Query 029181
Match_columns 197
No_of_seqs 149 out of 338
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 3.5E-29 7.5E-34 206.6 15.8 124 71-195 1-134 (198)
2 TIGR02116 toxin_Txe_YoeB toxin 79.3 5.4 0.00012 28.3 5.0 31 92-123 17-47 (80)
3 PF05973 Gp49: Phage derived p 62.5 29 0.00062 24.9 5.7 43 90-132 6-50 (91)
4 PF06251 Caps_synth_GfcC: Caps 53.4 15 0.00033 31.2 3.3 66 68-135 53-131 (229)
5 PF12283 Protein_K: Bacterioph 47.2 55 0.0012 22.3 4.5 36 70-108 5-41 (56)
6 PF14834 GST_C_4: Glutathione 46.3 28 0.00062 27.4 3.5 40 83-126 33-72 (117)
7 TIGR00053 addiction module tox 42.0 25 0.00054 25.1 2.5 33 93-125 23-55 (89)
8 smart00550 Zalpha Z-DNA-bindin 39.2 53 0.0011 22.7 3.7 55 70-127 4-65 (68)
9 PHA00097 K protein K 37.2 94 0.002 21.1 4.4 35 70-107 5-40 (56)
10 cd03715 RT_ZFREV_like RT_ZFREV 34.9 83 0.0018 25.8 4.9 44 86-129 5-57 (210)
11 TIGR02530 flg_new flagellar op 34.2 55 0.0012 24.9 3.3 26 85-110 27-52 (96)
12 COG3880 Modulator of heat shoc 33.6 64 0.0014 27.1 3.9 39 69-113 137-175 (176)
13 cd01645 RT_Rtv RT_Rtv: Reverse 33.0 98 0.0021 25.7 5.0 44 86-129 5-56 (213)
14 PF07624 PSD2: Protein of unkn 32.4 69 0.0015 22.7 3.5 37 73-109 23-59 (76)
15 PF14869 DUF4488: Domain of un 30.2 2.9E+02 0.0064 22.2 7.6 43 119-167 2-45 (133)
16 KOG1513 Nuclear helicase MOP-3 30.0 52 0.0011 34.3 3.3 33 69-106 775-807 (1300)
17 PF05015 Plasmid_killer: Plasm 28.7 2.2E+02 0.0047 20.8 5.7 31 78-108 10-40 (93)
18 PF12644 DUF3782: Protein of u 28.1 1.4E+02 0.0031 19.9 4.4 35 69-109 9-43 (64)
19 PF02295 z-alpha: Adenosine de 27.9 61 0.0013 22.6 2.5 41 69-110 1-49 (66)
20 PF07240 Turandot: Stress-indu 27.7 1.4E+02 0.003 22.2 4.5 38 73-110 11-48 (85)
21 PF10047 DUF2281: Protein of u 26.6 1.4E+02 0.0031 20.6 4.2 46 74-126 2-47 (66)
22 TIGR02683 upstrm_HI1419 probab 26.4 1.6E+02 0.0035 21.4 4.7 38 91-131 18-55 (95)
23 PF00356 LacI: Bacterial regul 23.9 95 0.0021 20.1 2.7 19 88-106 24-42 (46)
24 PF14357 DUF4404: Domain of un 23.9 1.1E+02 0.0023 22.4 3.3 20 88-107 17-36 (85)
25 PLN03014 carbonic anhydrase 23.6 1.4E+02 0.003 27.8 4.6 31 92-122 102-135 (347)
26 PF07278 DUF1441: Protein of u 23.4 1.1E+02 0.0024 25.1 3.5 35 72-106 105-139 (152)
27 TIGR00269 conserved hypothetic 21.2 75 0.0016 23.8 2.1 20 92-111 36-55 (104)
28 PF04536 TPM: TLP18.3, Psb32 a 20.1 1.1E+02 0.0024 22.3 2.8 22 90-111 2-23 (119)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.96 E-value=3.5e-29 Score=206.60 Aligned_cols=124 Identities=34% Similarity=0.577 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCcC-CCCCceEEEEEecccccccc---cCCCccccc
Q 029181 71 ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTSQSLLQT---KRPKFLRPN 146 (197)
Q Consensus 71 ~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt~~P~~s-~lL~G~W~L~YTS~~~~l~~---~~p~~l~~v 146 (197)
+++|++||+++++++||+.+++++|++|+++|++||++||++.|+++ ++|+|+|+|+|||+.++.+. +++++ ..+
