Query 029184
Match_columns 197
No_of_seqs 108 out of 218
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 100.0 1.7E-30 3.7E-35 195.8 8.4 95 65-162 1-97 (97)
2 PF05478 Prominin: Prominin; 89.6 1.1 2.5E-05 45.0 7.4 73 51-125 406-492 (806)
3 PF07344 Amastin: Amastin surf 87.8 3.3 7.1E-05 33.3 7.7 91 9-117 64-155 (155)
4 PF05360 YiaAB: yiaA/B two hel 83.4 1.9 4.1E-05 29.0 3.6 44 103-161 2-45 (53)
5 cd07912 Tweety_N N-terminal do 80.2 8.7 0.00019 36.2 8.0 30 59-88 38-68 (418)
6 PF09788 Tmemb_55A: Transmembr 77.7 5 0.00011 35.5 5.2 45 79-124 176-222 (256)
7 PF04906 Tweety: Tweety; Inte 73.3 6.1 0.00013 36.8 4.9 29 62-90 22-50 (406)
8 PTZ00201 amastin surface glyco 55.2 17 0.00037 30.8 3.8 95 10-125 77-178 (192)
9 KOG4433 Tweety transmembrane/c 53.2 20 0.00043 34.6 4.3 53 58-110 41-98 (526)
10 PF01284 MARVEL: Membrane-asso 51.7 99 0.0022 23.1 15.0 63 100-167 80-142 (144)
11 PF11169 DUF2956: Protein of u 51.3 12 0.00026 28.8 2.1 20 96-115 83-102 (103)
12 PF05478 Prominin: Prominin; 50.9 69 0.0015 32.4 8.0 25 95-119 138-163 (806)
13 PF07344 Amastin: Amastin surf 49.5 1.1E+02 0.0023 24.5 7.5 92 51-165 54-150 (155)
14 PRK11383 hypothetical protein; 45.3 61 0.0013 26.4 5.3 25 100-125 10-34 (145)
15 PRK11383 hypothetical protein; 37.6 85 0.0018 25.6 5.1 47 100-161 73-119 (145)
16 COG4682 Predicted membrane pro 32.1 1.3E+02 0.0028 23.9 5.2 31 97-128 7-37 (128)
17 PF07062 Clc-like: Clc-like; 31.8 1.6E+02 0.0034 25.3 6.2 55 64-123 105-162 (211)
18 PF13903 Claudin_2: PMP-22/EMP 30.6 2.4E+02 0.0053 21.4 10.3 27 98-124 103-129 (172)
19 PTZ00201 amastin surface glyco 30.5 3.3E+02 0.0071 23.0 7.8 90 59-168 77-168 (192)
20 PF13903 Claudin_2: PMP-22/EMP 29.8 2.4E+02 0.0052 21.5 6.5 23 55-77 148-170 (172)
21 PF04103 CD20: CD20-like famil 29.2 13 0.00028 28.4 -0.9 89 15-129 4-93 (150)
22 KOG4684 Uncharacterized conser 29.1 81 0.0017 27.7 3.9 46 75-120 184-231 (275)
23 KOG4016 Synaptic vesicle prote 27.0 4.3E+02 0.0093 23.1 11.8 143 10-175 25-172 (233)
24 PF00822 PMP22_Claudin: PMP-22 25.9 1.6E+02 0.0035 22.6 5.0 56 61-129 75-130 (166)
25 KOG4112 Signal peptidase subun 25.2 1E+02 0.0023 23.5 3.5 31 6-36 21-51 (101)
26 PF11085 YqhR: Conserved membr 24.5 89 0.0019 26.2 3.2 34 145-180 67-100 (173)
27 PF14798 Ca_hom_mod: Calcium h 24.0 3.2E+02 0.007 23.9 6.8 64 55-129 13-76 (251)
28 PRK11403 hypothetical protein; 22.8 2E+02 0.0044 22.4 4.7 47 98-159 59-105 (113)
29 PF12340 DUF3638: Protein of u 21.5 61 0.0013 28.2 1.8 18 3-20 49-66 (229)
30 KOG4671 Brain cell membrane pr 20.9 4.2E+02 0.0091 22.6 6.6 110 15-159 19-131 (201)
31 PF07271 Cytadhesin_P30: Cytad 20.8 2.5E+02 0.0054 25.3 5.5 23 145-167 73-95 (279)
32 KOG1292 Xanthine/uracil transp 20.3 1.6E+02 0.0035 28.6 4.5 66 99-175 209-298 (510)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.97 E-value=1.7e-30 Score=195.79 Aligned_cols=95 Identities=38% Similarity=0.720 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 029184 65 GAFLFLLSSESLLMGVTKCMCFGRPLAP--GGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCE 142 (197)
Q Consensus 65 ~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~--~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~ 142 (197)
+|++||+++|+++|+++||+||+++.+| +++|+++++||++||++|+|||++|++|+++|++|+|++.++ +++|+
