Query 029180
Match_columns 197
No_of_seqs 114 out of 602
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2928 Uncharacterized conser 100.0 4.6E-40 9.9E-45 278.8 17.1 147 46-193 3-164 (222)
2 PF04367 DUF502: Protein of un 100.0 1.4E-28 2.9E-33 188.8 11.3 95 98-193 2-104 (108)
3 PRK15350 type III secretion sy 91.5 4.7 0.0001 30.2 10.7 79 47-132 8-86 (88)
4 PRK05700 fliQ flagellar biosyn 91.0 5.4 0.00012 29.9 10.6 79 47-132 8-86 (89)
5 TIGR01402 fliQ flagellar biosy 90.9 5.4 0.00012 29.9 10.6 79 47-132 8-86 (88)
6 TIGR02120 GspF general secreti 90.6 4.9 0.00011 36.6 11.8 22 119-140 243-264 (399)
7 PRK06010 fliQ flagellar biosyn 89.7 7.1 0.00015 29.3 10.7 79 47-132 8-86 (88)
8 TIGR01403 fliQ_rel_III type II 88.9 7.6 0.00016 28.6 10.0 78 47-131 4-81 (81)
9 PRK12781 fliQ flagellar biosyn 87.8 9.6 0.00021 28.5 10.7 80 46-132 7-86 (88)
10 PRK10573 type IV pilin biogene 87.3 12 0.00025 34.2 11.8 18 121-138 244-261 (399)
11 PF01311 Bac_export_1: Bacteri 86.4 17 0.00037 31.4 11.9 43 39-81 163-205 (249)
12 PRK12772 bifunctional flagella 85.4 12 0.00027 36.8 11.6 40 42-81 165-204 (609)
13 PF11947 DUF3464: Protein of u 85.4 9.8 0.00021 31.3 9.2 70 30-113 46-115 (153)
14 PRK15333 type III secretion sy 84.2 15 0.00033 27.4 9.9 78 48-132 7-84 (86)
15 PRK09824 PTS system beta-gluco 83.4 9.6 0.00021 37.7 9.8 84 60-146 219-304 (627)
16 COG1459 PulF Type II secretory 83.3 7 0.00015 36.5 8.5 24 117-140 238-261 (397)
17 COG1684 FliR Flagellar biosynt 83.1 19 0.00042 31.9 10.8 43 39-81 165-207 (258)
18 COG1987 FliQ Flagellar biosynt 81.6 20 0.00044 27.0 10.6 77 49-132 10-86 (89)
19 PRK09765 PTS system 2-O-a-mann 78.9 12 0.00027 36.8 8.9 70 60-131 381-456 (631)
20 PRK11007 PTS system trehalose( 78.2 18 0.00039 34.6 9.5 85 59-146 231-318 (473)
21 TIGR01992 PTS-IIBC-Tre PTS sys 78.0 19 0.00042 34.1 9.6 84 60-146 233-318 (462)
22 PRK09796 PTS system cellobiose 77.5 21 0.00047 34.1 9.8 84 60-146 221-306 (472)
23 TIGR01996 PTS-II-BC-sucr PTS s 76.9 28 0.0006 33.0 10.4 84 60-146 230-315 (461)
24 COG3768 Predicted membrane pro 75.8 17 0.00036 33.5 8.1 34 46-79 60-93 (350)
25 PRK09586 murP PTS system N-ace 75.7 24 0.00052 33.8 9.6 83 59-145 230-313 (476)
26 PRK15349 type III secretion sy 73.3 63 0.0014 28.3 11.8 74 43-117 171-244 (259)
27 PRK15083 PTS system mannitol-s 72.8 21 0.00045 35.2 8.6 83 59-144 101-190 (639)
28 TIGR00851 mtlA PTS system, man 71.5 42 0.0009 30.6 9.8 83 59-144 93-182 (338)
29 PF08566 Pam17: Mitochondrial 70.3 51 0.0011 27.7 9.2 37 88-125 72-108 (173)
30 TIGR01400 fliR flagellar biosy 68.1 80 0.0017 27.3 11.7 40 42-81 159-198 (245)
31 PRK05415 hypothetical protein; 66.4 76 0.0016 29.3 10.3 30 49-79 66-95 (341)
32 TIGR02002 PTS-II-BC-glcB PTS s 66.3 45 0.00097 32.1 9.2 85 60-145 135-223 (502)
33 PRK11404 putative PTS system 65.7 34 0.00073 32.8 8.2 69 59-130 228-302 (482)
34 PF11872 DUF3392: Protein of u 65.2 26 0.00056 27.2 6.0 63 50-113 41-105 (106)
35 KOG3249 Uncharacterized conser 62.6 28 0.00061 29.2 6.2 30 9-38 56-86 (181)
36 COG4794 EscS Type III secretor 62.3 65 0.0014 24.3 9.9 78 50-134 11-88 (89)
37 PF05552 TM_helix: Conserved T 60.0 23 0.00049 23.4 4.4 24 100-123 20-43 (53)
38 PRK05701 fliR flagellar biosyn 59.2 1.2E+02 0.0026 26.2 10.8 40 42-81 161-200 (242)
39 PF02674 Colicin_V: Colicin V 59.2 79 0.0017 24.2 9.9 82 50-131 18-104 (146)
40 PRK10110 bifunctional PTS syst 57.7 88 0.0019 30.4 9.6 87 60-148 148-238 (530)
41 TIGR02004 PTS-IIBC-malX PTS sy 57.6 82 0.0018 30.5 9.4 88 60-149 139-230 (517)
42 TIGR01183 ntrB nitrate ABC tra 55.9 1.2E+02 0.0026 25.3 10.4 67 40-108 14-80 (202)
43 TIGR01427 PTS_IIC_fructo PTS s 55.4 73 0.0016 29.2 8.2 72 59-131 112-185 (346)
44 PRK15071 lipopolysaccharide AB 55.4 66 0.0014 28.7 7.9 39 43-81 3-41 (356)
45 TIGR01995 PTS-II-ABC-beta PTS 54.2 1.2E+02 0.0026 29.9 10.1 83 60-145 211-295 (610)
46 PF10329 DUF2417: Region of un 51.4 1.4E+02 0.003 26.2 8.9 16 14-29 14-29 (232)
47 PRK10263 DNA translocase FtsK; 51.1 3.7E+02 0.008 29.5 13.9 30 95-126 161-190 (1355)
48 TIGR01401 fliR_like_III type I 50.5 1.7E+02 0.0037 25.5 11.4 41 41-81 165-205 (253)
49 PF06596 PsbX: Photosystem II 49.7 50 0.0011 21.2 4.4 25 46-70 6-30 (39)
50 PF09527 ATPase_gene1: Putativ 48.7 76 0.0016 20.8 6.0 15 102-116 15-29 (55)
51 PF02355 SecD_SecF: Protein ex 46.4 1.7E+02 0.0037 24.3 9.4 69 36-124 119-187 (189)
52 PF14257 DUF4349: Domain of un 45.7 55 0.0012 28.1 5.6 17 57-73 240-256 (262)
53 cd02433 Nodulin-21_like_2 Nodu 45.4 1.6E+02 0.0035 25.5 8.4 51 49-119 158-208 (234)
54 PF07136 DUF1385: Protein of u 44.7 2.2E+02 0.0047 25.0 9.2 23 49-71 49-71 (236)
55 PRK05122 major facilitator sup 44.5 1.1E+02 0.0025 26.6 7.6 19 24-42 1-19 (399)
56 TIGR00852 pts-Glc PTS system, 42.7 2.3E+02 0.005 24.9 9.2 24 59-82 66-89 (289)
57 PF07330 DUF1467: Protein of u 41.2 95 0.0021 23.0 5.5 26 29-58 38-63 (85)
58 TIGR00437 feoB ferrous iron tr 41.0 2E+02 0.0043 28.2 9.2 53 38-90 461-522 (591)
59 PF11241 DUF3043: Protein of u 40.8 1.5E+02 0.0033 24.7 7.3 15 59-73 80-94 (170)
60 PF01313 Bac_export_3: Bacteri 40.8 1.4E+02 0.003 21.6 9.9 34 47-80 5-38 (76)
61 PRK14762 membrane protein; Pro 39.9 46 0.001 19.5 2.8 16 100-115 7-22 (27)
62 PF04854 DUF624: Protein of un 39.6 88 0.0019 21.6 5.0 31 41-71 44-74 (77)
63 TIGR03745 conj_TIGR03745 integ 39.0 1.8E+02 0.004 22.5 9.0 64 45-109 31-99 (104)
64 PRK10617 cytochrome c-type pro 38.6 90 0.002 26.6 5.7 19 33-51 2-20 (200)
65 PRK09554 feoB ferrous iron tra 38.5 1.6E+02 0.0036 29.9 8.4 55 37-91 496-564 (772)
66 PRK12780 fliR flagellar biosyn 38.3 2.7E+02 0.0058 24.2 11.2 40 42-81 169-208 (251)
67 PF03547 Mem_trans: Membrane t 38.2 2.8E+02 0.0061 24.6 9.2 29 46-74 235-263 (385)
68 TIGR02003 PTS-II-BC-unk1 PTS s 37.8 2.8E+02 0.0061 27.2 9.6 87 60-147 142-236 (548)
69 PF06024 DUF912: Nucleopolyhed 36.9 13 0.00029 28.1 0.4 24 50-73 61-84 (101)
70 PRK10478 putative PTS system f 36.8 1.7E+02 0.0037 27.2 7.6 91 45-136 7-144 (359)
71 PF03739 YjgP_YjgQ: Predicted 35.8 1.7E+02 0.0037 25.6 7.3 31 51-81 5-35 (354)
72 PF15446 zf-PHD-like: PHD/FYVE 35.5 17 0.00036 30.6 0.8 14 15-28 101-114 (175)
73 PRK11026 ftsX cell division AB 35.1 3.3E+02 0.0072 24.3 9.8 26 98-123 281-306 (309)
74 PF14584 DUF4446: Protein of u 35.1 2.5E+02 0.0053 22.8 9.0 26 154-179 78-109 (151)
75 PF03596 Cad: Cadmium resistan 35.0 1.3E+02 0.0027 25.5 6.0 85 95-190 34-119 (191)
76 smart00743 Agenet Tudor-like d 34.9 1.3E+02 0.0029 19.7 5.7 33 158-190 7-39 (61)
77 PRK00523 hypothetical protein; 34.4 95 0.0021 22.5 4.4 40 104-148 14-53 (72)
78 PF01770 Folate_carrier: Reduc 33.5 4.2E+02 0.0091 25.1 9.8 36 35-77 226-261 (412)
79 PF04109 APG9: Autophagy prote 33.0 1.5E+02 0.0033 27.6 6.7 45 35-80 107-151 (370)
80 PRK04949 putative sulfate tran 30.5 3E+02 0.0065 24.0 7.9 22 59-80 30-55 (251)
81 PF05283 MGC-24: Multi-glycosy 30.1 51 0.0011 27.9 2.8 26 50-75 160-185 (186)
82 COG3763 Uncharacterized protei 29.9 1.3E+02 0.0027 21.8 4.4 34 95-132 5-38 (71)
83 PF04971 Lysis_S: Lysis protei 28.5 1.4E+02 0.0031 21.4 4.5 41 69-117 17-57 (68)
84 PRK01844 hypothetical protein; 27.8 1.2E+02 0.0027 21.9 4.1 42 102-148 11-52 (72)
85 PRK15120 lipopolysaccharide AB 27.8 3.4E+02 0.0074 24.3 8.0 34 48-81 6-39 (366)
86 KOG3044 Uncharacterized conser 27.7 57 0.0012 29.6 2.8 50 6-56 224-273 (307)
87 PF03672 UPF0154: Uncharacteri 27.2 84 0.0018 22.3 3.1 43 101-148 3-45 (64)
88 PF07670 Gate: Nucleoside reco 27.0 1.4E+02 0.003 21.7 4.5 32 59-90 3-40 (109)
89 PF00672 HAMP: HAMP domain; I 26.8 96 0.0021 20.4 3.3 26 97-122 5-30 (70)
90 PRK00665 petG cytochrome b6-f 26.7 93 0.002 19.7 2.9 21 95-115 7-27 (37)
91 PRK10845 colicin V production 26.7 3.4E+02 0.0074 21.9 8.3 25 104-128 77-101 (162)
92 PRK10494 hypothetical protein; 26.3 4.4E+02 0.0094 22.9 9.1 64 50-125 5-68 (259)
93 COG4300 CadD Predicted permeas 25.8 3.4E+02 0.0074 23.3 7.0 69 111-189 60-130 (205)
94 CHL00008 petG cytochrome b6/f 25.7 98 0.0021 19.6 2.8 21 95-115 7-27 (37)
95 PF03547 Mem_trans: Membrane t 25.7 2.9E+02 0.0063 24.5 7.1 15 96-110 279-293 (385)
96 TIGR00834 ae anion exchange pr 25.5 2.2E+02 0.0049 29.7 7.0 46 104-149 467-512 (900)
97 COG0838 NuoA NADH:ubiquinone o 25.4 3.4E+02 0.0074 21.4 8.4 45 27-75 42-86 (123)
98 PF12729 4HB_MCP_1: Four helix 25.3 2.9E+02 0.0063 20.6 7.0 40 95-135 10-50 (181)
99 cd02435 CCC1 CCC1. CCC1: This 25.2 4.3E+02 0.0094 22.9 7.9 48 50-117 162-209 (241)
100 PRK02463 OxaA-like protein pre 25.0 2.2E+02 0.0047 25.8 6.1 22 47-68 3-24 (307)
101 COG3366 Uncharacterized protei 24.5 5.5E+02 0.012 23.5 10.6 48 51-98 176-225 (311)
102 PTZ00243 ABC transporter; Prov 24.5 9.9E+02 0.021 26.4 12.4 30 31-60 224-253 (1560)
103 PF06305 DUF1049: Protein of u 24.2 1.8E+02 0.0039 19.4 4.3 19 95-113 18-36 (68)
104 PHA01399 membrane protein P6 23.9 4.8E+02 0.01 22.6 9.0 11 133-143 104-114 (242)
105 COG4477 EzrA Negative regulato 23.7 1.3E+02 0.0029 29.6 4.7 43 94-136 5-49 (570)
106 PF08196 UL2: UL2 protein; In 23.6 2.5E+02 0.0055 19.3 5.2 21 53-76 35-55 (60)
107 TIGR00822 EII-Sor PTS system, 23.1 5.4E+02 0.012 22.9 8.3 27 92-118 188-222 (265)
108 TIGR01620 hyp_HI0043 conserved 23.1 5.7E+02 0.012 23.1 9.0 30 49-78 13-42 (289)
109 PRK15111 antimicrobial peptide 23.1 5.2E+02 0.011 22.7 8.1 34 100-133 109-144 (296)
110 PF12841 YvrJ: YvrJ protein fa 22.9 1.4E+02 0.003 18.9 3.2 24 61-84 8-31 (38)
111 COG0370 FeoB Fe2+ transport sy 22.6 5.1E+02 0.011 26.2 8.6 54 37-90 485-550 (653)
112 PF02529 PetG: Cytochrome B6-F 22.6 1.5E+02 0.0032 18.9 3.2 21 94-114 6-26 (37)
113 COG2981 CysZ Uncharacterized p 22.5 5.5E+02 0.012 22.9 7.9 55 58-112 27-89 (250)
114 PF14018 DUF4234: Domain of un 22.4 2.7E+02 0.0058 19.2 8.8 62 62-123 11-72 (75)
115 COG3224 Uncharacterized protei 22.0 4E+02 0.0086 22.8 6.7 36 80-117 140-175 (195)
116 PF11120 DUF2636: Protein of u 22.0 2.2E+02 0.0047 20.1 4.3 25 101-126 14-38 (62)
117 PF03186 CobD_Cbib: CobD/Cbib 21.7 5.7E+02 0.012 22.6 10.5 42 37-78 22-71 (295)
118 PF09465 LBR_tudor: Lamin-B re 21.4 2.8E+02 0.0061 19.0 5.3 33 154-186 6-39 (55)
119 PRK04897 heat shock protein Ht 21.4 5.7E+02 0.012 22.6 11.9 60 107-174 52-115 (298)
120 PF07290 DUF1449: Protein of u 21.4 3.7E+02 0.0081 22.9 6.6 19 102-120 102-120 (202)
121 COG2177 FtsX Cell division pro 20.9 6.2E+02 0.013 22.8 9.7 57 57-114 227-285 (297)
122 TIGR00439 ftsX putative protei 20.9 6E+02 0.013 22.6 10.5 26 99-124 282-307 (309)
123 COG1286 CvpA Uncharacterized m 20.9 4.9E+02 0.011 21.5 9.7 68 50-118 21-88 (182)
124 cd02434 Nodulin-21_like_3 Nodu 20.8 4.6E+02 0.01 22.3 7.1 58 49-120 142-200 (225)
125 PRK11365 ssuC alkanesulfonate 20.7 4.6E+02 0.0099 22.4 7.1 60 41-102 58-117 (263)
126 PF12273 RCR: Chitin synthesis 20.6 1.2E+02 0.0027 23.4 3.3 12 97-108 7-18 (130)
127 TIGR01937 nqrB NADH:ubiquinone 20.4 5.6E+02 0.012 24.4 8.0 33 49-81 110-142 (413)
No 1