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~-~~~ 79 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPG-VRV 79 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccc-ccc
Confidence 47999999999999999999999999999999999999999999998 99999999999999998854 34444 469
Q ss_pred cceEEEEeCCCCeEEEEEeC---CCc---ceEEeEEEEcCCceEEEEEeEEEEee
Q 029181 147 GKIYQAINIDTLRAQNIETW---PFF---NQATANLVPLNSKRVAVKFDYFRIAD 195 (197)
Q Consensus 147 G~i~Q~Id~~~~~v~N~v~f---p~~---~~v~A~~ev~s~kRv~V~Fe~~~i~g 195 (197)
|+|||+||.+++++.|+|.| |++ ..+.|++++.+++|+.|+|+++.+..
T Consensus 80 ~~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~ 134 (198)
T PF04755_consen 80 GRVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKP 134 (198)
T ss_pred cceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcc
Confidence 99999999999999999994 533 48899999999999999999998753
No 2
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=79.30 E-value=5.4 Score=28.35 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcCCCCCce
Q 029181 92 PEDQARVDQIARKLEAVNDIKEPLKSNLLNGK 123 (197)
Q Consensus 92 ~~~r~~I~elI~~LEa~NPt~~P~~s~lL~G~ 123 (197)
++.+++|.++|++|+ .||.+.......|.|.
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~ 47 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGKPEPLKGD 47 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCcccCCCC
Confidence 467889999999887 5666422333345554
No 3
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=62.47 E-value=29 Score=24.89 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCcCCCC--CceEEEEEeccc
Q 029181 90 ASPEDQARVDQIARKLEAVNDIKEPLKSNLL--NGKWELLYTTSQ 132 (197)
Q Consensus 90 as~~~r~~I~elI~~LEa~NPt~~P~~s~lL--~G~W~L~YTS~~ 132 (197)
.++..+++|...++.|+..+|...+.....| +|-|||......
T Consensus 6 L~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 6 LPDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CCHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 3567889999999999988854333333334 699999997665
No 4
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=53.43 E-value=15 Score=31.21 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC-------------CCCcCCCCCceEEEEEeccccc
Q 029181 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK-------------EPLKSNLLNGKWELLYTTSQSL 134 (197)
Q Consensus 68 ~~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt~-------------~P~~s~lL~G~W~L~YTS~~~~ 134 (197)
.+.++.|++|+..+..... ....+..+.+..++++|+....+. .+...++|.|..+|.....+..
T Consensus 53 ~~~~~~~~~ll~~L~~l~~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~~L~ggd~L~vP~rp~~ 130 (229)
T PF06251_consen 53 AEAEQQKQQLLAQLAQLEQ--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYNPLLEGGDRLYVPPRPNT 130 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS-B-ECEEEEE-----SE
T ss_pred HHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCCCcCCCCcEEEECCCCCE
Confidence 3677888888887776544 456677888999999998876542 1222478999999999988764
Q ss_pred c
Q 029181 135 L 135 (197)
Q Consensus 135 l 135 (197)
.