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~ 77 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY 77 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence 4899999999999999999999988766 479999999999999999999999999999999999998875 77999
Q ss_pred cccccchhhhHHHHHHHHHH
Q 029184 143 TLRKGVFIAAAVFVVATMIL 162 (197)
Q Consensus 143 ~vk~GvFa~aAvl~l~t~~~ 162 (197)
++|+|+|++||+|+|+|++|
T Consensus 78 ~~k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 78 TVKKGVFAGGAVLSLVTALF 97 (97)
T ss_pred ccCCceeeHhHHHHHHHHhC
Confidence 99999999999999999875
No 2
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=89.64 E-value=1.1 Score=44.97 Aligned_cols=73 Identities=25% Similarity=0.364 Sum_probs=44.5
Q ss_pred eeecCCCchh-hhHHHHHHHHHHHHHHHHHHhcccccC-CC-CCCC--------CChHH---HHHHHHHHHHHHHHHHHH
Q 029184 51 YCVYSSDVAT-GYGVGAFLFLLSSESLLMGVTKCMCFG-RP-LAPG--------GNRAW---TIIYFMSSWAAFLVAEAC 116 (197)
Q Consensus 51 ~C~Yps~~A~-~lGi~A~v~Ll~aqvi~~~a~~C~Cc~-~~-~~~~--------~~r~~---ai~~~v~SWi~f~iA~~l 116 (197)
.-+|.++.-. +++++..++|++ ++.....-|+||| ++ ..|+ +.+-+ ..+.|++||+..+++.+.
T Consensus 406 ~~~y~~yR~~~~lil~~~llLIv--~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~ 483 (806)
T PF05478_consen 406 YEKYDSYRWIVGLILCCVLLLIV--LCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFY 483 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555433 445555555544 3333445577898 43 2232 12222 367789999999999999
Q ss_pred HHHHhhhcc
Q 029184 117 LIAGATKNA 125 (197)
Q Consensus 117 Ll~Ga~~N~ 125 (197)
|+.|.....
T Consensus 484 Fl~G~~~~~ 492 (806)
T PF05478_consen 484 FLVGGNTYT 492 (806)
T ss_pred HHHHhhhhe
Confidence 999998743
No 3
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=87.82 E-value=3.3 Score=33.34 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccceeccCCCCCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 029184 9 GSTLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGR 88 (197)
Q Consensus 9 ~~~~v~~~v~~lgliAfiLgi~AE~~r~~~~~~~~~~~~~~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~ 88 (197)
+.-...++..+++..|+++|+..=... ...+-+...|.+.+++++++.=++....=.=.-|+
T Consensus 64 aa~afaIisi~~~~~a~v~g~~~l~~~-----------------~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~- 125 (155)
T PF07344_consen 64 AAQAFAIISIFVYGAAFVLGVLLLCCC-----------------SCLRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG- 125 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-
Confidence 345667888899999999998864332 23334567788888888877654433322223444
Q ss_pred CCCCCC-ChHHHHHHHHHHHHHHHHHHHHH
Q 029184 89 PLAPGG-NRAWTIIYFMSSWAAFLVAEACL 117 (197)
Q Consensus 89 ~~~~~~-~r~~ai~~~v~SWi~f~iA~~lL 117 (197)
+.++.. +=..+-.+++++|+..+++.+.|
T Consensus 126 ~~~~~~~~yg~GF~L~v~aw~l~~i~ii~L 155 (155)
T PF07344_consen 126 ALKSRGYKYGAGFALFVAAWCLDIINIIFL 155 (155)
T ss_pred CccCCCcccCccHHHHHHHHHHHHHHHHhC
Confidence 333322 22347889999999999987754
No 4
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=83.41 E-value=1.9 Score=29.00 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHH
Q 029184 103 FMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMI 161 (197)
Q Consensus 103 ~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~vk~GvFa~aAvl~l~t~~ 161 (197)
...+|+.|+++..++..|.- |....- -.||.++.+-.+++.++.