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.6e-40 Score=278.82 Aligned_cols=147 Identities=31% Similarity=0.684 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-------ccccchhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 029180 46 QSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYE-------HLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118 (197)
Q Consensus 46 ~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~-------~~g~~~pglgll~~l~li~~iG~la~~~~g~~ 118 (197)
++++|++|++||++++|+++|+|+++|+++++|+++.|.+. +++.+++++|+++.+++++++|+++++.+||+
T Consensus 3 ~~~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~~ 82 (222)
T COG2928 3 AKRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGRS 82 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45689999999999999999999999999999999998553 23566899999999999999999999999999
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHhCCCCCCcccCcEEEEEeCCCCeeEEEEEeeeec-------CceEE-EEEeC
Q 029180 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT-------LQVLV-VYVVY 190 (197)
Q Consensus 119 l~~~~e~ll~rIPvVksIYssiKql~~~f~g~~~~~~f~~VVlVe~P~~g~~~iGFvT~~~~-------~~~~v-VfvP~ 190 (197)
+++++|++++|||++|+||+++||+++++.++++ ++||+||+||||++|+|++||+|++.. +++|+ ||+||
T Consensus 83 l~~~~d~~L~RiPlv~~IY~s~kqi~etll~~~~-~sfk~vvlVefP~~G~~~i~fvtg~~~~e~~~~~~~~~v~VfvPT 161 (222)
T COG2928 83 LLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQS-GSFKQVVLVEFPRRGIWAIAFVTGEKAGELKEKEGRPMVAVFVPT 161 (222)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHHHHHHHhcCC-ccceeeEEEECCCCCcEEEEEeccCCCcchhcccCCceEEEEcCC
Confidence 9999999999999999999999999999998764 589999999999999999999998772 24677 99998
Q ss_pred CCC
Q 029180 191 SSP 193 (197)
Q Consensus 191 t~p 193 (197)
||-
T Consensus 162 TPN 164 (222)
T COG2928 162 TPN 164 (222)
T ss_pred CCC
Confidence 874
No 2
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=99.96 E-value=1.4e-28 Score=188.79 Aligned_cols=95 Identities=31% Similarity=0.610 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhHHHHHHHHHHHHhCCCCCCcccCcEEEEEeCCCCeeEEEEEee
Q 029180 98 ITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITS 177 (197)
Q Consensus 98 l~~l~li~~iG~la~~~~g~~l~~~~e~ll~rIPvVksIYssiKql~~~f~g~~~~~~f~~VVlVe~P~~g~~~iGFvT~ 177 (197)
++++++|+++|+++++++|+++++++|+++.|||+||+||+++||++++|+++++ ++|++||+||||++|+|++||+|+
T Consensus 2 l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~~-~~f~~vVlV~~p~~g~~~igFvT~ 80 (108)
T PF04367_consen 2 LILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDKK-KSFKKVVLVEFPRPGMYVIGFVTG 80 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhccc-ccCCeEEEEEecCCCcEEEEEEec
Confidence 5678899999999999999999999999999999999999999999999999864 459999999999999999999999
Q ss_pred eecC-------ceEE-EEEeCCCC
Q 029180 178 TVTL-------QVLV-VYVVYSSP 193 (197)
Q Consensus 178 ~~~~-------~~~v-VfvP~t~p 193 (197)
+..+ ++++ ||+|+||-
T Consensus 81 ~~~~~~~~~~~~~~v~VfvPtsPn 104 (108)
T PF04367_consen 81 EDPGELPGKTGEEMVAVFVPTSPN 104 (108)
T ss_pred cCcchhhccCCCCEEEEEeCCCCC
Confidence 8843 2566 99997653
No 3
>PRK15350 type III secretion system protein SsaS; Provisional
Probab=91.50 E-value=4.7 Score=30.21 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029180 47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF 126 (197)
Q Consensus 47 ~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~l 126 (197)
...++.+...+.+..|+.+.-.+++-+++.+...-+ ..-.-+.++-=++.++++=++.-.|..+.+.++.+++
T Consensus 8 ~l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQ-------IQEqTLsFvPKliav~~~l~~~gpWm~~~l~~ft~~i 80 (88)
T PRK15350 8 QFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQ-------IQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999988888887776555431 1111223332233333334444556777788899999
Q ss_pred hcccch
Q 029180 127 IKRMPF 132 (197)
Q Consensus 127 l~rIPv 132 (197)
+.+||-
T Consensus 81 f~~i~~ 86 (88)
T PRK15350 81 MLRIGE 86 (88)
T ss_pred HHhhhh
Confidence 999883
No 4
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated
Probab=90.96 E-value=5.4 Score=29.91 Aligned_cols=79 Identities=13% Similarity=0.237 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029180 47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF 126 (197)
Q Consensus 47 ~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~l 126 (197)
...++.+...+.+..|+.+.-.+++-+++.+...-+ ..-.-++++-=++.++++=++.-.|.++.+.++.+++
T Consensus 8 ~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~TQ-------IqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i 80 (89)
T PRK05700 8 DLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQ-------INEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999888888877776555431 1111233333333344444455567778888999999
Q ss_pred hcccch
Q 029180 127 IKRMPF 132 (197)
Q Consensus 127 l~rIPv 132 (197)
+++||-
T Consensus 81 f~~i~~ 86 (89)
T PRK05700 81 FSNIPT 86 (89)
T ss_pred HHHHHh
Confidence 999985
No 5
>TIGR01402 fliQ flagellar biosynthetic protein FliQ. This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.
Probab=90.93 E-value=5.4 Score=29.87 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029180 47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF 126 (197)
Q Consensus 47 ~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~l 126 (197)
...++.+...+.+..|+.+.-.+++-+++.+...-+ ..-.-+.++-=++.++++-++.-.|.++.+.++.+++
T Consensus 8 ~l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~TQ-------IqEqTLsFvPKliav~~~l~~~gpWm~~~l~~f~~~~ 80 (88)
T TIGR01402 8 DLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQ-------IQEQTLSFIPKIIAILLALALLGPWMLTKLLDFTREI 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999888888877776555431 1111233333333344444455567778888999999
Q ss_pred hcccch
Q 029180 127 IKRMPF 132 (197)
Q Consensus 127 l~rIPv 132 (197)
+.+||-
T Consensus 81 f~~i~~ 86 (88)
T TIGR01402 81 FQRIPQ 86 (88)
T ss_pred HHHhhh
Confidence 999985
No 6
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=90.57 E-value=4.9 Score=36.59 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=18.4
Q ss_pred HHHHHHHHhcccchhhHHHHHH
Q 029180 119 VFWVGEWFIKRMPFVRHLYSAS 140 (197)
Q Consensus 119 l~~~~e~ll~rIPvVksIYssi 140 (197)
.-.+.|+++.|||+++++|...
T Consensus 243 ~r~~~~~~l~kiP~~g~~~~~~ 264 (399)
T TIGR02120 243 FRLRFDRRLLRLPVIGRLVRGL 264 (399)
T ss_pred HHHHHHHHHhcccchHHHHHHH
Confidence 4467899999999999998754
No 7
>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=89.65 E-value=7.1 Score=29.25 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029180 47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF 126 (197)
Q Consensus 47 ~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~l 126 (197)
...++.+...+.+.+|+.+.-.+++-+++.+...-+ ..-.-+.++-=++.++++=++.-.|..+.+.++.+++
T Consensus 8 ~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~TQ-------IqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i 80 (88)
T PRK06010 8 DIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQ-------IQEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLLI 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999988888877776555431 1111223332223333333344456667788899999
Q ss_pred hcccch
Q 029180 127 IKRMPF 132 (197)
Q Consensus 127 l~rIPv 132 (197)
+.+||-
T Consensus 81 f~~i~~ 86 (88)
T PRK06010 81 YSRIAG 86 (88)
T ss_pred HHhhcc
Confidence 999883
No 8
>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs.
Probab=88.92 E-value=7.6 Score=28.63 Aligned_cols=78 Identities=15% Similarity=0.328 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029180 47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF 126 (197)
Q Consensus 47 ~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~l 126 (197)
...++.+...+.+-.|..+.-.+++-+++.+...-+ ..-.-+.++-=++.+++.=++...|..+.+.++.+++
T Consensus 4 ~~~~~al~~~l~~s~P~L~~alvVGLvIsi~QA~TQ-------IqEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 76 (81)
T TIGR01403 4 QLTNQALLLVLILSLPPVLVAAIVGLLVSLLQALTQ-------LQDQTLPFAIKLIAVFITLMLTAGWLGAEILNFANQI 76 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999888888877776555431 1111122222222222333334445666788899999
Q ss_pred hcccc
Q 029180 127 IKRMP 131 (197)
Q Consensus 127 l~rIP 131 (197)
+++||
T Consensus 77 f~~i~ 81 (81)
T TIGR01403 77 FTMIP 81 (81)
T ss_pred HhhCC
Confidence 98887
No 9
>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=87.83 E-value=9.6 Score=28.52 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 029180 46 QSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEW 125 (197)
Q Consensus 46 ~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ 125 (197)
....++.+...+.+-.|+.+.-.+++-+++.+...-+ ..-.-+.++-=++.++++=++.-.|.++.+.++.++
T Consensus 7 i~~~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQ-------IQEqTLsFvPKliav~~~l~~~~~wm~~~l~~ft~~ 79 (88)
T PRK12781 7 LELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALTQ-------IQEVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEM 79 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999888888877776555431 111122333233333444444555677788889999
Q ss_pred Hhcccch
Q 029180 126 FIKRMPF 132 (197)
Q Consensus 126 ll~rIPv 132 (197)
++.+||-
T Consensus 80 if~~i~~ 86 (88)
T PRK12781 80 VYGRIES 86 (88)
T ss_pred HHHhhcc
Confidence 9999883
No 10
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=87.32 E-value=12 Score=34.21 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.5
Q ss_pred HHHHHHhcccchhhHHHH
Q 029180 121 WVGEWFIKRMPFVRHLYS 138 (197)
Q Consensus 121 ~~~e~ll~rIPvVksIYs 138 (197)
.+.|+++.|+|+++.+|.
T Consensus 244 ~~~~~~l~~iP~~g~~~~ 261 (399)
T PRK10573 244 IREQRLLLRLPLVGSLIR 261 (399)
T ss_pred HHHHHHHhcCCeeccccc
Confidence 467999999999998776
No 11
>PF01311 Bac_export_1: Bacterial export proteins, family 1; InterPro: IPR002010 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis []. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. It is believed that the family of type III inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "R" here for nomenclature purposes, includes the Salmonella and Shigella SpaR, the Yersinia YscT, Rhizobium Y4YN, and the Erwinia HrcT genes []. The flagellar protein FliR also shares similarity, probably due to evolution of the type III secretion system from the flagellar biosynthetic pathway. ; GO: 0006605 protein targeting, 0016020 membrane
Probab=86.44 E-value=17 Score=31.44 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 39 QACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 39 ~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
+.......+.+.+.|..|+..-+|+++..+++.-.++.+.+..
T Consensus 163 ~~~~~~~~~~~~~~f~~al~lAaP~i~~lll~~l~lG~l~R~~ 205 (249)
T PF01311_consen 163 EEALQFIIKLFGQMFSLALQLAAPVIAALLLVDLALGLLSRAA 205 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566677778899999999999999999999999999888875
No 12
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=85.38 E-value=12 Score=36.75 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 42 CYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 42 ~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
...+.+.+.+.|..|+..-+|+++..+++...++++....