T Consensus 131 V 131 (229)
T PF06251_consen 131 V 131 (229)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=47.20 E-value=55 Score=22.27 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHHHHHHHhc
Q 029181 70 VESFKEELFQAIKPLDR-GAEASPEDQARVDQIARKLEAV 108 (197)
Q Consensus 70 ~~~lK~~LL~ai~~t~R-G~~as~~~r~~I~elI~~LEa~ 108 (197)
.--+|++||-+.+..+| |+-+-.| +|.....+||.+
T Consensus 5 ~tli~qellll~yelnrsgllvene---~i~~~l~~le~l 41 (56)
T PF12283_consen 5 TTLIKQELLLLTYELNRSGLLVENE---EIQSQLKQLEKL 41 (56)
T ss_pred HHHHHHHHHHHHHHhcccccccccH---HHHHHHHHHHHH
Confidence 44589999999999998 8776544 455566666653
No 6
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=46.32 E-value=28 Score=27.41 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=23.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 029181 83 PLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (197)
Q Consensus 83 ~t~RG~~as~~~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~L 126 (197)
...+....|++-+++|++|+...|.+-+...| -|.|.|..
T Consensus 33 ~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~----~LFGewsI 72 (117)
T PF14834_consen 33 RGARKPPLSEAAQAAAQKLIAVAERLLADGGP----NLFGEWSI 72 (117)
T ss_dssp S--------HHHHHHHHHHHHHHHHHTTT--S----STTSS--H
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhccCCC----CccccchH
Confidence 44455778999999999999999999765444 49999964
No 7
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=42.03 E-value=25 Score=25.12 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEE
Q 029181 93 EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWE 125 (197)
Q Consensus 93 ~~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~ 125 (197)
.++.+|.+++++|...+|.|.......|.|.|.
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~~ 55 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEHYKDHPLRGPWK 55 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcccCCccCcCCcC
Confidence 456788888988887555444333335655543
No 8
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=39.22 E-value=53 Score=22.67 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhccCCC-CCCCCH------HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEEE
Q 029181 70 VESFKEELFQAIKPLDR-GAEASP------EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELL 127 (197)
Q Consensus 70 ~~~lK~~LL~ai~~t~R-G~~as~------~~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~L~ 127 (197)
....++++|+++...+. |+.+.. -.+..|.+++..||..+=.-.- .--.+.|++-
T Consensus 4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~---~~~~~~W~i~ 65 (68)
T smart00550 4 QDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQ---GGTPPLWKLT 65 (68)
T ss_pred chHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec---CCCCCceEee
Confidence 45678999999997754 566554 3467899999999998754221 1133788874
No 9
>PHA00097 K protein K
Probab=37.17 E-value=94 Score=21.08 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHHHHHHHh
Q 029181 70 VESFKEELFQAIKPLDR-GAEASPEDQARVDQIARKLEA 107 (197)
Q Consensus 70 ~~~lK~~LL~ai~~t~R-G~~as~~~r~~I~elI~~LEa 107 (197)
.--++++||-+.+..+| |+-+..| +|.....+||.
T Consensus 5 ttli~qelllltyelnrsgllvene---eiqs~lk~le~ 40 (56)
T PHA00097 5 TTLILQELLLLTYELNRSGLLVENE---EIQSQLKKLEK 40 (56)
T ss_pred hHHHHHHHHHHHHhhccccceeccH---HHHHHHHHHHH
Confidence 34589999999999998 8776544 45555566665
No 10
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=34.91 E-value=83 Score=25.83 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCcC-----CCCCc-eEEEEEe
Q 029181 86 RGAEASPEDQARVDQIARKLEAVN---DIKEPLKS-----NLLNG-KWELLYT 129 (197)
Q Consensus 86 RG~~as~~~r~~I~elI~~LEa~N---Pt~~P~~s-----~lL~G-~W~L~YT 129 (197)
+....++++++++.+.|++|+..+ |...|-.+ +.=+| +||++.-
T Consensus 5 ~~~~~~~~~~~~~~~~v~~ll~~G~I~~~~s~~~sp~~~V~Kk~g~~~R~~vD 57 (210)
T cd03715 5 KQYPLPREAREGITPHIQELLEAGILVPCQSPWNTPILPVKKPGGNDYRMVQD 57 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeECCCCCCCCceEEEEeCCCCcceEEEE
Confidence 445678899999999999999876 33333222 23478 9998743
No 11