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~-~~~~~l--------------~~KGy~~~~~l~~l~s~~ 45 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLW-NAPLDL--------------SEKGYYAMGLLFLLFSAF 45 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCCCH--------------HHHHHHHHHHHHHHHHHH
Confidence 46899999999999999986 554332 257888888887776643
No 5
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=80.23 E-value=8.7 Score=36.16 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=17.4
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHhcccccCC
Q 029184 59 ATGY-GVGAFLFLLSSESLLMGVTKCMCFGR 88 (197)
Q Consensus 59 A~~l-Gi~A~v~Ll~aqvi~~~a~~C~Cc~~ 88 (197)
|+++ |..|++.+++.-+...+...|.||.+
T Consensus 38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr 68 (418)
T cd07912 38 SLLILASIPAACLILSLLFLLVYLITRCCDR 68 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5554 55566666666566665566665543
No 6
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=77.69 E-value=5 Score=35.47 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=31.6
Q ss_pred HHhcccccCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029184 79 GVTKCMCFGRPL--APGGNRAWTIIYFMSSWAAFLVAEACLIAGATKN 124 (197)
Q Consensus 79 ~a~~C~Cc~~~~--~~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N 124 (197)
...+|+-|+|.. .++-.|..+++||+++-+++++|..+. +|+...
T Consensus 176 tlARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaiglt-vGT~~~ 222 (256)
T PF09788_consen 176 TLARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLT-VGTWTY 222 (256)
T ss_pred ccccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 347899898753 333578889999999988876665554 565543
No 7
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=73.26 E-value=6.1 Score=36.77 Aligned_cols=29 Identities=24% Similarity=0.141 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 029184 62 YGVGAFLFLLSSESLLMGVTKCMCFGRPL 90 (197)
Q Consensus 62 lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~ 90 (197)
+|..+++.|.+.-+...+-.-|.||+|+.
T Consensus 22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~ 50 (406)
T PF04906_consen 22 LASVAAACLALSLLFLLIYLICRCCCRRP 50 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 45666667777776666666777776553
No 8
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=55.23 E-value=17 Score=30.79 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccceeccCCCCCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhcccccCCC
Q 029184 10 STLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRP 89 (197)
Q Consensus 10 ~~~v~~~v~~lgliAfiLgi~AE~~r~~~~~~~~~~~~~~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~ 89 (197)
+-...++.++++.+|++||+..=. .|...+--.+.|.+.+++.+.+.=+. ++.+ +-+++
T Consensus 77 aqAfaIISI~v~~aA~vlg~~~l~-----------------cc~~lr~vcl~Lnivg~vt~~VvWa~-mv~~---Y~~~~ 135 (192)
T PTZ00201 77 AQALAVISILVYGAAFVLGLVLLY-----------------GCTIHRWVCLALNIVGAVTLGVVWAA-MVVT---YYKDD 135 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------ccchHHHHHHHHHHHHHHHHheeeee-EEEE---EEcCC
Confidence 445677888889999999985522 12221222333444444443333211 1110 11110
Q ss_pred ------CCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029184 90 ------LAP-GGNRAWTIIYFMSSWAAFLVAEACLIAGATKNA 125 (197)
Q Consensus 90 ------~~~-~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~ 125 (197)
.+. .-+=.-+-.+++++|+..+|..+.|+..-..+.