T Consensus 165 ~~~~~~~~~~~F~~al~lAaP~i~~lll~~~~lGllsR~a 204 (609)
T PRK12772 165 IMHVINVFIQYFYIGIKIAIPIVLIILITDLTLGLISRTV 204 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556677889999999999999999999999999988875
No 13
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=85.38 E-value=9.8 Score=31.26 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=37.0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHH
Q 029180 30 PTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGV 109 (197)
Q Consensus 30 ~~~~~~~~~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~ 109 (197)
.....+.-++.-..||++++ ++.+-+|.++-+-++...+-.+++- ..++|--..+++-+++|.+|+
T Consensus 46 ~~~~~~~IP~~Vs~RM~rRm------~~~~GiP~~lG~~~f~~~y~l~~~~--------~~dvP~~~~~~~S~~~Fg~gl 111 (153)
T PF11947_consen 46 RDEDDSAIPEVVSNRMLRRM------AVFVGIPTALGVAVFVVFYYLKSRQ--------IVDVPPWAVLLVSLVFFGLGL 111 (153)
T ss_pred ccccccccCHHHHHHHHHHH------HHHhchHHHHHHHHHHHHHHHHhcc--------ccccCchHHHHHHHHHHHHHH
Confidence 44455556677777776663 3445567766655555544444432 133443333334455666666
Q ss_pred HHHh
Q 029180 110 FVSS 113 (197)
Q Consensus 110 la~~ 113 (197)
+.-+
T Consensus 112 lGis 115 (153)
T PF11947_consen 112 LGIS 115 (153)
T ss_pred Hhhh
Confidence 6543
No 14
>PRK15333 type III secretion system protein SpaQ; Provisional
Probab=84.22 E-value=15 Score=27.40 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 029180 48 WISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFI 127 (197)
Q Consensus 48 ~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ll 127 (197)
..++.+...+.+..|+.+.-.+++-+++.+...-+ ..-.-+.++-=++.+++.=++.-.|.++.+.++.++++
T Consensus 7 ~~~~al~~~l~ls~P~L~valvVGlvIsi~QA~TQ-------IQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if 79 (86)
T PRK15333 7 AGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQ-------LQEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVI 79 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999998888888877776555431 11112233322333333334445567778888999999
Q ss_pred cccch
Q 029180 128 KRMPF 132 (197)
Q Consensus 128 ~rIPv 132 (197)
..+|-
T Consensus 80 ~~~~~ 84 (86)
T PRK15333 80 FLALA 84 (86)
T ss_pred Hhhhc
Confidence 88874
No 15
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=83.35 E-value=9.6 Score=37.74 Aligned_cols=84 Identities=12% Similarity=0.259 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHhcccchh-hHHH
Q 029180 60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSL-VFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFV-RHLY 137 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l-~li~~iG~la~~~~g~~l~~~~e~ll~rIPvV-ksIY 137 (197)
++|++++.|+..|+-+++++.+-..++.+ -.|.+.+++++ +.++++|=+.. ++|..+-..++++.+.-|.+ +.|+
T Consensus 219 ViPiil~v~~~s~iEk~l~K~iP~~l~~i--~~P~ltlli~~pl~l~viGPig~-~i~~~l~~~i~~l~~~~~~i~g~i~ 295 (627)
T PRK09824 219 VIPIIFSAWLCSILERRLNAWLPSAIKNF--FTPLLCLMVIVPLTFLLIGPLAT-WLSELLAAGYQWLYQAVPAFAGAVM 295 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHH
Confidence 79999999999999999999875544332 23444444433 33555555543 46666666667777666643 3467
Q ss_pred HHHHHHHHH
Q 029180 138 SASKQISAA 146 (197)
Q Consensus 138 ssiKql~~~ 146 (197)
.++-+++=.
T Consensus 296 g~~~~~lV~ 304 (627)
T PRK09824 296 GAFWQVFVI 304 (627)
T ss_pred HHHHHHHHH
Confidence 777665543
No 16
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.26 E-value=7 Score=36.52 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcccchhhHHHHHH
Q 029180 117 STVFWVGEWFIKRMPFVRHLYSAS 140 (197)
Q Consensus 117 ~~l~~~~e~ll~rIPvVksIYssi 140 (197)
.+.-.+.|+++.|+|+++.+....
T Consensus 238 ~~~r~~~~~~llrlP~~g~l~~~~ 261 (397)
T COG1459 238 PAGRRRLDRLLLRLPLFGKLVRKY 261 (397)
T ss_pred hHHHHHHHhHHhcCCcHHHHHHHH
Confidence 345578999999999999987743
No 17
>COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.14 E-value=19 Score=31.87 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 39 QACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 39 ~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
+..+..+-+++...|..|+..-+|++....++.-+++.+++..
T Consensus 165 ~~~~~~l~~~l~~~F~~~l~iAlPii~~lLlvnlalGlv~R~~ 207 (258)
T COG1684 165 DNAFLLLAKALSAIFLIGLRLALPIIALLLLVNLALGLLNRLA 207 (258)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456677788899999999999999999999999999988875
No 18
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.64 E-value=20 Score=26.99 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIK 128 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~ 128 (197)
.++.+-.+|....|..+.-.+++-++..+...-+ ..-.-+.++==++.++++-.+.-.|.++.+.++...+++
T Consensus 10 ~~~ai~~~L~l~~P~ll~alvvGLvIsifQA~TQ-------IqEqTLsFiPKIiai~~~l~~~gpWm~~~l~dft~~if~ 82 (89)
T COG1987 10 GQEAIWLVLMLSAPVLLVALVVGLVISIFQAATQ-------IQEQTLSFIPKIIAVFLVLILLGPWMLNQLLDFTVTIFS 82 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5677888999999998888777766665444321 111122333233445555556666788889999999999
Q ss_pred ccch
Q 029180 129 RMPF 132 (197)
Q Consensus 129 rIPv 132 (197)
|||.
T Consensus 83 ~i~~ 86 (89)
T COG1987 83 NIPQ 86 (89)
T ss_pred HHHh
Confidence 9996
No 19
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=78.86 E-value=12 Score=36.84 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhcc----c-cchhhhHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHhcccc
Q 029180 60 LFPVAVTFFITWWFVQFVDGFFSPLYEHL----G-FDIFGLGFITSLVF-VFLVGVFVSSWLGSTVFWVGEWFIKRMP 131 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~l~pl~~~~----g-~~~pglgll~~l~l-i~~iG~la~~~~g~~l~~~~e~ll~rIP 131 (197)
++|.++..|+..|+..++++.+ |.-+.+ + .-.|.++++++..+ ++++|-.. ++++..+.++++++.+.-+
T Consensus 381 flg~Ii~~~l~gyv~~~l~k~i-p~~~~~~~~~~~~~~Pllt~li~~~l~~~viGp~~-~~i~~~l~~~l~~l~~~~~ 456 (631)
T PRK09765 381 FLGAVVGGLIAGYLMRWVKNHL-RLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPV-AWINNSLTAWLNGLSGSNA 456 (631)
T ss_pred cHHHHHHHHHHHHHHHHHHHHC-CCchhhhhhcCEEeehHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhH
Confidence 6899999999999999999987 432221 1 23577777766544 55788777 5688888888887776544
No 20
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=78.19 E-value=18 Score=34.65 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHhc-cc-chhhH
Q 029180 59 VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVF-VFLVGVFVSSWLGSTVFWVGEWFIK-RM-PFVRH 135 (197)
Q Consensus 59 vllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~l-i~~iG~la~~~~g~~l~~~~e~ll~-rI-PvVks 135 (197)
-++|++++.|+..|+-+++++..-..++. .-.|.+.++++..+ ++++|=+.. +++..+-+.++++.. .. ++-.-
T Consensus 231 sViP~Il~v~~~s~iek~l~K~~P~~l~~--i~~Plltlli~~~l~l~viGPig~-~i~~~i~~~i~~L~~~~~~~ig~~ 307 (473)
T PRK11007 231 QVIPALLAGLALGFIETRLKRIVPDYLYL--VVVPVCSLILAVFLAHALIGPFGR-MIGDGVAFAVKALMTGSFAPIGAA 307 (473)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHH
Confidence 57899999999999999999986443332 12455555554444 335665543 466666666777662 33 45666
Q ss_pred HHHHHHHHHHH
Q 029180 136 LYSASKQISAA 146 (197)
Q Consensus 136 IYssiKql~~~ 146 (197)
++..+.++.=.
T Consensus 308 i~g~~~~~lV~ 318 (473)
T PRK11007 308 LFGFLYAPLVI 318 (473)
T ss_pred HHHHHHHHHHH
Confidence 77777775543
No 21
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=78.01 E-value=19 Score=34.12 Aligned_cols=84 Identities=5% Similarity=0.080 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHhcccchh-hHHH
Q 029180 60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVF-LVGVFVSSWLGSTVFWVGEWFIKRMPFV-RHLY 137 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~-~iG~la~~~~g~~l~~~~e~ll~rIPvV-ksIY 137 (197)
++|.+++.|+..++-+++++.+-..++.+ -.|.+.+++.+.+.+ ++|-+.. +++..+...+.++....|.+ .-+|
T Consensus 233 Vip~Il~g~i~~yiek~~~k~lP~~l~~~--~vP~lt~lv~~~l~~~vigPi~~-~i~~~i~~~~~~l~~~~~~i~g~i~ 309 (462)
T TIGR01992 233 VLPALLAGYVLAVIEKWLRKRVPDAIQLL--VVPPVSLLVTGFLAHAIIGPIGR-LIGNGITSGVTALFTSAAWLGGAIF 309 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 58899999999999888888654433322 245444444433333 3454332 45555555566666666654 4588
Q ss_pred HHHHHHHHH
Q 029180 138 SASKQISAA 146 (197)
Q Consensus 138 ssiKql~~~ 146 (197)
..+.++.=.
T Consensus 310 G~l~~~lV~ 318 (462)
T TIGR01992 310 GLLYAPLVI 318 (462)
T ss_pred HHHHHHHHH
Confidence 888886544
No 22
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=77.46 E-value=21 Score=34.11 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHhcccc-hhhHHH
Q 029180 60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSL-VFVFLVGVFVSSWLGSTVFWVGEWFIKRMP-FVRHLY 137 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l-~li~~iG~la~~~~g~~l~~~~e~ll~rIP-vVksIY 137 (197)
++|++++.|+..++-+++++..-..++.+ -.|.+.+++++ +.++++|=+.. ++|..+-..++++.+.-| +...|+
T Consensus 221 ViPiil~v~~~s~vek~~~K~~P~~l~~i--~~P~ltlli~~pl~l~viGPig~-~i~~~i~~~i~~l~~~~~~i~g~i~ 297 (472)
T PRK09796 221 VIPALVMTWCLSYIERWVDRITPAVTKNF--LKPMLIVLIAAPLAILLIGPIGI-WIGSAISALVYTIHGYLGWLSVAIM 297 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHH
Confidence 68999999999999999988764433321 12333333322 22334444332 355555555566555544 566778
Q ss_pred HHHHHHHHH
Q 029180 138 SASKQISAA 146 (197)
Q Consensus 138 ssiKql~~~ 146 (197)
..+-++.=.
T Consensus 298 g~~~~~lV~ 306 (472)
T PRK09796 298 GALWPLLVM 306 (472)
T ss_pred HHHHHHHHH
Confidence 887776544
No 23
>TIGR01996 PTS-II-BC-sucr PTS system, sucrose-specific IIBC component. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Probab=76.89 E-value=28 Score=32.96 Aligned_cols=84 Identities=14% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHhcccc-hhhHHH
Q 029180 60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITS-LVFVFLVGVFVSSWLGSTVFWVGEWFIKRMP-FVRHLY 137 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~-l~li~~iG~la~~~~g~~l~~~~e~ll~rIP-vVksIY 137 (197)
++|.+++.|+..|+-+++++.+...++.+ -.|.+.+++. ++.++++|.+.. +++..+.+.++.+.+.-+ +..-+|
T Consensus 230 Vip~Il~g~i~~~iek~~~k~~P~~l~~~--~vP~l~~lv~~~l~~~vigp~~~-~i~~~i~~~~~~l~~~~~~i~~~i~ 306 (461)
T TIGR01996 230 VLPVLVAVWILAKIEKFLRKVVPNALDLL--LTPFLTLLITGFLTLLVIGPIGR-WVGDVLTDGLQWLYDLPGGLGGLLF 306 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhh--hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 78999999999999888888775555432 3455555544 333445776654 466677777777766443 455688
Q ss_pred HHHHHHHHH
Q 029180 138 SASKQISAA 146 (197)
Q Consensus 138 ssiKql~~~ 146 (197)
..+.++...
T Consensus 307 G~l~~~Lv~ 315 (461)
T TIGR01996 307 GGLYSLIVI 315 (461)
T ss_pred HHHHHHHHH
Confidence 888887554
No 24
>COG3768 Predicted membrane protein [Function unknown]
Probab=75.85 E-value=17 Score=33.53 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 029180 46 QSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDG 79 (197)
Q Consensus 46 ~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~ 79 (197)
++.+.+.++++..+++=+++..|...|+.+....
T Consensus 60 r~s~~k~~~~a~~vLf~~Av~~q~~qwi~d~~qr 93 (350)
T COG3768 60 RSSFWKIMLGAGGVLFSLAVGLQSVQWIRDLFQR 93 (350)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446688999999999999999988888775443
No 25
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=75.70 E-value=24 Score=33.82 Aligned_cols=83 Identities=11% Similarity=0.140 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhHHH
Q 029180 59 VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITS-LVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLY 137 (197)
Q Consensus 59 vllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~-l~li~~iG~la~~~~g~~l~~~~e~ll~rIPvVksIY 137 (197)
-++|++++.|+..++-+++++++-..++.+ -.|.+.++++ .+.++++|=+. +++|..+-+.+.++... ++..-++
T Consensus 230 sViPiil~v~~~s~iek~~~K~iP~~l~~i--~~P~ltlli~~p~~l~viGP~g-~~i~~~i~~~~~~l~~~-~~~~~i~ 305 (476)
T PRK09586 230 NIIGVLIAAIAGARIERMVRRFMPDDLDMI--LTSLITLLITGALAFLIIMPLG-GWLFEGMSWLFMHLNSN-PFGCAVL 305 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHhhCHHHHHHH--HHHHHHHHHHHHHHHHhHHhHH-HHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 467999999999999999888764444321 1233333332 22244444443 24555444455555443 6667788
Q ss_pred HHHHHHHH
Q 029180 138 SASKQISA 145 (197)
Q Consensus 138 ssiKql~~ 145 (197)
..+.+..=
T Consensus 306 g~~~~~lV 313 (476)
T PRK09586 306 AGLFLIAV 313 (476)
T ss_pred HHHHHHHh
Confidence 88877654
No 26
>PRK15349 type III secretion system protein SsaT; Provisional
Probab=73.32 E-value=63 Score=28.25 Aligned_cols=74 Identities=7% Similarity=0.024 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Q 029180 43 YVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGS 117 (197)
Q Consensus 43 ~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~ 117 (197)
....+++.+.|..|+..-+|+++..+++...++.+.+.. |=.+-+-...|.-.++..+++.+.++.+...+...
T Consensus 171 ~~~~~~~~~~f~~al~lAaP~i~~lll~~~~lGll~R~~-PQlnvf~l~~P~k~~~gl~~l~l~~~~~~~~~~~~ 244 (259)
T PRK15349 171 KYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA-QQLNVFFFSMPLKSILVLLTLLISFPYALHHYLVE 244 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788899999999999999999999999988875 22211112223222233334445666666554443
No 27
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=72.76 E-value=21 Score=35.24 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhH----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--cch
Q 029180 59 VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLG----FITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKR--MPF 132 (197)
Q Consensus 59 vllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglg----ll~~l~li~~iG~la~~~~g~~l~~~~e~ll~r--IPv 132 (197)
.++|..++.|+..|+-+++++.+...++.+ -.|.+. ++...+.++++|-+.. ++|..+-.+++++.+. .|.
T Consensus 101 svip~il~~~~~~~vek~l~k~ip~~l~~~--~~P~~tlli~~i~~~l~~~viGP~g~-~i~~~l~~~i~~l~~~~~~~~ 177 (639)
T PRK15083 101 AMIAGPLGGWAIKHFDRWVDGKIKSGFEML--VNNFSAGIIGMILAILAFLGIGPAVE-VLSKMLAAGVNFMVVHDLLPL 177 (639)
T ss_pred chHHHHHHHHHHHHHHHHHHhhccchhhHh--hhhHHHHHHHHHHHHHHheeeHHHHH-HHHHHHHHHHHHHHhCcchhH
Confidence 689999999999999999888875554432 123322 2233455667777764 5777777778877765 454
Q ss_pred h-hHHHHHHHHHH
Q 029180 133 V-RHLYSASKQIS 144 (197)
Q Consensus 133 V-ksIYssiKql~ 144 (197)
+ .-+.++.-++.
