Query 029181
Match_columns 197
No_of_seqs 149 out of 338
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 14:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029181.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029181hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 46.3 8.6 0.00063 32.7 4.2 42 87-128 21-73 (427)
2 d2gyc31 a.108.1.1 (3:2-48) Rib 28.8 25 0.0018 20.9 3.0 30 74-112 3-32 (47)
3 d1z8ma1 d.298.1.2 (A:1-88) Hyp 25.5 12 0.00085 24.8 1.2 29 95-123 24-52 (88)
4 d1qpza1 a.35.1.5 (A:2-58) Puri 23.8 28 0.002 21.2 2.7 18 89-106 26-43 (57)
5 d2hsga1 a.35.1.5 (A:2-58) Gluc 23.4 28 0.002 21.1 2.7 18 89-106 27-44 (57)
6 d2q22a1 d.365.1.1 (A:8-138) Un 22.8 78 0.0057 22.3 5.6 62 67-130 25-89 (131)
7 d1ztwa1 e.8.1.2 (A:24-278) MML 21.0 32 0.0023 26.3 3.2 43 86-128 39-90 (255)
8 d2a6sa1 d.298.1.1 (A:1-83) Tox 20.8 53 0.0039 21.3 3.9 32 91-124 20-56 (83)
9 d1wmia1 d.298.1.2 (A:1-88) Hyp 20.5 23 0.0017 22.6 2.0 23 91-114 19-41 (88)
10 d1o75a2 b.1.20.1 (A:333-414) T 19.9 11 0.00078 24.4 0.1 23 170-192 52-74 (82)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=46.26 E-value=8.6 Score=32.66 Aligned_cols=42 Identities=19% Similarity=0.416 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCC-----CCCCcCCCC------CceEEEEE
Q 029181 87 GAEASPEDQARVDQIARKLEAVNDI-----KEPLKSNLL------NGKWELLY 128 (197)
Q Consensus 87 G~~as~~~r~~I~elI~~LEa~NPt-----~~P~~s~lL------~G~W~L~Y 128 (197)
--..+++++++|.++|++|+..+-. ..|-.++.+ .|+|||+-
T Consensus 21 q~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 21 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEE
Confidence 4567899999999999999998733 334344433 49999974
No 2
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=28.81 E-value=25 Score=20.92 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=23.6
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 029181 74 KEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK 112 (197)
Q Consensus 74 K~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEa~NPt~ 112 (197)
|+++|++|+...- -+|.+||..+|..-...
T Consensus 3 ke~Ileaia~MSV---------mdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMSV---------MDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSCH---------HHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhhH---------HHHHHHHHHHHHHhCcc
Confidence 7889999987632 67899999999876654
No 3
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=25.50 E-value=12 Score=24.79 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCce
Q 029181 95 QARVDQIARKLEAVNDIKEPLKSNLLNGK 123 (197)
Q Consensus 95 r~~I~elI~~LEa~NPt~~P~~s~lL~G~ 123 (197)
.+.+.+.|..|-..+|-+.-.....|.|+
T Consensus 24 ~~~~~~~i~~L~~~~pl~~~~~dH~L~G~ 52 (88)
T d1z8ma1 24 DSVLNEVILTLRKKEPLDPQFQDHALKGK 52 (88)
T ss_dssp HHHHHHHHHHHTTSCCCCGGGCCEECSGG
T ss_pred HHHHHHHHHHHHcCCCCCccccCccccCc
Confidence 46778888888766665544444445554
No 4
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.76 E-value=28 Score=21.16 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 029181 89 EASPEDQARVDQIARKLE 106 (197)
Q Consensus 89 ~as~~~r~~I~elI~~LE 106 (197)
..+++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 478999999999999884
No 5
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=23.36 E-value=28 Score=21.12 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 029181 89 EASPEDQARVDQIARKLE 106 (197)
Q Consensus 89 ~as~~~r~~I~elI~~LE 106 (197)
