Query 029184
Match_columns 197
No_of_seqs 108 out of 218
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp3_A FXYD domain-containing 6.3 3.1E+02 0.011 18.5 2.2 17 72-88 30-46 (67)
2 3arc_M Photosystem II reaction 5.4 5.6E+02 0.019 15.2 3.0 23 146-168 5-27 (36)
3 3qrx_B Melittin; calcium-bindi 5.2 2.3E+02 0.0079 15.5 0.8 7 102-108 14-20 (26)
4 2lk9_A Bone marrow stromal ant 5.1 4.9E+02 0.017 15.3 2.3 21 11-31 11-31 (35)
5 2nr1_A NR1 M2, M2; receptor, s 5.0 3.6E+02 0.012 15.0 1.6 14 112-125 10-23 (27)
6 2kih_A Matrix protein 2; S31N, 4.1 6.3E+02 0.022 15.3 2.4 26 141-166 2-27 (43)
7 1skh_A Major prion protein 2; 4.1 4.9E+02 0.017 14.8 1.7 12 98-109 9-20 (30)
8 2jo1_A Phospholemman; FXYD1, N 3.9 5.5E+02 0.019 17.5 2.2 17 71-87 28-44 (72)
9 2zxe_G FXYD10, phospholemman-l 3.7 6.7E+02 0.023 17.2 2.5 17 72-88 32-48 (74)
10 2ks1_B Epidermal growth factor 3.5 8.5E+02 0.029 14.7 2.7 15 154-168 21-35 (44)
No 1
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.27 E-value=3.1e+02 Score=18.51 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcccccCC
Q 029184 72 SSESLLMGVTKCMCFGR 88 (197)
Q Consensus 72 ~aqvi~~~a~~C~Cc~~ 88 (197)
+.-+++-...+|-|+.+
T Consensus 30 i~GI~iilS~kcrCk~~ 46 (67)
T 2jp3_A 30 IAGIALALSGKCKCRRN 46 (67)
T ss_dssp HHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHcCcccccCC
Confidence 33455556678988753
No 2
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=5.45 E-value=5.6e+02 Score=15.17 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHH
Q 029184 146 KGVFIAAAVFVVATMILNVYYYM 168 (197)
Q Consensus 146 ~GvFa~aAvl~l~t~~~~i~yYv 168 (197)
..=|-+-+.|.++-++|-++-|+
T Consensus 5 ~l~fiAt~Lfi~iPt~FLlilYv 27 (36)
T 3arc_M 5 QLGLIATALFVLVPSVFLIILYV 27 (36)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34477888999999999999998
No 3
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=5.16 E-value=2.3e+02 Score=15.55 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=4.5
Q ss_pred HHHHHHH
Q 029184 102 YFMSSWA 108 (197)
Q Consensus 102 ~~v~SWi 108 (197)
--++|||
T Consensus 14 P~liSWi 20 (26)
T 3qrx_B 14 PALISWI 20 (26)
T ss_pred hHHHHHH
Confidence 3467786
No 4
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=5.06 E-value=4.9e+02 Score=15.28 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 029184 11 TLVHILVVILSLVAFGFSIAA 31 (197)
Q Consensus 11 ~~v~~~v~~lgliAfiLgi~A 31 (197)
+++.+++..||+.=-++.+-|
T Consensus 11 vl~LLviV~LgV~LI~f~~kA 31 (35)
T 2lk9_A 11 ILVLLIIVILGVPLIIFTIKK 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcchheEEeeec
Confidence 444555555666555554444
No 5
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=5.02 E-value=3.6e+02 Score=15.04 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhhcc
Q 029184 112 VAEACLIAGATKNA 125 (197)
Q Consensus 112 iA~~lLl~Ga~~N~ 125 (197)
++...|.||...|+
T Consensus 10 ~aa~wF~WGvllns 23 (27)
T 2nr1_A 10 SSAMWFSWGVLLNS 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheec
Confidence 56677778887775
No 6
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=4.10 E-value=6.3e+02 Score=15.33 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=17.6
Q ss_pred cccccccchhhhHHHHHHHHHHHHHH
Q 029184 141 CETLRKGVFIAAAVFVVATMILNVYY 166 (197)
Q Consensus 141 C~~vk~GvFa~aAvl~l~t~~~~i~y 166 (197)
|.-..+-+-.+|.+...++.++||.=
T Consensus 2 c~dssdplv~aa~iiGIlHLiLwild 27 (43)
T 2kih_A 2 SNDSSDPLVVAANIIGILHLILWILD 27 (43)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 33344556678889999999999864
No 7
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=4.05 E-value=4.9e+02 Score=14.84 Aligned_cols=12 Identities=25% Similarity=1.187 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHH
Q 029184 98 WTIIYFMSSWAA 109 (197)
Q Consensus 98 ~ai~~~v~SWi~ 109 (197)
|-+++|+..|--
T Consensus 9 wilvLfva~wsd 20 (30)
T 1skh_A 9 WILVLFVAMWSD 20 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 456677777743
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=3.90 E-value=5.5e+02 Score=17.47 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcccccC
Q 029184 71 LSSESLLMGVTKCMCFG 87 (197)
Q Consensus 71 l~aqvi~~~a~~C~Cc~ 87 (197)
.+.-+++-...+|-|..
T Consensus 28 fi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 28 FILGILIVLSRRCRCKF 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccCC
Confidence 33345556667888774
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=3.68 E-value=6.7e+02 Score=17.16 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=6.6
Q ss_pred HHHHHHHHHhcccccCC
Q 029184 72 SSESLLMGVTKCMCFGR 88 (197)
Q Consensus 72 ~aqvi~~~a~~C~Cc~~ 88 (197)
+.-+++-...+|-|..+
T Consensus 32 i~GI~iilS~kcrCk~~ 48 (74)
T 2zxe_G 32 VIGIIILLAGKCRCKFN 48 (74)
T ss_dssp HHHHHHHTTTC------
T ss_pred HHHHHHHHcCccccCCC
Confidence 33455566778887653
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=3.48 E-value=8.5e+02 Score=14.73 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 029184 154 VFVVATMILNVYYYM 168 (197)
Q Consensus 154 vl~l~t~~~~i~yYv 168 (197)
++.++..++.+.+|+
T Consensus 21 v~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 21 LLLLLVVALGIGLFM 35 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444443
Done!