T Consensus 178 ~a~~i~~~~~~~l 190 (639)
T PRK15083 178 TSIFVEPAKILFL 190 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 3 34555555554
No 28
>TIGR00851 mtlA PTS system, mannitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities.The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIC domain of the mannitol PTS transporters.
Probab=71.55 E-value=42 Score=30.65 Aligned_cols=83 Identities=13% Similarity=0.000 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--cch
Q 029180 59 VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFI----TSLVFVFLVGVFVSSWLGSTVFWVGEWFIKR--MPF 132 (197)
Q Consensus 59 vllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll----~~l~li~~iG~la~~~~g~~l~~~~e~ll~r--IPv 132 (197)
-++|+.++.|+..|+-+++++.+-..++.+ -.|.+.++ ...+.++++|=+.. ++|+.+-+.++++.+. -|.
T Consensus 93 sViP~il~v~~~s~iEk~l~K~iP~~l~~i--~~P~ltlli~li~~pl~l~viGPig~-~ig~~i~~~i~~l~~~~~~~~ 169 (338)
T TIGR00851 93 AMIMGPLGGWLIKKTDEFVQGKVKQGFEML--VNNFSAGIIGFILTILAFEGIGPIVK-AISKILAAGVEAIVHAHLLPL 169 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCcHHHHHh--HhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcchhH
Confidence 789999999999999999999874444321 13333332 23444566666654 4677776777777762 343
Q ss_pred -hhHHHHHHHHHH
Q 029180 133 -VRHLYSASKQIS 144 (197)
Q Consensus 133 -VksIYssiKql~ 144 (197)
-.-+....-++.
T Consensus 170 ~~g~i~g~~~~~l 182 (338)
T TIGR00851 170 ASIFVEPAKILFL 182 (338)
T ss_pred HHHHHHHHHHHHH
Confidence 344555555544
No 29
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=70.34 E-value=51 Score=27.72 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=27.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 029180 88 LGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEW 125 (197)
Q Consensus 88 ~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ 125 (197)
+|++ |.+.+.+..+.|-.+|+|+--.+|..+++...+
T Consensus 72 ~GlD-P~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r 108 (173)
T PF08566_consen 72 MGLD-PFMVYGLATLACGALGWLVGPSLGNQVFRLLNR 108 (173)
T ss_pred cCcC-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 3555 334444556678999999999999998888775
No 30
>TIGR01400 fliR flagellar biosynthetic protein FliR. This model recognizes the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT.
Probab=68.10 E-value=80 Score=27.33 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 42 CYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 42 ~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
...+.+.+.+.|..|+..-+|+++...++.-.++.+.+..
T Consensus 159 ~~~~~~~~~~~f~~a~~lAaPvi~~~ll~~~~lGll~R~~ 198 (245)
T TIGR01400 159 FELILKALSDMFLLGLLLALPIIAALLLVNLVLGLVNRAA 198 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455666788999999999999999999999999988875
No 31
>PRK05415 hypothetical protein; Provisional
Probab=66.36 E-value=76 Score=29.31 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDG 79 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~ 79 (197)
.++.|.+++..++=+++..+ ..|+.+.+..
T Consensus 66 w~~~~~~~l~~l~~~~~~~~-~~~i~~~~~~ 95 (341)
T PRK05415 66 WRKLLWGGLGLLGSLVVGQA-VQWLRDAFQR 95 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 36668888888877777777 6666554433
No 32
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998).
Probab=66.32 E-value=45 Score=32.11 Aligned_cols=85 Identities=7% Similarity=0.031 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHH-HHhHhhhhhhhhccc-c-chhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccc-hhhH
Q 029180 60 LFPVAVTFFITWWFV-QFVDGFFSPLYEHLG-F-DIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMP-FVRH 135 (197)
Q Consensus 60 llPl~lTi~Il~~l~-~~i~~~l~pl~~~~g-~-~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~rIP-vVks 135 (197)
++|.++..|+..|+. ++.+..+-..+..++ . -.|.+.+++.+.+-+++|.+-. ++++.+-+..+.+.+.-| +-.-
T Consensus 135 V~~~Il~g~i~a~l~nk~~~k~lP~~l~~f~G~rfvPiit~lv~~~l~~i~~~iwp-~i~~~i~~~~~~l~~~~~~~g~~ 213 (502)
T TIGR02002 135 VFGGIIIGAIAAYCYNRFYNIKLPEYLGFFAGKRFVPIITGLAAIVTGIVLSFIWP-PVQDALNTFSHWAAYQNPVVAFF 213 (502)
T ss_pred cHHHHHHHHHHHHHHHHHhcccCcHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCcHHHHH
Confidence 689999999999999 677776655555552 2 3566666655555444555543 466666666666665554 5566
Q ss_pred HHHHHHHHHH
Q 029180 136 LYSASKQISA 145 (197)
Q Consensus 136 IYssiKql~~ 145 (197)
+|..+.++.-
T Consensus 214 i~G~l~r~Lv 223 (502)
T TIGR02002 214 IFGFIERSLI 223 (502)
T ss_pred HHHHHHHHHH
Confidence 7888777543
No 33
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=65.73 E-value=34 Score=32.84 Aligned_cols=69 Identities=14% Similarity=0.049 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhh-----hhhccccchhhhHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHhccc
Q 029180 59 VLFPVAVTFFITWWFVQFVDGFFSP-----LYEHLGFDIFGLGFITSLVF-VFLVGVFVSSWLGSTVFWVGEWFIKRM 130 (197)
Q Consensus 59 vllPl~lTi~Il~~l~~~i~~~l~p-----l~~~~g~~~pglgll~~l~l-i~~iG~la~~~~g~~l~~~~e~ll~rI 130 (197)
-++|.+++.|+..|+.+++.++.-| +.+. +-.|.++++++..+ ++++|=... +++..+.+++.++...-
T Consensus 228 gflg~Il~g~~~gyv~k~lkki~~p~~~p~~~~~--~~~Pllt~li~~~l~~~viGP~~~-~i~~~l~~~l~~l~~~~ 302 (482)
T PRK11404 228 GFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGS--MLIPFVTLLVFGVLTYYVIGPVMS-DLMGGLLHFLNTIPPSM 302 (482)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCcchhhhcce--eeHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence 5789999999999999999987622 2221 23566666655444 456777765 56777777777766543
No 34
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=65.21 E-value=26 Score=27.19 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcc--ccchhhhHHHHHHHHHHHHHHHHHh
Q 029180 50 SKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHL--GFDIFGLGFITSLVFVFLVGVFVSS 113 (197)
Q Consensus 50 ~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~--g~~~pglgll~~l~li~~iG~la~~ 113 (197)
-|..+.|.=+++=..+.+.+-.+.++.+.-...|++... ..+...++.+ +++..+++|++|++
T Consensus 41 lrr~l~~~~Fi~Rt~~FIlicAFGYGll~v~~tP~l~~~L~~~~~~~l~~~-vl~~F~~iG~lAqR 105 (106)
T PF11872_consen 41 LRRLLSGYHFILRTLAFILICAFGYGLLIVWLTPLLARQLAQLPNYWLAPV-VLLSFILIGVLAQR 105 (106)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH-HHHHHHHHHHHhcc
Confidence 344566666777777777777788888888888877432 1122223333 33445678999875
No 35
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.61 E-value=28 Score=29.22 Aligned_cols=30 Identities=37% Similarity=0.467 Sum_probs=22.2
Q ss_pred cccccccCCCCCCCCCCCCC-CCCCCCCcch
Q 029180 9 SIPLSQAENGGEDPEDPVKS-PPTSSASSTR 38 (197)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 38 (197)
.+|-+++|+-..|+.++++. -|+++.+.+|
T Consensus 56 ~~~npr~es~~~~~~e~v~e~qP~~St~~t~ 86 (181)
T KOG3249|consen 56 VIPNPRAESFDDDDDEDVPEKQPPSSTRWTR 86 (181)
T ss_pred ecCCCchhhccCCccccCchhcCCccccccc
Confidence 56888999988877777653 4666667776
No 36
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=62.27 E-value=65 Score=24.27 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Q 029180 50 SKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKR 129 (197)
Q Consensus 50 ~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~r 129 (197)
.+.+.-=|+.-+|-++.--+++-+++++... ...=+ .-+++.+=++.++..=++...|.|..++++.|+++.+
T Consensus 11 ~qaL~liLilSlPpvivAsvvGllVslvQA~----TQiQd---QTl~f~iKLl~V~~tl~lt~~Wlg~~ll~fa~~i~~~ 83 (89)
T COG4794 11 SQALWLILILSLPPVIVASVVGLLVSLVQAL----TQIQD---QTLPFGIKLLAVSATLFLTAGWLGATLLNFAEQIFLN 83 (89)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH----HHHHH---hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 3445555666677766555555555444333 21101 1233333334444444556678999999999999999
Q ss_pred cchhh
Q 029180 130 MPFVR 134 (197)
Q Consensus 130 IPvVk 134 (197)
+|..|
T Consensus 84 ~~~~~ 88 (89)
T COG4794 84 IPKAR 88 (89)
T ss_pred hhhcc
Confidence 99754
No 37
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=59.96 E-value=23 Score=23.37 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Q 029180 100 SLVFVFLVGVFVSSWLGSTVFWVG 123 (197)
Q Consensus 100 ~l~li~~iG~la~~~~g~~l~~~~ 123 (197)
..++++++|++..+.+.+.+-+.+
T Consensus 20 ~AilIl~vG~~va~~v~~~~~~~l 43 (53)
T PF05552_consen 20 GAILILIVGWWVAKFVRKLVRRLL 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688899988777765443333
No 38
>PRK05701 fliR flagellar biosynthesis protein FliR; Reviewed
Probab=59.23 E-value=1.2e+02 Score=26.23 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 42 CYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 42 ~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
.....+.+.+.|..|+..-+|+++...+....++.+.+..
T Consensus 161 ~~~~~~~~~~~f~~a~~lAaP~i~~~ll~~~~lGll~R~~ 200 (242)
T PRK05701 161 FLLLAKALSAMFLIGLQLALPIIVLLLLVNLALGLINRTA 200 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455667889999999999999999999999999988876
No 39
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=59.18 E-value=79 Score=24.18 Aligned_cols=82 Identities=15% Similarity=0.258 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh-hccccchhhhHHHHHHHHHHHH----HHHHHhhhhhHHHHHHH
Q 029180 50 SKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLY-EHLGFDIFGLGFITSLVFVFLV----GVFVSSWLGSTVFWVGE 124 (197)
Q Consensus 50 ~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~-~~~g~~~pglgll~~l~li~~i----G~la~~~~g~~l~~~~e 124 (197)
+|=|+.-++-++=+++.+++-.+....+.+.+.... ..-..-...++++++.++++++ |.+.++...+...++.|
T Consensus 18 ~rG~~~~~~~l~~~i~a~~~a~~~~~~~~~~l~~~~~~~~~~~~~~iaf~~~f~~~~~i~~~i~~~l~~~~~~~~~~~~d 97 (146)
T PF02674_consen 18 RRGFIRELFSLIGLIVALFVAFLFYPPLAPFLSNYFSSLSPPFANIIAFIILFVLVYIIVRIIGKLLRRIVKKPFLGWLD 97 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH
Confidence 445666666666666666666666666655554322 0001112234444444444443 44444433334555666
Q ss_pred HHhcccc
Q 029180 125 WFIKRMP 131 (197)
Q Consensus 125 ~ll~rIP 131 (197)
+++.-+.
T Consensus 98 r~lG~~~ 104 (146)
T PF02674_consen 98 RLLGALL 104 (146)
T ss_pred HHHHHHH
Confidence 6665443
No 40
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=57.69 E-value=88 Score=30.39 Aligned_cols=87 Identities=7% Similarity=0.029 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhh-hhhcc-cc-chhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhH-
Q 029180 60 LFPVAVTFFITWWFVQFVDGFFSP-LYEHL-GF-DIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRH- 135 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~l~p-l~~~~-g~-~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~rIPvVks- 135 (197)
++|.+++.++..|+.+...+..-| .+..+ |. -.|.+.+++.+.+-+++.+ -.-.+..+.+.+.+++...+.++.
T Consensus 148 V~ggIi~g~i~a~l~~k~~k~~lP~~l~~f~G~rfvPiit~lv~~~l~~i~~~--iwP~~~~~~~~~~~~~~~~g~ig~~ 225 (530)
T PRK10110 148 ILGAVIAGIIVWMLHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPL--VWPIFAMGISGLGHMINSAGDFGPM 225 (530)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCcHHHHhcCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccHHHHH
Confidence 578889999999999998885334 34443 22 2454444433332222211 234445555566666666555444
Q ss_pred HHHHHHHHHHHhC
Q 029180 136 LYSASKQISAAIS 148 (197)
Q Consensus 136 IYssiKql~~~f~ 148 (197)
+|..+.++.=.+-
T Consensus 226 i~G~l~r~LVp~G 238 (530)
T PRK10110 226 LFGTGERLLLPFG 238 (530)
T ss_pred HHHHHHHHHHHhc
Confidence 8999988765543
No 41
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=57.64 E-value=82 Score=30.48 Aligned_cols=88 Identities=9% Similarity=0.039 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhh-hhhhhhccc-c-chhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhH-
Q 029180 60 LFPVAVTFFITWWFVQFVDGF-FSPLYEHLG-F-DIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRH- 135 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~-l~pl~~~~g-~-~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~rIPvVks- 135 (197)
++|.+++.++..|+.|...++ +-..+..++ . -.|.+.+++.+.+-+++ -.-+..++..++.+.+++...+.++.
T Consensus 139 V~ggIi~g~i~a~i~n~~~k~~lP~~L~ff~G~rfVPiit~li~~~l~~~~--p~~wp~~~~~i~~~~~~i~~~g~~g~f 216 (517)
T TIGR02004 139 VLGAVIVGLIVYKLHNRFYTVQMPDALAFFGGARFVPIISALVLAVVGLVI--PLVWPLFALMIMAIGQLIQRSGIFGPF 216 (517)
T ss_pred hHHHHHHHHHHHHHHHHHccccCchHHHHccCCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 688899999999999999986 433444442 1 24544444333332222 22334555566666666666555444
Q ss_pred HHHHHHHHHHHhCC
Q 029180 136 LYSASKQISAAISP 149 (197)
Q Consensus 136 IYssiKql~~~f~g 149 (197)
+|..+.++.-.+-=
T Consensus 217 iyG~l~rlLIp~GL 230 (517)
T TIGR02004 217 LFGSGERLLLPIGL 230 (517)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999998766543
No 42
>TIGR01183 ntrB nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB.
