Query 029180
Match_columns 197
No_of_seqs 114 out of 602
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d31_C Sulfate/molybdate ABC t 59.8 64 0.0022 26.5 9.6 41 95-135 93-135 (295)
2 2gww_B IPAA; protein complex, 27.2 28 0.00094 19.9 1.4 15 134-148 9-23 (30)
3 2rdd_B UPF0092 membrane protei 26.9 30 0.001 20.5 1.6 18 56-73 2-19 (37)
4 1q90_G Cytochrome B6F complex 25.7 75 0.0026 19.3 3.2 21 94-114 6-26 (37)
5 3qf4_B Uncharacterized ABC tra 24.9 4E+02 0.014 24.3 9.6 10 38-47 21-30 (598)
6 2yew_B E1 envelope glycoprotei 21.0 89 0.0031 28.2 4.1 54 19-76 371-424 (427)
7 2l8s_A Integrin alpha-1; trans 19.7 1.3E+02 0.0044 19.7 3.7 24 49-72 12-35 (54)
8 2onk_C Molybdate/tungstate ABC 18.4 3.7E+02 0.013 21.5 8.9 44 94-137 82-127 (284)
9 2ph7_A Uncharacterized protein 18.0 2.5E+02 0.0087 23.5 6.0 68 119-191 92-175 (246)
10 2knc_A Integrin alpha-IIB; tra 17.7 1.5E+02 0.0051 19.3 3.7 24 49-72 15-38 (54)
No 1
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=59.82 E-value=64 Score=26.47 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHhcccchhhH
Q 029180 95 LGFITSLVFVFLVGVFVSS--WLGSTVFWVGEWFIKRMPFVRH 135 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~--~~g~~l~~~~e~ll~rIPvVks 135 (197)
.+.++.+++-+.+|++..+ ..++++++.+=.+..-+|.+-.
T Consensus 93 ~~~~l~~~lg~~~a~~l~~~~~~~~~~~~~~~~~~~~iP~~v~ 135 (295)
T 3d31_C 93 LATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVA 135 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666544 3566677666666667887543
No 2
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=27.18 E-value=28 Score=19.85 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHhC
Q 029180 134 RHLYSASKQISAAIS 148 (197)
Q Consensus 134 ksIYssiKql~~~f~ 148 (197)
..||++.||+..+++
T Consensus 9 nniykaakdvttsls 23 (30)
T 2gww_B 9 NNIYKAAKDVTTSLS 23 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 468999999998875
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=26.90 E-value=30 Score=20.55 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029180 56 GCVVLFPVAVTFFITWWF 73 (197)
Q Consensus 56 GLlvllPl~lTi~Il~~l 73 (197)
|+..++|+++.+.+++|+
T Consensus 2 ~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 2 PMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 344566666665555554
No 4
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=25.69 E-value=75 Score=19.30 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 029180 94 GLGFITSLVFVFLVGVFVSSW 114 (197)
Q Consensus 94 glgll~~l~li~~iG~la~~~ 114 (197)
..|+++.++-+.++|+++..+
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay 26 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAY 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHH
Confidence 357888888899999998764
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=24.91 E-value=4e+02 Score=24.30 Aligned_cols=10 Identities=20% Similarity=-0.047 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 029180 38 RQACCYVLQS 47 (197)
Q Consensus 38 ~~~~~~~l~~ 47 (197)
+...++++.+
T Consensus 21 ~~~~~~~l~~ 30 (598)
T 3qf4_B 21 PTATLRRLLG 30 (598)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 6
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=21.00 E-value=89 Score=28.22 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 19 GEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQF 76 (197)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Fl~GLlvllPl~lTi~Il~~l~~~ 76 (197)
-+-|.| +-.-|..-+++ ..+..+.-++|+. +++|.-.++=+.+.++++...+.+
T Consensus 371 C~PPkD-IV~~p~~h~~~-~~~vS~Taw~W~~--l~gG~~~~~~i~~~i~~~v~~~~~ 424 (427)
T 2yew_B 371 CEPPKD-IVPYAAKNDAE-FPSISTTAWQWLA--TTSGPLTILVVAIIVVVVVSIVVC 424 (427)
T ss_dssp CCCCSS-CCCCCCCSSCC-SSCSSHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchh-hcCCccccCCc-cccchhhhHHHHH--HhcCchHHHHHHHHHHHHhhheee
Confidence 356788 55566666666 6777777889987 889998888888888877766543
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=19.74 E-value=1.3e+02 Score=19.68 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITWW 72 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~~ 72 (197)
+.-..+.||+.+..++..+|=..|
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~GF 35 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIGF 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 345677888877777666665443
No 8
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=18.37 E-value=3.7e+02 Score=21.51 Aligned_cols=44 Identities=9% Similarity=0.006 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHhcccchhhHHH
Q 029180 94 GLGFITSLVFVFLVGVFVSS--WLGSTVFWVGEWFIKRMPFVRHLY 137 (197)
Q Consensus 94 glgll~~l~li~~iG~la~~--~~g~~l~~~~e~ll~rIPvVksIY 137 (197)
..+.++.+++-+.+|++..+ ..++++++..=.+..-+|.+-..+
T Consensus 82 ~~~~~l~~~lg~~~a~~l~~~~~~~~~~~~~~~~~~~~iP~~v~~~ 127 (284)
T 2onk_C 82 LISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGI 127 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666766543 345667766666666788754433
No 9
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=18.02 E-value=2.5e+02 Score=23.54 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=39.3
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHhCCC-CCCcccCcEEEEEeCCCCeeEEEEEee---------------eecCc
Q 029180 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPD-QNTTAFKEVAIIRHPRVGEYAFGFITS---------------TVTLQ 182 (197)
Q Consensus 119 l~~~~e~ll~rIPvVksIYssiKql~~~f~g~-~~~~~f~~VVlVe~P~~g~~~iGFvT~---------------~~~~~ 182 (197)
+-+..+.+++--+.++.| ..+|+++..|+.+ +.+..+-+ +|-.+|-..-||+.- ...++
T Consensus 92 fe~Ay~ef~~sr~~L~~i-~~lkdl~~~F~eGYs~~~~~~~----efvk~~r~~~afv~~i~d~~~~ldv~~r~ase~~~ 166 (246)
T 2ph7_A 92 FEQAYFEYKQSKKFLDAF-DIMREVTDRFFEGYEAEGRYMR----KYTKDGRNYYAFFSTIDDTFEDVDIHLRMVDEVDG 166 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTSEEECSSEE----EEESSSCEEEEEECCHHHHHHTHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHHHHhhhccccCcce----eeccCCceEEEEEEeccccceechHHHHHHhhcCC
Confidence 334455556656666667 8999988888753 11222333 444344445555532 11247
Q ss_pred eEEEEEeCC
Q 029180 183 VLVVYVVYS 191 (197)
Q Consensus 183 ~~vVfvP~t 191 (197)
+|++.+||-
T Consensus 167 e~vivVPtE 175 (246)
T 2ph7_A 167 DYVVIVPTE 175 (246)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEeCC
Confidence 899999963
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=17.74 E-value=1.5e+02 Score=19.27 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029180 49 ISKKFMTGCVVLFPVAVTFFITWW 72 (197)
Q Consensus 49 l~~~Fl~GLlvllPl~lTi~Il~~ 72 (197)
+.-..+.||+.+..++..+|=..|
T Consensus 15 Ii~svl~GLllL~li~~~LwK~GF 38 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAMWKVGF 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 345577788777766666654443
Done!