BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029180
         (197 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4R690|ZDH13_MACFA Palmitoyltransferase ZDHHC13 OS=Macaca fascicularis GN=ZDHHC13 PE=2
           SV=1
          Length = 622

 Score = 32.3 bits (72), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVG-----VFVSSW 114
           LF + +   IT W V ++  F S  +   G  +  L F+TSL   FLVG        +++
Sbjct: 292 LFLLLMLSVITMWAVGYILDFNSDSWLLKGCLLVTLFFLTSLFPRFLVGYKNLIYLPTAF 351

Query: 115 LGSTVFWV-GEWFIKRMP 131
           L S++FW+   WFI   P
Sbjct: 352 LLSSIFWIFMTWFILFFP 369


>sp|Q8IUH4|ZDH13_HUMAN Palmitoyltransferase ZDHHC13 OS=Homo sapiens GN=ZDHHC13 PE=2 SV=3
          Length = 622

 Score = 32.3 bits (72), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVG----VFV-SSW 114
           LF + +   IT W + ++  F S  +   G  +  L F+TSL   FLVG    V++ +++
Sbjct: 292 LFLLLMLSVITMWAIGYILDFNSDSWLLKGCLLVTLFFLTSLFPRFLVGYKNLVYLPTAF 351

Query: 115 LGSTVFWV-GEWFIKRMP 131
           L S+VFW+   WFI   P
Sbjct: 352 LLSSVFWIFMTWFILFFP 369


>sp|Q8IZQ8|MYCD_HUMAN Myocardin OS=Homo sapiens GN=MYOCD PE=1 SV=1
          Length = 938

 Score = 31.6 bits (70), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 2   AEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASST 37
           A E++S+S  LS  +   EDP++   SPP + AS T
Sbjct: 152 AFEEDSSSDGLSPDQTRSEDPQNSAGSPPDAKASDT 187


>sp|Q255P5|LPXB_CHLFF Lipid-A-disaccharide synthase OS=Chlamydophila felis (strain
           Fe/C-56) GN=lpxB PE=3 SV=1
          Length = 625

 Score = 31.2 bits (69), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 20/74 (27%)

Query: 54  MTGCVVLFPVAVTFFITW---------------WFVQFVDGFFSPLY-----EHLGFDIF 93
           + GC+ LF  +  FFI W               W V F+ GF + LY     + +    +
Sbjct: 142 IAGCIGLFTFSSRFFIQWCHLEINNRSTLPALFWLVSFIGGFLAFLYFIRTGDPVNIISY 201

Query: 94  GLGFITSLVFVFLV 107
           G G + SL  + ++
Sbjct: 202 GCGLLPSLANLLII 215


>sp|C1N652|CSPL_MICPC CASP-like protein MICPUCDRAFT_53157 OS=Micromonas pusilla (strain
           CCMP1545) GN=MICPUCDRAFT_53157 PE=3 SV=2
          Length = 205

 Score = 30.0 bits (66), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 93  FGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMP 131
           +G G+    VF FLV + V+ WL  T+ W+G + I+++P
Sbjct: 54  YGCGYHKFAVFQFLVVICVTYWL-FTMLWMGMYLIQKVP 91


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,285,572
Number of Sequences: 539616
Number of extensions: 2708839
Number of successful extensions: 9944
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 9936
Number of HSP's gapped (non-prelim): 24
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)