Probab=55.93 E-value=1.2e+02 Score=25.29 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHH
Q 029180 40 ACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVG 108 (197)
Q Consensus 40 ~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG 108 (197)
..+......+.+.++ |+.+-.-+.+.+=++.....++++.+.|+...+ ..+|.++++-++++.+-.|
T Consensus 14 ~~~~~~~~Tl~r~~~-g~~ia~~ig~~lG~~~~~~~~~~~~~~p~~~~l-~~iP~~~~~pl~~~~fG~g 80 (202)
T TIGR01183 14 GLFWQIIASLTRVAV-GFSIAAIIGIAVGILIGLSKFLNAALDPIFQVL-RTIPPLAWLPIALAAFQDA 80 (202)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHhcC
Confidence 455556666665443 444444444444444456677888888877543 3456555554444444433
No 43
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=55.41 E-value=73 Score=29.23 Aligned_cols=72 Identities=8% Similarity=0.006 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhcc-c-cchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccc
Q 029180 59 VLFPVAVTFFITWWFVQFVDGFFSPLYEHL-G-FDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMP 131 (197)
Q Consensus 59 vllPl~lTi~Il~~l~~~i~~~l~pl~~~~-g-~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~rIP 131 (197)
-++|..++.|+..|+-+++++.+--.++.. + .-.|.+.++++.+..+++|-.. ++++..+-++++.+.+.-+
T Consensus 112 gII~gilag~~~~~lek~ikK~lP~~l~g~~~i~iiP~lt~li~~~~~~vigppi-~~i~~~l~~~l~~l~~~~~ 185 (346)
T TIGR01427 112 GIIAGFLAGYVVKGLQKYIKKKLPQSLRGLKPILIIPLLGTLIVGALIYGINIPV-AYLNYGLSNWLNIMGSPNA 185 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHHHHhCCceeehhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhH
Confidence 356666777777777666665443222210 0 2356667666666666777666 5777777777777766444
No 44
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=55.40 E-value=66 Score=28.66 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 43 YVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 43 ~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
+.+-+.+.|.++..+++.+-..+.++++.++++-++.+.
T Consensus 3 ~il~rYi~r~~l~~~~~~l~~l~~l~~~~~~~~~l~~~~ 41 (356)
T PRK15071 3 GILDRYIGRTILSTIMLTLFMLVGLSGIIKFVDQLRKVG 41 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555777777777777777777788888877666643
No 45
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=54.24 E-value=1.2e+02 Score=29.89 Aligned_cols=83 Identities=12% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHhcccc-hhhHHH
Q 029180 60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVF-VFLVGVFVSSWLGSTVFWVGEWFIKRMP-FVRHLY 137 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~l-i~~iG~la~~~~g~~l~~~~e~ll~rIP-vVksIY 137 (197)
++|.++..|+..++.+++++.+-+.++. .-.|.+.+++++.+ ++++|-+.. +++..+...+..+...-| +...+|
T Consensus 211 vip~Il~~~l~~~iek~~~k~vP~~l~~--~f~Pli~~li~~~l~l~vigPig~-~i~~~i~~~l~~l~~~~~~i~~~ii 287 (610)
T TIGR01995 211 VIPVILAVWLMSYVEKFLKKVIPGALKN--FLTPLLVMLITVPLTLLIIGPLGN-YAGEGISSGILFLYEVSPWLAGALL 287 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4788888888888888888866444432 12344444443332 334565543 456666666666666554 345678
Q ss_pred HHHHHHHH
Q 029180 138 SASKQISA 145 (197)
Q Consensus 138 ssiKql~~ 145 (197)
..+-++.=
T Consensus 288 g~l~~~Lv 295 (610)
T TIGR01995 288 AALWPVLV 295 (610)
T ss_pred HHHHHHHh
Confidence 88777553
No 46
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=51.42 E-value=1.4e+02 Score=26.15 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=11.7
Q ss_pred ccCCCCCCCCCCCCCC
Q 029180 14 QAENGGEDPEDPVKSP 29 (197)
Q Consensus 14 ~~~~~~~~~~~~~~~~ 29 (197)
...++-.||+||..||
T Consensus 14 ~~~~~~l~pddp~vsp 29 (232)
T PF10329_consen 14 SSNDPYLSPDDPAVSP 29 (232)
T ss_pred cccCCCCCCCCcccCc
Confidence 3455678899998776
No 47
>PRK10263 DNA translocase FtsK; Provisional
Probab=51.07 E-value=3.7e+02 Score=29.50 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029180 95 LGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF 126 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~~~g~~l~~~~e~l 126 (197)
+|..+++++++++|++. ..+..+++.++++
T Consensus 161 vGa~LILLlllLIGLiL--lTglSwlsIleri 190 (1355)
T PRK10263 161 SGGTIALLCVWAAGLTL--FTGWSWVTIAEKL 190 (1355)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhHHHHHHHHH
Confidence 35555666677777766 3444455555554
No 48
>TIGR01401 fliR_like_III type III secretion protein SpaR/YscT/HrcT. This model represents members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (TIGRFAMs:TIGR01400).
Probab=50.50 E-value=1.7e+02 Score=25.47 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 41 CCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 41 ~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
......+.+.+.|..|+..-+|+++...+..-.++.+.+..
T Consensus 165 ~~~~~~~~~~~~f~~al~lAaPvi~~~ll~~l~lGllsR~~ 205 (253)
T TIGR01401 165 GLSFVLSQLDQMMALALLLAAPVIIVLFLIELALGLLSRFA 205 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555667888999999999999999999999999888875
No 49
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=49.69 E-value=50 Score=21.24 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 46 QSWISKKFMTGCVVLFPVAVTFFIT 70 (197)
Q Consensus 46 ~~~l~~~Fl~GLlvllPl~lTi~Il 70 (197)
.+++..-+.+|+++++|+.+-+..+
T Consensus 6 ~nfl~Sl~aG~~iVv~~i~~ali~V 30 (39)
T PF06596_consen 6 SNFLLSLVAGAVIVVIPIAGALIFV 30 (39)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhheEEE
Confidence 3444444555559999998766544
No 50
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=48.66 E-value=76 Score=20.84 Aligned_cols=15 Identities=27% Similarity=0.970 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhhhh
Q 029180 102 VFVFLVGVFVSSWLG 116 (197)
Q Consensus 102 ~li~~iG~la~~~~g 116 (197)
++.+.+|+...++.+
T Consensus 15 ~~g~~~G~~lD~~~~ 29 (55)
T PF09527_consen 15 LVGFFLGYWLDKWFG 29 (55)
T ss_pred HHHHHHHHHHHHHcC
Confidence 333444444444333
No 51
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=46.39 E-value=1.7e+02 Score=24.31 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhh
Q 029180 36 STRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWL 115 (197)
Q Consensus 36 ~~~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~ 115 (197)
+-+++......+.+.|++.+.+.++++.+..++.-. + +.-++..++++=.++|.+.+.++
T Consensus 119 ~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~~g~----------~----------~l~~Fa~~l~iGvi~~~~ss~~i 178 (189)
T PF02355_consen 119 SLREAINISIKQTLSRTIDTSLTTLLAALILFFFGG----------G----------SLKGFALTLIIGVIIGTYSSLFI 178 (189)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------C----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------c----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777788888888776666543322111 1 12255556666677888888888
Q ss_pred hhHHHHHHH
Q 029180 116 GSTVFWVGE 124 (197)
Q Consensus 116 g~~l~~~~e 124 (197)
.+.++.+++
T Consensus 179 a~~l~~~l~ 187 (189)
T PF02355_consen 179 ARPLLYWLV 187 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777654
No 52
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.67 E-value=55 Score=28.14 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029180 57 CVVLFPVAVTFFITWWF 73 (197)
Q Consensus 57 LlvllPl~lTi~Il~~l 73 (197)
+++++|+++.+.++.|+
T Consensus 240 l~~l~p~~~~~~~~~~~ 256 (262)
T PF14257_consen 240 LVGLLPWLPLILIIGLL 256 (262)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 53
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=45.36 E-value=1.6e+02 Score=25.49 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHH
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l 119 (197)
.-.+++.|++=++|..+.. +. .....+.++++++.++++|++....-++..
T Consensus 158 flsF~ig~liPLLPf~~~~---------------~~-----~~~~~~s~~~~~~~L~~lG~~~a~~s~~~~ 208 (234)
T cd02433 158 FLLFALGALIPVLPFLFGM---------------SG-----LAALVLSVLLVGLALLATGAVTGLLSGRSP 208 (234)
T ss_pred HHHHHHHHHHHHHHHHHhc---------------ch-----hHHHHHHHHHHHHHHHHHHHHHHhhCCCcH
Confidence 4577899999999964210 00 011134556667778888888766555543
No 54
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=44.66 E-value=2.2e+02 Score=25.02 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITW 71 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~ 71 (197)
+.-.+--|+.+++|..++-++-.
T Consensus 49 ~s~~~~i~lF~~lP~~l~~~~~~ 71 (236)
T PF07136_consen 49 LSLALAIGLFVVLPTFLAGLLKR 71 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778888888877777633
No 55
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=44.52 E-value=1.1e+02 Score=26.59 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCcchHHHH
Q 029180 24 DPVKSPPTSSASSTRQACC 42 (197)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~ 42 (197)
+||..||+||-+.+|+-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (399)
T PRK05122 1 EPVAEPALSGLRLTLRIVS 19 (399)
T ss_pred CCCcchhhccCcccHHHHH
Confidence 5889999999998887665
No 56
>TIGR00852 pts-Glc PTS system, maltose and glucose-specific subfamily, IIC component. permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli. Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters.
Probab=42.73 E-value=2.3e+02 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhh
Q 029180 59 VLFPVAVTFFITWWFVQFVDGFFS 82 (197)
Q Consensus 59 vllPl~lTi~Il~~l~~~i~~~l~ 82 (197)
.++|+++.+|+..+.-++++..+-
T Consensus 66 ~~~~ii~~~~~~~~~~k~~~~~lP 89 (289)
T TIGR00852 66 VVGPILVGAIALALHERFLDKKLP 89 (289)
T ss_pred eeHHHHHHHHHHHHHHHHhhhhCc
Confidence 478999999888888887777653
No 57
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=41.22 E-value=95 Score=23.03 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=13.0
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 029180 29 PPTSSASSTRQACCYVLQSWISKKFMTGCV 58 (197)
Q Consensus 29 ~~~~~~~~~~~~~~~~l~~~l~~~Fl~GLl 58 (197)
-..+|||.+.+-..+ .+.++.++-++
T Consensus 38 Gt~~sAP~~~~l~rk----~~~TTiiaavi 63 (85)
T PF07330_consen 38 GTDPSAPANPRLKRK----ALITTIIAAVI 63 (85)
T ss_pred CCCCCCCCCchHHHH----HHHHHHHHHHH
Confidence 345567666654432 24455554443
No 58
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=40.99 E-value=2e+02 Score=28.20 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhHhhhhhhhhcccc
Q 029180 38 RQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWW---------FVQFVDGFFSPLYEHLGF 90 (197)
Q Consensus 38 ~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~---------l~~~i~~~l~pl~~~~g~ 90 (197)
-+..++....+.+.++.+-.-+++...+.+|++.. +.+.+.+.+.|++..+|.
T Consensus 461 ~r~v~~~~w~r~~~fl~~A~~ii~~~siviw~l~~~~~~~~~~S~l~~~g~~~~P~~~p~g~ 522 (591)
T TIGR00437 461 FRVVFIQTWTRLRSFIKKAGTIIVIGSVLIWFLSSFPGGKILESWLAAIGSIMAPLFVPLGK 522 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHhcC
Confidence 35555566666666666667777777777787766 466677788899887776
No 59
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=40.81 E-value=1.5e+02 Score=24.72 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 029180 59 VLFPVAVTFFITWWF 73 (197)
Q Consensus 59 vllPl~lTi~Il~~l 73 (197)
+++|+++.+.++.++
T Consensus 80 ~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 80 FFMPVALVLLVLSFV 94 (170)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457888888888777
No 60
>PF01313 Bac_export_3: Bacterial export proteins, family 3; InterPro: IPR002191 The fliL operon of Escherichia coli contains seven genes (including fliO, fliP, fliQ and fliR) involved in the biosynthesis and functioning of the flagellar organelle []. The fliO, fliP, fliQ and fliR genes encode highly hydrophobic polypeptides. The fliQ gene product, a small integral membrane protein that contains two putative transmembrane (TM) regions, is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis. Proteins sharing an evolutionary relationship with FliQ have been found in a range of bacteria: these include Yop translocation protein S from Yersinia pestis []; surface antigen-presentation protein SpaQ from Salmonella typhimurium and Shigella flexneri []; and probable translocation protein Y4YM from Rhizobium sp. (strain NGR234) []. All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways [].; GO: 0009306 protein secretion, 0016020 membrane
Probab=40.80 E-value=1.4e+02 Score=21.65 Aligned_cols=34 Identities=6% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 029180 47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGF 80 (197)
Q Consensus 47 ~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~ 80 (197)
...++.+...+...+|+.+.-.+++-+++.+...
T Consensus 5 ~l~r~al~~~l~~~~P~L~~alvvGlvIsi~QA~ 38 (76)
T PF01313_consen 5 DLLRQALWLVLMLSAPVLLVALVVGLVISIFQAA 38 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999888888877766554
No 61
>PRK14762 membrane protein; Provisional
Probab=39.87 E-value=46 Score=19.52 Aligned_cols=16 Identities=25% Similarity=0.729 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 029180 100 SLVFVFLVGVFVSSWL 115 (197)
Q Consensus 100 ~l~li~~iG~la~~~~ 115 (197)
++.++|++|+++-+-+
T Consensus 7 ~i~iifligllvvtgv 22 (27)
T PRK14762 7 AVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566888898875533
No 62
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=39.56 E-value=88 Score=21.64 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 41 CCYVLQSWISKKFMTGCVVLFPVAVTFFITW 71 (197)
Q Consensus 41 ~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~ 71 (197)
.+++..+..|++|.++...-++..+.+.++.
T Consensus 44 ~~~~f~~~fk~nf~~~~~~~~~~~~~~~il~ 74 (77)
T PF04854_consen 44 LFRDFWRAFKQNFKQSLLLGLILLLLLAILY 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666678888888887777777666654
No 63
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=38.98 E-value=1.8e+02 Score=22.49 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh----ccccc-hhhhHHHHHHHHHHHHHH
Q 029180 45 LQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYE----HLGFD-IFGLGFITSLVFVFLVGV 109 (197)
Q Consensus 45 l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~----~~g~~-~pglgll~~l~li~~iG~ 109 (197)
++..++.|+-.|.+++-=++...-.+.-..+.+..+ +-+.+ |..+. .-.+|.+++++.|++++-
T Consensus 31 ~~~tik~Y~~dg~~llgL~i~a~aFi~Va~~a~~ty-~Ei~~Gk~~W~~fg~~v~VGviLLv~vIwLltk 99 (104)
T TIGR03745 31 IMQTIKNYGYDGGILLGLLIAAIAFIGVAYHALGTY-HEIRTGKATWGDFGATVVVGAILLVVIIWLLTK 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcchhhHHhCcchhhhHhHHHHHHHHHHHH
Confidence 344577888888776655555444444444433332 11111 11111 224666666666766654
No 64
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=38.62 E-value=90 Score=26.60 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=11.2
Q ss_pred CCCcchHHHHHHHHHHHHH
Q 029180 33 SASSTRQACCYVLQSWISK 51 (197)
Q Consensus 33 ~~~~~~~~~~~~l~~~l~~ 51 (197)
|||+.+.+.++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~k 20 (200)
T PRK10617 2 GNSDRKPGLIKRLWKWWRT 20 (200)
T ss_pred CCCcCChHHHHHHHHHHHh
Confidence 4445555567777777643
No 65
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=38.47 E-value=1.6e+02 Score=29.88 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHhhhhhhhhccccc
Q 029180 37 TRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWF--------------VQFVDGFFSPLYEHLGFD 91 (197)
Q Consensus 37 ~~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l--------------~~~i~~~l~pl~~~~g~~ 91 (197)
+-+....+...+.+..+.+---++++..+.+|++..+ ...+.+.+.|++.++|++
T Consensus 496 ~~~~v~~~~w~r~~~Fl~~Ag~iI~~~~iviw~l~~~~~~g~~~~~~~~S~l~~ig~~i~Pi~~plG~~ 564 (772)
T PRK09554 496 HLKSLLIQTWQRLKGFVLRAGKVIIIVSIFIGALNSFSLSGKIVDNINDSALASVSRVITPVLKPIGVH 564 (772)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhHHHHHHHHHHHHHhccCCC
Confidence 3456666777777777777778888888888888754 455667788998888774
No 66
>PRK12780 fliR flagellar biosynthesis protein FliR; Reviewed
Probab=38.30 E-value=2.7e+02 Score=24.22 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 42 CYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 42 ~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
.....+.+...|..|+..-+|++++.++..-.++.+.+..
