Query 029181
Match_columns 197
No_of_seqs 149 out of 338
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a6s_A Toxin YOEB; YEFM, antit 60.1 28 0.00097 22.9 6.2 20 92-112 21-40 (84)
2 1z8m_A Conserved hypothetical 57.8 8 0.00028 26.0 3.0 17 96-112 25-41 (88)
3 4gzv_A Hypothetical protein; A 56.6 68 0.0023 25.0 8.6 46 117-167 9-54 (142)
4 3g5o_B Uncharacterized protein 52.9 17 0.00057 25.9 4.2 21 91-112 34-55 (102)
5 3oei_C RELK (toxin RV3358); to 47.6 22 0.00075 25.6 4.1 19 92-111 33-51 (96)
6 2kvu_A MKL/myocardin-like prot 43.7 52 0.0018 23.0 5.3 39 68-112 29-67 (75)
7 2khe_A Toxin RELE, toxin-like 43.5 37 0.0013 21.9 4.5 21 92-112 20-42 (89)
8 3bpq_B Toxin RELE3; protein to 40.2 43 0.0015 21.8 4.5 18 92-109 18-35 (88)
9 1qbj_A Protein (double-strande 35.9 53 0.0018 22.6 4.5 57 71-130 9-73 (81)
10 2heo_A Z-DNA binding protein 1 35.7 10 0.00036 25.0 0.7 53 69-126 7-65 (67)
11 1wmi_A RELE, hypothetical prot 34.2 44 0.0015 21.6 3.7 20 92-112 20-39 (90)
12 3p42_A Predicted protein; beta 34.1 40 0.0014 27.9 4.1 64 69-134 53-129 (236)
13 4i95_A Putative uncharacterize 30.4 1.9E+02 0.0065 22.4 8.8 45 118-167 10-54 (142)
14 1ug7_A 2610208M17RIK protein; 29.7 57 0.002 25.0 4.0 39 69-107 41-79 (128)
15 1qgp_A Protein (double strande 25.6 64 0.0022 21.7 3.4 52 72-126 14-73 (77)
16 1use_A VAsp, vasodilator-stimu 25.0 1.3E+02 0.0046 18.9 4.6 18 65-82 4-21 (45)
17 1uxc_A FRUR (1-57), fructose r 22.3 1.2E+02 0.0042 19.6 4.2 30 77-106 17-46 (65)
18 3op9_A PLI0006 protein; struct 21.7 1.2E+02 0.0042 20.8 4.4 31 75-111 84-114 (114)
19 2lnb_A Z-DNA-binding protein 1 20.1 46 0.0016 23.6 1.6 45 68-112 15-65 (80)
No 1
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=60.15 E-value=28 Score=22.93 Aligned_cols=20 Identities=0% Similarity=0.160 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 029181 92 PEDQARVDQIARKLEAVNDIK 112 (197)
Q Consensus 92 ~~~r~~I~elI~~LEa~NPt~ 112 (197)
....+.|.++++.|+. ||-+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 4456888899988865 6654
No 2
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=57.79 E-value=8 Score=26.02 Aligned_cols=17 Identities=6% Similarity=0.214 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhcCCCC
Q 029181 96 ARVDQIARKLEAVNDIK 112 (197)
Q Consensus 96 ~~I~elI~~LEa~NPt~ 112 (197)
.++.++++.|...||.+
T Consensus 25 ~~~~~~i~~l~~~~p~~ 41 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLD 41 (88)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 56888888886557653
No 3
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=56.61 E-value=68 Score=24.96 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCCCCceEEEEEecccccccccCCCccccccceEEEEeCCCCeEEEEEeCC
Q 029181 117 SNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWP 167 (197)
Q Consensus 117 s~lL~G~W~L~YTS~~~~l~~~~p~~l~~vG~i~Q~Id~~~~~v~N~v~fp 167 (197)
..-|.|.|+|.+--+...-. + +-...+..+-+|..+ |+..|++-.+
T Consensus 9 ~~~L~GvWQ~c~y~~~~~~~---~-~~l~~s~~~KIlS~D-gtF~N~~m~~ 54 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESPDV---P-GALKPSNTFKVLSDD-GRIVNFTIIP 54 (142)
T ss_dssp SCCCCEEEEEEEEEESSTTS---C-CEEEEEEEEEEECTT-SEEEEEECCT
T ss_pred cccceEEeEEeeEeecCCCC---C-ceEeecCceEEECCC-CcEEEEEEeC
Confidence 45699999988544432221 1 111244567777744 7888876544
No 4
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=52.88 E-value=17 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCC
Q 029181 91 SPEDQARVDQIA-RKLEAVNDIK 112 (197)
Q Consensus 91 s~~~r~~I~elI-~~LEa~NPt~ 112 (197)
.+..+..|.+.| ++|+ .||.+
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~~ 55 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPLR 55 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTTT
T ss_pred CHHHHHHHHHHHHHHHH-hCccc
Confidence 456778899998 8885 67753
No 5
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=47.58 E-value=22 Score=25.59 Aligned_cols=19 Identities=5% Similarity=0.282 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 029181 92 PEDQARVDQIARKLEAVNDI 111 (197)
Q Consensus 92 ~~~r~~I~elI~~LEa~NPt 111 (197)
+..+.+|.++|++|+ .||.