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=34.17 E-value=55 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCC
Q 029181 85 DRGAEASPEDQARVDQIARKLEAVND 110 (197)
Q Consensus 85 ~RG~~as~~~r~~I~elI~~LEa~NP 110 (197)
.||+..++++-++|++.|.+.+..+-
T Consensus 27 ~R~I~l~~~~~~~i~~av~~A~~KG~ 52 (96)
T TIGR02530 27 ERNISINPDDWKKLLEAVEEAESKGV 52 (96)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 48999999999999999999999874
No 12
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=33.57 E-value=64 Score=27.13 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 029181 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKE 113 (197)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt~~ 113 (197)
++.+||+.|-++|..-+- |+.+.|.+-|..|++.|+..+
T Consensus 137 ~I~~L~e~Lq~~i~~Eef------EeAA~iRDqIr~Lk~k~~~dd 175 (176)
T COG3880 137 KIIALKEALQDLIEREEF------EEAAVIRDQIRALKAKNGGDD 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCC
Confidence 778899999999987644 778889999999999987654
No 13
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=33.01 E-value=98 Score=25.68 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCcC-----CCCCceEEEEEe
Q 029181 86 RGAEASPEDQARVDQIARKLEAVN---DIKEPLKS-----NLLNGKWELLYT 129 (197)
Q Consensus 86 RG~~as~~~r~~I~elI~~LEa~N---Pt~~P~~s-----~lL~G~W~L~YT 129 (197)
|....++++++++.+.|++|-..+ |...|-.+ +.=+|+||+..-
T Consensus 5 ~~~p~~~~~~~~~~~~i~~ll~~g~I~~~~s~~~sp~~~v~K~~g~~R~~~D 56 (213)
T cd01645 5 KQWPLTEEKLEALTELVTEQLKEGHIEPSTSPWNTPVFVIKKKSGKWRLLHD 56 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCceecCCCCCcCcEEEEEcCCCCeEEEec
Confidence 456788999999999999998765 33333322 334799998843
No 14
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=32.38 E-value=69 Score=22.66 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=25.0
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 029181 73 FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVN 109 (197)
Q Consensus 73 lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~N 109 (197)
..+.+.+.+..---|...+..|+..|+++++++++.+
T Consensus 23 ~~~~~~~kl~~YAlGR~~~~~D~~~i~~i~~~~~~~~ 59 (76)
T PF07624_consen 23 FARCFAEKLLTYALGRPLEFSDRCEIDRIVEAFKANG 59 (76)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHcC
Confidence 3333444444334455666799999999999998866
No 15
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=30.21 E-value=2.9e+02 Score=22.23 Aligned_cols=43 Identities=26% Similarity=0.445 Sum_probs=25.4
Q ss_pred CCCceEEEE-EecccccccccCCCccccccceEEEEeCCCCeEEEEEeCC
Q 029181 119 LLNGKWELL-YTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWP 167 (197)
Q Consensus 119 lL~G~W~L~-YTS~~~~l~~~~p~~l~~vG~i~Q~Id~~~~~v~N~v~fp 167 (197)
-|.|.|+|. |-+...-.... + ..+.++-+|. ++|+..|+.-.+
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~g~----l-~~~~~lKilS-~Dgtf~Ni~~~~ 45 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVPGK----L-KPSNVLKILS-DDGTFVNITMIP 45 (133)
T ss_pred CceEEEEEEEEeecCcccCce----E-eecccEEEEc-CCCcEEEEEEeC
Confidence 378999999 55544322211 1 2334566666 457888876654
No 16
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=29.99 E-value=52 Score=34.33 Aligned_cols=33 Identities=36% Similarity=0.554 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 029181 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLE 106 (197)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LE 106 (197)
.++++|++||+.|+.++|-+.. ..+++||++|-
T Consensus 775 r~~~mkeeLL~kverLg~~LP~-----NTLDqLIdelG 807 (1300)
T KOG1513|consen 775 RVERMKEELLDKVERLGRELPP-----NTLDQLIDELG 807 (1300)
T ss_pred HHHHHHHHHHHHHHHhcccCCc-----chHHHHHHHhC
Confidence 4667999999999999988887 66788898884
No 17
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=28.69 E-value=2.2e+02 Score=20.79 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=18.8
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHHHHHhc
Q 029181 78 FQAIKPLDRGAEASPEDQARVDQIARKLEAV 108 (197)
Q Consensus 78 L~ai~~t~RG~~as~~~r~~I~elI~~LEa~ 108 (197)
|+.+..+++-....++-...+...+++|++.