T Consensus 136 ~~~C~~~~~~~~~yGaGF~Llv~AW~L~iinii~lllp~~~~~ 178 (192)
T PTZ00201 136 GPLCPRVRDMGYRFGTGFALLVVAWILDILNIIFLLLPCTVPA 178 (192)
T ss_pred CccccccccCCCCccCcHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 111 111223688999999999999999998764443
No 9
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=53.16 E-value=20 Score=34.58 Aligned_cols=53 Identities=19% Similarity=0.089 Sum_probs=31.3
Q ss_pred chhhh-HHHHHHHHHHHHHHHHHHhcccccCCCCCCC----CChHHHHHHHHHHHHHH
Q 029184 58 VATGY-GVGAFLFLLSSESLLMGVTKCMCFGRPLAPG----GNRAWTIIYFMSSWAAF 110 (197)
Q Consensus 58 ~A~~l-Gi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~~----~~r~~ai~~~v~SWi~f 110 (197)
+|+.+ |..++.+|.+.-+..-+..-|.||.|+..++ ..|-+...++|++-+++
T Consensus 41 QaL~lla~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cc 98 (526)
T KOG4433|consen 41 QALLLLAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCC 98 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHH
Confidence 45543 6777778888877777777787775543222 33333445555555554
No 10
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=51.73 E-value=99 Score=23.10 Aligned_cols=63 Identities=19% Similarity=0.072 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Q 029184 100 IIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYY 167 (197)
Q Consensus 100 i~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~vk~GvFa~aAvl~l~t~~~~i~yY 167 (197)
...=.+-++.++++.+.+.......+-. ++ .+++......+.+...++++|++++.++.+..-
T Consensus 80 ~~~~~v~~il~l~a~~~~a~~~~~~~~~--~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~ 142 (144)
T PF01284_consen 80 FIFDAVFAILWLAAFIALAAYLSDHSCS--NT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSA 142 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccc--cC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544432211 00 111223334455777899999999988877653
No 11
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=51.32 E-value=12 Score=28.76 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 029184 96 RAWTIIYFMSSWAAFLVAEA 115 (197)
Q Consensus 96 r~~ai~~~v~SWi~f~iA~~ 115 (197)
..+.-.++++||+-|++-+.
T Consensus 83 ~~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 33455699999999976543
No 12
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=50.90 E-value=69 Score=32.42 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=14.7
Q ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHH
Q 029184 95 NRA-WTIIYFMSSWAAFLVAEACLIA 119 (197)
Q Consensus 95 ~r~-~ai~~~v~SWi~f~iA~~lLl~ 119 (197)
.|. +++.+++++.+..+-....|++
T Consensus 138 ~R~~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 138 RRGCLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354 5777777776665444455554
No 13
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=49.48 E-value=1.1e+02 Score=24.50 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=52.2
Q ss_pred eeecCCC---chhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 029184 51 YCVYSSD---VATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYH 127 (197)
Q Consensus 51 ~C~Yps~---~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~ 127 (197)
.|...++ .+-++.+.+.++..++-+++-..-.| | +..|....++.++++++..+ .|+.+.+-++
T Consensus 54 ~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~l~~--~------~~~r~v~l~L~~~~~~~~~v-----~wa~~v~~Y~ 120 (155)
T PF07344_consen 54 NCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLLLCC--C------SCLRWVCLVLNIVGIVTLLV-----VWALMVVVYY 120 (155)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h------hhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHc
Confidence 5655444 35567788888888887766665443 3 13566667777777766544 4444444444
Q ss_pred ccccccccccccccccccccc--hhhhHHHHHHHHHHHHH
Q 029184 128 TKYRSMIYAQNITCETLRKGV--FIAAAVFVVATMILNVY 165 (197)
Q Consensus 128 ~~~~~~~~~~~~~C~~vk~Gv--Fa~aAvl~l~t~~~~i~ 165 (197)
. +.|...+++- |+.|=.|.+++=.+.++
T Consensus 121 ~----------~~C~~~~~~~~~yg~GF~L~v~aw~l~~i 150 (155)
T PF07344_consen 121 G----------GFCGALKSRGYKYGAGFALFVAAWCLDII 150 (155)
T ss_pred c----------CCCcCccCCCcccCccHHHHHHHHHHHHH
Confidence 2 2576655443 55554555444444433
No 14
>PRK11383 hypothetical protein; Provisional
Probab=45.26 E-value=61 Score=26.40 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029184 100 IIYFMSSWAAFLVAEACLIAGATKNA 125 (197)
Q Consensus 100 i~~~v~SWi~f~iA~~lLl~Ga~~N~ 125 (197)
-.|..+||+.++++..+++.|-= |+
T Consensus 10 ~af~~~sw~al~~g~~~y~iGLw-nA 34 (145)
T PRK11383 10 PAFSIVSWIALVGGIVTYLLGLW-NA 34 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hc
Confidence 34778999999999999999964 54
No 15
>PRK11383 hypothetical protein; Provisional
Probab=37.58 E-value=85 Score=25.56 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHH
Q 029184 100 IIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMI 161 (197)
Q Consensus 100 i~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~vk~GvFa~aAvl~l~t~~ 161 (197)
-.+.-+||...+++..+|+.|.- |+.-. .-.+|++..+=+++|+..+
T Consensus 73 ~~f~~~cw~a~l~~i~LL~iGLw-NA~l~--------------lsEKGfY~~af~lsLFgai 119 (145)
T PRK11383 73 SIYYMTCLTVFIISVALLMVGLW-NATLL--------------LSEKGFYGLAFFLSLFGAV 119 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCcc--------------hhhhhHHHHHHHHHHHHHH
Confidence 36778999999999999999974 66422 2367999888777777654
No 16
>COG4682 Predicted membrane protein [Function unknown]
Probab=32.13 E-value=1.3e+02 Score=23.93 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 029184 97 AWTIIYFMSSWAAFLVAEACLIAGATKNAYHT 128 (197)
Q Consensus 97 ~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~ 128 (197)
..+..+-++||..|++++...+.|- +|+.+.
