|+...|.|=
T Consensus 229 ~~~~~Vy~R~K~~r~~cPR 247 (256)
T d1tme1_ 229 NTSASVRIRYKKMKVFCPR 247 (256)
T ss_dssp SCCEEEEEEEEEEEEEEEC
T ss_pred eeEEEEEEEecceEEECCC
Confidence 4578999999999999984
No 7
>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}
Probab=15.57 E-value=27 Score=26.09 Aligned_cols=39 Identities=28% Similarity=0.225 Sum_probs=27.6
Q ss_pred eeeecchhHHHHHHhhhcchhhhhhhhHHHHHHHHH--HhhCHHHHHHHHHh
Q 029179 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAV--IYRDEKEIQKTAFK 144 (197)
Q Consensus 95 ~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~nIa~a--IYkDe~~L~k~a~r 144 (197)
-+|||++ +++|+.+.+.=+..+ +.+ ++++++++++.+.+
T Consensus 28 alITGas----------~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~ 68 (294)
T d1w6ua_ 28 AFITGGG----------TGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQ 68 (294)
T ss_dssp EEEETTT----------SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCC----------CHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHH
Confidence 5789997 788888877766665 333 57788887776553
No 8
>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}
Probab=15.32 E-value=29 Score=24.93 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=16.6
Q ss_pred eeeeeeecchhHHHHHHhhhcchhhhhhhhHHHHH
Q 029179 92 YPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARN 126 (197)
Q Consensus 92 YPl~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~n 126 (197)
.|+.+|||++ +++|+.+.+.=+..+
T Consensus 1 ~~vAlVTGas----------~GIG~aia~~la~~G 25 (266)
T d1mxha_ 1 CPAAVITGGA----------RRIGHSIAVRLHQQG 25 (266)
T ss_dssp CCEEEETTCS----------SHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCC----------CHHHHHHHHHHHHCC
Confidence 3899999997 456666555544443
No 9
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.72 E-value=97 Score=18.85 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=35.2
Q ss_pred hHHHHHHhhhcchhhhhhhhHHHHHHH---HHHhhCHHHHHHHHHhhccccccccceeeeEEEee
Q 029179 102 TAKIMVAAKDNFLGKYIYKDTLARNLA---AVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVV 163 (197)
Q Consensus 102 ~Ak~lV~a~dn~lgk~iyk~tL~~nIa---~aIYkDe~~L~k~a~r~yP~Lk~akefEYGYKl~d 163 (197)
+-..++.-+.+ +.+++...|+..++ ..||+|=++|++ ..+|.-...+ .||+|.+
T Consensus 6 ~~~~iL~~L~~--~~~~s~~eLa~~l~vS~~ti~r~i~~L~~---~G~~I~~~~g---~GY~L~~ 62 (63)
T d1biaa1 6 VPLKLIALLAN--GEFHSGEQLGETLGMSRAAINKHIQTLRD---WGVDVFTVPG---KGYSLPE 62 (63)
T ss_dssp HHHHHHHHHTT--SSCBCHHHHHHHHTSCHHHHHHHHHHHHH---TTCCCEEETT---TEEECSS
T ss_pred HHHHHHHHHHH--CCcCCHHHHHHHHCcCHHHHHHHHHHHHH---CCCcEEEeCC---CeEEeCC
Confidence 33445555532 45678888888886 679999888876 4666544333 3898754
No 10
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}
Probab=14.45 E-value=30 Score=25.88 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=27.2
Q ss_pred eeeecchhHHHHHHhhhcchhhhhhhhHHHHHHHHH--HhhCHHHHHHHHHh
Q 029179 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAV--IYRDEKEIQKTAFK 144 (197)
Q Consensus 95 ~vV~Ggt~Ak~lV~a~dn~lgk~iyk~tL~~nIa~a--IYkDe~~L~k~a~r 144 (197)
-+|||++ +++|+.+.+.=+..+ +.+ ++++++++++.+.+
T Consensus 9 alITGas----------~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~ 49 (268)
T d2bgka1 9 AIITGGA----------GGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNN 49 (268)
T ss_dssp EEEESTT----------SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCC----------cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH
Confidence 5799997 678888777666655 233 37888888876553
Done!