T Consensus 10 l~~l~~~~~~k~~~~~~~~~~~~~L~~L~aa 40 (93)
T PF05015_consen 10 LEKLFEDGKTKKIPADIAKKLRRRLDQLDAA 40 (93)
T ss_pred HHHHHCCCCcCCcCHHHHHHHHHHHHHHHhC
Confidence 4445555544445566667777777777765
No 18
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=28.13 E-value=1.4e+02 Score=19.92 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 029181 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVN 109 (197)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~N 109 (197)
+...++++|-+.... +++++.+.|++.++.|.+..
T Consensus 9 ~i~a~~e~l~~~~~~------lt~e~~~~l~~~~~al~~~~ 43 (64)
T PF12644_consen 9 EIMATKEELEELEER------LTKEDKKRLEEYIDALGARW 43 (64)
T ss_pred HHHHHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHHh
Confidence 456677777776554 78999999999999998764
No 19
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=27.90 E-value=61 Score=22.58 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHH--------HHHHHHHHHHHHHhcCC
Q 029181 69 RVESFKEELFQAIKPLDRGAEASPE--------DQARVDQIARKLEAVND 110 (197)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~~--------~r~~I~elI~~LEa~NP 110 (197)
+..++++++|+.+...+ |..++.- .+.+|+.....||..+-
T Consensus 1 ~~~~~ee~Il~~L~~~g-~~~a~~ia~~~~L~~~kk~VN~~LY~L~k~g~ 49 (66)
T PF02295_consen 1 DMQDLEEKILDFLKELG-GSTATAIAKALGLSVPKKEVNRVLYRLEKQGK 49 (66)
T ss_dssp HHHHHHHHHHHHHHHHT-SSEEEHHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred CchhHHHHHHHHHHhcC-CccHHHHHHHhCcchhHHHHHHHHHHHHHCCC
Confidence 35688999999999988 7766652 26899999999999864
No 20
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=27.72 E-value=1.4e+02 Score=22.25 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=30.4
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 029181 73 FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVND 110 (197)
Q Consensus 73 lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NP 110 (197)
--++|++.-.....-+..++++|+.++++|.+-+..|-
T Consensus 11 ni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~ 48 (85)
T PF07240_consen 11 NIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN 48 (85)
T ss_pred hHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666678899999999999999999983
No 21
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=26.56 E-value=1.4e+02 Score=20.57 Aligned_cols=46 Identities=33% Similarity=0.365 Sum_probs=31.9
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 029181 74 KEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (197)
Q Consensus 74 K~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~L 126 (197)
+++|++.+... +++.+.+|.+.|+=|...++.... ....+.|.|+=
T Consensus 2 ~~~l~~~i~~L------P~~~~~Evldfi~fL~~k~~~~~~-~~~~~~~~~~G 47 (66)
T PF10047_consen 2 EEELLEKIQQL------PEELQQEVLDFIEFLLQKYQQKES-KKKKLLGDWKG 47 (66)
T ss_pred hHHHHHHHHHC------CHHHHHHHHHHHHHHHHhcccccc-cccccccccCC
Confidence 45677777755 678899999999999988843322 23446676653
No 22
>TIGR02683 upstrm_HI1419 probable addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.