T Consensus 7 ~~s~af~~va~~~lv~G~vvyLiGL-Wna~~q 37 (128)
T COG4682 7 IVSKAFTIVAWLALVVGAVVYLVGL-WNACMQ 37 (128)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhh-cccchh
Confidence 4456678899999999999999996 465433
No 17
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=31.82 E-value=1.6e+02 Score=25.27 Aligned_cols=55 Identities=7% Similarity=-0.001 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhc---ccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029184 64 VGAFLFLLSSESLLMGVTK---CMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATK 123 (197)
Q Consensus 64 i~A~v~Ll~aqvi~~~a~~---C~Cc~~~~~~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~ 123 (197)
.+.+++++++++.+..+.. |.+|.++ .-..-.++.++++++..+|.+.+..-+-+
T Consensus 105 ~AvLil~~~s~lf~~lsi~~~iCa~c~~~-----~ai~~~v~~~ia~l~S~~g~~iF~~~a~~ 162 (211)
T PF07062_consen 105 KAVLILISFSMLFALLSICFGICAPCHPS-----FAIFYTVLVFIAALLSLIGLGIFFFNAHM 162 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888876666554 4334321 11445667788888888999988887765
No 18
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=30.62 E-value=2.4e+02 Score=21.44 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 029184 98 WTIIYFMSSWAAFLVAEACLIAGATKN 124 (197)
Q Consensus 98 ~ai~~~v~SWi~f~iA~~lLl~Ga~~N 124 (197)
.+.+++++|.++.+++.+.+..--..|
T Consensus 103 ~~~~~~~~ag~~~l~~l~~~~~~~~~~ 129 (172)
T PF13903_consen 103 FAGILFILAGLCILIALIVFVVSVNYE 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788899998888888777666554
No 19
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=30.54 E-value=3.3e+02 Score=23.05 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 029184 59 ATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQN 138 (197)
Q Consensus 59 A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~ 138 (197)
|-++.+.|+++..+|-+++-.... ||. ..|++..++-+++ ++-.+..|+.+.-.++++ ..
T Consensus 77 aqAfaIISI~v~~aA~vlg~~~l~--cc~------~lr~vcl~Lnivg-----~vt~~VvWa~mv~~Y~~~-------~~ 136 (192)
T PTZ00201 77 AQALAVISILVYGAAFVLGLVLLY--GCT------IHRWVCLALNIVG-----AVTLGVVWAAMVVTYYKD-------DG 136 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--ccc------hHHHHHHHHHHHH-----HHHHheeeeeEEEEEEcC-------CC
Confidence 556778888887777776665554 232 2344444444433 333445566665544442 13
Q ss_pred cccccccc-c-chhhhHHHHHHHHHHHHHHHH
Q 029184 139 ITCETLRK-G-VFIAAAVFVVATMILNVYYYM 168 (197)
Q Consensus 139 ~~C~~vk~-G-vFa~aAvl~l~t~~~~i~yYv 168 (197)
+.|+..|+ + -|+.|=.|-+.+-.+.++--+
T Consensus 137 ~~C~~~~~~~~~yGaGF~Llv~AW~L~iinii 168 (192)
T PTZ00201 137 PLCPRVRDMGYRFGTGFALLVVAWILDILNII 168 (192)
T ss_pred ccccccccCCCCccCcHHHHHHHHHHHHHHHH
Confidence 36887777 4 355555555555444444433
No 20
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=29.78 E-value=2.4e+02 Score=21.51 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=18.0
Q ss_pred CCCchhhhHHHHHHHHHHHHHHH
Q 029184 55 SSDVATGYGVGAFLFLLSSESLL 77 (197)
Q Consensus 55 ps~~A~~lGi~A~v~Ll~aqvi~ 77 (197)
.=+-++.++.+|+++++++-++.