T Consensus 33 k~~~krI~~~I~~l~-~nP~ 51 (96)
T 3oei_C 33 RKTARRITRLIGEIQ-RDPF 51 (96)
T ss_dssp HHHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHHHHHH-hCCC
Confidence 466789999999987 5774
No 6
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=43.66 E-value=52 Score=22.95 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 029181 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK 112 (197)
Q Consensus 68 ~~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt~ 112 (197)
-.+.+||++|-. ||+..+--..+-|++|.+.++..++.+
T Consensus 29 lkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 29 MKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp SCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred CcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 378899998765 788876666677888888877766543
No 7
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=43.48 E-value=37 Score=21.95 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHH--hcCCCC
Q 029181 92 PEDQARVDQIARKLE--AVNDIK 112 (197)
Q Consensus 92 ~~~r~~I~elI~~LE--a~NPt~ 112 (197)
+..+++|.+.+++|. ..||..
T Consensus 20 ~~~~~~i~~~i~~l~~~~~~P~~ 42 (89)
T 2khe_A 20 REVARRILRFLRERVATLEDPRS 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHhhccccCCCc
Confidence 556677778777774 445543
No 8
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=40.23 E-value=43 Score=21.77 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 029181 92 PEDQARVDQIARKLEAVN 109 (197)
Q Consensus 92 ~~~r~~I~elI~~LEa~N 109 (197)
+..++.|.++++.++.+.
T Consensus 18 ~~~~~~i~~~i~~~~~l~ 35 (88)
T 3bpq_B 18 GHIRKRIKLIIEECQNSN 35 (88)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 556677888888887653
No 9
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=35.91 E-value=53 Score=22.59 Aligned_cols=57 Identities=9% Similarity=0.314 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhccCCCCCCCCHH--------HHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEEEEec
Q 029181 71 ESFKEELFQAIKPLDRGAEASPE--------DQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTT 130 (197)
Q Consensus 71 ~~lK~~LL~ai~~t~RG~~as~~--------~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~L~YTS 130 (197)
.+..+++|+++....-|-.++.. .|..|.+.+..||..+-...- .. =.|.|++.-..
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~--~~~~W~i~~~~ 73 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AG--TPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SS--SSCEEEEC---
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CC--CCCeeEEeCcH
Confidence 34677788888866544444432 267899999999998743210 01 13899886443
No 10
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=35.75 E-value=10 Score=24.95 Aligned_cols=53 Identities=9% Similarity=0.256 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCH------HHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 029181 69 RVESFKEELFQAIKPLDRGAEASP------EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (197)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~------~~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~L 126 (197)
+..+.++++|+++...++.+..++ -.|..|.++|..||..+-.-.+ =.|.|+|
T Consensus 7 ~m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~-----~~G~y~l 65 (67)
T 2heo_A 7 TGDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSP-----SPKYWSI 65 (67)
T ss_dssp --CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEE-----ETTEEEE
T ss_pred cccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecC-----CCceEee
Confidence 344568889999976433343332 2378999999999998753221 2477875
No 11
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=34.25 E-value=44 Score=21.61 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 029181 92 PEDQARVDQIARKLEAVNDIK 112 (197)
Q Consensus 92 ~~~r~~I~elI~~LEa~NPt~ 112 (197)
+..+++|.+.++.|+. ||..