Probab=26.37 E-value=1.6e+02 Score=21.42 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEEEEecc
Q 029181 91 SPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTS 131 (197)
Q Consensus 91 s~~~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~L~YTS~ 131 (197)
.+.++.+|...++.|+. ++ .|.--++-+|-|+|++--.
T Consensus 18 d~~~~~kI~~~i~~l~~-g~--~~~~K~l~~~~~ElR~r~g 55 (95)
T TIGR02683 18 DPRAKARILARIDRLAL-GN--FGDVKPVGEGVSELRIDFG 55 (95)
T ss_pred CHHHHHHHHHHHHHHhc-cC--CCCccCCCCCcEEEEecCC
Confidence 45678899999999985 32 2322355567788877443
No 23
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=23.94 E-value=95 Score=20.10 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 029181 88 AEASPEDQARVDQIARKLE 106 (197)
Q Consensus 88 ~~as~~~r~~I~elI~~LE 106 (197)
-..+++.|++|.+++++|-
T Consensus 24 ~~vs~~tr~rI~~~a~~lg 42 (46)
T PF00356_consen 24 PRVSEETRERILEAAEELG 42 (46)
T ss_dssp SSSTHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 3678999999999999873
No 24
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=23.90 E-value=1.1e+02 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 029181 88 AEASPEDQARVDQIARKLEA 107 (197)
Q Consensus 88 ~~as~~~r~~I~elI~~LEa 107 (197)
..+++++|+.+.++++++|.
T Consensus 17 ~~ld~~~~~~L~~l~~dIe~ 36 (85)
T PF14357_consen 17 PPLDEETRAELSSLDDDIEA 36 (85)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 33455555555555555555
No 25
>PLN03014 carbonic anhydrase
Probab=23.63 E-value=1.4e+02 Score=27.78 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCCCCcC--CCCCc
Q 029181 92 PEDQARVDQIARKLEAVND-IKEPLKS--NLLNG 122 (197)
Q Consensus 92 ~~~r~~I~elI~~LEa~NP-t~~P~~s--~lL~G 122 (197)
+..-++|+++..+|+.... .+.+-+. .++.|
T Consensus 102 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~G 135 (347)
T PLN03014 102 TVAAAKVEQITAALQTGTSSDKKAFDPVETIKQG 135 (347)
T ss_pred hHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHH
Confidence 4556889999999986432 2333332 45555
No 26
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=23.42 E-value=1.1e+02 Score=25.13 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=27.9
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 029181 72 SFKEELFQAIKPLDRGAEASPEDQARVDQIARKLE 106 (197)
Q Consensus 72 ~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LE 106 (197)
.+++.|..+-.-..|....+++++.+|.++|+.|-
T Consensus 105 av~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR 139 (152)
T PF07278_consen 105 AVVQVLETLPDILERDAGLPPEQVARVQSVIDDLR 139 (152)
T ss_pred HHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 46666666666777999999999999999988774
No 27
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=21.20 E-value=75 Score=23.77 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 029181 92 PEDQARVDQIARKLEAVNDI 111 (197)
Q Consensus 92 ~~~r~~I~elI~~LEa~NPt 111 (197)
...|.++.+++.+||..+|.
T Consensus 36 ~a~R~~~k~~L~~LE~~~P~ 55 (104)
T TIGR00269 36 LSVRARIRDFLYDLENKKPG 55 (104)
T ss_pred CCchHHHHHHHHHHHHHCcC
Confidence 47799999999999999985
No 28
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=20.11 E-value=1.1e+02 Score=22.29 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCC
Q 029181 90 ASPEDQARVDQIARKLEAVNDI 111 (197)
Q Consensus 90 as~~~r~~I~elI~~LEa~NPt 111 (197)
.|++++++|++.+++||.....
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~ 23 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGV 23 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHhhCC
Confidence 4789999999999999998753
Done!