T Consensus 148 ~~gwSf~la~~a~~~~l~a~~l~ 170 (172)
T PF13903_consen 148 SYGWSFWLAWVAFILLLLAGILF 170 (172)
T ss_pred EECHHHHHHHHHHHHHHHHHHHH
Confidence 33668899999999999887654
No 21
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=29.19 E-value=13 Score=28.44 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccceeccCCCCCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 029184 15 ILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGG 94 (197)
Q Consensus 15 ~~v~~lgliAfiLgi~AE~~r~~~~~~~~~~~~~~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~~~ 94 (197)
++=+++|+++.+||+.+...+.. . ..-.+.++-+.++.+++=+++-.+. .+|++
T Consensus 4 ~~qI~lGi~~i~lGi~~~~~~~~--------------~----~~~~~~piW~G~~fiisG~l~i~s~--------k~~~~ 57 (150)
T PF04103_consen 4 VIQILLGILSIVLGIIALSLSSS--------------V----LVYIGYPIWGGIFFIISGILGIASE--------KKPTK 57 (150)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH--------------H----HHHhcccHHHHHHHHhhHHHHHHHh--------cCCcc
Confidence 44568899999999888665542 0 0111122222223333333332222 12222
Q ss_pred C-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 029184 95 N-RAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTK 129 (197)
Q Consensus 95 ~-r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~ 129 (197)
. -....++.++|=+..+.+.++...+...+..+..
T Consensus 58 ~lv~~~l~lsi~s~~~a~~~i~l~~~~l~~~~~~~~ 93 (150)
T PF04103_consen 58 CLVIASLVLSIVSALLALAGIILSSISLAQQHYYYC 93 (150)
T ss_dssp ------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2 2235666777777777777777777776554443
No 22
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=29.05 E-value=81 Score=27.67 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHhcccccCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029184 75 SLLMGVTKCMCFGRPLAPG--GNRAWTIIYFMSSWAAFLVAEACLIAG 120 (197)
Q Consensus 75 vi~~~a~~C~Cc~~~~~~~--~~r~~ai~~~v~SWi~f~iA~~lLl~G 120 (197)
-+-|...+|+-|+|-..-+ -.|.-++.|||+.-++.+.|.++-+.-
T Consensus 184 t~tnaLArCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt~gT 231 (275)
T KOG4684|consen 184 TLTNALARCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILTMGT 231 (275)
T ss_pred hHHHHHhcCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 4566788999998743222 244557888888887777776665543
No 23
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=4.3e+02 Score=23.10 Aligned_cols=143 Identities=19% Similarity=0.322 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccceeccCCCCCCCceeecCCCc-hhhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 029184 10 STLVHILVVILSLVAFGFSIAAERRRSTGHMMPVPDQSNATYCVYSSDV-ATGYGVGAFLFLLSSESLLMGVTKCMCFGR 88 (197)
Q Consensus 10 ~~~v~~~v~~lgliAfiLgi~AE~~r~~~~~~~~~~~~~~~~C~Yps~~-A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~ 88 (197)
-+++-++-.+++||=|. +|.-|.=.++.+ + ....|.|.+|+ |-.+|++.-++-.++-+.-.+.--. . .
T Consensus 25 ~ti~R~~~~lFsliVf~-si~~eGy~n~~~------~-~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~--f-~ 93 (233)
T KOG4016|consen 25 QTILRVVSWLFSLIVFG-SIVNEGYLNSAS------S-GEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVY--F-P 93 (233)
T ss_pred hhHHHHHHHHHHHhhee-eeccccccCccc------C-CceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhh--h-h
Confidence 34555555566655442 344444444322 1 45689999886 3355555555444444444333221 1 1
Q ss_pred CC--CCCCChH-HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Q 029184 89 PL--APGGNRA-WTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVY 165 (197)
Q Consensus 89 ~~--~~~~~r~-~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~vk~GvFa~aAvl~l~t~~~~i~ 165 (197)
+. .+.++|- ++-+-+-.-|...-.--.|+||- +-+.. +|+=-.++.|==-+|=.|+|++.+.|..