..+++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 479999999999999984
No 6
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=22.83 E-value=78 Score=22.28 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHhccCCC---CCCCCHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCceEEEEEec
Q 029181 67 TKRVESFKEELFQAIKPLDR---GAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTT 130 (197)
Q Consensus 67 ~~~~~~lK~~LL~ai~~t~R---G~~as~~~r~~I~elI~~LEa~NPt~~P~~s~lL~G~W~L~YTS 130 (197)
..+.+.++++|...+...+. |+.|...+ ++| ++++.+|..-.-+.+.+.+-.+|-=-|-|.+
T Consensus 25 ~~q~~~L~~eL~~~~~~adw~tiGImA~s~~-~Ai-~ALrs~~~~~~~~~~~d~~~~~G~VfLK~Nq 89 (131)
T d2q22a1 25 PSEKESVRRALILITKLSDYQILGICADTAD-EGL-LAMKTYSHALGYEVPIDLPVVEGPVYIKLNG 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEEEESSHH-HHH-HHHHHHHHHTTCCCC-CCCCCSSSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCHH-HHH-HHHHHHHHHhCCCccCCCCCCCCcEEEEecC
Confidence 45899999999999999996 99987655 333 4455555554455555544445543344433
No 7
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=20.98 E-value=32 Score=26.33 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCcCCC-----C-CceEEEEE
Q 029181 86 RGAEASPEDQARVDQIARKLEAVN---DIKEPLKSNL-----L-NGKWELLY 128 (197)
Q Consensus 86 RG~~as~~~r~~I~elI~~LEa~N---Pt~~P~~s~l-----L-~G~W~L~Y 128 (197)
|-...++++++++.+.|++|...+ |...|-.++. = .|+||++-
T Consensus 39 ~~~~~~~~~~~~l~~~i~~ll~~G~I~p~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 39 KQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTSEEEECCSCBCCEEECCSSSSCCCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhceeeecCCCcccccccccccccceEEEee
Confidence 345578899999999999998876 2223333322 1 37899986
No 8
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=20.83 E-value=53 Score=21.30 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCC-----CCCCcCCCCCceE
Q 029181 91 SPEDQARVDQIARKLEAVNDI-----KEPLKSNLLNGKW 124 (197)
Q Consensus 91 s~~~r~~I~elI~~LEa~NPt-----~~P~~s~lL~G~W 124 (197)
.+...++|+++++++.. ||. |+|+. ..+.|-|
T Consensus 20 d~k~~kkI~~ll~~i~~-~p~~g~gkpE~Lk-g~l~g~w 56 (83)
T d2a6sa1 20 DKRIVKKINELIKDTRR-TPFEGKGKPEPLK-HNLSGFW 56 (83)
T ss_dssp CHHHHHHHHHHHHHHHH-STTSSTTCCEECC-GGGTTCE
T ss_pred CHHHHHHHHHHHHHHHh-CcCCCCCCCcccc-CCCCCEE
Confidence 35677899999999975 553 23333 3477777
No 9
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.49 E-value=23 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCC
Q 029181 91 SPEDQARVDQIARKLEAVNDIKEP 114 (197)
Q Consensus 91 s~~~r~~I~elI~~LEa~NPt~~P 114 (197)
.+.++.+|.+.++.|+. ||.+.|
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~~~ 41 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVPRE 41 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCCHH
T ss_pred CHHHHHHHHHHHHHHHh-CcCcCC
Confidence 46778899999988864 766544
No 10
>d1o75a2 b.1.20.1 (A:333-414) Tp47 lipoprotein, middle and C-terminal domains {Treponema pallidum [TaxId: 160]}
Probab=19.93 E-value=11 Score=24.36 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=18.8
Q ss_pred ceEEeEEEEcCCceEEEEEeEEE
Q 029181 170 NQATANLVPLNSKRVAVKFDYFR 192 (197)
Q Consensus 170 ~~v~A~~ev~s~kRv~V~Fe~~~ 192 (197)
+.+.|+|++-.+..|+|+|++++
T Consensus 52 nvlsadftpgteytvevrfkefg 74 (82)
T d1o75a2 52 NVLSADFTPGTEYTVEVRFKEFG 74 (82)
T ss_dssp EEEEEEECTTCEEEEEEECSSSC
T ss_pred ceeccccCCCceEEEEEEeeccc
Confidence 46778899988999999998653
Done!