Query 029180
Match_columns 197
No_of_seqs 114 out of 602
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 14:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 24.4 42 0.0031 17.9 3.2 20 95-114 7-26 (30)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 15.0 2.2E+02 0.016 21.0 9.3 17 101-118 73-89 (447)
3 d1xmaa_ a.4.5.61 (A:) Predicte 14.4 1.1E+02 0.0083 19.7 4.6 43 104-146 10-55 (103)
4 d3b5ha2 b.1.1.4 (A:23-102) Cer 13.6 38 0.0027 22.3 1.6 18 177-195 56-74 (80)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 12.9 1.1E+02 0.0077 17.0 3.2 19 97-115 17-35 (37)
6 d3b60a2 f.37.1.1 (A:10-328) Mu 12.6 2.2E+02 0.016 19.9 8.9 7 75-81 41-47 (319)
7 d1yeza1 b.40.4.12 (A:1-68) Hyp 12.4 47 0.0034 20.4 1.8 13 182-194 35-47 (68)
8 d2axti1 f.23.37.1 (I:1-35) Pho 12.4 1.2E+02 0.0087 16.6 3.4 14 64-77 11-24 (35)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 12.2 3.3E+02 0.024 21.7 10.3 59 56-114 23-84 (444)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 12.2 1.6E+02 0.012 18.0 5.6 23 102-124 9-31 (86)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=24.43 E-value=42 Score=17.95 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 029180 95 LGFITSLVFVFLVGVFVSSW 114 (197)
Q Consensus 95 lgll~~l~li~~iG~la~~~ 114 (197)
.|+++.++=+.+.|+++..+
T Consensus 7 ~GivlGlipiTl~Glfv~Ay 26 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVTAY 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHH
Confidence 47777777888899887654
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.00 E-value=2.2e+02 Score=21.02 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhhhH
Q 029180 101 LVFVFLVGVFVSSWLGST 118 (197)
Q Consensus 101 l~li~~iG~la~~~~g~~ 118 (197)
.+..++.|.++.+ .|+|
T Consensus 73 ~~~~~~~G~l~Dr-~g~r 89 (447)
T d1pw4a_ 73 GFSKFIMGSVSDR-SNPR 89 (447)
T ss_dssp HHHHHHHHHHHHH-SCHH
T ss_pred HHHHHHHHHHHHH-cCch
Confidence 3445667777775 3444
No 3
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=14.45 E-value=1.1e+02 Score=19.71 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=28.6
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHhccc--chhhHHHHHHHHHHHH
Q 029180 104 VFLVGVFVSS-WLGSTVFWVGEWFIKRM--PFVRHLYSASKQISAA 146 (197)
Q Consensus 104 i~~iG~la~~-~~g~~l~~~~e~ll~rI--PvVksIYssiKql~~~ 146 (197)
.+++|+|... .-|-.+.+.++...... +--++||.++|++.+.
T Consensus 10 ~~IL~lL~~~~~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~ 55 (103)
T d1xmaa_ 10 TIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKN 55 (103)
T ss_dssp HHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCccHHHHHHHHHHHcCCeecCCCCchHHHHHHHHHC
Confidence 3455666553 55656777777655432 3449999999998875
No 4
>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.60 E-value=38 Score=22.31 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=12.2
Q ss_pred eeecCceEE-EEEeCCCCCC
Q 029180 177 STVTLQVLV-VYVVYSSPAK 195 (197)
Q Consensus 177 ~~~~~~~~v-VfvP~t~p~~ 195 (197)
+++..++|. ||+| +|.++
T Consensus 56 ~~D~SGeY~CVFl~-~P~~~ 74 (80)
T d3b5ha2 56 SDDQWGEYSCVFLP-EPMGT 74 (80)
T ss_dssp GGGCCEEEEEEEES-TTSCE
T ss_pred cCCCCceEEEEEcC-CCcce
Confidence 344557899 9997 66653
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.86 E-value=1.1e+02 Score=17.02 Aligned_cols=19 Identities=16% Similarity=0.558 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 029180 97 FITSLVFVFLVGVFVSSWL 115 (197)
Q Consensus 97 ll~~l~li~~iG~la~~~~ 115 (197)
+-..+++||++|.+-++++
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3345566778888877654
No 6
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=12.59 E-value=2.2e+02 Score=19.86 Aligned_cols=7 Identities=29% Similarity=0.486 Sum_probs=3.0
Q ss_pred HHhHhhh
Q 029180 75 QFVDGFF 81 (197)
Q Consensus 75 ~~i~~~l 81 (197)
..+|+.+
T Consensus 41 ~~id~~~ 47 (319)
T d3b60a2 41 PLLDDGF 47 (319)
T ss_dssp HHHHSST
T ss_pred HHHHHHh
Confidence 3445443
No 7
>d1yeza1 b.40.4.12 (A:1-68) Hypothetical protein MM1357 {Methanosarcina mazei [TaxId: 2209]}
Probab=12.44 E-value=47 Score=20.43 Aligned_cols=13 Identities=15% Similarity=0.255 Sum_probs=11.0
Q ss_pred ceEEEEEeCCCCC
Q 029180 182 QVLVVYVVYSSPA 194 (197)
Q Consensus 182 ~~~vVfvP~t~p~ 194 (197)
++++||||.+-|-
T Consensus 35 ~g~vvfV~galpG 47 (68)
T d1yeza1 35 EGFVIFVPGTKVG 47 (68)
T ss_dssp TTEEEEEESCCTT
T ss_pred CCEEEEeCCCCCC
Confidence 5799999999874
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.41 E-value=1.2e+02 Score=16.65 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHh
Q 029180 64 AVTFFITWWFVQFV 77 (197)
Q Consensus 64 ~lTi~Il~~l~~~i 77 (197)
++++++-.++|+++
T Consensus 11 vV~fFv~lFiFGFL 24 (35)
T d2axti1 11 VVTFFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 33444444444443
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=12.25 E-value=3.3e+02 Score=21.66 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccccc---hhhhHHHHHHHHHHHHHHHHHhh
Q 029180 56 GCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFD---IFGLGFITSLVFVFLVGVFVSSW 114 (197)
Q Consensus 56 GLlvllPl~lTi~Il~~l~~~i~~~l~pl~~~~g~~---~pglgll~~l~li~~iG~la~~~ 114 (197)
++++=+-..++.+++.++++++.............+ .....++...++..+.+++.+++
T Consensus 23 a~liGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (444)
T d1otsa_ 23 AAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKY 84 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333445555566666666555432222111111 12233344444555566666654
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=12.19 E-value=1.6e+02 Score=18.02 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Q 029180 102 VFVFLVGVFVSSWLGSTVFWVGE 124 (197)
Q Consensus 102 ~li~~iG~la~~~~g~~l~~~~e 124 (197)
++++.+|+...+++.+.+.+..+
T Consensus 9 l~il~i~~~i~~~i~~~~~~~~~ 31 (86)
T d2vv5a3 9 LAIIIVGLIIARMISNAVNRLMI 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666655555443333333
Done!