T Consensus 169 ~~~~~~~~~~~f~~al~lAaP~i~~lll~~l~lGll~R~~ 208 (251)
T PRK12780 169 LVQLVDQLSEAFTLALRIASPFIIYSVIVNLAVGLVNKLT 208 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677888999999999999999999999999988876
No 67
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=38.19 E-value=2.8e+02 Score=24.57 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 46 QSWISKKFMTGCVVLFPVAVTFFITWWFV 74 (197)
Q Consensus 46 ~~~l~~~Fl~GLlvllPl~lTi~Il~~l~ 74 (197)
.+.+++.|..=.+.-.-+.+++-++.+..
T Consensus 235 ~~~~~~~~~nP~~~a~~lgli~~~~~~~~ 263 (385)
T PF03547_consen 235 KKSILKLFKNPPLIAIILGLIIGLIPPLR 263 (385)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555555555554443
No 68
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=37.78 E-value=2.8e+02 Score=27.19 Aligned_cols=87 Identities=11% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhh--hhhhhhcc-cc-chhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh---cccc-
Q 029180 60 LFPVAVTFFITWWFVQFVDGF--FSPLYEHL-GF-DIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFI---KRMP- 131 (197)
Q Consensus 60 llPl~lTi~Il~~l~~~i~~~--l~pl~~~~-g~-~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ll---~rIP- 131 (197)
++|.+++.++..|+.|...+. +-..+..+ |. -.|.+.+++.+.+-++.+++-- +++..+-+..+.+. ..-|
T Consensus 142 VfggIi~g~i~a~l~n~~~~~k~lP~~L~ff~G~RfVPilt~lv~i~l~~i~~~iwP-~i~~gI~~~~~~i~~~g~~~~~ 220 (548)
T TIGR02003 142 VFVGIIAGFLGATAYNKYYNYDKLPEALAFFNGKRFVPFVVILRSIFTAIILSLLWP-FIQSGINEFGMWIAASKDSAPI 220 (548)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCcHHHHHccCCcchHhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCccch
Confidence 589999999999999998444 43344444 22 3565555544443333333322 45555555566665 3334
Q ss_pred hhhHHHHHHHHHHHHh
Q 029180 132 FVRHLYSASKQISAAI 147 (197)
Q Consensus 132 vVksIYssiKql~~~f 147 (197)
+-.-+|..+.++.=.+
T Consensus 221 ~g~fiyG~l~rlLIp~ 236 (548)
T TIGR02003 221 LAPFLYGTLERLLLPF 236 (548)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5556888888766443
No 69
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=36.94 E-value=13 Score=28.05 Aligned_cols=24 Identities=8% Similarity=0.371 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 50 SKKFMTGCVVLFPVAVTFFITWWF 73 (197)
Q Consensus 50 ~~~Fl~GLlvllPl~lTi~Il~~l 73 (197)
...++.|++.++=+.+.+|+++++
T Consensus 61 ~~iili~lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYF 84 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEE
Confidence 355788888888888888887764
No 70
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=36.85 E-value=1.7e+02 Score=27.19 Aligned_cols=91 Identities=24% Similarity=0.397 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------------------------hhhhhhhc-ccc--------
Q 029180 45 LQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDG-------------------------FFSPLYEH-LGF-------- 90 (197)
Q Consensus 45 l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~-------------------------~l~pl~~~-~g~-------- 90 (197)
..+++++.+.+|+--.+|+++.-=++.-+-..+++ +.-|++.- +.+
T Consensus 7 ~~~~~~~hlmtGvS~MlP~VvagGil~ai~~~~~g~~~~~~~~~~~~~~~l~~iG~~~f~lmvpvlaayIa~SIa~kpgl 86 (359)
T PRK10478 7 ILKNTRQHLMTGVSHMIPFVVAGGILLAVSVMLYGKGAVPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIADRSAL 86 (359)
T ss_pred HHHHHHHHHHhChhHhHhHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 55778999999999999999875554443322211 01122210 000
Q ss_pred ----------chhhhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHhc--ccchhhHH
Q 029180 91 ----------DIFGLGFITSLVFVFLVGVFVSSWLGS-TVFWVGEWFIK--RMPFVRHL 136 (197)
Q Consensus 91 ----------~~pglgll~~l~li~~iG~la~~~~g~-~l~~~~e~ll~--rIPvVksI 136 (197)
...+.|++-.++.=|+.||+++ ++.| ++-+.++.+.. =+|++.++
T Consensus 87 apg~i~G~~a~~~~~GFlGaii~G~laGy~v~-~lkki~lpk~l~~~~piliiP~l~~l 144 (359)
T PRK10478 87 APCAIGAWVGNSFGAGFFGALIAGIIGGIVVH-YLKKIPVHKVLRSVMPIFIIPIVGTL 144 (359)
T ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-HHHhcCCchhhHhhcceeeeHHHHHH
Confidence 0124677778888889999988 4544 34455555443 45665543
No 71
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=35.78 E-value=1.7e+02 Score=25.57 Aligned_cols=31 Identities=16% Similarity=0.406 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 51 KKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 51 ~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
+.++.=.++.+=....++++..+++.++.+.
T Consensus 5 ~~~l~~f~~~l~~~~~i~~~~~l~~~l~~~~ 35 (354)
T PF03739_consen 5 KEFLKTFLLVLLSFTGIFLIIDLFELLDDFL 35 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666667777777777777764
No 72
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=35.47 E-value=17 Score=30.59 Aligned_cols=14 Identities=57% Similarity=0.957 Sum_probs=12.1
Q ss_pred cCCCCCCCCCCCCC
Q 029180 15 AENGGEDPEDPVKS 28 (197)
Q Consensus 15 ~~~~~~~~~~~~~~ 28 (197)
.||||+||..||..
T Consensus 101 eeNgG~DPit~Vd~ 114 (175)
T PF15446_consen 101 EENGGVDPITPVDP 114 (175)
T ss_pred HHcCCCCCCccCCH
Confidence 58999999999864
No 73
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=35.12 E-value=3.3e+02 Score=24.32 Aligned_cols=26 Identities=8% Similarity=-0.028 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHH
Q 029180 98 ITSLVFVFLVGVFVSSWLGSTVFWVG 123 (197)
Q Consensus 98 l~~l~li~~iG~la~~~~g~~l~~~~ 123 (197)
+.++++-.++|+++..+--++.++..
T Consensus 281 ~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 281 LLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455567788888887777766654
No 74
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=35.08 E-value=2.5e+02 Score=22.83 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=18.4
Q ss_pred cccCcEEEEEeC---C---CCeeEEEEEeeee
Q 029180 154 TAFKEVAIIRHP---R---VGEYAFGFITSTV 179 (197)
Q Consensus 154 ~~f~~VVlVe~P---~---~g~~~iGFvT~~~ 179 (197)
..+++|.+|+|. . +=.++++++-++.
T Consensus 78 ~~~~kvgvvRYnAF~dmGg~LSFslAlLD~~~ 109 (151)
T PF14584_consen 78 NCVQKVGVVRYNAFEDMGGDLSFSLALLDDNN 109 (151)
T ss_pred hccceEEEEEccCcccccccceeeeEEEeCCC
Confidence 578999999976 2 2257777776554
No 75
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=35.03 E-value=1.3e+02 Score=25.52 Aligned_cols=85 Identities=14% Similarity=0.080 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhHHHHHHHHHHHHhCCCCCC-cccCcEEEEEeCCCCeeEEE
Q 029180 95 LGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNT-TAFKEVAIIRHPRVGEYAFG 173 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~rIPvVksIYssiKql~~~f~g~~~~-~~f~~VVlVe~P~~g~~~iG 173 (197)
+|+.+++++-++.++... .+-. +|.=.++.-+|+ |=.+|.+. .+++++ +.-++-.--+-.+...+.++
T Consensus 34 lG~~~Lv~~Sl~~~~~l~-~ip~---~wiLGlLGliPI----~lGi~~l~---~~~~~~e~~~~~~~~~~~~~~~i~~Va 102 (191)
T PF03596_consen 34 LGFTILVLASLLGAFGLL-FIPP---EWILGLLGLIPI----YLGIKALF---SGEDDDEEEAEEKLNSPKSNSLILTVA 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCH---HHHHHHHHHHHH----HHHHHHHH---cCCCccccccccccccccccchhHHhh
Confidence 566555444444444443 2322 333355777887 88888764 333221 11110000011124477888
Q ss_pred EEeeeecCceEEEEEeC
Q 029180 174 FITSTVTLQVLVVYVVY 190 (197)
Q Consensus 174 FvT~~~~~~~~vVfvP~ 190 (197)
++|=-...|+.-||+|-
T Consensus 103 ~iTiAnGgDNigIYiP~ 119 (191)
T PF03596_consen 103 AITIANGGDNIGIYIPL 119 (191)
T ss_pred hhhhhcCCCeEEEeehh
Confidence 88766666777799993
No 76
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=34.91 E-value=1.3e+02 Score=19.69 Aligned_cols=33 Identities=6% Similarity=-0.047 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCeeEEEEEeeeecCceEEEEEeC
Q 029180 158 EVAIIRHPRVGEYAFGFITSTVTLQVLVVYVVY 190 (197)
Q Consensus 158 ~VVlVe~P~~g~~~iGFvT~~~~~~~~vVfvP~ 190 (197)
..|-+.++.+|.|--|-|++....+.|.|+.++
T Consensus 7 ~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~ 39 (61)
T smart00743 7 DRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLT 39 (61)
T ss_pred CEEEEEECCCCEEEEEEEEEECCCCEEEEEECC
Confidence 478888888999999999998875678888886
No 77
>PRK00523 hypothetical protein; Provisional
Probab=34.38 E-value=95 Score=22.52 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcccchhhHHHHHHHHHHHHhC
Q 029180 104 VFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAIS 148 (197)
Q Consensus 104 i~~iG~la~~~~g~~l~~~~e~ll~rIPvVksIYssiKql~~~f~ 148 (197)
++++|.+.--++.| +++++-+..=|=+. =+.+|.+..++.
T Consensus 14 ~li~G~~~Gffiar---k~~~k~l~~NPpin--e~mir~M~~QMG 53 (72)
T PRK00523 14 LLIVGGIIGYFVSK---KMFKKQIRENPPIT--ENMIRAMYMQMG 53 (72)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHCcCCC--HHHHHHHHHHhC
Confidence 46667666666666 45666665333322 234444444444
No 78
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=33.53 E-value=4.2e+02 Score=25.06 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=22.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029180 35 SSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFV 77 (197)
Q Consensus 35 ~~~~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i 77 (197)
++.+....+++.+.+++..-.-.+. .|-+||+++..
T Consensus 226 ~~~~~~~l~~l~~~~~~~y~~~~ll-------~WSlWWa~atc 261 (412)
T PF01770_consen 226 SSSRKSVLRLLWKDFKSCYSNPRLL-------LWSLWWAFATC 261 (412)
T ss_pred cchHHHHHHHHHHHHHHHhcCchHH-------HHHHHHHHHHh
Confidence 3344455667777777666555443 47788887754
No 79
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=33.03 E-value=1.5e+02 Score=27.62 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=33.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 029180 35 SSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGF 80 (197)
Q Consensus 35 ~~~~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~ 80 (197)
..+|..+.++++++++..-+--+ ++.|+++...+++++++-.+.+
T Consensus 107 ~~~r~~l~~~Lr~Rf~~~gi~nl-ll~Pfi~i~~il~~ff~y~e~~ 151 (370)
T PF04109_consen 107 NSRRKELAEELRKRFRLAGILNL-LLSPFILIYQILYFFFKYAEEF 151 (370)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH
Confidence 34577777777776654444433 4889999999999999988775
No 80
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=30.50 E-value=3e+02 Score=24.00 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH----HHHHHhHhh
Q 029180 59 VLFPVAVTFFITW----WFVQFVDGF 80 (197)
Q Consensus 59 vllPl~lTi~Il~----~l~~~i~~~ 80 (197)
+++|+.+++.++. |+++.++..
T Consensus 30 ~liPl~inllLf~~~l~~~~~~~~~~ 55 (251)
T PRK04949 30 VILPLLVNILLFGGAFWWLFTQLDAW 55 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655444 444444433
No 81
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=30.08 E-value=51 Score=27.91 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 50 SKKFMTGCVVLFPVAVTFFITWWFVQ 75 (197)
Q Consensus 50 ~~~Fl~GLlvllPl~lTi~Il~~l~~ 75 (197)
--.|++|++..|=+...+|+++.+++
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 35699999999999988888887764
No 82
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.85 E-value=1.3e+02 Score=21.84 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccch
Q 029180 95 LGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPF 132 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~rIPv 132 (197)
+++ +.+++++++|++.-.++.| +..++.+.+=|=
T Consensus 5 lai-l~ivl~ll~G~~~G~fiar---k~~~k~lk~NPp 38 (71)
T COG3763 5 LAI-LLIVLALLAGLIGGFFIAR---KQMKKQLKDNPP 38 (71)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCC
Confidence 444 3455566777766666666 344555554444
No 83
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.47 E-value=1.4e+02 Score=21.36 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=23.1
Q ss_pred HHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Q 029180 69 ITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGS 117 (197)
Q Consensus 69 Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~ 117 (197)
+.+|+++++|.+- +..+-.+|++..+ ++-++++++..++-.
T Consensus 17 ~~~wl~~lld~~s-------p~qW~aIGvi~gi-~~~~lt~ltN~YFK~ 57 (68)
T PF04971_consen 17 AGYWLLQLLDQFS-------PSQWAAIGVIGGI-FFGLLTYLTNLYFKI 57 (68)
T ss_pred HHHHHHHHHhccC-------cccchhHHHHHHH-HHHHHHHHhHhhhhh
Confidence 4567777776653 2233345555443 356677777765543
No 84
>PRK01844 hypothetical protein; Provisional
Probab=27.79 E-value=1.2e+02 Score=21.91 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhHHHHHHHHHHHHhC
Q 029180 102 VFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAIS 148 (197)
Q Consensus 102 ~li~~iG~la~~~~g~~l~~~~e~ll~rIPvVksIYssiKql~~~f~ 148 (197)
++.+++|.+.--++.| +++++-+.+=|=+. =+.+|.+..+..