T Consensus 94 qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l~n----qwqvs--------~p~~~~~~a~saraaIafsffSilsW~~ 161 (233)
T KOG4016|consen 94 QISSVKDRKRAVLADLGVSALWAFLWFVGFCFLAN----QWQVS--------KPKENPLGAGSARAAIAFSFFSILSWGG 161 (233)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhcc--------CCCCCCcCcchHHHHHHHHHHHHHHHHH
Confidence 11 1223443 34333334454433334455543 21111 1112244555333445678888888876
Q ss_pred HH-HHHhhhhh
Q 029184 166 YY-MYFTKATA 175 (197)
Q Consensus 166 yY-v~~~~a~~ 175 (197)
.= +.++|=|+
T Consensus 162 ~A~lA~qR~~~ 172 (233)
T KOG4016|consen 162 QAVLAFQRYRI 172 (233)
T ss_pred HHHHHHHHHHh
Confidence 54 44444443
No 24
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=25.94 E-value=1.6e+02 Score=22.65 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 029184 61 GYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTK 129 (197)
Q Consensus 61 ~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~ 129 (197)
++-+.+.++..++-++...... |.++...+.. +-+.+++|.++.+++.+.-..+..
T Consensus 75 ~l~i~s~il~~l~~~l~~~g~~--~~~~~~~~~~-----------ag~l~~~agl~~l~~~~~y~~~~~ 130 (166)
T PF00822_consen 75 ALMILSIILGFLGLILALFGLC--CTKRGPRPKV-----------AGILFILAGLCLLIAVSWYTAVIV 130 (166)
T ss_pred HHhHHHHHHHHHHHHHHHhccc--ccccCCCCCc-----------ceeeeHHHhhhhheeEEEEeccCc
Confidence 4456666666666554443322 2222211111 566778888899999887655544
No 25
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.24 E-value=1e+02 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=23.3
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 029184 6 EGKGSTLVHILVVILSLVAFGFSIAAERRRS 36 (197)
Q Consensus 6 ~g~~~~~v~~~v~~lgliAfiLgi~AE~~r~ 36 (197)
.+|+--.--.++.+.+++.|++|+..|.=.-
T Consensus 21 QkkaEr~~q~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 21 QKKAERFQQLILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555667788899999999999987443
No 26
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.48 E-value=89 Score=26.18 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.7
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCcc
Q 029184 145 RKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGAR 180 (197)
Q Consensus 145 k~GvFa~aAvl~l~t~~~~i~yYv~~~~a~~~~~~~ 180 (197)
.-|.+.+-.++.+++.+.+++||++++|-+. .|+
T Consensus 67 ~~G~~igi~~~gv~Si~aAllY~~~l~k~~g--~W~ 100 (173)
T PF11085_consen 67 WLGNLIGIVFIGVFSIVAALLYYALLKKFKG--PWP 100 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cch
Confidence 4477888889999999999999999998874 565
No 27
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=23.97 E-value=3.2e+02 Score=23.94 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=47.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 029184 55 SSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTK 129 (197)
Q Consensus 55 ps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~ 129 (197)
.++.+++.|+.+++-+.--|+.-+++=.|||--+. |..-+.+| .++-|.++|+.|-..|++-.+
T Consensus 13 ~~~~~~~ngi~~llt~g~e~lfs~~~F~CPC~~~~-----N~~YGl~f------LlvPAl~LfllG~~ln~~~W~ 76 (251)
T PF14798_consen 13 SHSESLGNGICALLTAGGEQLFSSFVFSCPCSPGW-----NFLYGLVF------LLVPALVLFLLGYLLNRRTWR 76 (251)
T ss_pred hcchhHHHHHHHHHHHHHHhhhheeeeecCCCCcc-----cchhHhHH------HHHHHHHHHHHHHHHhcccch
Confidence 35678899999999999999999999999976332 33333333 345788889999999885443
No 28
>PRK11403 hypothetical protein; Provisional
Probab=22.80 E-value=2e+02 Score=22.45 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHH
Q 029184 98 WTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVAT 159 (197)
Q Consensus 98 ~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~vk~GvFa~aAvl~l~t 159 (197)
..-.+.-+||...+++..+|..|.- |+.-. ...+|+++.+=+++|+.