T Consensus 20 ~~~~~~i~~~i~~L~~-~P~~ 39 (90)
T 1wmi_A 20 KAHYRRFLEFRDILEY-EPVP 39 (90)
T ss_dssp HHHHHHHHHHHHHHTT-CSCC
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 5566788888888854 5643
No 12
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=34.05 E-value=40 Score=27.87 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC-------------CCCcCCCCCceEEEEEeccccc
Q 029181 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK-------------EPLKSNLLNGKWELLYTTSQSL 134 (197)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt~-------------~P~~s~lL~G~W~L~YTS~~~~ 134 (197)
+.+..|++|++.+..... ....++.+.+..++++|+...++. .|....+|.|...|..-..+.+
T Consensus 53 ~~~~qk~~ll~~L~~l~~--~~~~~~a~~~~~l~~~l~~~~~~gR~~v~ld~d~i~~~~~~n~~L~~gd~L~iP~r~~t 129 (236)
T 3p42_A 53 KALKDYQHVMAQLASWEA--EADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVT 129 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTCCCCCCCCCCCCTTSCEESGGGSCBCCEEEEEECCCCCSE
T ss_pred HHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHcCCCCceEEeecCHHHHhcCCCCCCccCCCCEEEECCCCCE
Confidence 556788888888754431 122356778999999999988664 2222467899988887776654
No 13
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=30.42 E-value=1.9e+02 Score=22.42 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=27.4
Q ss_pred CCCCceEEEEEecccccccccCCCccccccceEEEEeCCCCeEEEEEeCC
Q 029181 118 NLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWP 167 (197)
Q Consensus 118 ~lL~G~W~L~YTS~~~~l~~~~p~~l~~vG~i~Q~Id~~~~~v~N~v~fp 167 (197)
.-|.|.|+|..--+...- -|..| +-+..+-+|. ++|+..|++-.|
T Consensus 10 ~~L~GvWQ~C~y~s~~pd---~~g~L-~psn~lKIlS-dDgtF~Ni~m~~ 54 (142)
T 4i95_A 10 AHLQGIWQLCHYVSENPD---IPGVL-KPSNTFKVLS-DDGRIVNFTIRP 54 (142)
T ss_dssp CSCCEEEEEEEEECSSTT---SCCEE-EEEEEEEEEC-TTSEEEEEECCT
T ss_pred ccceeEeEEEEEecCCCC---CceEe-ccCccEEEEc-CCCcEEEEEEec
Confidence 459999999765543321 12112 2344677776 457888987665
No 14
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=29.69 E-value=57 Score=24.98 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHh
Q 029181 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEA 107 (197)
Q Consensus 69 ~~~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa 107 (197)
+-+.+-.+|-..+..++|-...++++++-|.+++.-||-
T Consensus 41 eY~~La~~lkk~~~s~~~~~~fte~qkk~i~KiatcL~l 79 (128)
T 1ug7_A 41 EYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLEL 79 (128)
T ss_dssp HHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH
Confidence 455677777888888888777888899999999988876
No 15
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.63 E-value=64 Score=21.70 Aligned_cols=52 Identities=8% Similarity=0.308 Sum_probs=33.2
Q ss_pred HHHHHHHHHhccCCCCCCCCHH--------HHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEE
Q 029181 72 SFKEELFQAIKPLDRGAEASPE--------DQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (197)
Q Consensus 72 ~lK~~LL~ai~~t~RG~~as~~--------~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~L 126 (197)
+..+++|+++.....|-.++.. .+..|...+..||..+-...--. =.|.|++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~---~~~~W~i 73 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS---SSCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCceEe
Confidence 4467788888877754444432 25789999999999774321111 1288876
No 16
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.05 E-value=1.3e+02 Score=18.90 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.1
Q ss_pred CChhhHHHHHHHHHHHhc
Q 029181 65 FSTKRVESFKEELFQAIK 82 (197)
Q Consensus 65 ~~~~~~~~lK~~LL~ai~ 82 (197)
+...+.+.+|++||+-+.
T Consensus 4 ~~~~dle~~KqEIL~E~R 21 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVK 21 (45)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 444688999999998776
No 17
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=22.32 E-value=1.2e+02 Score=19.64 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=21.0
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 029181 77 LFQAIKPLDRGAEASPEDQARVDQIARKLE 106 (197)
Q Consensus 77 LL~ai~~t~RG~~as~~~r~~I~elI~~LE 106 (197)
+-..+.|.......+++.+++|.+++++|.
T Consensus 17 VSrvLng~~~~~~vs~et~~rI~~aa~~lg 46 (65)
T 1uxc_A 17 ASYVINGKAKQYRVSDKTVEKVMAVVREHN 46 (65)
T ss_dssp HHHHHHTCTTTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 334455544224688999999999998883
No 18
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.71 E-value=1.2e+02 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=23.9
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 029181 75 EELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDI 111 (197)
Q Consensus 75 ~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt 111 (197)
.+++..+.. .++++++.|.++++.++...|+
T Consensus 84 ~~~~~~l~~------~~~~~~~~i~~~i~~i~~~~pn 114 (114)
T 3op9_A 84 KQWLLSLNL------RSEEEIAKIKILVDTVETLYPN 114 (114)
T ss_dssp HHHHHHGGG------SCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHc------CCHHHHHHHHHHHHHHHHHcCC
Confidence 345555554 5789999999999999998763
No 19
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=20.06 E-value=46 Score=23.56 Aligned_cols=45 Identities=7% Similarity=0.199 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCH------HHHHHHHHHHHHHHhcCCCC
Q 029181 68 KRVESFKEELFQAIKPLDRGAEASP------EDQARVDQIARKLEAVNDIK 112 (197)
Q Consensus 68 ~~~~~lK~~LL~ai~~t~RG~~as~------~~r~~I~elI~~LEa~NPt~ 112 (197)
....++|+++|+++...+.-+.+.+ -++.+|+.++.+|-..+-.-
T Consensus 15 ~~~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 15 GREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp CHHHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cccchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 3567899999999998766444332 56899999999998876543
Done!