T Consensus 11 I~~li~G~~~Gff~ar---k~~~k~lk~NPpin--e~mir~Mm~QMG 52 (72)
T PRK01844 11 VVALVAGVALGFFIAR---KYMMNYLQKNPPIN--EQMLKMMMMQMG 52 (72)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHCCCCC--HHHHHHHHHHhC
Confidence 3456666666666665 45666666665433 134444444443
No 85
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=27.77 E-value=3.4e+02 Score=24.29 Aligned_cols=34 Identities=6% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 48 WISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 48 ~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
.+.|.++...++.+=+.+.++++.-+++.++.+.
T Consensus 6 Yi~re~l~~~~~~l~~l~~i~~~~~l~~~l~~~~ 39 (366)
T PRK15120 6 YLVRETLKSQLAILFILLLIFFCQKLVRILGAAV 39 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566677777777666654
No 86
>KOG3044 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=57 Score=29.56 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=38.2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 029180 6 ESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTG 56 (197)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Fl~G 56 (197)
+...++-+|.+|. .|-++---|.|+--+|+.|+-++..+.+++...||.|
T Consensus 224 eea~~e~e~s~~d-~de~~qk~s~~~v~~peErq~Lr~EFtS~M~QkFLsG 273 (307)
T KOG3044|consen 224 EEAKIEAEQSDND-LDEAPQKISTPEVYNPEERQVLRREFTSFMQQKFLSG 273 (307)
T ss_pred hhccchhhhcccc-cccchhhccCcccCChHHHHHHHHHHHHHHHHHhhcC
Confidence 3445566655543 3444446788999999999999999999999999988
No 87
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.17 E-value=84 Score=22.26 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhHHHHHHHHHHHHhC
Q 029180 101 LVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAIS 148 (197)
Q Consensus 101 l~li~~iG~la~~~~g~~l~~~~e~ll~rIPvVksIYssiKql~~~f~ 148 (197)
+++++++|.++-.+++| +++++-+.+=|=+. =+.+|.+..++.
T Consensus 3 iilali~G~~~Gff~ar---~~~~k~l~~NPpin--e~mir~M~~QMG 45 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR---KYMEKQLKENPPIN--EKMIRAMMMQMG 45 (64)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCC--HHHHHHHHHHhC
Confidence 34455566655555555 44555555444322 134444444443
No 88
>PF07670 Gate: Nucleoside recognition; InterPro: IPR011642 This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins (e.g. O00337 from SWISSPROT) []. In the FeoB proteins (e.g. O25396 from SWISSPROT), which are believed to be Fe2+ transporters, it includes the membrane pore region, so the function of this region is likely to be more general than just nucleoside specificity []. This family may represent the pore and gate, with a wide potential range of specificity. Hence its name - Gate.; GO: 0001882 nucleoside binding; PDB: 3TIJ_A.
Probab=26.97 E-value=1.4e+02 Score=21.66 Aligned_cols=32 Identities=25% Similarity=0.707 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHH------HhHhhhhhhhhcccc
Q 029180 59 VLFPVAVTFFITWWFVQ------FVDGFFSPLYEHLGF 90 (197)
Q Consensus 59 vllPl~lTi~Il~~l~~------~i~~~l~pl~~~~g~ 90 (197)
-++|+++...++.|+.. .+.+.+.|+++.+|.
T Consensus 3 ~~~p~i~~~~~l~~iL~~~g~l~~i~~~l~P~~~~lgL 40 (109)
T PF07670_consen 3 RALPIIIPFSILIWILEESGLLERISRLLEPLFRPLGL 40 (109)
T ss_dssp HTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--
T ss_pred eeHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 45666666666666544 566678888877655
No 89
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=26.83 E-value=96 Score=20.35 Aligned_cols=26 Identities=12% Similarity=0.302 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 029180 97 FITSLVFVFLVGVFVSSWLGSTVFWV 122 (197)
Q Consensus 97 ll~~l~li~~iG~la~~~~g~~l~~~ 122 (197)
++++++++.+++++..+.+.+.+-+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~~pl~~l 30 (70)
T PF00672_consen 5 FLIILLLSLLLAWLLARRITRPLRRL 30 (70)
T ss_dssp HHHHHHHHHHHHHH--HTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666655555544433
No 90
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=26.71 E-value=93 Score=19.74 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029180 95 LGFITSLVFVFLVGVFVSSWL 115 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~~~ 115 (197)
.|+++.++-+.++|+++..+.
T Consensus 7 ~GiVLGlipiTl~GlfvaAyl 27 (37)
T PRK00665 7 CGIVLGLIPVTLAGLFVAAWN 27 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHH
Confidence 477888888999999987653
No 91
>PRK10845 colicin V production protein; Provisional
Probab=26.68 E-value=3.4e+02 Score=21.88 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhc
Q 029180 104 VFLVGVFVSSWLGSTVFWVGEWFIK 128 (197)
Q Consensus 104 i~~iG~la~~~~g~~l~~~~e~ll~ 128 (197)
+-+++.+.+..+....+...|+++.
T Consensus 77 ~~i~~~~l~~l~~~~~Lg~~dr~lG 101 (162)
T PRK10845 77 GAIVNYVIGQLVEKTGLSGTDRVLG 101 (162)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHH
Confidence 3344444444444444556666654
No 92
>PRK10494 hypothetical protein; Provisional
Probab=26.31 E-value=4.4e+02 Score=22.95 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 029180 50 SKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEW 125 (197)
Q Consensus 50 ~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~e~ 125 (197)
.+.+++.++.=.|+++.+.++.+++-+...- .-.|..++++.+.++-+++...+++++++.+|+
T Consensus 5 l~K~i~~ll~P~~~~llll~l~~ll~~~~r~------------~r~~~~l~~~~~~~l~l~s~~~~~~~Ll~~LE~ 68 (259)
T PRK10494 5 LKKVIGGLLLPLPLLLLIIGAGLALLWFSRF------------QKTGKIFISIGWLALLLLSLQPVADRLLRPIES 68 (259)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 4556777776666776666666543321110 001211222223334445556777778888875
No 93
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=25.80 E-value=3.4e+02 Score=23.35 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=38.6
Q ss_pred HHhhhhhHHHHHHHHHhcccchhhHHHHHHHHHHHHhCCCCCCcccCcEEEE-EeCCCCeeEEEEEeeee-cCceEEEEE
Q 029180 111 VSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAII-RHPRVGEYAFGFITSTV-TLQVLVVYV 188 (197)
Q Consensus 111 a~~~~g~~l~~~~e~ll~rIPvVksIYssiKql~~~f~g~~~~~~f~~VVlV-e~P~~g~~~iGFvT~~~-~~~~~vVfv 188 (197)
+-+++-+ +|+-.++.-||+ |=.+|-...-=. ++++.-++ -+- +-.++..+.++-+|=-. ..|+.-||+
T Consensus 60 v~~fvp~---e~I~glLGLIPi----~LGik~l~~~d~--d~e~~~~e-~L~~~~~k~lv~tV~~vT~AscG~DNIgvyv 129 (205)
T COG4300 60 VLNFVPE---EWILGLLGLIPI----YLGIKVLILGDD--DGEEEAKE-ELAFKKNKNLVGTVAIVTFASCGADNIGVFV 129 (205)
T ss_pred HHhhCcH---HHHHHHHhHHHH----HHhhHHhhcccC--cCchhhhH-HHHhccccceEEEEEEEEEeccCCcceEEEe
Confidence 4444444 566667888997 888887543211 11111111 111 23456788888888655 445555888
Q ss_pred e
Q 029180 189 V 189 (197)
Q Consensus 189 P 189 (197)
|
T Consensus 130 P 130 (205)
T COG4300 130 P 130 (205)
T ss_pred e
Confidence 8
No 94
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=25.70 E-value=98 Score=19.63 Aligned_cols=21 Identities=33% Similarity=0.787 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 029180 95 LGFITSLVFVFLVGVFVSSWL 115 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~~~ 115 (197)
.|+++.++-+.++|+++..+.
T Consensus 7 ~GiVLGlipvTl~GlfvaAyl 27 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYL 27 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHH
Confidence 477888888999999987653
No 95
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.69 E-value=2.9e+02 Score=24.50 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 029180 96 GFITSLVFVFLVGVF 110 (197)
Q Consensus 96 gll~~l~li~~iG~l 110 (197)
|=..+-+.++++|..
T Consensus 279 g~~~~pl~l~~lG~~ 293 (385)
T PF03547_consen 279 GAAAVPLALFVLGAS 293 (385)
T ss_pred HhhhHHHHHHHHHHH
Confidence 333344445566654
No 96
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=25.53 E-value=2.2e+02 Score=29.70 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcccchhhHHHHHHHHHHHHhCC
Q 029180 104 VFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISP 149 (197)
Q Consensus 104 i~~iG~la~~~~g~~l~~~~e~ll~rIPvVksIYssiKql~~~f~g 149 (197)
++++...-...+-|++-++.|.++.-.=-+--||+++|.+++.|..
T Consensus 467 ~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~ 512 (900)
T TIGR00834 467 VLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQE 512 (900)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444334556777788888888777788899999999998864
No 97
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=25.38 E-value=3.4e+02 Score=21.43 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=29.7
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 27 KSPPTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQ 75 (197)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~ 75 (197)
-+|=|||+.++.++.++ +=.+|.+-.+++++==..+.++.-|.+.
T Consensus 42 ~~~YE~G~~p~g~a~~~----f~~qyyl~ailFvvFDie~~fl~pwav~ 86 (123)
T COG0838 42 LSPYECGNPPFGGARLR----FSVQYYLVAILFVVFDVEVVFLFPWAVS 86 (123)
T ss_pred cCccccCCCCCCccccc----cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35779999999888875 2346677777666644555555555544
No 98
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=25.29 E-value=2.9e+02 Score=20.56 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc-ccchhhH
Q 029180 95 LGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIK-RMPFVRH 135 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~~~g~~l~~~~e~ll~-rIPvVks 135 (197)
+++++++++++++|.++-..+ +.+-+..+.+.+ ++|.+..
T Consensus 10 ~~f~~~~~l~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~ 50 (181)
T PF12729_consen 10 LGFGLIILLLLIVGIVGLYSL-SQINQNVEEIYENNLPSIEL 50 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHH
Confidence 344545555555555543322 234444454443 3555443
No 99
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=25.24 E-value=4.3e+02 Score=22.90 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Q 029180 50 SKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGS 117 (197)
Q Consensus 50 ~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~ 117 (197)
..+++.|++-++|..+. .+. .......++++++.++++|++....-++
T Consensus 162 lsf~lG~liPLlPy~~~---------------~~~-----~~a~~~si~l~~~aL~ilG~~~s~~s~~ 209 (241)
T cd02435 162 LSYFIGGLIPLLPYFFV---------------STV-----GEALLLSVIVTLVALFVFGYVKTWFTGG 209 (241)
T ss_pred HHHHHHHHHHHHHHHHc---------------cch-----hHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 46788888888885311 000 0111345666777788889887765544
No 100
>PRK02463 OxaA-like protein precursor; Provisional
Probab=25.00 E-value=2.2e+02 Score=25.79 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029180 47 SWISKKFMTGCVVLFPVAVTFF 68 (197)
Q Consensus 47 ~~l~~~Fl~GLlvllPl~lTi~ 68 (197)
+..++..+.|+++.+.+++|--
T Consensus 3 ~~~k~~~~~~~~~~~~~~lsgc 24 (307)
T PRK02463 3 KTLKRILFSGLALSMLLTLTGC 24 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHhcc
Confidence 4567778888888888888764
No 101
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.50 E-value=5.5e+02 Score=23.52 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhHhhhhhhhhccccchhhhHHH
Q 029180 51 KKFMTGCVVLFPVAVTFFIT--WWFVQFVDGFFSPLYEHLGFDIFGLGFI 98 (197)
Q Consensus 51 ~~Fl~GLlvllPl~lTi~Il--~~l~~~i~~~l~pl~~~~g~~~pglgll 98 (197)
|.+.+=.-+++|..+.+..+ .-++++++.+++|+.++++..-..+-++
T Consensus 176 k~~~rv~~~~~~~~~li~~L~~~G~~d~~~~~~~pl~~~L~lp~eav~v~ 225 (311)
T COG3366 176 KVFKRVIPVVVPATVLIFFLIELGLFDYVEEFLHPLTNYLPLPPEAVTVV 225 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHhhhcCCCcchHHHH
Confidence 44544455566665554433 3578899999999988876654433333
No 102
>PTZ00243 ABC transporter; Provisional
Probab=24.49 E-value=9.9e+02 Score=26.44 Aligned_cols=30 Identities=7% Similarity=-0.119 Sum_probs=18.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 029180 31 TSSASSTRQACCYVLQSWISKKFMTGCVVL 60 (197)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~l~~~Fl~GLlvl 60 (197)
+.-++|.+-++++.+.+.++..++.+++.-
T Consensus 224 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 253 (1560)
T PTZ00243 224 GPPPTPKRLSLLRTLFAALPYYVWWQIPFK 253 (1560)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777777777766555443
No 103
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.23 E-value=1.8e+02 Score=19.42 Aligned_cols=19 Identities=21% Similarity=0.397 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 029180 95 LGFITSLVFVFLVGVFVSS 113 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~ 113 (197)
+.+.+++++++++|.+.-.
T Consensus 18 ~pl~l~il~~f~~G~llg~ 36 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGW 36 (68)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4555556666777766544
No 104
>PHA01399 membrane protein P6
Probab=23.86 E-value=4.8e+02 Score=22.61 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=4.3
Q ss_pred hhHHHHHHHHH
Q 029180 133 VRHLYSASKQI 143 (197)
Q Consensus 133 VksIYssiKql 143 (197)
++.+.+.++++
T Consensus 104 I~AaWQaISSF 114 (242)
T PHA01399 104 AGAAWQAISSF 114 (242)
T ss_pred HHHHHHHHHHH
Confidence 33333344443
No 105
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=23.74 E-value=1.3e+02 Score=29.60 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--HhcccchhhHH
Q 029180 94 GLGFITSLVFVFLVGVFVSSWLGSTVFWVGEW--FIKRMPFVRHL 136 (197)
Q Consensus 94 glgll~~l~li~~iG~la~~~~g~~l~~~~e~--ll~rIPvVksI 136 (197)
.+|+++++++.|.+|++.|...-+++-+..|+ =+...|+.--|
T Consensus 5 iv~llVilv~~~~~g~~lRkk~~~rI~~LEe~K~el~~lPv~dEi 49 (570)
T COG4477 5 IVALLVILVAAYAVGYLLRKKNYQRIDKLEERKNELLNLPVNDEI 49 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCchhHH
Confidence 56888888999999999998887777776664 23457874433
No 106
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=23.63 E-value=2.5e+02 Score=19.31 Aligned_cols=21 Identities=10% Similarity=0.537 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 53 FMTGCVVLFPVAVTFFITWWFVQF 76 (197)
Q Consensus 53 Fl~GLlvllPl~lTi~Il~~l~~~ 76 (197)
.+.|++. +.+.+|.+.|+--.