T Consensus 59 ~~~~y~~~cw~~~llsi~LL~vGl~-NA~l~--------------lsEKgfY~~af~lsLfg 105 (113)
T PRK11403 59 LDDFFIHICQLVALITIGLLFIGVL-NAPIN--------------AYEMVIYPIAFFVCLFG 105 (113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh-ccccc--------------HHHhhHHHHHHHHHHHH
Confidence 3356888999999999999999974 76422 22578888887777776
No 29
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=21.48 E-value=61 Score=28.16 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=14.7
Q ss_pred ccCCCchhhhHHHHHHHH
Q 029184 3 VLGEGKGSTLVHILVVIL 20 (197)
Q Consensus 3 ~~~~g~~~~~v~~~v~~l 20 (197)
.|||||.++++-++...|
T Consensus 49 nMGeGKTsVI~Pmla~~L 66 (229)
T PF12340_consen 49 NMGEGKTSVIVPMLALAL 66 (229)
T ss_pred cccCCccchHHHHHHHHH
Confidence 599999999888776655
No 30
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=20.88 E-value=4.2e+02 Score=22.65 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--ccceeccCCCCCCCceeecC-CCchhhhHHHHHHHHHHHHHHHHHHhcccccCCCCC
Q 029184 15 ILVVILSLVAFGFSIAAERRR--STGHMMPVPDQSNATYCVYS-SDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLA 91 (197)
Q Consensus 15 ~~v~~lgliAfiLgi~AE~~r--~~~~~~~~~~~~~~~~C~Yp-s~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~ 91 (197)
++.+++.++|..|-|.|-..| -++.+-+-. -..+|+-| +.++.++ --.+ |-+...
T Consensus 19 ~i~licl~~aial~IvAl~s~~Wl~as~~~q~---Lw~~C~~~~~~~~~pf----------------d~~~---C~s~~~ 76 (201)
T KOG4671|consen 19 LILLICLLSAIALDIVALASRGWLQASDQRQG---LWWSCRKPASTHAAPF----------------DPGG---CQSTLE 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhcCCCCcc---eeeeecCcCCcCCCCc----------------CCcc---CcChhh
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHH
Q 029184 92 PGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVAT 159 (197)
Q Consensus 92 ~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~vk~GvFa~aAvl~l~t 159 (197)
.+.-|..+-.+|+. .+|..++++.|-..-....|+ .=|-+-.|+|..+++|...+
T Consensus 77 ~~~~~aaAAmL~~g----~~i~~I~filgl~~~cv~~~~---------~fyRvi~~~l~laaV~qi~s 131 (201)
T KOG4671|consen 77 VDGGRAAAAMLFIG----AAILVICFILGLFALCVPLKL---------VFYRVIGGLLFLAAVLQIIS 131 (201)
T ss_pred cchHHHHHHHHHHH----HHHHHHHHHHHHHHhcCcceE---------EeeeHHHHHHHHHHHHHhhe
No 31
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=20.82 E-value=2.5e+02 Score=25.27 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=13.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHH
Q 029184 145 RKGVFIAAAVFVVATMILNVYYY 167 (197)
Q Consensus 145 k~GvFa~aAvl~l~t~~~~i~yY 167 (197)
..+-|+.-++..++-...++-+|
T Consensus 73 v~~~~G~~~v~liLgl~ig~p~~ 95 (279)
T PF07271_consen 73 VGGSAGLLAVALILGLAIGIPIY 95 (279)
T ss_pred ccchhhHHHHHHHHHHhhcchhh
Confidence 45566666666666666666555
No 32
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=20.32 E-value=1.6e+02 Score=28.58 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchh-------------------hhHHH----
Q 029184 99 TIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFI-------------------AAAVF---- 155 (197)
Q Consensus 99 ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~vk~GvFa-------------------~aAvl---- 155 (197)
-++...+.|+. +++|-+.|+-.++.++++ .+|++.|.+++. ++-+|
T Consensus 209 vll~i~ivW~~---~~iLT~tgay~~~~~~t~--------~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~a 277 (510)
T KOG1292|consen 209 VLLAIAIVWLY---CFILTITGAYPYKPTTTQ--------SSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMA 277 (510)
T ss_pred HHHHHHHHHHH---HHHHHhccccCCCccccC--------CcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHH
Confidence 35666778875 477888888777655443 256666655443 23333
Q ss_pred -HHHHHHHHHHHHHHHhhhhh
Q 029184 156 -VVATMILNVYYYMYFTKATA 175 (197)
Q Consensus 156 -~l~t~~~~i~yYv~~~~a~~ 175 (197)
++++++-++-.|....|--.
T Consensus 278 a~~va~iES~G~y~a~ar~~~ 298 (510)
T KOG1292|consen 278 ASLVAMIESTGDYIACARLSS 298 (510)
T ss_pred HHHHHHHHhcchHHHHHHHhc
Confidence 45666677777877666544
Done!