T Consensus 35 llrgif~---itlviwt~vwlkll 55 (60)
T PF08196_consen 35 LLRGIFL---ITLVIWTVVWLKLL 55 (60)
T ss_pred HHHHHHH---HHHHHHHHHHHHHH
Confidence 4555543 34566777776443
No 107
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=23.09 E-value=5.4e+02 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=17.5
Q ss_pred hhhhHHHHHH--------HHHHHHHHHHHhhhhhH
Q 029180 92 IFGLGFITSL--------VFVFLVGVFVSSWLGST 118 (197)
Q Consensus 92 ~pglgll~~l--------~li~~iG~la~~~~g~~ 118 (197)
.|.+|+.+++ ..-|++|++...+++-.
T Consensus 188 LPAvGfAmLl~~m~~k~~~~ff~lGF~laayl~l~ 222 (265)
T TIGR00822 188 IVVVGYAMVLRMMFKAYLMPFFYLGFLFAAYTDFS 222 (265)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhCCc
Confidence 5667777653 33577888877776543
No 108
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=23.06 E-value=5.7e+02 Score=23.14 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVD 78 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~ 78 (197)
+.+.|..+++.++=+++.++...|+.+.+.
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~ 42 (289)
T TIGR01620 13 FGKLGLGALGVLFGLAFVLQAVQWIRNLFQ 42 (289)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346688888888777777776666665443
No 109
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=23.06 E-value=5.2e+02 Score=22.66 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhhhh--HHHHHHHHHhcccchh
Q 029180 100 SLVFVFLVGVFVSSWLGS--TVFWVGEWFIKRMPFV 133 (197)
Q Consensus 100 ~l~li~~iG~la~~~~g~--~l~~~~e~ll~rIPvV 133 (197)
.+++=..+|+++..+-|+ ++++.+-.++.-+|.+
T Consensus 109 a~viG~~lGi~ag~~~~~~d~~l~~~~d~l~siP~l 144 (296)
T PRK15111 109 ATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSL 144 (296)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhHHH
Confidence 333344566665443322 2344444445556653
No 110
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=22.94 E-value=1.4e+02 Score=18.95 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhh
Q 029180 61 FPVAVTFFITWWFVQFVDGFFSPL 84 (197)
Q Consensus 61 lPl~lTi~Il~~l~~~i~~~l~pl 84 (197)
.|+++++|++.-+=+-+|++...+
T Consensus 8 FPi~va~yLL~R~E~kld~L~~~i 31 (38)
T PF12841_consen 8 FPIAVAIYLLVRIEKKLDELTESI 31 (38)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999888888776443
No 111
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=22.62 E-value=5.1e+02 Score=26.16 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhHhhhhhhhhcccc
Q 029180 37 TRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWF------------VQFVDGFFSPLYEHLGF 90 (197)
Q Consensus 37 ~~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l------------~~~i~~~l~pl~~~~g~ 90 (197)
+-+........+.+..+.+-.-+++-..+.+|++... ++.+.+++.|++..+|+
T Consensus 485 ~~k~v~~~tW~r~k~Fl~kAgtiI~~~svlIW~Ls~~pp~g~~~~~~S~l~~ig~~l~Plf~plG~ 550 (653)
T COG0370 485 SLKNVLIKTWERSKEFLKKAGTIILAGSVLIWFLSSFPPGGVDNIKDSILAVIGKALEPLFSPLGF 550 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcccCchhhhHHHHHHHHHHHhhhhhcC
Confidence 3445555666666666665555556666666665543 44556677888887776
No 112
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=22.58 E-value=1.5e+02 Score=18.88 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 029180 94 GLGFITSLVFVFLVGVFVSSW 114 (197)
Q Consensus 94 glgll~~l~li~~iG~la~~~ 114 (197)
..|+++.++-+.++|+++..+
T Consensus 6 L~GiVlGli~vtl~Glfv~Ay 26 (37)
T PF02529_consen 6 LSGIVLGLIPVTLAGLFVAAY 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHHHHHHHHHHHH
Confidence 357788888899999987654
No 113
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=22.47 E-value=5.5e+02 Score=22.86 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhh--------ccccchhhhHHHHHHHHHHHHHHHHH
Q 029180 58 VVLFPVAVTFFITWWFVQFVDGFFSPLYE--------HLGFDIFGLGFITSLVFVFLVGVFVS 112 (197)
Q Consensus 58 lvllPl~lTi~Il~~l~~~i~~~l~pl~~--------~~g~~~pglgll~~l~li~~iG~la~ 112 (197)
.+++|+.+-+.+..-++.++.+...|..+ +.++--..+..+..+.+..+.|++.+
T Consensus 27 fvilpLl~ni~L~~gl~~~~~~~~~~wid~Lm~~iPdWl~wLs~v~~~la~L~lll~~~~lfs 89 (250)
T COG2981 27 FVILPLLLNILLWGGLFWLLFSQALPWIDTLMPGIPDWLGWLSYLLWILAVLLLLLVFAFLFS 89 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667666655544444444444333332 22222223344444455555555544
No 114
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=22.44 E-value=2.7e+02 Score=19.17 Aligned_cols=62 Identities=8% Similarity=0.102 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 029180 62 PVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVG 123 (197)
Q Consensus 62 Pl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~l~~~~ 123 (197)
=+..-+|.++|+++.-+.+=.-.-+..+.....+.+++.++.+-+.++..-...++++-+..
T Consensus 11 iiT~GIY~l~W~y~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i~~~~ 72 (75)
T PF14018_consen 11 IITCGIYGLYWLYKIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGNRINEEA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999998776642111111111122344444444455556656566666554433
No 115
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.99 E-value=4e+02 Score=22.83 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=22.6
Q ss_pred hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Q 029180 80 FFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGS 117 (197)
Q Consensus 80 ~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~ 117 (197)
+++|.++. +..+...++.+++.|.+.+|++--.+-+
T Consensus 140 ~~gp~l~~--~~l~~~~Li~t~~~v~LltYf~iP~vs~ 175 (195)
T COG3224 140 LLGPKLGF--LPLPTRVLIGTLCSVSLLTYFVIPLVSR 175 (195)
T ss_pred hhccccCC--CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 3345556777888888888887554443
No 116
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=21.98 E-value=2.2e+02 Score=20.07 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029180 101 LVFVFLVGVFVSSWLGSTVFWVGEWF 126 (197)
Q Consensus 101 l~li~~iG~la~~~~g~~l~~~~e~l 126 (197)
.++.+.+|++++++.-+ +.+.+...
T Consensus 14 AlI~~pLGyl~~~~~~r-~~~~lr~~ 38 (62)
T PF11120_consen 14 ALIFFPLGYLARRWLPR-IRRTLRRR 38 (62)
T ss_pred HHHHHhHHHHHHHHhHH-HHHHHHHH
Confidence 34456699999986654 33334333
No 117
>PF03186 CobD_Cbib: CobD/Cbib protein; InterPro: IPR004485 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon [].; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=21.70 E-value=5.7e+02 Score=22.64 Aligned_cols=42 Identities=17% Similarity=0.356 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 029180 37 TRQACCYVLQSWISKK--------FMTGCVVLFPVAVTFFITWWFVQFVD 78 (197)
Q Consensus 37 ~~~~~~~~l~~~l~~~--------Fl~GLlvllPl~lTi~Il~~l~~~i~ 78 (197)
.+...+.++.+++.+. .+.|++..+-+++..+++.|++..+-
T Consensus 22 HPv~~~g~~~~~l~~~~~~~~~~~~~~G~l~~l~~v~~~~~~~~~l~~~~ 71 (295)
T PF03186_consen 22 HPVVWIGRLISWLERKFNRGSSQQRIAGILAWLLVVLPVLLVAWALLYLL 71 (295)
T ss_pred ChHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665444 47888888877777777777666544
No 118
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=21.43 E-value=2.8e+02 Score=19.04 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=21.2
Q ss_pred cccCcEEEEEeCCCCeeEEEEEeeeec-CceEEE
Q 029180 154 TAFKEVAIIRHPRVGEYAFGFITSTVT-LQVLVV 186 (197)
Q Consensus 154 ~~f~~VVlVe~P~~g~~~iGFvT~~~~-~~~~vV 186 (197)
-+..++|+++||.+..|==|=|++-.. .+.+.|
T Consensus 6 ~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V 39 (55)
T PF09465_consen 6 FAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTV 39 (55)
T ss_dssp S-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEE
T ss_pred ccCCCEEEEECCCCCcEEEEEEEEecccCceEEE
Confidence 345689999999999998888888443 344553
No 119
>PRK04897 heat shock protein HtpX; Provisional
Probab=21.41 E-value=5.7e+02 Score=22.58 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=30.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHhcccch----hhHHHHHHHHHHHHhCCCCCCcccCcEEEEEeCCCCeeEEEE
Q 029180 107 VGVFVSSWLGSTVFWVGEWFIKRMPF----VRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGF 174 (197)
Q Consensus 107 iG~la~~~~g~~l~~~~e~ll~rIPv----VksIYssiKql~~~f~g~~~~~~f~~VVlVe~P~~g~~~iGF 174 (197)
++.+.+-+.+.++..+..+ -.|+ -..+|+.++++.+...- .-.+|-+++-+..+.++.|+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~---a~~v~~~~~p~L~~~v~~la~~~gi-----p~p~v~v~~~~~~NAfa~G~ 115 (298)
T PRK04897 52 IYALIMIFQSTNVVMSMNH---AREVTEEEAPELWHIVEDMAMVAQI-----PMPRVFIIDDPSPNAFATGS 115 (298)
T ss_pred HHHHHHHHhhHHHHHHhCC---CEECChhhhHHHHHHHHHHHHHcCC-----CCCcEEEecCCCCceEEecc
Confidence 3344555566654444322 1222 23467777777765321 23457777655555555543
No 120
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=21.40 E-value=3.7e+02 Score=22.85 Aligned_cols=19 Identities=16% Similarity=0.508 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 029180 102 VFVFLVGVFVSSWLGSTVF 120 (197)
Q Consensus 102 ~li~~iG~la~~~~g~~l~ 120 (197)
.+.+++++...++.|+.+-
T Consensus 102 ~~al~~sl~~~~~~~~~la 120 (202)
T PF07290_consen 102 PVALFLSLFFTRYLGRPLA 120 (202)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3355556666555555333
No 121
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=20.91 E-value=6.2e+02 Score=22.75 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-ccccc-hhhhHHHHHHHHHHHHHHHHHhh
Q 029180 57 CVVLFPVAVTFFITWWFVQFVDGFFSPLYE-HLGFD-IFGLGFITSLVFVFLVGVFVSSW 114 (197)
Q Consensus 57 LlvllPl~lTi~Il~~l~~~i~~~l~pl~~-~~g~~-~pglgll~~l~li~~iG~la~~~ 114 (197)
+-.++|.++.-+ +.+.++..-+-+.|.+. .++.. .+......+...+.++|++....
T Consensus 227 ~Ga~~~~~l~~~-l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~l~~~~~~iG~~~~~l 285 (297)
T COG2177 227 LGALIALALAAL-LLAGYRSSVNNVAPQFGQAFGLLGLGLDEVLLLLGILLLIGVLIAWL 285 (297)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 345677777555 33333333333333332 22221 22234444556677777776543
No 122
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=20.88 E-value=6e+02 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Q 029180 99 TSLVFVFLVGVFVSSWLGSTVFWVGE 124 (197)
Q Consensus 99 ~~l~li~~iG~la~~~~g~~l~~~~e 124 (197)
+++++-.++|+++....-++.++.+|
T Consensus 282 ~l~~~g~~lg~lgs~~s~~r~Lr~~~ 307 (309)
T TIGR00439 282 LLLGFCIALGVVGAWLATTQHLLCFK 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455577888888877777666553
No 123
>COG1286 CvpA Uncharacterized membrane protein, required for colicin V production [General function prediction only]
Probab=20.87 E-value=4.9e+02 Score=21.55 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 029180 50 SKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118 (197)
Q Consensus 50 ~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~li~~iG~la~~~~g~~ 118 (197)
+|=|+..++-++=.++.+|+-+..+.-+...+....++ +....+.+.++.......+|......++..
T Consensus 21 ~RGfi~e~~sl~s~i~a~~vA~~fy~~~~~~~~~~i~~-~~~~~~~~~~~~f~~~l~v~~~i~~~i~~~ 88 (182)
T COG1286 21 RRGFIREVLSLLSWILAAFVASLFYKPLAPLLREYIPY-PNIAIGIAIAIFFVILLIVGAFVNSLIAFL 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC-hhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444333322221111 111234444444444444444444444443
No 124
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=20.80 E-value=4.6e+02 Score=22.34 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHH-HHHHHHHHHHHHHhhhhhHHH
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFIT-SLVFVFLVGVFVSSWLGSTVF 120 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~-~l~li~~iG~la~~~~g~~l~ 120 (197)
+..+++.|++=++|..+.... + ...........++++ +++.++++|++....-++...
T Consensus 142 flsf~~ggliPLlp~~~~~~~----~----------~~~~~~~~~~~s~~~~~~~~L~~~G~~~~~~~~~~~~ 200 (225)
T cd02434 142 FLSFLVFGIIPLLPYLLGLYY----Y----------SQKEIDSVFALSILIFVAFTLFLLGSFKSKLYNGKWI 200 (225)
T ss_pred HHHHHHHHHHHHHHHHHcccc----c----------ccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 356788898888885321100 0 000011111234444 677788889888776666443
No 125
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=20.67 E-value=4.6e+02 Score=22.43 Aligned_cols=60 Identities=7% Similarity=-0.017 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccchhhhHHHHHHH
Q 029180 41 CCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLV 102 (197)
Q Consensus 41 ~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~~pglgll~~l~ 102 (197)
.+.++...+.+ .+.|+++-+-+.+.+-++.....++++.+.|+... ...+|.+.++.+++
T Consensus 58 l~~~l~~Tl~~-~~~g~~la~~igi~lGi~~~~~~~~~~~~~~~~~~-~~siP~~~~~~lli 117 (263)
T PRK11365 58 LWQHLAISSWR-ALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQM-LRNVPHLALIPLVI 117 (263)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCHHHHHHHHH
Confidence 34444444443 33455555566666555555566788888776633 23455444443333
No 126
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.57 E-value=1.2e+02 Score=23.36 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 029180 97 FITSLVFVFLVG 108 (197)
Q Consensus 97 ll~~l~li~~iG 108 (197)
++++++++++++
T Consensus 7 iii~~i~l~~~~ 18 (130)
T PF12273_consen 7 IIIVAILLFLFL 18 (130)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 127
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=20.37 E-value=5.6e+02 Score=24.40 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF 81 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~~l~~~i~~~l 81 (197)
+-..|+.|+..++|++++-++...+.+.+-.-+
T Consensus 110 ~~~~~~~g~~~~lp~~~vs~~~a~~~E~l~~~~ 142 (413)
T TIGR01937 110 IGSKLLLGAKIFLPLLLVSYAVGGTWEVLFAVV 142 (413)
T ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999888877655544
Done!